From 1626cbec77e0316b4bac17714bbfdba92589b9f7 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Thu, 2 Nov 2023 01:03:08 +0000 Subject: [PATCH 1/3] =?UTF-8?q?=F0=9F=93=AE=20Automatically=20update?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- docs/_data/curation.yml | 13 +- docs/img/bibliography_years.svg | 198 +- docs/img/bioregistry_coverage.svg | 444 +- docs/img/bioregistry_coverage_bar.svg | 164 +- docs/img/bioregistry_coverage_bar_short.svg | 232 +- docs/img/external_overlap.svg | 26954 ++- docs/img/has_attribute.svg | 306 +- docs/img/providers.svg | 6 +- docs/img/regex_report.svg | 6 +- docs/img/xrefs.svg | 54 +- exports/contexts/bioregistry.context.jsonld | 1 + exports/contexts/bioregistry.context.ttl | 1 + exports/contexts/bioregistry.epm.json | 15 + exports/contexts/bioregistry.rpm.json | 10 + exports/contexts/obo.context.jsonld | 1 + exports/contexts/obo.context.ttl | 1 + exports/contexts/obo.epm.json | 13 + exports/contexts/obo_synonyms.context.jsonld | 1 + exports/contexts/obo_synonyms.context.ttl | 1 + exports/rdf/bioregistry.jsonld | 185505 ++++++++------- exports/rdf/bioregistry.nt | 96644 ++++---- exports/rdf/bioregistry.ttl | 23 +- exports/rdf/schema.jsonld | 292 +- exports/rdf/schema.nt | 228 +- exports/registry/registry.json | 12 + exports/registry/registry.tsv | 2 +- exports/registry/registry.yml | 12 + exports/tables/summary.tex | 8 +- src/bioregistry/data/bioregistry.json | 33 +- .../data/external/bioportal/curation.tsv | 7 +- .../data/external/bioportal/processed.json | 39 +- .../data/external/bioportal/raw.json | 177 +- src/bioregistry/data/external/n2t/raw.yml | 18 +- src/bioregistry/data/external/ncbi/raw.html | 10 +- .../data/external/ols/processed.json | 30 +- src/bioregistry/data/external/ols/raw.json | 1208 +- .../data/external/wikidata/processed.json | 7 +- 37 files changed, 156615 insertions(+), 156061 deletions(-) diff --git a/docs/_data/curation.yml b/docs/_data/curation.yml index 1d814e931..7ac3fc045 100644 --- a/docs/_data/curation.yml +++ b/docs/_data/curation.yml @@ -50,9 +50,6 @@ example: - homepage: http://code.google.com/p/mirna-ontology/ name: microRNA Ontology prefix: mirnao -- homepage: null - name: null - prefix: ncbidrs - homepage: https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/ name: Ontology for computer aided process engineering prefix: nfdi4chem.ontocape @@ -291,9 +288,6 @@ formatter: - homepage: https://www.nextmovesoftware.com/namerxn.html name: NameRXN prefix: namerxn -- homepage: null - name: null - prefix: ncbidrs - homepage: https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/ name: Ontology for computer aided process engineering prefix: nfdi4chem.ontocape @@ -1020,9 +1014,6 @@ pattern: - homepage: https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ name: NCBI Registry prefix: ncbi.resource -- homepage: null - name: null - prefix: ncbidrs - homepage: https://www.cancer.gov/publications/dictionaries/cancer-drug name: NCI Drug Dictionary ID prefix: nci.drug @@ -4371,8 +4362,8 @@ wikidata: - homepage: https://www.ncbi.nlm.nih.gov/books name: NCBI Bookshelf prefix: ncbibook -- homepage: null - name: null +- homepage: https://www.ncbi.nlm.nih.gov/ + name: NCBI Data Repository Service prefix: ncbidrs - homepage: https://www.ncbi.nlm.nih.gov/genbank/sequenceids/ name: GenInfo Identifier diff --git a/docs/img/bibliography_years.svg b/docs/img/bibliography_years.svg index 31268f4c0..90fd9ca99 100644 --- a/docs/img/bibliography_years.svg +++ b/docs/img/bibliography_years.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:13:52.137216 + 2023-11-02T01:02:20.956409 image/svg+xml @@ -43,7 +43,7 @@ L 60.579237 208.998714 L 60.579237 208.998714 L 46.348804 208.998714 z -" clip-path="url(#p3506887715)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> +" clip-path="url(#pdd5c08526e)" style="fill: #3274a1"/> - - + @@ -365,7 +365,7 @@ z - + @@ -413,7 +413,7 @@ z - + @@ -441,7 +441,7 @@ z - + @@ -498,7 +498,7 @@ z - + @@ -514,7 +514,7 @@ z - + @@ -577,7 +577,7 @@ z - + @@ -593,7 +593,7 @@ z - + @@ -609,7 +609,7 @@ z - + @@ -659,7 +659,7 @@ z - + @@ -696,7 +696,7 @@ z - + @@ -712,7 +712,7 @@ z - + @@ -728,7 +728,7 @@ z - + @@ -744,7 +744,7 @@ z - + @@ -760,7 +760,7 @@ z - + @@ -776,7 +776,7 @@ z - + @@ -792,7 +792,7 @@ z - + @@ -808,7 +808,7 @@ z - + @@ -824,7 +824,7 @@ z - + @@ -840,7 +840,7 @@ z - + @@ -856,7 +856,7 @@ z - + @@ -872,7 +872,7 @@ z - + @@ -888,7 +888,7 @@ z - + @@ -904,7 +904,7 @@ z - + @@ -920,7 +920,7 @@ z - + @@ -936,7 +936,7 @@ z - + @@ -952,7 +952,7 @@ z - + @@ -968,7 +968,7 @@ z - + @@ -984,7 +984,7 @@ z - + @@ -1002,12 +1002,12 @@ z - - + @@ -1020,7 +1020,7 @@ L -3.5 0 - + @@ -1033,7 +1033,7 @@ L -3.5 0 - + @@ -1047,7 +1047,7 @@ L -3.5 0 - + @@ -1061,7 +1061,7 @@ L -3.5 0 - + @@ -1075,7 +1075,7 @@ L -3.5 0 - + @@ -1089,7 +1089,7 @@ L -3.5 0 - + @@ -1103,7 +1103,7 @@ L -3.5 0 - + @@ -1370,91 +1370,91 @@ z - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + diff --git a/docs/img/bioregistry_coverage.svg b/docs/img/bioregistry_coverage.svg index a1e08efb6..8b21c7b8a 100644 --- a/docs/img/bioregistry_coverage.svg +++ b/docs/img/bioregistry_coverage.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:13:59.005128 + 2023-11-02T01:02:25.296036 image/svg+xml @@ -63,7 +63,7 @@ C 129.720163 124.367599 136.47841 123.082034 142.797823 120.533069 C 149.117236 117.984105 154.87609 114.220838 159.747893 109.456624 C 164.619696 104.692411 168.510608 99.019018 171.200036 92.758094 C 173.889465 86.49717 175.325607 79.769312 175.427042 72.955949 -" clip-path="url(#p562edddbe4)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#peb6b65e804)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#peb6b65e804)" style="fill: #a6cee3; opacity: 0.4"/> +" clip-path="url(#peb6b65e804)" style="fill: #fbffff; opacity: 0.4"/> @@ -562,74 +562,74 @@ z - + - + - + - - + + - - + @@ -714,16 +684,16 @@ z - - + + - + - + @@ -739,7 +709,7 @@ z - + +" clip-path="url(#p71f16429cb)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p71f16429cb)" style="fill: #b2df8a; opacity: 0.4"/> +" clip-path="url(#p71f16429cb)" style="fill: #ffffe7; opacity: 0.4"/> + + + @@ -997,7 +999,7 @@ C 91.278203 265.391866 96.753465 266.057769 102.229031 265.838302 C 107.704596 265.618835 113.108999 264.516862 118.233359 262.574976 C 123.357718 260.63309 128.135152 257.876635 132.381011 254.412148 C 136.626869 250.947662 140.285738 246.820362 143.216198 242.189771 -" clip-path="url(#p5ff359b24d)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pc436e384b8)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pc436e384b8)" style="fill: #33a02c; opacity: 0.4"/> +" clip-path="url(#pc436e384b8)" style="fill: #aaf6a5; opacity: 0.4"/> @@ -1204,7 +1206,7 @@ C 358.800298 267.177852 365.544346 265.932031 371.859446 263.427993 C 378.174546 260.923955 383.939797 257.20964 388.830292 252.494371 C 393.720787 247.779103 397.642898 242.153154 400.375591 235.933581 C 403.108285 229.714009 404.599242 223.019884 404.76444 216.228463 -" clip-path="url(#p1d3a32a297)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pfc10961835)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pfc10961835)" style="fill: #fb9a99; opacity: 0.4"/> +" clip-path="url(#pfc10961835)" style="fill: #fff2f2; opacity: 0.4"/> @@ -1437,56 +1439,56 @@ z - + - + - + - + @@ -1494,16 +1496,16 @@ C 126.34616 383.322271 131.209548 388.330973 137.088279 391.880667 - - + + - + - + @@ -1511,7 +1513,7 @@ C 126.34616 383.322271 131.209548 388.330973 137.088279 391.880667 - + @@ -1527,7 +1529,7 @@ C 126.34616 383.322271 131.209548 388.330973 137.088279 391.880667 - + +" clip-path="url(#p5a27fce902)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p5a27fce902)" style="fill: #ff7f00; opacity: 0.4"/> +" clip-path="url(#p5a27fce902)" style="fill: #ffdf86; opacity: 0.4"/> @@ -1925,7 +1927,7 @@ C 120.096269 552.988542 126.440026 552.618011 132.5631 551.123759 C 138.686173 549.629507 144.487492 547.036199 149.684439 543.47017 C 154.881386 539.904142 159.388178 535.424256 162.985261 530.248755 C 166.582344 525.073254 169.210344 519.287568 170.741233 513.173552 -" clip-path="url(#pe5b82fc81c)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p32cb7e4759)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p32cb7e4759)" style="fill: #6a3d9a; opacity: 0.4"/> +" clip-path="url(#p32cb7e4759)" style="fill: #d1b1f2; opacity: 0.4"/> @@ -2031,7 +2033,7 @@ C 346.501855 552.921372 352.78735 552.643517 358.873176 551.259466 C 364.959002 549.875416 370.746456 547.407617 375.958434 543.974229 C 381.170413 540.54084 385.722385 536.197547 389.396403 531.152305 C 393.070421 526.107062 395.806897 520.441699 397.474809 514.42747 -" clip-path="url(#p89ad9ad0b5)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pb409651eae)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pb409651eae)" style="fill: #ffff99; opacity: 0.4"/> +" clip-path="url(#pb409651eae)" style="fill: #fffff2; opacity: 0.4"/> @@ -2253,7 +2255,7 @@ C 119.495183 695.75741 125.822674 695.41442 131.935734 693.952727 C 138.048794 692.491034 143.847038 689.93464 149.049438 686.407448 C 154.251838 682.880256 158.772964 678.440187 162.393686 673.302443 C 166.014408 668.164698 168.67527 662.413645 170.247304 656.328027 -" clip-path="url(#p4823de6d4b)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p4e94e76bf0)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p4e94e76bf0)" style="fill: #a6cee3; opacity: 0.4"/> +" clip-path="url(#p4e94e76bf0)" style="fill: #fbffff; opacity: 0.4"/> @@ -2387,7 +2389,7 @@ C 345.533398 695.600201 351.63889 695.618314 357.609674 694.585785 C 363.580457 693.553256 369.325303 691.485862 374.584843 688.47694 C 379.844383 685.468019 384.538256 681.563545 388.454545 676.939796 C 392.370833 672.316047 395.449699 667.04367 397.552138 661.360703 -" clip-path="url(#pcd53f72be5)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p638d69b461)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p638d69b461)" style="fill: #1f78b4; opacity: 0.4"/> +" clip-path="url(#p638d69b461)" style="fill: #9cdaff; opacity: 0.4"/> @@ -2638,7 +2640,7 @@ C 89.781744 835.749597 94.925251 836.74977 100.130528 836.952167 C 105.335805 837.154564 110.541445 836.556798 115.565357 835.179777 C 120.589269 833.802756 125.372184 831.662727 129.7468 828.834545 C 134.121416 826.006363 138.036123 822.523394 141.353989 818.50747 -" clip-path="url(#pe67e95d15d)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe124632510)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe124632510)" style="fill: #33a02c; opacity: 0.4"/> +" clip-path="url(#pe124632510)" style="fill: #aaf6a5; opacity: 0.4"/> @@ -2766,7 +2768,7 @@ C 342.915381 838.365751 349.12339 838.202524 355.157439 836.955846 C 361.191487 835.709167 366.955883 833.398808 372.180657 830.132972 C 377.40543 826.867135 382.007723 822.697613 385.771993 817.81968 C 389.536262 812.941747 392.40281 807.432762 394.237386 801.550732 -" clip-path="url(#pe99fb1f6b9)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe472056b83)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe472056b83)" style="fill: #fb9a99; opacity: 0.4"/> +" clip-path="url(#pe472056b83)" style="fill: #fff2f2; opacity: 0.4"/> @@ -2870,7 +2872,7 @@ C 581.227223 838.434917 587.848326 837.489904 594.114249 835.329273 C 600.380171 833.168641 606.176529 829.831833 611.191577 825.498311 C 616.206625 821.164789 620.348813 815.913662 623.395363 810.027351 C 626.441912 804.141041 628.337208 797.727001 628.979316 791.130197 -" clip-path="url(#pf83204f432)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p169f9e3007)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p169f9e3007)" style="fill: #e31a1c; opacity: 0.4"/> +" clip-path="url(#p169f9e3007)" style="fill: #ff999a; opacity: 0.4"/> @@ -2987,7 +2989,7 @@ C 43.11794 938.74081 46.043804 948.399245 51.524585 956.615266 C 57.005366 964.831287 64.799223 971.24236 73.918034 975.035675 C 83.036846 978.82899 93.078242 979.837166 102.769154 977.932385 C 112.460066 976.027604 121.372879 971.293915 128.377609 964.331464 -" clip-path="url(#p18b9b4d4ad)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe2531b85d3)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pe2531b85d3)" style="fill: #fdbf6f; opacity: 0.4"/> +" clip-path="url(#pe2531b85d3)" style="fill: #ffffd4; opacity: 0.4"/> @@ -3135,7 +3137,7 @@ C 356.135979 981.24879 362.771082 980.28252 369.045764 978.096662 C 375.320447 975.910803 381.119782 972.545393 386.130836 968.182028 C 391.14189 963.818664 395.272882 958.537264 398.300902 952.622815 C 401.328921 946.708365 403.198508 940.269195 403.808779 933.652762 -" clip-path="url(#pc7f933d9a6)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p51632c909f)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p51632c909f)" style="fill: #ff7f00; opacity: 0.4"/> +" clip-path="url(#p51632c909f)" style="fill: #ffdf86; opacity: 0.4"/> @@ -3388,7 +3390,7 @@ C 71.042568 1108.052973 74.808023 1108.792761 78.619878 1108.949205 C 82.431732 1109.105649 86.245145 1108.676909 89.927097 1107.67794 C 93.609049 1106.678971 97.116227 1105.121525 100.326294 1103.059928 C 103.536361 1100.998331 106.411554 1098.456835 108.851581 1095.524093 -" clip-path="url(#pc72d48ddf3)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p42e7415879)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p42e7415879)" style="fill: #6a3d9a; opacity: 0.4"/> +" clip-path="url(#p42e7415879)" style="fill: #d1b1f2; opacity: 0.4"/> @@ -3496,7 +3498,7 @@ C 328.325994 1123.199022 334.369669 1123.174109 340.271384 1122.105583 C 346.173099 1121.037057 351.841858 1118.941393 357.019427 1115.914057 C 362.196997 1112.886722 366.803547 1108.974391 370.629231 1104.355286 C 374.454916 1099.736182 377.440748 1094.481523 379.450713 1088.83068 -" clip-path="url(#p569c46d3fe)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pf36d2016a4)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#pf36d2016a4)" style="fill: #ffff99; opacity: 0.4"/> +" clip-path="url(#pf36d2016a4)" style="fill: #fffff2; opacity: 0.4"/> @@ -3598,7 +3600,7 @@ C 530.784693 1107.466911 534.886839 1107.612378 538.924667 1107.063326 C 542.962495 1106.514273 546.876857 1105.278745 550.498218 1103.410254 C 554.119579 1101.541762 557.39489 1099.067677 560.182295 1096.095154 C 562.9697 1093.122632 565.228366 1089.695215 566.860469 1085.961349 -" clip-path="url(#p8a564675eb)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p8ed6978197)" style="fill: #c0c0c0; opacity: 0.4"/> +" clip-path="url(#p8ed6978197)" style="fill: #b15928; opacity: 0.4"/> +" clip-path="url(#p8ed6978197)" style="fill: #ffc5a2; opacity: 0.4"/> @@ -3684,7 +3686,7 @@ C 564.78525 1076.492195 565.484191 1081.313908 566.860469 1085.961349 - + - + - + - + - + - + - + - - + + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/docs/img/bioregistry_coverage_bar.svg b/docs/img/bioregistry_coverage_bar.svg index e8f8bb17b..48705aeae 100644 --- a/docs/img/bioregistry_coverage_bar.svg +++ b/docs/img/bioregistry_coverage_bar.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:13:57.577679 + 2023-11-02T01:02:24.118627 image/svg+xml @@ -1262,8 +1262,8 @@ z @@ -1437,10 +1437,10 @@ z " clip-path="url(#pa782b28df6)" style="fill: #ff7f0e; stroke: #ffffff; stroke-linejoin: miter"/> - @@ -1582,8 +1582,8 @@ z @@ -1613,10 +1613,10 @@ z " clip-path="url(#pa782b28df6)" style="fill: #2ca02c; stroke: #ffffff; stroke-linejoin: miter"/> - @@ -1757,10 +1757,10 @@ z " clip-path="url(#pa782b28df6)" style="fill: #2ca02c; stroke: #ffffff; stroke-linejoin: miter"/> - @@ -1846,8 +1846,8 @@ z - - + + - - + @@ -1928,6 +1939,27 @@ Q 1563 4744 2578 4744 Q 2900 4744 3203 4694 Q 3506 4644 3803 4544 z +" transform="scale(0.015625)"/> + @@ -1982,38 +2014,6 @@ z - - + @@ -2215,11 +2215,11 @@ z - - + + - + @@ -2250,7 +2250,7 @@ z - + @@ -2427,13 +2427,13 @@ z - - + + - + @@ -2711,8 +2711,8 @@ z - - + + - + @@ -3157,7 +3157,7 @@ z - + @@ -3169,7 +3169,7 @@ z - + diff --git a/docs/img/bioregistry_coverage_bar_short.svg b/docs/img/bioregistry_coverage_bar_short.svg index 08b127924..7181a4628 100644 --- a/docs/img/bioregistry_coverage_bar_short.svg +++ b/docs/img/bioregistry_coverage_bar_short.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:13:59.585272 + 2023-11-02T01:02:25.639720 image/svg+xml @@ -1249,8 +1249,8 @@ z @@ -1424,10 +1424,10 @@ z " clip-path="url(#p0dfa9ca5de)" style="fill: #ff7f0e; stroke: #ffffff; stroke-linejoin: miter"/> - @@ -1521,8 +1521,8 @@ z @@ -1657,8 +1657,8 @@ z - - + + - - + @@ -1781,6 +1792,27 @@ Q 1563 4744 2578 4744 Q 2900 4744 3203 4694 Q 3506 4644 3803 4544 z +" transform="scale(0.015625)"/> + @@ -1792,38 +1824,6 @@ z - - + @@ -2081,11 +2081,11 @@ z - - + + - + @@ -2262,23 +2262,9 @@ z - - + + - + - + - + @@ -2424,36 +2440,6 @@ Q 1456 2553 1204 2497 Q 953 2441 691 2322 L 691 4666 z -" transform="scale(0.015625)"/> - @@ -2475,6 +2461,22 @@ z + + + diff --git a/docs/img/external_overlap.svg b/docs/img/external_overlap.svg index ad9081c92..826c72487 100644 --- a/docs/img/external_overlap.svg +++ b/docs/img/external_overlap.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:15:00.585493 + 2023-11-02T01:03:01.766520 image/svg+xml @@ -30,52 +30,52 @@ z - + - + - + - + - - + + - - + - + - @@ -206,7 +206,7 @@ z - + - + - + - + - + - + @@ -377,7 +377,7 @@ C 303.156604 95.530355 304.198244 100.148998 306.205663 104.37309 - + - + - + @@ -412,7 +412,7 @@ z - + - + - + - + - + - + @@ -596,14 +596,14 @@ z - + - + @@ -611,7 +611,7 @@ z - + - + - + - + - + - + @@ -847,14 +847,14 @@ z - + - + @@ -862,7 +862,7 @@ z - + - + - + - + - + @@ -958,7 +958,7 @@ C 103.209875 276.334245 105.068673 281.790497 108.494309 286.234734 - + - + - + @@ -1022,7 +1022,7 @@ z - + - + - + - + - + - - + + - - + + - + @@ -1133,7 +1133,7 @@ C 283.763233 276.63553 285.05232 282.477599 287.540449 287.841122 - + @@ -1141,7 +1141,7 @@ C 283.763233 276.63553 285.05232 282.477599 287.540449 287.841122 - + - + - + - + - + @@ -1281,7 +1281,7 @@ C 512.303859 276.290141 513.713399 281.767715 516.400639 286.643364 - + @@ -1289,14 +1289,14 @@ C 512.303859 276.290141 513.713399 281.767715 516.400639 286.643364 - + - + @@ -1304,7 +1304,7 @@ C 512.303859 276.290141 513.713399 281.767715 516.400639 286.643364 - + - + - + - + - + - + @@ -1557,7 +1557,7 @@ C 711.482379 277.548419 713.265317 284.256917 716.653991 290.181731 - + @@ -1565,7 +1565,7 @@ C 711.482379 277.548419 713.265317 284.256917 716.653991 290.181731 - + @@ -1573,7 +1573,7 @@ C 711.482379 277.548419 713.265317 284.256917 716.653991 290.181731 - + @@ -1589,60 +1589,60 @@ C 711.482379 277.548419 713.265317 284.256917 716.653991 290.181731 - + - + - + - + @@ -1650,7 +1650,7 @@ C 113.485334 455.3627 115.168419 459.983325 118.236517 463.636013 - + @@ -1658,14 +1658,14 @@ C 113.485334 455.3627 115.168419 459.983325 118.236517 463.636013 - + - + @@ -1673,7 +1673,7 @@ C 113.485334 455.3627 115.168419 459.983325 118.236517 463.636013 - + @@ -1686,60 +1686,60 @@ C 113.485334 455.3627 115.168419 459.983325 118.236517 463.636013 - + - + - + - + @@ -1747,7 +1747,7 @@ C 328.33297 453.221688 328.87572 455.822851 329.927165 458.232707 - + @@ -1755,13 +1755,13 @@ C 328.33297 453.221688 328.87572 455.822851 329.927165 458.232707 - + - + @@ -1769,7 +1769,7 @@ C 328.33297 453.221688 328.87572 455.822851 329.927165 458.232707 - + @@ -1779,60 +1779,60 @@ C 328.33297 453.221688 328.87572 455.822851 329.927165 458.232707 - + - + - + - + @@ -1840,7 +1840,7 @@ C 536.670202 453.090557 537.113448 455.568973 537.979293 457.912239 - + @@ -1848,13 +1848,13 @@ C 536.670202 453.090557 537.113448 455.568973 537.979293 457.912239 - + - + @@ -1862,7 +1862,7 @@ C 536.670202 453.090557 537.113448 455.568973 537.979293 457.912239 - + - + - + - + - + @@ -1955,7 +1955,7 @@ C 751.550899 454.388566 752.646251 458.10526 754.704962 461.29466 - + @@ -1963,13 +1963,13 @@ C 751.550899 454.388566 752.646251 458.10526 754.704962 461.29466 - + - + @@ -1977,7 +1977,7 @@ C 751.550899 454.388566 752.646251 458.10526 754.704962 461.29466 - + - + - + - + - + - + - + @@ -2085,7 +2085,7 @@ C 90.570321 661.669016 98.42999 666.352307 107.14769 668.055106 - + @@ -2093,7 +2093,7 @@ C 90.570321 661.669016 98.42999 666.352307 107.14769 668.055106 - + @@ -2106,60 +2106,60 @@ C 90.570321 661.669016 98.42999 666.352307 107.14769 668.055106 - + - + - + - + @@ -2167,20 +2167,20 @@ C 345.654567 632.417575 346.220728 634.332063 347.284392 635.973191 - + - + - + @@ -2188,7 +2188,7 @@ C 345.654567 632.417575 346.220728 634.332063 347.284392 635.973191 - + - + - + - + - + - + @@ -2346,7 +2346,7 @@ z - + @@ -2354,7 +2354,7 @@ z - + @@ -2362,7 +2362,7 @@ z - + - + - + - + - + @@ -2491,7 +2491,7 @@ C 749.233858 641.704967 750.884235 644.161058 752.96357 646.226001 - + @@ -2499,14 +2499,14 @@ C 749.233858 641.704967 750.884235 644.161058 752.96357 646.226001 - + - + @@ -2514,7 +2514,7 @@ C 749.233858 641.704967 750.884235 644.161058 752.96357 646.226001 - + @@ -2530,60 +2530,60 @@ C 749.233858 641.704967 750.884235 644.161058 752.96357 646.226001 - + - + - + - + @@ -2591,20 +2591,20 @@ C 131.694457 812.872259 132.576905 815.335963 134.190142 817.299043 - + - + - + @@ -2612,7 +2612,7 @@ C 131.694457 812.872259 132.576905 815.335963 134.190142 817.299043 - + - + - + - + - + - + @@ -2719,7 +2719,7 @@ C 282.441552 815.075199 283.258819 819.783783 284.857434 824.25016 - + @@ -2727,7 +2727,7 @@ C 282.441552 815.075199 283.258819 819.783783 284.857434 824.25016 - + @@ -2735,7 +2735,7 @@ C 282.441552 815.075199 283.258819 819.783783 284.857434 824.25016 - + - +" clip-path="url(#pbbcc72b82e)" style="fill: #a6cee3; opacity: 0.4"/> - +" clip-path="url(#pbbcc72b82e)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -2811,14 +2811,14 @@ z - + - + @@ -2826,7 +2826,7 @@ z - + - + - + - + - + @@ -2928,7 +2928,7 @@ C 742.435975 813.58849 743.089342 816.812782 744.357322 819.81298 - + @@ -2936,13 +2936,13 @@ C 742.435975 813.58849 743.089342 816.812782 744.357322 819.81298 - + - + @@ -2950,7 +2950,7 @@ C 742.435975 813.58849 743.089342 816.812782 744.357322 819.81298 - + - + - + - + - + @@ -3042,7 +3042,7 @@ C 83.592317 991.469428 83.661199 992.737116 83.798658 993.998269 - + @@ -3051,13 +3051,13 @@ C 83.592317 991.469428 83.661199 992.737116 83.798658 993.998269 - + - + @@ -3065,7 +3065,7 @@ C 83.592317 991.469428 83.661199 992.737116 83.798658 993.998269 - + @@ -3078,60 +3078,60 @@ C 83.592317 991.469428 83.661199 992.737116 83.798658 993.998269 - + - + - + - + @@ -3139,7 +3139,7 @@ C 313.660856 992.694729 314.013429 995.176176 314.708097 997.571399 - + @@ -3147,13 +3147,13 @@ C 313.660856 992.694729 314.013429 995.176176 314.708097 997.571399 - + - + @@ -3161,7 +3161,7 @@ C 313.660856 992.694729 314.013429 995.176176 314.708097 997.571399 - + @@ -3170,60 +3170,60 @@ C 313.660856 992.694729 314.013429 995.176176 314.708097 997.571399 - + - + - + - + @@ -3231,7 +3231,7 @@ C 506.877977 991.919194 507.002212 993.635336 507.24971 995.335808 - + @@ -3240,14 +3240,14 @@ C 506.877977 991.919194 507.002212 993.635336 507.24971 995.335808 - + - + @@ -3255,7 +3255,7 @@ C 506.877977 991.919194 507.002212 993.635336 507.24971 995.335808 - + @@ -3267,64 +3267,64 @@ C 506.877977 991.919194 507.002212 993.635336 507.24971 995.335808 - + - + - + - - + + - + - + @@ -3332,14 +3332,14 @@ C 726.533298 995.039066 727.628089 999.815195 729.735431 1004.170407 - + - + @@ -3347,7 +3347,7 @@ C 726.533298 995.039066 727.628089 999.815195 729.735431 1004.170407 - + @@ -3359,68 +3359,68 @@ C 726.533298 995.039066 727.628089 999.815195 729.735431 1004.170407 - + - + - + - - + + - + - + @@ -3428,14 +3428,14 @@ C 92.511562 1173.928546 93.238189 1177.752544 94.653376 1181.341919 - + - + @@ -3443,7 +3443,7 @@ C 92.511562 1173.928546 93.238189 1177.752544 94.653376 1181.341919 - + @@ -3457,64 +3457,64 @@ C 92.511562 1173.928546 93.238189 1177.752544 94.653376 1181.341919 - + - + - + - - + + - + - + @@ -3522,14 +3522,14 @@ C 303.916307 1174.987186 305.081523 1179.834835 307.31615 1184.214629 - + - + @@ -3537,7 +3537,7 @@ C 303.916307 1174.987186 305.081523 1179.834835 307.31615 1184.214629 - + @@ -3546,68 +3546,68 @@ C 303.916307 1174.987186 305.081523 1179.834835 307.31615 1184.214629 - + - + - + - - + + - + - + @@ -3615,14 +3615,14 @@ C 527.193605 1175.569446 528.957818 1180.926214 532.225606 1185.349178 - + - + @@ -3630,7 +3630,7 @@ C 527.193605 1175.569446 528.957818 1180.926214 532.225606 1185.349178 - + @@ -3638,75 +3638,75 @@ C 527.193605 1175.569446 528.957818 1180.926214 532.225606 1185.349178 - + - + - + - - + + - + - - + + - + - + @@ -3714,7 +3714,7 @@ C 706.9574 1175.358719 707.972406 1180.598363 709.947222 1185.504266 - + @@ -3722,7 +3722,7 @@ C 706.9574 1175.358719 707.972406 1180.598363 709.947222 1185.504266 - + @@ -3737,64 +3737,64 @@ C 706.9574 1175.358719 707.972406 1180.598363 709.947222 1185.504266 - + - + - + - - + + - + - + @@ -3802,14 +3802,14 @@ C 88.09129 1355.110953 89.313603 1360.209707 91.658237 1364.818872 - + - + @@ -3817,7 +3817,7 @@ C 88.09129 1355.110953 89.313603 1360.209707 91.658237 1364.818872 - + @@ -3837,67 +3837,67 @@ C 88.09129 1355.110953 89.313603 1360.209707 91.658237 1364.818872 - + - + - + - - + + - + - + @@ -3905,7 +3905,7 @@ C 289.040947 1356.618567 290.793248 1363.181984 294.122204 1368.972072 - + @@ -3913,7 +3913,7 @@ C 289.040947 1356.618567 290.793248 1363.181984 294.122204 1368.972072 - + @@ -3921,7 +3921,7 @@ C 289.040947 1356.618567 290.793248 1363.181984 294.122204 1368.972072 - + @@ -3937,68 +3937,68 @@ C 289.040947 1356.618567 290.793248 1363.181984 294.122204 1368.972072 - + - + - + - - + + - + - + @@ -4006,14 +4006,14 @@ C 536.383677 1355.478159 538.56565 1360.79957 542.453855 1364.743708 - + - + @@ -4021,7 +4021,7 @@ C 536.383677 1355.478159 538.56565 1360.79957 542.453855 1364.743708 - + @@ -4034,68 +4034,68 @@ C 536.383677 1355.478159 538.56565 1360.79957 542.453855 1364.743708 - + - + - + - - + + - - + + - + @@ -4103,13 +4103,13 @@ C 752.494068 1352.24367 752.905858 1354.529188 753.709978 1356.688261 - + - + @@ -4117,7 +4117,7 @@ C 752.494068 1352.24367 752.905858 1354.529188 753.709978 1356.688261 - + @@ -4127,68 +4127,68 @@ C 752.494068 1352.24367 752.905858 1354.529188 753.709978 1356.688261 - + - + - + - - + + - + - + @@ -4196,13 +4196,13 @@ C 111.119108 1532.614131 111.665642 1535.392406 112.728095 1537.988364 - + - + @@ -4210,7 +4210,7 @@ C 111.119108 1532.614131 111.665642 1535.392406 112.728095 1537.988364 - + @@ -4223,68 +4223,68 @@ C 111.119108 1532.614131 111.665642 1535.392406 112.728095 1537.988364 - + - + - + - - + + - + - + @@ -4292,14 +4292,14 @@ C 325.816393 1534.020366 327.127078 1538.128953 329.565738 1541.562189 - + - + @@ -4307,7 +4307,7 @@ C 325.816393 1534.020366 327.127078 1538.128953 329.565738 1541.562189 - + @@ -4324,66 +4324,66 @@ C 325.816393 1534.020366 327.127078 1538.128953 329.565738 1541.562189 - + - + - + - - + + - + - + - + @@ -4391,7 +4391,7 @@ C 513.183539 1559.231334 520.071679 1564.087445 527.933056 1566.47765 - + @@ -4399,7 +4399,7 @@ C 513.183539 1559.231334 520.071679 1564.087445 527.933056 1566.47765 - + @@ -4412,81 +4412,81 @@ C 513.183539 1559.231334 520.071679 1564.087445 527.933056 1566.47765 - + - + - + - - + + - + - + - + - + @@ -4494,7 +4494,7 @@ C 769.756351 1531.808734 770.333886 1533.766377 771.41923 1535.445748 - + @@ -4507,83 +4507,83 @@ C 769.756351 1531.808734 770.333886 1533.766377 771.41923 1535.445748 - + - + - + - + - - + + - + - - + + - + - + @@ -4591,7 +4591,7 @@ C 76.655126 1716.556966 78.511628 1723.309461 82.028029 1729.221018 - + @@ -4608,64 +4608,64 @@ C 76.655126 1716.556966 78.511628 1723.309461 82.028029 1729.221018 - + - + - + - - + + - + - + @@ -4673,14 +4673,14 @@ C 323.597031 1721.652642 325.419171 1724.239148 327.704748 1726.379063 - + - + @@ -4688,7 +4688,7 @@ C 323.597031 1721.652642 325.419171 1724.239148 327.704748 1726.379063 - + @@ -4704,81 +4704,81 @@ C 323.597031 1721.652642 325.419171 1724.239148 327.704748 1726.379063 - + - + - + - - + + - - + + - + - + - + @@ -4786,7 +4786,7 @@ C 555.757563 1712.275596 556.657236 1714.794054 558.302692 1716.803216 - + @@ -4801,81 +4801,67 @@ C 555.757563 1712.275596 556.657236 1714.794054 558.302692 1716.803216 - + - + - + - - + + - + - + @@ -4884,7 +4870,7 @@ C 705.662965 1713.731255 706.250357 1717.762574 707.406799 1721.646703 - + @@ -4892,7 +4878,7 @@ C 705.662965 1713.731255 706.250357 1717.762574 707.406799 1721.646703 - + @@ -4900,7 +4886,7 @@ C 705.662965 1713.731255 706.250357 1717.762574 707.406799 1721.646703 - + @@ -4913,49 +4899,49 @@ C 705.662965 1713.731255 706.250357 1717.762574 707.406799 1721.646703 - +" clip-path="url(#p01caf49307)" style="fill: #1f78b4; opacity: 0.4"/> - +" clip-path="url(#p01caf49307)" style="fill: #ff7f00; opacity: 0.4"/> - - + + - + - + - + @@ -4963,7 +4949,7 @@ z - + @@ -4976,68 +4962,68 @@ z - + - + - + - - + + - + - + @@ -5045,13 +5031,13 @@ C 317.290203 1892.677809 317.88645 1895.779077 319.046989 1898.685683 - + - + @@ -5059,7 +5045,7 @@ C 317.290203 1892.677809 317.88645 1895.779077 319.046989 1898.685683 - + @@ -5069,68 +5055,68 @@ C 317.290203 1892.677809 317.88645 1895.779077 319.046989 1898.685683 - + - + - + - - + + - + - + @@ -5139,13 +5125,13 @@ C 507.481847 1890.996076 507.570761 1892.442707 507.748088 1893.879804 - + - + @@ -5153,7 +5139,7 @@ C 507.481847 1890.996076 507.570761 1892.442707 507.748088 1893.879804 - + @@ -5166,68 +5152,68 @@ C 507.481847 1890.996076 507.570761 1892.442707 507.748088 1893.879804 - + - + - + - - + + - + - + @@ -5235,13 +5221,13 @@ C 737.158242 1892.376324 737.602925 1895.187063 738.475977 1897.877185 - + - + @@ -5249,7 +5235,7 @@ C 737.158242 1892.376324 737.602925 1895.187063 738.475977 1897.877185 - + @@ -5258,68 +5244,68 @@ C 737.158242 1892.376324 737.602925 1895.187063 738.475977 1897.877185 - + - + - + - - + + - + - + @@ -5328,14 +5314,14 @@ C 81.832875 2071.130303 81.955548 2072.840874 82.199951 2074.536116 - + - + @@ -5343,7 +5329,7 @@ C 81.832875 2071.130303 81.955548 2072.840874 82.199951 2074.536116 - + @@ -5355,60 +5341,60 @@ C 81.832875 2071.130303 81.955548 2072.840874 82.199951 2074.536116 - + - + - + - + @@ -5416,7 +5402,7 @@ C 316.240127 2075.286639 318.30477 2080.972743 322.070469 2085.47451 - + @@ -5424,14 +5410,14 @@ C 316.240127 2075.286639 318.30477 2080.972743 322.070469 2085.47451 - + - + @@ -5442,7 +5428,7 @@ C 316.240127 2075.286639 318.30477 2080.972743 322.070469 2085.47451 - + @@ -5456,74 +5442,74 @@ C 316.240127 2075.286639 318.30477 2080.972743 322.070469 2085.47451 - + - + - + - + @@ -5531,13 +5517,13 @@ C 568.880921 2093.997909 571.454648 2090.274074 573.351268 2086.199388 - + - + @@ -5545,7 +5531,7 @@ C 568.880921 2093.997909 571.454648 2090.274074 573.351268 2086.199388 - + @@ -5556,7 +5542,7 @@ C 568.880921 2093.997909 571.454648 2090.274074 573.351268 2086.199388 - + @@ -5565,56 +5551,56 @@ C 568.880921 2093.997909 571.454648 2090.274074 573.351268 2086.199388 - + - + - + - + @@ -5622,7 +5608,7 @@ C 756.991325 2084.769583 760.597509 2087.29377 764.708318 2088.523477 - + @@ -5630,7 +5616,7 @@ C 756.991325 2084.769583 760.597509 2087.29377 764.708318 2088.523477 - + @@ -5638,7 +5624,7 @@ C 756.991325 2084.769583 760.597509 2087.29377 764.708318 2088.523477 - + @@ -5649,7 +5635,7 @@ C 756.991325 2084.769583 760.597509 2087.29377 764.708318 2088.523477 - + @@ -5657,84 +5643,84 @@ C 756.991325 2084.769583 760.597509 2087.29377 764.708318 2088.523477 - + - + - + - + - - + + - + - + - + @@ -5745,7 +5731,7 @@ C 101.736866 2253.85994 102.934458 2258.354145 105.210025 2262.320716 - + @@ -5760,52 +5746,52 @@ C 101.736866 2253.85994 102.934458 2258.354145 105.210025 2262.320716 - + - + - + - + @@ -5813,7 +5799,7 @@ C 312.576974 2268.196629 316.13815 2271.919492 320.451367 2274.58292 - + @@ -5821,7 +5807,7 @@ C 312.576974 2268.196629 316.13815 2271.919492 320.451367 2274.58292 - + @@ -5829,7 +5815,7 @@ C 312.576974 2268.196629 316.13815 2271.919492 320.451367 2274.58292 - + @@ -5840,7 +5826,7 @@ C 312.576974 2268.196629 316.13815 2271.919492 320.451367 2274.58292 - + @@ -5860,56 +5846,56 @@ C 312.576974 2268.196629 316.13815 2271.919492 320.451367 2274.58292 - + - + - + - + @@ -5917,7 +5903,7 @@ C 511.534565 2276.25322 517.275343 2281.13276 524.02604 2284.11277 - + @@ -5925,7 +5911,7 @@ C 511.534565 2276.25322 517.275343 2281.13276 524.02604 2284.11277 - + @@ -5933,7 +5919,7 @@ C 511.534565 2276.25322 517.275343 2281.13276 524.02604 2284.11277 - + @@ -5944,7 +5930,7 @@ C 511.534565 2276.25322 517.275343 2281.13276 524.02604 2284.11277 - + @@ -5960,56 +5946,56 @@ C 511.534565 2276.25322 517.275343 2281.13276 524.02604 2284.11277 - + - + - + - + @@ -6017,21 +6003,21 @@ C 765.829778 2260.366601 768.39946 2262.214505 771.341857 2263.14944 - + - + - + @@ -6042,7 +6028,7 @@ C 765.829778 2260.366601 768.39946 2262.214505 771.341857 2263.14944 - + @@ -6055,56 +6041,56 @@ C 765.829778 2260.366601 768.39946 2262.214505 771.341857 2263.14944 - + - + - + - + @@ -6112,21 +6098,21 @@ C 130.211243 2442.479172 133.959153 2444.095381 137.889791 2444.171047 - + - + - + @@ -6137,7 +6123,7 @@ C 130.211243 2442.479172 133.959153 2444.095381 137.889791 2444.171047 - + @@ -6147,56 +6133,56 @@ C 130.211243 2442.479172 133.959153 2444.095381 137.889791 2444.171047 - + - + - + - + @@ -6204,21 +6190,21 @@ C 338.030751 2443.593321 341.788881 2445.648233 345.895628 2446.241921 - + - + - + @@ -6229,7 +6215,7 @@ C 338.030751 2443.593321 341.788881 2445.648233 345.895628 2446.241921 - + @@ -6242,56 +6228,56 @@ C 338.030751 2443.593321 341.788881 2445.648233 345.895628 2446.241921 - + - + - + - + @@ -6299,21 +6285,21 @@ C 553.449633 2439.502864 555.704479 2441.337874 558.338243 2442.411905 - + - + - + @@ -6324,7 +6310,7 @@ C 553.449633 2439.502864 555.704479 2441.337874 558.338243 2442.411905 - + @@ -6341,56 +6327,56 @@ C 553.449633 2439.502864 555.704479 2441.337874 558.338243 2442.411905 - + - + - + - + @@ -6398,7 +6384,7 @@ C 757.458296 2438.614682 758.912012 2440.651039 760.733109 2442.327791 - + @@ -6406,14 +6392,14 @@ C 757.458296 2438.614682 758.912012 2440.651039 760.733109 2442.327791 - + - + @@ -6424,7 +6410,7 @@ C 757.458296 2438.614682 758.912012 2440.651039 760.733109 2442.327791 - + @@ -6437,60 +6423,60 @@ C 757.458296 2438.614682 758.912012 2440.651039 760.733109 2442.327791 - + - + - + - + @@ -6498,20 +6484,20 @@ C 145.532624 2615.771529 146.545108 2615.780556 147.522265 2615.567978 - + - + - + @@ -6522,7 +6508,7 @@ C 145.532624 2615.771529 146.545108 2615.780556 147.522265 2615.567978 - + @@ -6535,60 +6521,60 @@ C 145.532624 2615.771529 146.545108 2615.780556 147.522265 2615.567978 - + - + - + - + @@ -6596,7 +6582,7 @@ C 315.874695 2613.807545 317.232102 2618.492366 319.788416 2622.533332 - + @@ -6604,14 +6590,14 @@ C 315.874695 2613.807545 317.232102 2618.492366 319.788416 2622.533332 - + - + @@ -6622,7 +6608,7 @@ C 315.874695 2613.807545 317.232102 2618.492366 319.788416 2622.533332 - + @@ -6639,60 +6625,60 @@ C 315.874695 2613.807545 317.232102 2618.492366 319.788416 2622.533332 - + - + - + - + @@ -6700,7 +6686,7 @@ C 549.397594 2612.490831 550.637686 2615.843904 552.892234 2618.475021 - + @@ -6708,14 +6694,14 @@ C 549.397594 2612.490831 550.637686 2615.843904 552.892234 2618.475021 - + - + @@ -6726,7 +6712,7 @@ C 549.397594 2612.490831 550.637686 2615.843904 552.892234 2618.475021 - + @@ -6742,34 +6728,34 @@ C 549.397594 2612.490831 550.637686 2615.843904 552.892234 2618.475021 - +" clip-path="url(#p1772a36b66)" style="fill: #b2df8a; opacity: 0.4"/> - +" clip-path="url(#p1772a36b66)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -6777,14 +6763,14 @@ z - + - + @@ -6795,7 +6781,7 @@ z - + @@ -6810,60 +6796,60 @@ z - + - + - + - + @@ -6871,7 +6857,7 @@ C 98.478003 2793.126094 99.443339 2797.30159 101.300304 2801.103018 - + @@ -6880,14 +6866,14 @@ C 98.478003 2793.126094 99.443339 2797.30159 101.300304 2801.103018 - + - + @@ -6898,7 +6884,7 @@ C 98.478003 2793.126094 99.443339 2797.30159 101.300304 2801.103018 - + @@ -6911,34 +6897,34 @@ C 98.478003 2793.126094 99.443339 2797.30159 101.300304 2801.103018 - +" clip-path="url(#pee19ff03c8)" style="fill: #b2df8a; opacity: 0.4"/> - +" clip-path="url(#pee19ff03c8)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -6946,14 +6932,14 @@ z - + - + @@ -6964,7 +6950,7 @@ z - + @@ -6977,56 +6963,56 @@ z - + - + - + - + @@ -7034,7 +7020,7 @@ C 543.406214 2803.168262 546.45316 2805.745035 550.033356 2807.311256 - + @@ -7042,7 +7028,7 @@ C 543.406214 2803.168262 546.45316 2805.745035 550.033356 2807.311256 - + @@ -7050,7 +7036,7 @@ C 543.406214 2803.168262 546.45316 2805.745035 550.033356 2807.311256 - + @@ -7061,7 +7047,7 @@ C 543.406214 2803.168262 546.45316 2805.745035 550.033356 2807.311256 - + @@ -7071,56 +7057,56 @@ C 543.406214 2803.168262 546.45316 2805.745035 550.033356 2807.311256 - + - + - + - + @@ -7128,7 +7114,7 @@ C 724.994053 2793.439809 725.937891 2797.935125 727.76563 2802.095829 - + @@ -7137,7 +7123,7 @@ C 724.994053 2793.439809 725.937891 2797.935125 727.76563 2802.095829 - + @@ -7145,7 +7131,7 @@ C 724.994053 2793.439809 725.937891 2797.935125 727.76563 2802.095829 - + @@ -7156,7 +7142,7 @@ C 724.994053 2793.439809 725.937891 2797.935125 727.76563 2802.095829 - + @@ -7169,60 +7155,60 @@ C 724.994053 2793.439809 725.937891 2797.935125 727.76563 2802.095829 - + - + - + - + @@ -7230,7 +7216,7 @@ C 113.447672 2972.37015 114.404748 2975.911693 116.220759 2979.026271 - + @@ -7238,14 +7224,14 @@ C 113.447672 2972.37015 114.404748 2975.911693 116.220759 2979.026271 - + - + @@ -7256,7 +7242,7 @@ C 113.447672 2972.37015 114.404748 2975.911693 116.220759 2979.026271 - + @@ -7265,60 +7251,60 @@ C 113.447672 2972.37015 114.404748 2975.911693 116.220759 2979.026271 - + - + - + - + @@ -7326,7 +7312,7 @@ C 304.142468 2971.029533 304.389885 2973.287496 304.880312 2975.498483 - + @@ -7335,14 +7321,14 @@ C 304.142468 2971.029533 304.389885 2973.287496 304.880312 2975.498483 - + - + @@ -7353,7 +7339,7 @@ C 304.142468 2971.029533 304.389885 2973.287496 304.880312 2975.498483 - + @@ -7365,60 +7351,60 @@ C 304.142468 2971.029533 304.389885 2973.287496 304.880312 2975.498483 - + - + - + - + @@ -7426,7 +7412,7 @@ C 529.428544 2974.705609 531.582909 2980.449464 535.489761 2984.92491 - + @@ -7434,14 +7420,14 @@ C 529.428544 2974.705609 531.582909 2980.449464 535.489761 2984.92491 - + - + @@ -7454,7 +7440,7 @@ C 529.428544 2974.705609 531.582909 2980.449464 535.489761 2984.92491 - + @@ -7463,56 +7449,56 @@ C 529.428544 2974.705609 531.582909 2980.449464 535.489761 2984.92491 - + - + - + - + @@ -7520,7 +7506,7 @@ C 756.650697 2978.789678 758.241514 2980.924149 760.225741 2982.653307 - + @@ -7528,14 +7514,14 @@ C 756.650697 2978.789678 758.241514 2980.924149 760.225741 2982.653307 - + - + @@ -7548,7 +7534,7 @@ C 756.650697 2978.789678 758.241514 2980.924149 760.225741 2982.653307 - + @@ -7556,84 +7542,84 @@ C 756.650697 2978.789678 758.241514 2980.924149 760.225741 2982.653307 - + - + - + - + - - + + - + - + - + @@ -7646,7 +7632,7 @@ C 102.543356 3152.330021 103.336405 3155.983113 104.868807 3159.346203 - + @@ -7661,60 +7647,60 @@ C 102.543356 3152.330021 103.336405 3155.983113 104.868807 3159.346203 - + - + - + - + @@ -7722,7 +7708,7 @@ C 316.097542 3153.54341 317.534988 3158.346764 320.231694 3162.448899 - + @@ -7730,14 +7716,14 @@ C 316.097542 3153.54341 317.534988 3158.346764 320.231694 3162.448899 - + - + @@ -7750,7 +7736,7 @@ C 316.097542 3153.54341 317.534988 3158.346764 320.231694 3162.448899 - + @@ -7770,60 +7756,60 @@ C 316.097542 3153.54341 317.534988 3158.346764 320.231694 3162.448899 - + - + - + - + @@ -7831,7 +7817,7 @@ C 525.456708 3154.262 527.244891 3159.746784 530.561894 3164.293092 - + @@ -7839,7 +7825,7 @@ C 525.456708 3154.262 527.244891 3159.746784 530.561894 3164.293092 - + @@ -7847,7 +7833,7 @@ C 525.456708 3154.262 527.244891 3159.746784 530.561894 3164.293092 - + @@ -7860,7 +7846,7 @@ C 525.456708 3154.262 527.244891 3159.746784 530.561894 3164.293092 - + @@ -7876,56 +7862,56 @@ C 525.456708 3154.262 527.244891 3159.746784 530.561894 3164.293092 - + - + - + - + @@ -7933,7 +7919,7 @@ C 764.927604 3157.36601 766.514442 3159.118768 768.450079 3160.414188 - + @@ -7941,14 +7927,14 @@ C 764.927604 3157.36601 766.514442 3159.118768 768.450079 3160.414188 - + - + @@ -7961,7 +7947,7 @@ C 764.927604 3157.36601 766.514442 3159.118768 768.450079 3160.414188 - + @@ -7974,56 +7960,56 @@ C 764.927604 3157.36601 766.514442 3159.118768 768.450079 3160.414188 - + - + - + - + @@ -8031,7 +8017,7 @@ C 128.342435 3336.853243 129.814241 3338.55487 131.61969 3339.843771 - + @@ -8039,14 +8025,14 @@ C 128.342435 3336.853243 129.814241 3338.55487 131.61969 3339.843771 - + - + @@ -8059,7 +8045,7 @@ C 128.342435 3336.853243 129.814241 3338.55487 131.61969 3339.843771 - + @@ -8069,56 +8055,56 @@ C 128.342435 3336.853243 129.814241 3338.55487 131.61969 3339.843771 - + - + - + - + @@ -8126,7 +8112,7 @@ C 336.816907 3337.03146 338.158377 3338.852865 339.833629 3340.335229 - + @@ -8134,14 +8120,14 @@ C 336.816907 3337.03146 338.158377 3338.852865 339.833629 3340.335229 - + - + @@ -8154,7 +8140,7 @@ C 336.816907 3337.03146 338.158377 3338.852865 339.833629 3340.335229 - + @@ -8167,56 +8153,56 @@ C 336.816907 3337.03146 338.158377 3338.852865 339.833629 3340.335229 - + - + - + - + @@ -8224,7 +8210,7 @@ C 552.630519 3336.276675 553.898594 3337.914565 555.473932 3339.221044 - + @@ -8232,14 +8218,14 @@ C 552.630519 3336.276675 553.898594 3337.914565 555.473932 3339.221044 - + - + @@ -8252,7 +8238,7 @@ C 552.630519 3336.276675 553.898594 3337.914565 555.473932 3339.221044 - + @@ -8269,60 +8255,60 @@ C 552.630519 3336.276675 553.898594 3337.914565 555.473932 3339.221044 - + - + - + - + @@ -8330,7 +8316,7 @@ C 755.495646 3332.522554 756.864646 3336.423946 759.375861 3339.561596 - + @@ -8338,14 +8324,14 @@ C 755.495646 3332.522554 756.864646 3336.423946 759.375861 3339.561596 - + - + @@ -8358,7 +8344,7 @@ C 755.495646 3332.522554 756.864646 3336.423946 759.375861 3339.561596 - + @@ -8371,60 +8357,60 @@ C 755.495646 3332.522554 756.864646 3336.423946 759.375861 3339.561596 - + - + - + - + @@ -8432,20 +8418,20 @@ C 144.644368 3515.044322 145.564765 3515.18027 146.484093 3515.127991 - + - + - + @@ -8458,7 +8444,7 @@ C 144.644368 3515.044322 145.564765 3515.18027 146.484093 3515.127991 - + @@ -8471,60 +8457,60 @@ C 144.644368 3515.044322 145.564765 3515.18027 146.484093 3515.127991 - + - + - + - + @@ -8532,7 +8518,7 @@ C 316.300377 3512.51827 317.327733 3516.599464 319.290259 3520.250537 - + @@ -8540,14 +8526,14 @@ C 316.300377 3512.51827 317.327733 3516.599464 319.290259 3520.250537 - + - + @@ -8560,7 +8546,7 @@ C 316.300377 3512.51827 317.327733 3516.599464 319.290259 3520.250537 - + @@ -8577,60 +8563,60 @@ C 316.300377 3512.51827 317.327733 3516.599464 319.290259 3520.250537 - + - + - + - + @@ -8638,7 +8624,7 @@ C 549.523732 3511.116567 550.301906 3513.804499 551.76753 3516.123585 - + @@ -8646,13 +8632,13 @@ C 549.523732 3511.116567 550.301906 3513.804499 551.76753 3516.123585 - + - + @@ -8665,7 +8651,7 @@ C 549.523732 3511.116567 550.301906 3513.804499 551.76753 3516.123585 - + @@ -8681,60 +8667,60 @@ C 549.523732 3511.116567 550.301906 3513.804499 551.76753 3516.123585 - + - + - + - + @@ -8742,20 +8728,20 @@ C 776.327927 3510.03024 776.924154 3511.633235 778.007023 3512.887535 - + - + - + @@ -8768,7 +8754,7 @@ C 776.327927 3510.03024 776.924154 3511.633235 778.007023 3512.887535 - + @@ -8783,60 +8769,60 @@ C 776.327927 3510.03024 776.924154 3511.633235 778.007023 3512.887535 - + - + - + - + @@ -8844,7 +8830,7 @@ C 99.166321 3691.72581 99.827951 3695.177503 101.11596 3698.413797 - + @@ -8853,14 +8839,14 @@ C 99.166321 3691.72581 99.827951 3695.177503 101.11596 3698.413797 - + - + @@ -8873,7 +8859,7 @@ C 99.166321 3691.72581 99.827951 3695.177503 101.11596 3698.413797 - + @@ -8886,34 +8872,34 @@ C 99.166321 3691.72581 99.827951 3695.177503 101.11596 3698.413797 - +" clip-path="url(#pf2faf6cc79)" style="fill: #33a02c; opacity: 0.4"/> - +" clip-path="url(#pf2faf6cc79)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -8921,14 +8907,14 @@ z - + - + @@ -8941,7 +8927,7 @@ z - + @@ -8954,56 +8940,56 @@ z - + - + - + - + @@ -9011,7 +8997,7 @@ C 543.321096 3697.970226 544.779327 3700.081617 546.611906 3701.840563 - + @@ -9019,14 +9005,14 @@ C 543.321096 3697.970226 544.779327 3700.081617 546.611906 3701.840563 - + - + @@ -9039,7 +9025,7 @@ C 543.321096 3697.970226 544.779327 3700.081617 546.611906 3701.840563 - + @@ -9049,60 +9035,60 @@ C 543.321096 3697.970226 544.779327 3700.081617 546.611906 3701.840563 - + - + - + - + @@ -9110,7 +9096,7 @@ C 728.345883 3691.045669 728.722863 3693.836022 729.466675 3696.538575 - + @@ -9119,14 +9105,14 @@ C 728.345883 3691.045669 728.722863 3693.836022 729.466675 3696.538575 - + - + @@ -9139,7 +9125,7 @@ C 728.345883 3691.045669 728.722863 3693.836022 729.466675 3696.538575 - + @@ -9152,60 +9138,60 @@ C 728.345883 3691.045669 728.722863 3693.836022 729.466675 3696.538575 - + - + - + - + @@ -9213,7 +9199,7 @@ C 112.522312 3872.09934 113.667745 3876.003906 115.821757 3879.35927 - + @@ -9221,14 +9207,14 @@ C 112.522312 3872.09934 113.667745 3876.003906 115.821757 3879.35927 - + - + @@ -9241,7 +9227,7 @@ C 112.522312 3872.09934 113.667745 3876.003906 115.821757 3879.35927 - + @@ -9250,60 +9236,60 @@ C 112.522312 3872.09934 113.667745 3876.003906 115.821757 3879.35927 - + - + - + - + @@ -9311,7 +9297,7 @@ C 303.60227 3870.442957 303.862195 3872.76658 304.377224 3875.039843 - + @@ -9320,14 +9306,14 @@ C 303.60227 3870.442957 303.862195 3872.76658 304.377224 3875.039843 - + - + @@ -9340,7 +9326,7 @@ C 303.60227 3870.442957 303.862195 3872.76658 304.377224 3875.039843 - + @@ -9352,56 +9338,56 @@ C 303.60227 3870.442957 303.862195 3872.76658 304.377224 3875.039843 - + - + - + - + @@ -9409,7 +9395,7 @@ C 542.259787 3884.168505 545.950042 3886.872865 550.188685 3888.275799 - + @@ -9417,7 +9403,7 @@ C 542.259787 3884.168505 545.950042 3886.872865 550.188685 3888.275799 - + @@ -9425,7 +9411,7 @@ C 542.259787 3884.168505 545.950042 3886.872865 550.188685 3888.275799 - + @@ -9433,7 +9419,7 @@ C 542.259787 3884.168505 545.950042 3886.872865 550.188685 3888.275799 - + @@ -9441,84 +9427,84 @@ C 542.259787 3884.168505 545.950042 3886.872865 550.188685 3888.275799 - + - + - + - + - - + + - + - + - + @@ -9526,7 +9512,7 @@ C 736.872483 3872.493573 737.936697 3876.810204 739.973319 3880.689591 - + @@ -9541,52 +9527,52 @@ C 736.872483 3872.493573 737.936697 3876.810204 739.973319 3880.689591 - + - + - + - + @@ -9594,7 +9580,7 @@ C 96.756908 4067.092789 100.190864 4070.95132 104.388598 4073.83017 - + @@ -9602,7 +9588,7 @@ C 96.756908 4067.092789 100.190864 4070.95132 104.388598 4073.83017 - + @@ -9610,7 +9596,7 @@ C 96.756908 4067.092789 100.190864 4070.95132 104.388598 4073.83017 - + @@ -9618,7 +9604,7 @@ C 96.756908 4067.092789 100.190864 4070.95132 104.388598 4073.83017 - + @@ -9638,63 +9624,63 @@ C 96.756908 4067.092789 100.190864 4070.95132 104.388598 4073.83017 - + - + - + - + - + @@ -9702,7 +9688,7 @@ C 287.384043 4069.251792 290.548798 4073.879326 294.529653 4077.747277 - + @@ -9710,7 +9696,7 @@ C 287.384043 4069.251792 290.548798 4073.879326 294.529653 4077.747277 - + @@ -9718,7 +9704,7 @@ C 287.384043 4069.251792 290.548798 4073.879326 294.529653 4077.747277 - + @@ -9734,56 +9720,56 @@ C 287.384043 4069.251792 290.548798 4073.879326 294.529653 4077.747277 - + - + - + - + @@ -9791,21 +9777,21 @@ C 551.645425 4059.195041 554.107295 4061.170712 556.976576 4062.310396 - + - + - + @@ -9813,7 +9799,7 @@ C 551.645425 4059.195041 554.107295 4061.170712 556.976576 4062.310396 - + @@ -9826,56 +9812,56 @@ C 551.645425 4059.195041 554.107295 4061.170712 556.976576 4062.310396 - + - + - + - + @@ -9883,21 +9869,21 @@ C 765.127139 4061.894164 768.924048 4063.70357 772.975166 4063.984956 - + - + - + @@ -9905,7 +9891,7 @@ C 765.127139 4061.894164 768.924048 4063.70357 772.975166 4063.984956 - + @@ -9915,56 +9901,56 @@ C 765.127139 4061.894164 768.924048 4063.70357 772.975166 4063.984956 - + - + - + - + @@ -9972,21 +9958,21 @@ C 123.504276 4242.64824 127.191521 4244.903797 131.299844 4245.772544 - + - + - + @@ -9994,7 +9980,7 @@ C 123.504276 4242.64824 127.191521 4244.903797 131.299844 4245.772544 - + @@ -10007,56 +9993,56 @@ C 123.504276 4242.64824 127.191521 4244.903797 131.299844 4245.772544 - + - + - + - + @@ -10064,21 +10050,21 @@ C 339.348912 4238.486012 341.577412 4240.435078 344.209307 4241.656632 - + - + - + @@ -10086,7 +10072,7 @@ C 339.348912 4238.486012 341.577412 4240.435078 344.209307 4241.656632 - + @@ -10103,60 +10089,60 @@ C 339.348912 4238.486012 341.577412 4240.435078 344.209307 4241.656632 - + - + - + - + @@ -10164,7 +10150,7 @@ C 540.884742 4232.789901 542.828289 4237.535719 546.292536 4241.055922 - + @@ -10172,14 +10158,14 @@ C 540.884742 4232.789901 542.828289 4237.535719 546.292536 4241.055922 - + - + @@ -10187,7 +10173,7 @@ C 540.884742 4232.789901 542.828289 4237.535719 546.292536 4241.055922 - + @@ -10200,60 +10186,60 @@ C 540.884742 4232.789901 542.828289 4237.535719 546.292536 4241.055922 - + - + - + - + @@ -10261,20 +10247,20 @@ C 781.40908 4235.038224 782.441558 4235.123736 783.457303 4234.99098 - + - + - + @@ -10282,7 +10268,7 @@ C 781.40908 4235.038224 782.441558 4235.123736 783.457303 4234.99098 - + @@ -10295,60 +10281,60 @@ C 781.40908 4235.038224 782.441558 4235.123736 783.457303 4234.99098 - + - + - + - + @@ -10356,7 +10342,7 @@ C 101.721154 4412.373031 102.960633 4416.942695 105.311609 4420.9576 - + @@ -10364,14 +10350,14 @@ C 101.721154 4412.373031 102.960633 4416.942695 105.311609 4420.9576 - + - + @@ -10379,7 +10365,7 @@ C 101.721154 4412.373031 102.960633 4416.942695 105.311609 4420.9576 - + @@ -10396,60 +10382,60 @@ C 101.721154 4412.373031 102.960633 4416.942695 105.311609 4420.9576 - + - + - + - + @@ -10457,7 +10443,7 @@ C 335.417715 4411.266995 336.643097 4414.706896 338.885312 4417.45471 - + @@ -10465,14 +10451,14 @@ C 335.417715 4411.266995 336.643097 4414.706896 338.885312 4417.45471 - + - + @@ -10480,7 +10466,7 @@ C 335.417715 4411.266995 336.643097 4414.706896 338.885312 4417.45471 - + @@ -10496,34 +10482,34 @@ C 335.417715 4411.266995 336.643097 4414.706896 338.885312 4417.45471 - +" clip-path="url(#pfa3eb74884)" style="fill: #fb9a99; opacity: 0.4"/> - +" clip-path="url(#pfa3eb74884)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -10531,14 +10517,14 @@ z - + - + @@ -10546,7 +10532,7 @@ z - + @@ -10561,60 +10547,60 @@ z - + - + - + - + @@ -10622,7 +10608,7 @@ C 733.615625 4411.791216 734.482674 4415.815685 736.158918 4419.525318 - + @@ -10631,14 +10617,14 @@ C 733.615625 4411.791216 734.482674 4415.815685 736.158918 4419.525318 - + - + @@ -10646,7 +10632,7 @@ C 733.615625 4411.791216 734.482674 4415.815685 736.158918 4419.525318 - + @@ -10659,34 +10645,34 @@ C 733.615625 4411.791216 734.482674 4415.815685 736.158918 4419.525318 - +" clip-path="url(#p8cd110067c)" style="fill: #fb9a99; opacity: 0.4"/> - +" clip-path="url(#p8cd110067c)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -10694,14 +10680,14 @@ z - + - + @@ -10709,7 +10695,7 @@ z - + @@ -10722,56 +10708,56 @@ z - + - + - + - + @@ -10779,7 +10765,7 @@ C 328.717633 4602.460006 331.821254 4605.193655 335.490553 4606.917521 - + @@ -10787,7 +10773,7 @@ C 328.717633 4602.460006 331.821254 4605.193655 335.490553 4606.917521 - + @@ -10795,7 +10781,7 @@ C 328.717633 4602.460006 331.821254 4605.193655 335.490553 4606.917521 - + @@ -10803,7 +10789,7 @@ C 328.717633 4602.460006 331.821254 4605.193655 335.490553 4606.917521 - + @@ -10813,56 +10799,56 @@ C 328.717633 4602.460006 331.821254 4605.193655 335.490553 4606.917521 - + - + - + - + @@ -10870,7 +10856,7 @@ C 511.240531 4591.913546 512.076881 4596.196652 513.703396 4600.202693 - + @@ -10879,7 +10865,7 @@ C 511.240531 4591.913546 512.076881 4596.196652 513.703396 4600.202693 - + @@ -10887,7 +10873,7 @@ C 511.240531 4591.913546 512.076881 4596.196652 513.703396 4600.202693 - + @@ -10895,7 +10881,7 @@ C 511.240531 4591.913546 512.076881 4596.196652 513.703396 4600.202693 - + @@ -10908,60 +10894,60 @@ C 511.240531 4591.913546 512.076881 4596.196652 513.703396 4600.202693 - + - + - + - + @@ -10969,7 +10955,7 @@ C 748.262904 4591.326375 749.241136 4594.998547 751.099951 4598.239851 - + @@ -10977,14 +10963,14 @@ C 748.262904 4591.326375 749.241136 4594.998547 751.099951 4598.239851 - + - + @@ -10992,7 +10978,7 @@ C 748.262904 4591.326375 749.241136 4594.998547 751.099951 4598.239851 - + @@ -11001,60 +10987,60 @@ C 748.262904 4591.326375 749.241136 4594.998547 751.099951 4598.239851 - + - + - + - + @@ -11062,7 +11048,7 @@ C 90.35961 4769.59609 90.574874 4771.727401 91.00214 4773.820982 - + @@ -11071,14 +11057,14 @@ C 90.35961 4769.59609 90.574874 4771.727401 91.00214 4773.820982 - + - + @@ -11086,7 +11072,7 @@ C 90.35961 4769.59609 90.574874 4771.727401 91.00214 4773.820982 - + @@ -11098,91 +11084,91 @@ C 90.35961 4769.59609 90.574874 4771.727401 91.00214 4773.820982 - + - + - + - + - - + + - + - + - + - + @@ -11197,56 +11183,56 @@ C 302.179622 4771.258521 302.856293 4775.027497 304.177875 4778.58939 - + - + - + - + @@ -11254,7 +11240,7 @@ C 510.471245 4773.755791 512.228528 4779.929014 515.544539 4785.281507 - + @@ -11262,7 +11248,7 @@ C 510.471245 4773.755791 512.228528 4779.929014 515.544539 4785.281507 - + @@ -11270,14 +11256,14 @@ C 510.471245 4773.755791 512.228528 4779.929014 515.544539 4785.281507 - + - + @@ -11297,56 +11283,56 @@ C 510.471245 4773.755791 512.228528 4779.929014 515.544539 4785.281507 - + - + - + - + @@ -11354,7 +11340,7 @@ C 719.30669 4773.952832 721.088892 4780.323441 724.45834 4785.874302 - + @@ -11362,7 +11348,7 @@ C 719.30669 4773.952832 721.088892 4780.323441 724.45834 4785.874302 - + @@ -11370,14 +11356,14 @@ C 719.30669 4773.952832 721.088892 4780.323441 724.45834 4785.874302 - + - + @@ -11393,56 +11379,56 @@ C 719.30669 4773.952832 721.088892 4780.323441 724.45834 4785.874302 - + - + - + - + @@ -11450,7 +11436,7 @@ C 115.504055 4959.061227 117.434243 4961.525275 119.829085 4963.480966 - + @@ -11458,21 +11444,21 @@ C 115.504055 4959.061227 117.434243 4961.525275 119.829085 4963.480966 - + - + - + @@ -11485,56 +11471,56 @@ C 115.504055 4959.061227 117.434243 4961.525275 119.829085 4963.480966 - + - + - + - + @@ -11542,28 +11528,28 @@ C 327.726223 4961.577273 330.522967 4964.312844 333.879896 4966.185534 - + - + - + - + @@ -11573,56 +11559,56 @@ C 327.726223 4961.577273 330.522967 4964.312844 333.879896 4966.185534 - + - + - + - + @@ -11630,7 +11616,7 @@ C 534.703412 4961.870877 537.289307 4964.822066 540.456414 4967.042387 - + @@ -11638,21 +11624,21 @@ C 534.703412 4961.870877 537.289307 4964.822066 540.456414 4967.042387 - + - + - + @@ -11665,60 +11651,60 @@ C 534.703412 4961.870877 537.289307 4964.822066 540.456414 4967.042387 - + - + - + - + @@ -11726,7 +11712,7 @@ C 750.541381 4952.470123 752.507956 4957.421628 756.035444 4961.161938 - + @@ -11734,21 +11720,21 @@ C 750.541381 4952.470123 752.507956 4957.421628 756.035444 4961.161938 - + - + - + @@ -11765,60 +11751,60 @@ C 750.541381 4952.470123 752.507956 4957.421628 756.035444 4961.161938 - + - + - + - + @@ -11826,7 +11812,7 @@ C 104.343891 5132.630433 106.124889 5137.915626 109.412602 5142.239905 - + @@ -11834,21 +11820,21 @@ C 104.343891 5132.630433 106.124889 5137.915626 109.412602 5142.239905 - + - + - + @@ -11861,56 +11847,56 @@ C 104.343891 5132.630433 106.124889 5137.915626 109.412602 5142.239905 - + - + - + - + @@ -11918,27 +11904,27 @@ C 347.787596 5135.448457 349.742502 5136.791262 351.963965 5137.427404 - + - + - + - + @@ -11951,60 +11937,60 @@ C 347.787596 5135.448457 349.742502 5136.791262 351.963965 5137.427404 - + - + - + - + @@ -12012,7 +11998,7 @@ C 515.822331 5131.313787 516.633118 5135.389279 518.208279 5139.191436 - + @@ -12020,21 +12006,21 @@ C 515.822331 5131.313787 516.633118 5135.389279 518.208279 5139.191436 - + - + - + @@ -12051,60 +12037,60 @@ C 515.822331 5131.313787 516.633118 5135.389279 518.208279 5139.191436 - + - + - + - + @@ -12112,7 +12098,7 @@ C 749.464135 5131.160904 750.597292 5135.042115 752.729412 5138.382261 - + @@ -12120,21 +12106,21 @@ C 749.464135 5131.160904 750.597292 5135.042115 752.729412 5138.382261 - + - + - + @@ -12150,34 +12136,34 @@ C 749.464135 5131.160904 750.597292 5135.042115 752.729412 5138.382261 - +" clip-path="url(#pea480c6605)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#pea480c6605)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -12185,21 +12171,21 @@ z - + - + - + @@ -12214,56 +12200,56 @@ z - + - + - + - + @@ -12271,7 +12257,7 @@ C 299.408459 5310.549483 299.954017 5314.009843 301.025255 5317.322715 - + @@ -12280,21 +12266,21 @@ C 299.408459 5310.549483 299.954017 5314.009843 301.025255 5317.322715 - + - + - + @@ -12307,34 +12293,34 @@ C 299.408459 5310.549483 299.954017 5314.009843 301.025255 5317.322715 - +" clip-path="url(#p79aa2b868a)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#p79aa2b868a)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -12342,21 +12328,21 @@ z - + - + - + @@ -12369,56 +12355,56 @@ z - + - + - + - + @@ -12426,7 +12412,7 @@ C 737.168135 5313.970151 739.835689 5320.612401 744.609783 5325.597538 - + @@ -12434,21 +12420,21 @@ C 737.168135 5313.970151 739.835689 5320.612401 744.609783 5325.597538 - + - + - + @@ -12458,56 +12444,56 @@ C 737.168135 5313.970151 739.835689 5320.612401 744.609783 5325.597538 - + - + - + - + @@ -12515,7 +12501,7 @@ C 80.43999 5489.884975 80.797028 5492.821955 81.503298 5495.683897 - + @@ -12524,21 +12510,21 @@ C 80.43999 5489.884975 80.797028 5492.821955 81.503298 5495.683897 - + - + - + @@ -12551,60 +12537,60 @@ C 80.43999 5489.884975 80.797028 5492.821955 81.503298 5495.683897 - + - + - + - + @@ -12612,7 +12598,7 @@ C 313.364922 5490.11504 313.934807 5493.267306 315.047468 5496.244018 - + @@ -12620,21 +12606,21 @@ C 313.364922 5490.11504 313.934807 5493.267306 315.047468 5496.244018 - + - + - + @@ -12643,60 +12629,60 @@ C 313.364922 5490.11504 313.934807 5493.267306 315.047468 5496.244018 - + - + - + - + @@ -12704,7 +12690,7 @@ C 507.410114 5488.548888 507.520173 5490.158723 507.739522 5491.75544 - + @@ -12713,20 +12699,20 @@ C 507.410114 5488.548888 507.520173 5490.158723 507.739522 5491.75544 - + - + - + @@ -12738,68 +12724,68 @@ C 507.410114 5488.548888 507.520173 5490.158723 507.739522 5491.75544 - + - + - + - - + + - + - + @@ -12807,14 +12793,14 @@ C 744.834999 5491.913845 746.445693 5496.759325 749.425085 5500.745611 - + - + @@ -12828,7 +12814,7 @@ C 744.834999 5491.913845 746.445693 5496.759325 749.425085 5500.745611 - + @@ -12848,60 +12834,60 @@ C 744.834999 5491.913845 746.445693 5496.759325 749.425085 5500.745611 - + - + - + - - + + - + - + @@ -12909,7 +12895,7 @@ C 106.0698 5680.874775 108.306464 5683.868071 111.095512 5686.290506 - + @@ -12917,7 +12903,7 @@ C 106.0698 5680.874775 108.306464 5683.868071 111.095512 5686.290506 - + @@ -12931,7 +12917,7 @@ C 106.0698 5680.874775 108.306464 5683.868071 111.095512 5686.290506 - + @@ -12947,79 +12933,79 @@ C 106.0698 5680.874775 108.306464 5683.868071 111.095512 5686.290506 - + - + - + - - + + - + - + - + - + @@ -13033,7 +13019,7 @@ C 343.717082 5675.064194 345.345112 5676.645018 347.297243 5677.721595 - + @@ -13046,69 +13032,69 @@ C 343.717082 5675.064194 345.345112 5676.645018 347.297243 5677.721595 - + - + - + - - + + - - + + - + @@ -13116,13 +13102,13 @@ C 555.022351 5669.031475 555.659161 5671.210517 556.857229 5673.085236 - + - + @@ -13136,7 +13122,7 @@ C 555.022351 5669.031475 555.659161 5671.210517 556.857229 5673.085236 - + @@ -13146,69 +13132,69 @@ C 555.022351 5669.031475 555.659161 5671.210517 556.857229 5673.085236 - + - + - + - - + + - - + + - + @@ -13216,13 +13202,13 @@ C 764.188074 5669.003869 764.732461 5671.167259 765.772421 5673.102806 - + - + @@ -13236,7 +13222,7 @@ C 764.188074 5669.003869 764.732461 5671.167259 765.772421 5673.102806 - + @@ -13249,69 +13235,69 @@ C 764.188074 5669.003869 764.732461 5671.167259 765.772421 5673.102806 - + - + - + - - + + - + - + @@ -13319,14 +13305,14 @@ C 129.756776 5849.678778 130.88733 5852.574095 132.922055 5854.782277 - + - + @@ -13340,7 +13326,7 @@ C 129.756776 5849.678778 130.88733 5852.574095 132.922055 5854.782277 - + @@ -13357,75 +13343,75 @@ C 129.756776 5849.678778 130.88733 5852.574095 132.922055 5854.782277 - + - + - + - - + + - + - + - + @@ -13433,7 +13419,7 @@ C 347.209998 5866.710074 350.529369 5866.117315 353.551995 5864.74438 - + @@ -13447,7 +13433,7 @@ C 347.209998 5866.710074 350.529369 5866.117315 353.551995 5864.74438 - + @@ -13460,82 +13446,82 @@ C 347.209998 5866.710074 350.529369 5866.117315 353.551995 5864.74438 - + - + - + - - + + - + - + - + - + @@ -13549,7 +13535,7 @@ C 566.800978 5847.774307 567.131945 5848.847451 567.750513 5849.754903 - + @@ -13562,60 +13548,60 @@ C 566.800978 5847.774307 567.131945 5848.847451 567.750513 5849.754903 - + - + - + - - + + - - + + - + @@ -13623,7 +13609,7 @@ C 743.427971 5861.428072 745.902629 5864.501806 748.963719 5866.912089 - + @@ -13631,7 +13617,7 @@ C 743.427971 5861.428072 745.902629 5864.501806 748.963719 5866.912089 - + @@ -13645,7 +13631,7 @@ C 743.427971 5861.428072 745.902629 5864.501806 748.963719 5866.912089 - + @@ -13662,65 +13648,65 @@ C 743.427971 5861.428072 745.902629 5864.501806 748.963719 5866.912089 - + - + - + - - + + - - + + - + @@ -13728,14 +13714,14 @@ C 129.58409 6035.866807 131.486944 6037.609062 133.749532 6038.743878 - + - + @@ -13749,7 +13735,7 @@ C 129.58409 6035.866807 131.486944 6037.609062 133.749532 6038.743878 - + @@ -13765,78 +13751,78 @@ C 129.58409 6035.866807 131.486944 6037.609062 133.749532 6038.743878 - + - + - + - - + + - - + + - + - + - + @@ -13850,7 +13836,7 @@ C 354.68727 6030.635428 355.511753 6031.406735 356.495161 6031.917691 - + @@ -13865,67 +13851,67 @@ C 354.68727 6030.635428 355.511753 6031.406735 356.495161 6031.917691 - + - + - + - - - - + + + + - + @@ -13933,7 +13919,7 @@ C 492.949289 6036.892755 496.762367 6046.885647 503.655302 6054.602664 - + @@ -13942,7 +13928,7 @@ C 492.949289 6036.892755 496.762367 6046.885647 503.655302 6054.602664 - + @@ -13956,7 +13942,7 @@ C 492.949289 6036.892755 496.762367 6046.885647 503.655302 6054.602664 - + @@ -13969,50 +13955,50 @@ C 492.949289 6036.892755 496.762367 6046.885647 503.655302 6054.602664 - +" clip-path="url(#pa930f3f36f)" style="fill: #fdbf6f; opacity: 0.4"/> - +" clip-path="url(#pa930f3f36f)" style="fill: #ff7f00; opacity: 0.4"/> - - + + - + - + - + @@ -14026,7 +14012,7 @@ z - + @@ -14039,69 +14025,69 @@ z - + - + - + - - + + - + - + @@ -14109,14 +14095,14 @@ C 122.171085 6209.166334 122.883118 6211.871413 124.237687 6214.266204 - + - + @@ -14130,7 +14116,7 @@ C 122.171085 6209.166334 122.883118 6211.871413 124.237687 6214.266204 - + @@ -14140,69 +14126,69 @@ C 122.171085 6209.166334 122.883118 6211.871413 124.237687 6214.266204 - + - + - + - - + + - + - + @@ -14211,13 +14197,13 @@ C 308.932586 6207.916585 309.050028 6209.41588 309.283836 6210.899158 - + - + @@ -14231,7 +14217,7 @@ C 308.932586 6207.916585 309.050028 6209.41588 309.283836 6210.899158 - + @@ -14244,69 +14230,69 @@ C 308.932586 6207.916585 309.050028 6209.41588 309.283836 6210.899158 - + - + - + - - + + - - + + - + @@ -14314,14 +14300,14 @@ C 541.519026 6209.884439 542.489791 6213.285644 544.321091 6216.232404 - + - + @@ -14335,7 +14321,7 @@ C 541.519026 6209.884439 542.489791 6213.285644 544.321091 6216.232404 - + @@ -14344,69 +14330,69 @@ C 541.519026 6209.884439 542.489791 6213.285644 544.321091 6216.232404 - + - + - + - - + + - + - + @@ -14415,14 +14401,14 @@ C 732.163035 6208.399568 732.363688 6210.379067 732.76193 6212.323274 - + - + @@ -14436,7 +14422,7 @@ C 732.163035 6208.399568 732.363688 6210.379067 732.76193 6212.323274 - + @@ -14448,52 +14434,52 @@ C 732.163035 6208.399568 732.363688 6210.379067 732.76193 6212.323274 - + - + - + - + @@ -14501,7 +14487,7 @@ C 98.415416 6405.356656 101.926745 6409.158968 106.199116 6411.937492 - + @@ -14509,7 +14495,7 @@ C 98.415416 6405.356656 101.926745 6409.158968 106.199116 6411.937492 - + @@ -14517,7 +14503,7 @@ C 98.415416 6405.356656 101.926745 6409.158968 106.199116 6411.937492 - + @@ -14536,7 +14522,7 @@ C 98.415416 6405.356656 101.926745 6409.158968 106.199116 6411.937492 - + @@ -14552,56 +14538,56 @@ C 98.415416 6405.356656 101.926745 6409.158968 106.199116 6411.937492 - + - + - + - + @@ -14609,21 +14595,21 @@ C 341.270027 6394.990294 342.903221 6396.708054 344.882894 6397.941611 - + - + - + @@ -14642,7 +14628,7 @@ C 341.270027 6394.990294 342.903221 6396.708054 344.882894 6397.941611 - + @@ -14655,56 +14641,56 @@ C 341.270027 6394.990294 342.903221 6396.708054 344.882894 6397.941611 - + - + - + - + @@ -14712,21 +14698,21 @@ C 554.765239 6398.299197 557.878477 6400.022784 561.287873 6400.540054 - + - + - + @@ -14745,7 +14731,7 @@ C 554.765239 6398.299197 557.878477 6400.022784 561.287873 6400.540054 - + @@ -14755,56 +14741,56 @@ C 554.765239 6398.299197 557.878477 6400.022784 561.287873 6400.540054 - + - + - + - + @@ -14812,7 +14798,7 @@ C 762.794074 6399.061498 765.817969 6401.144073 769.255699 6402.134626 - + @@ -14820,14 +14806,14 @@ C 762.794074 6399.061498 765.817969 6401.144073 769.255699 6402.134626 - + - + @@ -14846,7 +14832,7 @@ C 762.794074 6399.061498 765.817969 6401.144073 769.255699 6402.134626 - + @@ -14859,56 +14845,56 @@ C 762.794074 6399.061498 765.817969 6401.144073 769.255699 6402.134626 - + - + - + - + @@ -14916,7 +14902,7 @@ C 128.909224 6573.546325 130.098302 6575.11246 131.578575 6576.371836 - + @@ -14924,14 +14910,14 @@ C 128.909224 6573.546325 130.098302 6575.11246 131.578575 6576.371836 - + - + @@ -14950,7 +14936,7 @@ C 128.909224 6573.546325 130.098302 6575.11246 131.578575 6576.371836 - + @@ -14967,56 +14953,56 @@ C 128.909224 6573.546325 130.098302 6575.11246 131.578575 6576.371836 - + - + - + - + @@ -15024,7 +15010,7 @@ C 333.328122 6576.62917 335.122644 6578.792194 337.334837 6580.464833 - + @@ -15032,14 +15018,14 @@ C 333.328122 6576.62917 335.122644 6578.792194 337.334837 6580.464833 - + - + @@ -15058,7 +15044,7 @@ C 333.328122 6576.62917 335.122644 6578.792194 337.334837 6580.464833 - + @@ -15071,60 +15057,60 @@ C 333.328122 6576.62917 335.122644 6578.792194 337.334837 6580.464833 - + - + - + - + @@ -15132,20 +15118,20 @@ C 569.562784 6572.553997 570.447026 6572.682645 571.329806 6572.630249 - + - + - + @@ -15164,7 +15150,7 @@ C 569.562784 6572.553997 570.447026 6572.682645 571.329806 6572.630249 - + @@ -15177,60 +15163,60 @@ C 569.562784 6572.553997 570.447026 6572.682645 571.329806 6572.630249 - + - + - + - + @@ -15238,7 +15224,7 @@ C 740.946115 6570.987261 742.346694 6575.718618 744.97769 6579.773148 - + @@ -15246,14 +15232,14 @@ C 740.946115 6570.987261 742.346694 6575.718618 744.97769 6579.773148 - + - + @@ -15272,7 +15258,7 @@ C 740.946115 6570.987261 742.346694 6575.718618 744.97769 6579.773148 - + @@ -15289,60 +15275,60 @@ C 740.946115 6570.987261 742.346694 6575.718618 744.97769 6579.773148 - + - + - + - + @@ -15350,7 +15336,7 @@ C 125.517899 6749.145382 126.548945 6752.181693 128.450035 6754.658161 - + @@ -15358,14 +15344,14 @@ C 125.517899 6749.145382 126.548945 6752.181693 128.450035 6754.658161 - + - + @@ -15384,7 +15370,7 @@ C 125.517899 6749.145382 126.548945 6752.181693 128.450035 6754.658161 - + @@ -15400,34 +15386,34 @@ C 125.517899 6749.145382 126.548945 6752.181693 128.450035 6754.658161 - +" clip-path="url(#p3f4194561d)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#p3f4194561d)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -15435,14 +15421,14 @@ z - + - + @@ -15461,7 +15447,7 @@ z - + @@ -15476,60 +15462,60 @@ z - + - + - + - + @@ -15537,7 +15523,7 @@ C 523.137815 6750.52873 524.234517 6754.967114 526.332908 6758.953984 - + @@ -15546,14 +15532,14 @@ C 523.137815 6750.52873 524.234517 6754.967114 526.332908 6758.953984 - + - + @@ -15572,7 +15558,7 @@ C 523.137815 6750.52873 524.234517 6754.967114 526.332908 6758.953984 - + @@ -15585,34 +15571,34 @@ C 523.137815 6750.52873 524.234517 6754.967114 526.332908 6758.953984 - +" clip-path="url(#p788734ee9c)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#p788734ee9c)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -15620,14 +15606,14 @@ z - + - + @@ -15646,7 +15632,7 @@ z - + @@ -15659,56 +15645,56 @@ z - + - + - + - + @@ -15716,7 +15702,7 @@ C 119.487444 6939.222535 122.212324 6941.71154 125.451223 6943.329666 - + @@ -15724,14 +15710,14 @@ C 119.487444 6939.222535 122.212324 6941.71154 125.451223 6943.329666 - + - + @@ -15750,7 +15736,7 @@ C 119.487444 6939.222535 122.212324 6941.71154 125.451223 6943.329666 - + @@ -15760,60 +15746,60 @@ C 119.487444 6939.222535 122.212324 6941.71154 125.451223 6943.329666 - + - + - + - + @@ -15821,7 +15807,7 @@ C 302.479426 6929.846522 303.215691 6933.76588 304.650494 6937.450058 - + @@ -15830,7 +15816,7 @@ C 302.479426 6929.846522 303.215691 6933.76588 304.650494 6937.450058 - + @@ -15838,7 +15824,7 @@ C 302.479426 6929.846522 303.215691 6933.76588 304.650494 6937.450058 - + @@ -15857,7 +15843,7 @@ C 302.479426 6929.846522 303.215691 6933.76588 304.650494 6937.450058 - + @@ -15870,60 +15856,60 @@ C 302.479426 6929.846522 303.215691 6933.76588 304.650494 6937.450058 - + - + - + - + @@ -15931,7 +15917,7 @@ C 539.045261 6929.000948 539.774026 6932.066218 541.172869 6934.841781 - + @@ -15939,14 +15925,14 @@ C 539.045261 6929.000948 539.774026 6932.066218 541.172869 6934.841781 - + - + @@ -15965,7 +15951,7 @@ C 539.045261 6929.000948 539.774026 6932.066218 541.172869 6934.841781 - + @@ -15974,60 +15960,60 @@ C 539.045261 6929.000948 539.774026 6932.066218 541.172869 6934.841781 - + - + - + - + @@ -16035,7 +16021,7 @@ C 729.714059 6927.726422 729.878713 6929.556334 730.206037 6931.360492 - + @@ -16044,14 +16030,14 @@ C 729.714059 6927.726422 729.878713 6929.556334 730.206037 6931.360492 - + - + @@ -16070,7 +16056,7 @@ C 729.714059 6927.726422 729.878713 6929.556334 730.206037 6931.360492 - + @@ -16082,56 +16068,56 @@ C 729.714059 6927.726422 729.878713 6929.556334 730.206037 6931.360492 - + - + - + - + @@ -16139,21 +16125,21 @@ C 131.048767 7116.94683 133.870726 7118.620787 136.998326 7119.223143 - + - + - + @@ -16168,7 +16154,7 @@ C 131.048767 7116.94683 133.870726 7118.620787 136.998326 7119.223143 - + @@ -16181,56 +16167,56 @@ C 131.048767 7116.94683 133.870726 7118.620787 136.998326 7119.223143 - + - + - + - + @@ -16238,21 +16224,21 @@ C 344.306436 7118.145949 347.816607 7119.619841 351.481242 7119.643475 - + - + - + @@ -16267,7 +16253,7 @@ C 344.306436 7118.145949 347.816607 7119.619841 351.481242 7119.643475 - + @@ -16277,56 +16263,56 @@ C 344.306436 7118.145949 347.816607 7119.619841 351.481242 7119.643475 - + - + - + - + @@ -16334,21 +16320,21 @@ C 552.350976 7119.018206 555.779088 7120.926115 559.536741 7121.507655 - + - + - + @@ -16363,7 +16349,7 @@ C 552.350976 7119.018206 555.779088 7120.926115 559.536741 7121.507655 - + @@ -16376,56 +16362,56 @@ C 552.350976 7119.018206 555.779088 7120.926115 559.536741 7121.507655 - + - + - + - + @@ -16433,21 +16419,21 @@ C 767.410671 7115.034726 769.36572 7116.725765 771.670811 7117.775187 - + - + - + @@ -16462,7 +16448,7 @@ C 767.410671 7115.034726 769.36572 7116.725765 771.670811 7117.775187 - + @@ -16479,56 +16465,56 @@ C 767.410671 7115.034726 769.36572 7116.725765 771.670811 7117.775187 - + - + - + - + @@ -16536,7 +16522,7 @@ C 123.56834 7302.957941 128.469129 7305.031262 133.592117 7305.082672 - + @@ -16544,7 +16530,7 @@ C 123.56834 7302.957941 128.469129 7305.031262 133.592117 7305.082672 - + @@ -16552,7 +16538,7 @@ C 123.56834 7302.957941 128.469129 7305.031262 133.592117 7305.082672 - + @@ -16567,7 +16553,7 @@ C 123.56834 7302.957941 128.469129 7305.031262 133.592117 7305.082672 - + @@ -16580,60 +16566,60 @@ C 123.56834 7302.957941 128.469129 7305.031262 133.592117 7305.082672 - + - + - + - + @@ -16641,20 +16627,20 @@ C 358.070248 7291.75041 358.95374 7291.816137 359.821104 7291.694319 - + - + - + @@ -16669,7 +16655,7 @@ C 358.070248 7291.75041 358.95374 7291.816137 359.821104 7291.694319 - + @@ -16682,56 +16668,56 @@ C 358.070248 7291.75041 358.95374 7291.816137 359.821104 7291.694319 - + - + - + - + @@ -16739,7 +16725,7 @@ C 530.010798 7299.130903 532.049998 7302.053795 534.610231 7304.480294 - + @@ -16747,7 +16733,7 @@ C 530.010798 7299.130903 532.049998 7302.053795 534.610231 7304.480294 - + @@ -16755,7 +16741,7 @@ C 530.010798 7299.130903 532.049998 7302.053795 534.610231 7304.480294 - + @@ -16770,7 +16756,7 @@ C 530.010798 7299.130903 532.049998 7302.053795 534.610231 7304.480294 - + @@ -16787,56 +16773,56 @@ C 530.010798 7299.130903 532.049998 7302.053795 534.610231 7304.480294 - + - + - + - + @@ -16844,7 +16830,7 @@ C 765.035735 7293.503419 766.340716 7295.151565 767.957943 7296.4536 - + @@ -16852,14 +16838,14 @@ C 765.035735 7293.503419 766.340716 7295.151565 767.957943 7296.4536 - + - + @@ -16874,7 +16860,7 @@ C 765.035735 7293.503419 766.340716 7295.151565 767.957943 7296.4536 - + @@ -16890,60 +16876,60 @@ C 765.035735 7293.503419 766.340716 7295.151565 767.957943 7296.4536 - + - + - + - + @@ -16951,20 +16937,20 @@ C 140.677687 7467.011578 141.224021 7468.472164 142.215266 7469.611788 - + - + - + @@ -16979,7 +16965,7 @@ C 140.677687 7467.011578 141.224021 7468.472164 142.215266 7469.611788 - + @@ -16994,56 +16980,56 @@ C 140.677687 7467.011578 141.224021 7468.472164 142.215266 7469.611788 - + - + - + - + @@ -17051,7 +17037,7 @@ C 308.204472 7472.170172 310.507759 7478.638789 314.722641 7483.806987 - + @@ -17060,7 +17046,7 @@ C 308.204472 7472.170172 310.507759 7478.638789 314.722641 7483.806987 - + @@ -17068,7 +17054,7 @@ C 308.204472 7472.170172 310.507759 7478.638789 314.722641 7483.806987 - + @@ -17083,7 +17069,7 @@ C 308.204472 7472.170172 310.507759 7478.638789 314.722641 7483.806987 - + @@ -17096,34 +17082,34 @@ C 308.204472 7472.170172 310.507759 7478.638789 314.722641 7483.806987 - +" clip-path="url(#pd820ca8c83)" style="fill: #cab2d6; opacity: 0.4"/> - +" clip-path="url(#pd820ca8c83)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -17131,14 +17117,14 @@ z - + - + @@ -17153,7 +17139,7 @@ z - + @@ -17166,56 +17152,56 @@ z - + - + - + - + @@ -17223,7 +17209,7 @@ C 758.146369 7479.10226 761.114336 7481.511746 764.579741 7482.918501 - + @@ -17231,7 +17217,7 @@ C 758.146369 7479.10226 761.114336 7481.511746 764.579741 7482.918501 - + @@ -17239,7 +17225,7 @@ C 758.146369 7479.10226 761.114336 7481.511746 764.579741 7482.918501 - + @@ -17254,7 +17240,7 @@ C 758.146369 7479.10226 761.114336 7481.511746 764.579741 7482.918501 - + @@ -17264,56 +17250,56 @@ C 758.146369 7479.10226 761.114336 7481.511746 764.579741 7482.918501 - + - + - + - + @@ -17321,7 +17307,7 @@ C 91.05228 7649.642439 91.923436 7653.869718 93.612374 7657.79347 - + @@ -17330,7 +17316,7 @@ C 91.05228 7649.642439 91.923436 7653.869718 93.612374 7657.79347 - + @@ -17338,7 +17324,7 @@ C 91.05228 7649.642439 91.923436 7653.869718 93.612374 7657.79347 - + @@ -17353,7 +17339,7 @@ C 91.05228 7649.642439 91.923436 7653.869718 93.612374 7657.79347 - + @@ -17366,60 +17352,60 @@ C 91.05228 7649.642439 91.923436 7653.869718 93.612374 7657.79347 - + - + - + - + @@ -17427,7 +17413,7 @@ C 327.854901 7648.887136 328.816018 7652.337659 330.633964 7655.347788 - + @@ -17435,14 +17421,14 @@ C 327.854901 7648.887136 328.816018 7652.337659 330.633964 7655.347788 - + - + @@ -17457,7 +17443,7 @@ C 327.854901 7648.887136 328.816018 7652.337659 330.633964 7655.347788 - + @@ -17466,60 +17452,60 @@ C 327.854901 7648.887136 328.816018 7652.337659 330.633964 7655.347788 - + - + - + - + @@ -17527,7 +17513,7 @@ C 518.348584 7647.586573 518.59269 7649.795787 519.076483 7651.958273 - + @@ -17536,14 +17522,14 @@ C 518.348584 7647.586573 518.59269 7649.795787 519.076483 7651.958273 - + - + @@ -17558,7 +17544,7 @@ C 518.348584 7647.586573 518.59269 7649.795787 519.076483 7651.958273 - + @@ -17570,60 +17556,60 @@ C 518.348584 7647.586573 518.59269 7649.795787 519.076483 7651.958273 - + - + - + - + @@ -17631,7 +17617,7 @@ C 742.955794 7649.761686 744.158855 7654.069946 746.433821 7657.825727 - + @@ -17639,13 +17625,13 @@ C 742.955794 7649.761686 744.158855 7654.069946 746.433821 7657.825727 - + - + @@ -17657,7 +17643,7 @@ C 742.955794 7649.761686 744.158855 7654.069946 746.433821 7657.825727 - + @@ -17667,60 +17653,60 @@ C 742.955794 7649.761686 744.158855 7654.069946 746.433821 7657.825727 - + - + - + - + @@ -17728,7 +17714,7 @@ C 101.088586 7829.964295 102.351606 7834.603706 104.746336 7838.67598 - + @@ -17736,14 +17722,14 @@ C 101.088586 7829.964295 102.351606 7834.603706 104.746336 7838.67598 - + - + @@ -17755,7 +17741,7 @@ C 101.088586 7829.964295 102.351606 7834.603706 104.746336 7838.67598 - + @@ -17768,60 +17754,60 @@ C 101.088586 7829.964295 102.351606 7834.603706 104.746336 7838.67598 - + - + - + - + @@ -17829,7 +17815,7 @@ C 318.42907 7829.382976 319.500635 7833.456283 321.539288 7837.062864 - + @@ -17837,13 +17823,13 @@ C 318.42907 7829.382976 319.500635 7833.456283 321.539288 7837.062864 - + - + @@ -17855,7 +17841,7 @@ C 318.42907 7829.382976 319.500635 7833.456283 321.539288 7837.062864 - + @@ -17872,60 +17858,60 @@ C 318.42907 7829.382976 319.500635 7833.456283 321.539288 7837.062864 - + - + - + - + @@ -17933,7 +17919,7 @@ C 520.982931 7829.86184 522.094964 7834.416459 524.224846 7838.518192 - + @@ -17941,14 +17927,14 @@ C 520.982931 7829.86184 522.094964 7834.416459 524.224846 7838.518192 - + - + @@ -17960,7 +17946,7 @@ C 520.982931 7829.86184 522.094964 7834.416459 524.224846 7838.518192 - + @@ -17973,60 +17959,60 @@ C 520.982931 7829.86184 522.094964 7834.416459 524.224846 7838.518192 - + - + - + - + @@ -18034,20 +18020,20 @@ C 763.700975 7828.494983 764.879508 7831.64231 767.01737 7834.096674 - + - + - + @@ -18059,7 +18045,7 @@ C 763.700975 7828.494983 764.879508 7831.64231 767.01737 7834.096674 - + @@ -18072,56 +18058,56 @@ C 763.700975 7828.494983 764.879508 7831.64231 767.01737 7834.096674 - + - + - + - + @@ -18129,7 +18115,7 @@ C 83.310501 8008.919139 83.930121 8012.703501 85.145056 8016.314176 - + @@ -18137,14 +18123,14 @@ C 83.310501 8008.919139 83.930121 8012.703501 85.145056 8016.314176 - + - + @@ -18156,7 +18142,7 @@ C 83.310501 8008.919139 83.930121 8012.703501 85.145056 8016.314176 - + @@ -18173,60 +18159,60 @@ C 83.310501 8008.919139 83.930121 8012.703501 85.145056 8016.314176 - + - + - + - + @@ -18234,7 +18220,7 @@ C 317.11818 8008.309971 317.739592 8011.480166 318.947846 8014.443758 - + @@ -18242,13 +18228,13 @@ C 317.11818 8008.309971 317.739592 8011.480166 318.947846 8014.443758 - + - + @@ -18260,7 +18246,7 @@ C 317.11818 8008.309971 317.739592 8011.480166 318.947846 8014.443758 - + @@ -18276,60 +18262,60 @@ C 317.11818 8008.309971 317.739592 8011.480166 318.947846 8014.443758 - + - + - + - + @@ -18337,20 +18323,20 @@ C 550.337922 8007.569727 550.981756 8009.987608 552.205206 8012.122014 - + - + - + @@ -18362,7 +18348,7 @@ C 550.337922 8007.569727 550.981756 8009.987608 552.205206 8012.122014 - + @@ -18377,63 +18363,63 @@ C 550.337922 8007.569727 550.981756 8009.987608 552.205206 8012.122014 - + - + - + - + - + @@ -18442,14 +18428,14 @@ C 716.349376 8008.42959 716.796804 8011.734547 717.679566 8014.935087 - + - + @@ -18461,7 +18447,7 @@ C 716.349376 8008.42959 716.796804 8011.734547 717.679566 8014.935087 - + @@ -18474,34 +18460,34 @@ C 716.349376 8008.42959 716.796804 8011.734547 717.679566 8014.935087 - +" clip-path="url(#pc325788224)" style="fill: #6a3d9a; opacity: 0.4"/> - +" clip-path="url(#pc325788224)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -18509,14 +18495,14 @@ z - + - + @@ -18528,7 +18514,7 @@ z - + @@ -18541,60 +18527,60 @@ z - + - + - + - + @@ -18602,7 +18588,7 @@ C 307.628578 8189.450778 308.650997 8193.863927 310.617456 8197.880129 - + @@ -18610,14 +18596,14 @@ C 307.628578 8189.450778 308.650997 8193.863927 310.617456 8197.880129 - + - + @@ -18629,7 +18615,7 @@ C 307.628578 8189.450778 308.650997 8193.863927 310.617456 8197.880129 - + @@ -18639,60 +18625,60 @@ C 307.628578 8189.450778 308.650997 8193.863927 310.617456 8197.880129 - + - + - + - + @@ -18700,7 +18686,7 @@ C 502.516057 8186.667232 502.629456 8188.353564 502.855488 8190.026601 - + @@ -18709,14 +18695,14 @@ C 502.516057 8186.667232 502.629456 8188.353564 502.855488 8190.026601 - + - + @@ -18728,7 +18714,7 @@ C 502.516057 8186.667232 502.629456 8188.353564 502.855488 8190.026601 - + @@ -18741,60 +18727,60 @@ C 502.516057 8186.667232 502.629456 8188.353564 502.855488 8190.026601 - + - + - + - + @@ -18802,7 +18788,7 @@ C 729.191058 8188.343348 729.741592 8191.68514 730.820804 8194.8717 - + @@ -18810,14 +18796,14 @@ C 729.191058 8188.343348 729.741592 8191.68514 730.820804 8194.8717 - + - + @@ -18829,7 +18815,7 @@ C 729.191058 8188.343348 729.741592 8191.68514 730.820804 8194.8717 - + @@ -18838,60 +18824,60 @@ C 729.191058 8188.343348 729.741592 8191.68514 730.820804 8194.8717 - + - + - + - + @@ -18899,7 +18885,7 @@ C 77.958104 8366.259461 78.037335 8367.669359 78.195423 8369.071485 - + @@ -18908,13 +18894,13 @@ C 77.958104 8366.259461 78.037335 8367.669359 78.195423 8369.071485 - + - + @@ -18926,7 +18912,7 @@ C 77.958104 8366.259461 78.037335 8367.669359 78.195423 8369.071485 - + @@ -18938,56 +18924,56 @@ C 77.958104 8366.259461 78.037335 8367.669359 78.195423 8369.071485 - + - + - + - + @@ -18995,7 +18981,7 @@ C 309.626235 8371.313235 311.843422 8377.586497 315.905728 8382.615522 - + @@ -19003,14 +18989,14 @@ C 309.626235 8371.313235 311.843422 8377.586497 315.905728 8382.615522 - + - + @@ -19019,7 +19005,7 @@ C 309.626235 8371.313235 311.843422 8377.586497 315.905728 8382.615522 - + @@ -19032,60 +19018,60 @@ C 309.626235 8371.313235 311.843422 8377.586497 315.905728 8382.615522 - + - + - + - + @@ -19093,7 +19079,7 @@ C 529.675316 8369.451356 530.971231 8373.962592 533.414139 8377.863739 - + @@ -19101,13 +19087,13 @@ C 529.675316 8369.451356 530.971231 8373.962592 533.414139 8377.863739 - + - + @@ -19116,7 +19102,7 @@ C 529.675316 8369.451356 530.971231 8373.962592 533.414139 8377.863739 - + @@ -19133,60 +19119,60 @@ C 529.675316 8369.451356 530.971231 8373.962592 533.414139 8377.863739 - + - + - + - + @@ -19194,7 +19180,7 @@ C 736.533308 8367.076896 736.806079 8369.296987 737.34553 8371.459153 - + @@ -19202,13 +19188,13 @@ C 736.533308 8367.076896 736.806079 8369.296987 737.34553 8371.459153 - + - + @@ -19217,7 +19203,7 @@ C 736.533308 8367.076896 736.806079 8369.296987 737.34553 8371.459153 - + @@ -19230,34 +19216,34 @@ C 736.533308 8367.076896 736.806079 8369.296987 737.34553 8371.459153 - +" clip-path="url(#p991b8b4613)" style="fill: #ffff99; opacity: 0.4"/> - +" clip-path="url(#p991b8b4613)" style="fill: #b2df8a; opacity: 0.4"/> - + @@ -19265,14 +19251,14 @@ z - + - + @@ -19281,7 +19267,7 @@ z - + @@ -19294,60 +19280,60 @@ z - + - + - + - + @@ -19355,7 +19341,7 @@ C 299.104412 8546.958184 299.329104 8549.192825 299.775113 8551.388258 - + @@ -19363,13 +19349,13 @@ C 299.104412 8546.958184 299.329104 8549.192825 299.775113 8551.388258 - + - + @@ -19378,7 +19364,7 @@ C 299.104412 8546.958184 299.329104 8549.192825 299.775113 8551.388258 - + @@ -19395,60 +19381,60 @@ C 299.104412 8546.958184 299.329104 8549.192825 299.775113 8551.388258 - + - + - + - + @@ -19456,7 +19442,7 @@ C 529.803749 8547.222905 530.187037 8549.713222 530.940288 8552.102288 - + @@ -19464,13 +19450,13 @@ C 529.803749 8547.222905 530.187037 8549.713222 530.940288 8552.102288 - + - + @@ -19479,7 +19465,7 @@ C 529.803749 8547.222905 530.187037 8549.713222 530.940288 8552.102288 - + @@ -19495,34 +19481,34 @@ C 529.803749 8547.222905 530.187037 8549.713222 530.940288 8552.102288 - +" clip-path="url(#p88ff87a07a)" style="fill: #ffff99; opacity: 0.4"/> - +" clip-path="url(#p88ff87a07a)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -19530,14 +19516,14 @@ z - + - + @@ -19546,7 +19532,7 @@ z - + @@ -19561,60 +19547,60 @@ z - + - + - + - + @@ -19622,7 +19608,7 @@ C 82.98468 8726.566261 83.150972 8728.541667 83.481801 8730.492718 - + @@ -19631,13 +19617,13 @@ C 82.98468 8726.566261 83.150972 8728.541667 83.481801 8730.492718 - + - + @@ -19646,7 +19632,7 @@ C 82.98468 8726.566261 83.150972 8728.541667 83.481801 8730.492718 - + @@ -19659,34 +19645,34 @@ C 82.98468 8726.566261 83.150972 8728.541667 83.481801 8730.492718 - +" clip-path="url(#p595f9370f5)" style="fill: #ffff99; opacity: 0.4"/> - +" clip-path="url(#p595f9370f5)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -19694,14 +19680,14 @@ z - + - + @@ -19710,7 +19696,7 @@ z - + @@ -19723,63 +19709,63 @@ z - + - + - + - + - + @@ -19787,14 +19773,14 @@ C 515.992849 8730.555663 517.706007 8736.400389 520.927955 8741.424301 - + - + @@ -19803,7 +19789,7 @@ C 515.992849 8730.555663 517.706007 8736.400389 520.927955 8741.424301 - + @@ -19813,63 +19799,63 @@ C 515.992849 8730.555663 517.706007 8736.400389 520.927955 8741.424301 - + - + - + - + - + @@ -19878,14 +19864,14 @@ C 712.078069 8726.988155 712.299942 8729.38382 712.740856 8731.74378 - + - + @@ -19894,7 +19880,7 @@ C 712.078069 8726.988155 712.299942 8729.38382 712.740856 8731.74378 - + @@ -19907,60 +19893,60 @@ C 712.078069 8726.988155 712.299942 8729.38382 712.740856 8731.74378 - + - + - + - + @@ -19968,7 +19954,7 @@ C 92.665381 8907.425681 93.096261 8910.378893 93.944533 8913.223995 - + @@ -19976,13 +19962,13 @@ C 92.665381 8907.425681 93.096261 8910.378893 93.944533 8913.223995 - + - + @@ -19991,7 +19977,7 @@ C 92.665381 8907.425681 93.096261 8910.378893 93.944533 8913.223995 - + @@ -20000,60 +19986,60 @@ C 92.665381 8907.425681 93.096261 8910.378893 93.944533 8913.223995 - + - + - + - + @@ -20061,7 +20047,7 @@ C 290.787696 8905.392502 290.822767 8906.327861 290.892837 8907.260922 - + @@ -20070,13 +20056,13 @@ C 290.787696 8905.392502 290.822767 8906.327861 290.892837 8907.260922 - + - + @@ -20085,7 +20071,7 @@ C 290.787696 8905.392502 290.822767 8906.327861 290.892837 8907.260922 - + @@ -20097,60 +20083,60 @@ C 290.787696 8905.392502 290.822767 8906.327861 290.892837 8907.260922 - + - + - + - + @@ -20158,7 +20144,7 @@ C 534.974913 8908.354475 536.015325 8912.182394 537.98831 8915.543806 - + @@ -20166,13 +20152,13 @@ C 534.974913 8908.354475 536.015325 8912.182394 537.98831 8915.543806 - + - + @@ -20184,7 +20170,7 @@ C 534.974913 8908.354475 536.015325 8912.182394 537.98831 8915.543806 - + @@ -20201,60 +20187,60 @@ C 534.974913 8908.354475 536.015325 8912.182394 537.98831 8915.543806 - + - + - + - + @@ -20262,7 +20248,7 @@ C 740.701648 8906.595691 740.973303 8908.725934 741.510087 8910.796358 - + @@ -20270,13 +20256,13 @@ C 740.701648 8906.595691 740.973303 8908.725934 741.510087 8910.796358 - + - + @@ -20288,7 +20274,7 @@ C 740.701648 8906.595691 740.973303 8908.725934 741.510087 8910.796358 - + @@ -20301,56 +20287,56 @@ C 740.701648 8906.595691 740.973303 8908.725934 741.510087 8910.796358 - + - + - + - + @@ -20358,20 +20344,20 @@ C 131.467992 9091.585999 132.743068 9093.06807 134.308197 9094.193748 - + - + - + @@ -20383,7 +20369,7 @@ C 131.467992 9091.585999 132.743068 9093.06807 134.308197 9094.193748 - + @@ -20396,60 +20382,60 @@ C 131.467992 9091.585999 132.743068 9093.06807 134.308197 9094.193748 - + - + - + - + @@ -20457,7 +20443,7 @@ C 302.603918 9086.564009 302.839866 9088.795525 303.307845 9090.983783 - + @@ -20465,13 +20451,13 @@ C 302.603918 9086.564009 302.839866 9088.795525 303.307845 9090.983783 - + - + @@ -20483,7 +20469,7 @@ C 302.603918 9086.564009 302.839866 9088.795525 303.307845 9090.983783 - + @@ -20500,60 +20486,60 @@ C 302.603918 9086.564009 302.839866 9088.795525 303.307845 9090.983783 - + - + - + - + @@ -20561,7 +20547,7 @@ C 534.100926 9086.689423 534.474584 9089.037782 535.208039 9091.284232 - + @@ -20569,13 +20555,13 @@ C 534.100926 9086.689423 534.474584 9089.037782 535.208039 9091.284232 - + - + @@ -20587,7 +20573,7 @@ C 534.100926 9086.689423 534.474584 9089.037782 535.208039 9091.284232 - + @@ -20603,34 +20589,34 @@ C 534.100926 9086.689423 534.474584 9089.037782 535.208039 9091.284232 - +" clip-path="url(#p41ad024bda)" style="fill: #b15928; opacity: 0.4"/> - +" clip-path="url(#p41ad024bda)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -20638,14 +20624,14 @@ z - + - + @@ -20657,7 +20643,7 @@ z - + @@ -20672,60 +20658,60 @@ z - + - + - + - + @@ -20733,7 +20719,7 @@ C 86.223493 9266.097272 86.384 9267.995432 86.703305 9269.869979 - + @@ -20742,13 +20728,13 @@ C 86.223493 9266.097272 86.384 9267.995432 86.703305 9269.869979 - + - + @@ -20760,7 +20746,7 @@ C 86.223493 9266.097272 86.384 9267.995432 86.703305 9269.869979 - + @@ -20773,34 +20759,34 @@ C 86.223493 9266.097272 86.384 9267.995432 86.703305 9269.869979 - +" clip-path="url(#pc4ae7bf09b)" style="fill: #b15928; opacity: 0.4"/> - +" clip-path="url(#pc4ae7bf09b)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -20808,14 +20794,14 @@ z - + - + @@ -20827,7 +20813,7 @@ z - + @@ -20840,56 +20826,56 @@ z - + - + - + - + @@ -20897,7 +20883,7 @@ C 521.095897 9270.165512 522.95851 9275.989118 526.422856 9280.850874 - + @@ -20905,14 +20891,14 @@ C 521.095897 9270.165512 522.95851 9275.989118 526.422856 9280.850874 - + - + @@ -20924,7 +20910,7 @@ C 521.095897 9270.165512 522.95851 9275.989118 526.422856 9280.850874 - + @@ -20934,56 +20920,56 @@ C 521.095897 9270.165512 522.95851 9275.989118 526.422856 9280.850874 - + - + - + - + @@ -20991,7 +20977,7 @@ C 713.890465 9266.963963 714.192039 9269.723983 714.789847 9272.426903 - + @@ -21000,14 +20986,14 @@ C 713.890465 9266.963963 714.192039 9269.723983 714.789847 9272.426903 - + - + @@ -21019,7 +21005,7 @@ C 713.890465 9266.963963 714.192039 9269.723983 714.789847 9272.426903 - + @@ -21032,60 +21018,60 @@ C 713.890465 9266.963963 714.192039 9269.723983 714.789847 9272.426903 - + - + - + - + @@ -21093,7 +21079,7 @@ C 96.986868 9446.81728 97.38415 9449.555024 98.166407 9452.19361 - + @@ -21101,13 +21087,13 @@ C 96.986868 9446.81728 97.38415 9449.555024 98.166407 9452.19361 - + - + @@ -21119,7 +21105,7 @@ C 96.986868 9446.81728 97.38415 9449.555024 98.166407 9452.19361 - + @@ -21128,60 +21114,60 @@ C 96.986868 9446.81728 97.38415 9449.555024 98.166407 9452.19361 - + - + - + - + @@ -21189,7 +21175,7 @@ C 292.873654 9445.161959 292.923136 9446.258181 293.021947 9447.3505 - + @@ -21198,13 +21184,13 @@ C 292.873654 9445.161959 292.923136 9446.258181 293.021947 9447.3505 - + - + @@ -21216,7 +21202,7 @@ C 292.873654 9445.161959 292.923136 9446.258181 293.021947 9447.3505 - + @@ -21228,60 +21214,60 @@ C 292.873654 9445.161959 292.923136 9446.258181 293.021947 9447.3505 - + - + - + - + @@ -21289,7 +21275,7 @@ C 522.366296 9447.873808 523.138703 9451.643175 524.636705 9455.144838 - + @@ -21297,13 +21283,13 @@ C 522.366296 9447.873808 523.138703 9451.643175 524.636705 9455.144838 - + - + @@ -21319,7 +21305,7 @@ C 522.366296 9447.873808 523.138703 9451.643175 524.636705 9455.144838 - + @@ -21332,56 +21318,56 @@ C 522.366296 9447.873808 523.138703 9451.643175 524.636705 9455.144838 - + - + - + - + @@ -21389,20 +21375,20 @@ C 765.171371 9452.258442 766.588316 9453.943106 768.332264 9455.237225 - + - + - + @@ -21418,7 +21404,7 @@ C 765.171371 9452.258442 766.588316 9453.943106 768.332264 9455.237225 - + @@ -21431,60 +21417,60 @@ C 765.171371 9452.258442 766.588316 9453.943106 768.332264 9455.237225 - + - + - + - + @@ -21492,7 +21478,7 @@ C 85.55487 9626.919516 85.946933 9629.89151 86.720988 9632.77428 - + @@ -21500,14 +21486,14 @@ C 85.55487 9626.919516 85.946933 9629.89151 86.720988 9632.77428 - + - + @@ -21523,7 +21509,7 @@ C 85.55487 9626.919516 85.946933 9629.89151 86.720988 9632.77428 - + @@ -21540,60 +21526,60 @@ C 85.55487 9626.919516 85.946933 9629.89151 86.720988 9632.77428 - + - + - + - + @@ -21601,7 +21587,7 @@ C 317.390696 9626.82024 317.898367 9629.683474 318.890453 9632.393177 - + @@ -21609,13 +21595,13 @@ C 317.390696 9626.82024 317.898367 9629.683474 318.890453 9632.393177 - + - + @@ -21631,7 +21617,7 @@ C 317.390696 9626.82024 317.898367 9629.683474 318.890453 9632.393177 - + @@ -21647,34 +21633,34 @@ C 317.390696 9626.82024 317.898367 9629.683474 318.890453 9632.393177 - +" clip-path="url(#p9a8e4c22f5)" style="fill: #a6cee3; opacity: 0.4"/> - +" clip-path="url(#p9a8e4c22f5)" style="fill: #e31a1c; opacity: 0.4"/> - + @@ -21682,14 +21668,14 @@ z - + - + @@ -21705,7 +21691,7 @@ z - + @@ -21720,56 +21706,56 @@ z - + - + - + - + @@ -21777,7 +21763,7 @@ C 718.686511 9626.53293 718.968863 9629.123551 719.52859 9631.660843 - + @@ -21786,14 +21772,14 @@ C 718.686511 9626.53293 718.968863 9629.123551 719.52859 9631.660843 - + - + @@ -21809,7 +21795,7 @@ C 718.686511 9626.53293 718.968863 9629.123551 719.52859 9631.660843 - + @@ -21822,34 +21808,34 @@ C 718.686511 9626.53293 718.968863 9629.123551 719.52859 9631.660843 - +" clip-path="url(#p7e4984965f)" style="fill: #a6cee3; opacity: 0.4"/> - +" clip-path="url(#p7e4984965f)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -21857,14 +21843,14 @@ z - + - + @@ -21880,7 +21866,7 @@ z - + @@ -21893,60 +21879,60 @@ z - + - + - + - + @@ -21954,7 +21940,7 @@ C 307.525801 9808.278451 308.547661 9812.694279 310.513216 9816.713796 - + @@ -21962,14 +21948,14 @@ C 307.525801 9808.278451 308.547661 9812.694279 310.513216 9816.713796 - + - + @@ -21985,7 +21971,7 @@ C 307.525801 9808.278451 308.547661 9812.694279 310.513216 9816.713796 - + @@ -21995,56 +21981,56 @@ C 307.525801 9808.278451 308.547661 9812.694279 310.513216 9816.713796 - + - + - + - + @@ -22052,7 +22038,7 @@ C 501.42588 9805.862516 501.592234 9807.917581 501.923315 9809.949209 - + @@ -22061,14 +22047,14 @@ C 501.42588 9805.862516 501.592234 9807.917581 501.923315 9809.949209 - + - + @@ -22084,7 +22070,7 @@ C 501.42588 9805.862516 501.592234 9807.917581 501.923315 9809.949209 - + @@ -22097,60 +22083,60 @@ C 501.42588 9805.862516 501.592234 9807.917581 501.923315 9809.949209 - + - + - + - + @@ -22158,7 +22144,7 @@ C 729.804179 9806.769971 730.235999 9809.720115 731.086033 9812.561576 - + @@ -22166,13 +22152,13 @@ C 729.804179 9806.769971 730.235999 9809.720115 731.086033 9812.561576 - + - + @@ -22188,7 +22174,7 @@ C 729.804179 9806.769971 730.235999 9809.720115 731.086033 9812.561576 - + @@ -22197,60 +22183,60 @@ C 729.804179 9806.769971 730.235999 9809.720115 731.086033 9812.561576 - + - + - + - + @@ -22258,7 +22244,7 @@ C 78.171221 9984.938423 78.235057 9986.202498 78.362486 9987.460942 - + @@ -22267,13 +22253,13 @@ C 78.171221 9984.938423 78.235057 9986.202498 78.362486 9987.460942 - + - + @@ -22289,7 +22275,7 @@ C 78.171221 9984.938423 78.235057 9986.202498 78.362486 9987.460942 - + @@ -22301,60 +22287,60 @@ C 78.171221 9984.938423 78.235057 9986.202498 78.362486 9987.460942 - + - + - + - + @@ -22362,20 +22348,20 @@ C 345.866066 9985.609802 346.42717 9987.505195 347.481203 9989.129422 - + - + - + @@ -22387,7 +22373,7 @@ C 345.866066 9985.609802 346.42717 9987.505195 347.481203 9989.129422 - + @@ -22400,67 +22386,67 @@ C 345.866066 9985.609802 346.42717 9987.505195 347.481203 9989.129422 - + - + - + - + - + @@ -22468,7 +22454,7 @@ C 503.753375 9990.761573 505.788512 9997.702758 509.615876 10003.668615 - + @@ -22476,7 +22462,7 @@ C 503.753375 9990.761573 505.788512 9997.702758 509.615876 10003.668615 - + @@ -22488,7 +22474,7 @@ C 503.753375 9990.761573 505.788512 9997.702758 509.615876 10003.668615 - + @@ -22505,56 +22491,56 @@ C 503.753375 9990.761573 505.788512 9997.702758 509.615876 10003.668615 - + - + - + - + @@ -22562,7 +22548,7 @@ C 749.438085 9995.403564 751.238724 9997.930087 753.494787 10000.011702 - + @@ -22570,14 +22556,14 @@ C 749.438085 9995.403564 751.238724 9997.930087 753.494787 10000.011702 - + - + @@ -22589,7 +22575,7 @@ C 749.438085 9995.403564 751.238724 9997.930087 753.494787 10000.011702 - + @@ -22605,60 +22591,60 @@ C 749.438085 9995.403564 751.238724 9997.930087 753.494787 10000.011702 - + - + - + - + @@ -22666,20 +22652,20 @@ C 131.923041 10166.059079 132.797823 10168.498543 134.396731 10170.441262 - + - + - + @@ -22691,7 +22677,7 @@ C 131.923041 10166.059079 132.797823 10168.498543 134.396731 10170.441262 - + @@ -22706,67 +22692,67 @@ C 131.923041 10166.059079 132.797823 10168.498543 134.396731 10170.441262 - + - + - + - + - + @@ -22775,7 +22761,7 @@ C 283.414676 10168.637877 284.367911 10173.688071 286.225082 10178.432405 - + @@ -22783,7 +22769,7 @@ C 283.414676 10168.637877 284.367911 10173.688071 286.225082 10178.432405 - + @@ -22795,7 +22781,7 @@ C 283.414676 10168.637877 284.367911 10173.688071 286.225082 10178.432405 - + @@ -22808,34 +22794,34 @@ C 283.414676 10168.637877 284.367911 10173.688071 286.225082 10178.432405 - +" clip-path="url(#p199c751ae9)" style="fill: #1f78b4; opacity: 0.4"/> - +" clip-path="url(#p199c751ae9)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -22843,14 +22829,14 @@ z - + - + @@ -22862,7 +22848,7 @@ z - + @@ -22875,60 +22861,60 @@ z - + - + - + - + @@ -22936,7 +22922,7 @@ C 743.13997 10166.462617 743.672277 10169.357923 744.710728 10172.086621 - + @@ -22944,13 +22930,13 @@ C 743.13997 10166.462617 743.672277 10169.357923 744.710728 10172.086621 - + - + @@ -22962,7 +22948,7 @@ C 743.13997 10166.462617 743.672277 10169.357923 744.710728 10172.086621 - + @@ -22972,60 +22958,60 @@ C 743.13997 10166.462617 743.672277 10169.357923 744.710728 10172.086621 - + - + - + - + @@ -23033,7 +23019,7 @@ C 83.926102 10344.566342 83.983343 10345.719522 84.097614 10346.86774 - + @@ -23042,13 +23028,13 @@ C 83.926102 10344.566342 83.983343 10345.719522 84.097614 10346.86774 - + - + @@ -23060,7 +23046,7 @@ C 83.926102 10344.566342 83.983343 10345.719522 84.097614 10346.86774 - + @@ -23073,60 +23059,60 @@ C 83.926102 10344.566342 83.983343 10345.719522 84.097614 10346.86774 - + - + - + - + @@ -23134,7 +23120,7 @@ C 313.795669 10346.064058 314.195321 10348.700584 314.981141 10351.233072 - + @@ -23142,13 +23128,13 @@ C 313.795669 10346.064058 314.195321 10348.700584 314.981141 10351.233072 - + - + @@ -23160,7 +23146,7 @@ C 313.795669 10346.064058 314.195321 10348.700584 314.981141 10351.233072 - + @@ -23169,60 +23155,60 @@ C 313.795669 10346.064058 314.195321 10348.700584 314.981141 10351.233072 - + - + - + - + @@ -23230,7 +23216,7 @@ C 507.087503 10345.133208 507.212426 10346.851694 507.461288 10348.554359 - + @@ -23239,14 +23225,14 @@ C 507.087503 10345.133208 507.212426 10346.851694 507.461288 10348.554359 - + - + @@ -23258,7 +23244,7 @@ C 507.087503 10345.133208 507.212426 10346.851694 507.461288 10348.554359 - + @@ -23270,63 +23256,63 @@ C 507.087503 10345.133208 507.212426 10346.851694 507.461288 10348.554359 - + - + - + - + - + @@ -23334,13 +23320,13 @@ C 711.527072 10344.967091 711.61948 10346.520355 711.803806 10348.064027 - + - + @@ -23352,7 +23338,7 @@ C 711.527072 10344.967091 711.61948 10346.520355 711.803806 10348.064027 - + @@ -23369,41 +23355,41 @@ C 711.527072 10344.967091 711.61948 10346.520355 711.803806 10348.064027 - +" clip-path="url(#p4a831fc16d)" style="fill: #b2df8a; opacity: 0.4"/> - +" clip-path="url(#p4a831fc16d)" style="fill: #fb9a99; opacity: 0.4"/> - + - + @@ -23411,7 +23397,7 @@ z - + @@ -23423,7 +23409,7 @@ z - + @@ -23439,48 +23425,48 @@ z - +" clip-path="url(#p9bc219efbe)" style="fill: #b2df8a; opacity: 0.4"/> - +" clip-path="url(#p9bc219efbe)" style="fill: #e31a1c; opacity: 0.4"/> - + - + - + @@ -23492,7 +23478,7 @@ z - + @@ -23507,67 +23493,67 @@ z - + - + - + - + - + @@ -23576,13 +23562,13 @@ C 498.388299 10524.179515 498.418794 10525.076864 498.479731 10525.972402 - + - + @@ -23594,7 +23580,7 @@ C 498.388299 10524.179515 498.418794 10525.076864 498.479731 10525.972402 - + @@ -23607,48 +23593,48 @@ C 498.388299 10524.179515 498.418794 10525.076864 498.479731 10525.972402 - +" clip-path="url(#p7f5ae248e6)" style="fill: #b2df8a; opacity: 0.4"/> - +" clip-path="url(#p7f5ae248e6)" style="fill: #ff7f00; opacity: 0.4"/> - + - + - + @@ -23660,7 +23646,7 @@ z - + @@ -23673,63 +23659,63 @@ z - + - + - + - + - + @@ -23737,14 +23723,14 @@ C 75.481379 10706.635096 75.950265 10710.103035 76.875397 10713.461686 - + - + @@ -23756,7 +23742,7 @@ C 75.481379 10706.635096 75.950265 10710.103035 76.875397 10713.461686 - + @@ -23766,63 +23752,63 @@ C 75.481379 10706.635096 75.950265 10710.103035 76.875397 10713.461686 - + - + - + - + - + @@ -23831,13 +23817,13 @@ C 281.589269 10704.274792 281.634649 10705.397763 281.725299 10706.51753 - + - + @@ -23849,7 +23835,7 @@ C 281.589269 10704.274792 281.634649 10705.397763 281.725299 10706.51753 - + @@ -23862,67 +23848,67 @@ C 281.589269 10704.274792 281.634649 10705.397763 281.725299 10706.51753 - + - + - + - + - + @@ -23930,13 +23916,13 @@ C 503.841097 10704.628645 503.929374 10706.104609 504.105455 10707.57136 - + - + @@ -23948,7 +23934,7 @@ C 503.841097 10704.628645 503.929374 10706.104609 504.105455 10707.57136 - + @@ -23957,67 +23943,67 @@ C 503.841097 10704.628645 503.929374 10706.104609 504.105455 10707.57136 - + - + - + - + - + @@ -24026,13 +24012,13 @@ C 707.727374 10703.903075 707.748047 10704.654646 707.789371 10705.405223 - + - + @@ -24044,7 +24030,7 @@ C 707.727374 10703.903075 707.748047 10704.654646 707.789371 10705.405223 - + @@ -24056,56 +24042,56 @@ C 707.727374 10703.903075 707.748047 10704.654646 707.789371 10705.405223 - + - + - + - + @@ -24113,21 +24099,21 @@ C 128.07627 10894.330806 130.665104 10896.243918 133.642714 10897.247065 - + - + - + @@ -24143,7 +24129,7 @@ C 128.07627 10894.330806 130.665104 10896.243918 133.642714 10897.247065 - + @@ -24159,56 +24145,56 @@ C 128.07627 10894.330806 130.665104 10896.243918 133.642714 10897.247065 - + - + - + - + @@ -24216,20 +24202,20 @@ C 353.473775 10886.444538 354.002198 10887.180629 354.663801 10887.785497 - + - + - + @@ -24245,7 +24231,7 @@ C 353.473775 10886.444538 354.002198 10887.180629 354.663801 10887.785497 - + @@ -24260,56 +24246,56 @@ C 353.473775 10886.444538 354.002198 10887.180629 354.663801 10887.785497 - + - + - + - + @@ -24317,7 +24303,7 @@ C 519.146381 10889.918344 521.556019 10896.603791 525.956508 10901.915248 - + @@ -24326,7 +24312,7 @@ C 519.146381 10889.918344 521.556019 10896.603791 525.956508 10901.915248 - + @@ -24334,7 +24320,7 @@ C 519.146381 10889.918344 521.556019 10896.603791 525.956508 10901.915248 - + @@ -24350,7 +24336,7 @@ C 519.146381 10889.918344 521.556019 10896.603791 525.956508 10901.915248 - + @@ -24363,60 +24349,60 @@ C 519.146381 10889.918344 521.556019 10896.603791 525.956508 10901.915248 - + - + - + - + @@ -24424,20 +24410,20 @@ C 781.659376 10891.373467 782.998015 10891.224527 784.244682 10890.767994 - + - + - + @@ -24453,7 +24439,7 @@ C 781.659376 10891.373467 782.998015 10891.224527 784.244682 10890.767994 - + @@ -24466,60 +24452,60 @@ C 781.659376 10891.373467 782.998015 10891.224527 784.244682 10890.767994 - + - + - + - + @@ -24527,7 +24513,7 @@ C 120.051098 11066.034463 120.922444 11069.117993 122.568016 11071.797177 - + @@ -24535,14 +24521,14 @@ C 120.051098 11066.034463 120.922444 11069.117993 122.568016 11071.797177 - + - + @@ -24558,7 +24544,7 @@ C 120.051098 11066.034463 120.922444 11069.117993 122.568016 11071.797177 - + @@ -24568,60 +24554,60 @@ C 120.051098 11066.034463 120.922444 11069.117993 122.568016 11071.797177 - + - + - + - + @@ -24629,7 +24615,7 @@ C 307.039509 11064.478464 307.16684 11066.064104 307.420279 11067.631944 - + @@ -24638,13 +24624,13 @@ C 307.039509 11064.478464 307.16684 11066.064104 307.420279 11067.631944 - + - + @@ -24660,7 +24646,7 @@ C 307.039509 11064.478464 307.16684 11066.064104 307.420279 11067.631944 - + @@ -24673,60 +24659,60 @@ C 307.039509 11064.478464 307.16684 11066.064104 307.420279 11067.631944 - + - + - + - + @@ -24734,7 +24720,7 @@ C 539.303179 11066.621207 540.362201 11070.27661 542.356611 11073.429737 - + @@ -24742,14 +24728,14 @@ C 539.303179 11066.621207 540.362201 11070.27661 542.356611 11073.429737 - + - + @@ -24765,7 +24751,7 @@ C 539.303179 11066.621207 540.362201 11070.27661 542.356611 11073.429737 - + @@ -24774,60 +24760,60 @@ C 539.303179 11066.621207 540.362201 11070.27661 542.356611 11073.429737 - + - + - + - + @@ -24835,7 +24821,7 @@ C 730.054113 11065.111809 730.297179 11067.326693 730.77897 11069.495358 - + @@ -24844,14 +24830,14 @@ C 730.054113 11065.111809 730.297179 11067.326693 730.77897 11069.495358 - + - + @@ -24867,7 +24853,7 @@ C 730.054113 11065.111809 730.297179 11067.326693 730.77897 11069.495358 - + @@ -24879,56 +24865,56 @@ C 730.054113 11065.111809 730.297179 11067.326693 730.77897 11069.495358 - + - + - + - + @@ -24936,20 +24922,20 @@ C 128.757118 11251.657162 130.445422 11253.401234 132.487032 11254.639681 - + - + - + @@ -24964,7 +24950,7 @@ C 128.757118 11251.657162 130.445422 11253.401234 132.487032 11254.639681 - + @@ -24979,56 +24965,56 @@ C 128.757118 11251.657162 130.445422 11253.401234 132.487032 11254.639681 - + - + - + - + @@ -25036,7 +25022,7 @@ C 292.634285 11246.449713 293.193251 11250.1185 294.292134 11253.641063 - + @@ -25045,14 +25031,14 @@ C 292.634285 11246.449713 293.193251 11250.1185 294.292134 11253.641063 - + - + @@ -25067,7 +25053,7 @@ C 292.634285 11246.449713 293.193251 11250.1185 294.292134 11253.641063 - + @@ -25080,60 +25066,60 @@ C 292.634285 11246.449713 293.193251 11250.1185 294.292134 11253.641063 - + - + - + - + @@ -25141,20 +25127,20 @@ C 562.013729 11262.144912 565.414633 11261.092157 568.363668 11259.212382 - + - + - + @@ -25169,7 +25155,7 @@ C 562.013729 11262.144912 565.414633 11261.092157 568.363668 11259.212382 - + @@ -25182,60 +25168,60 @@ C 562.013729 11262.144912 565.414633 11261.092157 568.363668 11259.212382 - + - + - + - + @@ -25243,7 +25229,7 @@ C 737.73927 11245.200051 738.073701 11247.628905 738.733219 11249.97842 - + @@ -25251,13 +25237,13 @@ C 737.73927 11245.200051 738.073701 11247.628905 738.733219 11249.97842 - + - + @@ -25272,7 +25258,7 @@ C 737.73927 11245.200051 738.073701 11247.628905 738.733219 11249.97842 - + @@ -25282,60 +25268,60 @@ C 737.73927 11245.200051 738.073701 11247.628905 738.733219 11249.97842 - + - + - + - + @@ -25343,7 +25329,7 @@ C 80.281357 11423.754376 80.333235 11424.878974 80.436825 11425.99939 - + @@ -25352,13 +25338,13 @@ C 80.281357 11423.754376 80.333235 11424.878974 80.436825 11425.99939 - + - + @@ -25373,7 +25359,7 @@ C 80.281357 11423.754376 80.333235 11424.878974 80.436825 11425.99939 - + @@ -25386,60 +25372,60 @@ C 80.281357 11423.754376 80.333235 11424.878974 80.436825 11425.99939 - + - + - + - + @@ -25447,7 +25433,7 @@ C 308.902344 11424.526413 309.089789 11426.419013 309.461947 11428.279386 - + @@ -25455,13 +25441,13 @@ C 308.902344 11424.526413 309.089789 11426.419013 309.461947 11428.279386 - + - + @@ -25476,7 +25462,7 @@ C 308.902344 11424.526413 309.089789 11426.419013 309.461947 11428.279386 - + @@ -25485,60 +25471,60 @@ C 308.902344 11424.526413 309.089789 11426.419013 309.461947 11428.279386 - + - + - + - + @@ -25546,7 +25532,7 @@ C 504.205727 11423.824973 504.263831 11425.020058 504.379832 11426.21021 - + @@ -25555,13 +25541,13 @@ C 504.205727 11423.824973 504.263831 11425.020058 504.379832 11426.21021 - + - + @@ -25576,7 +25562,7 @@ C 504.205727 11423.824973 504.263831 11425.020058 504.379832 11426.21021 - + @@ -25588,63 +25574,63 @@ C 504.205727 11423.824973 504.263831 11425.020058 504.379832 11426.21021 - + - + - + - + - + @@ -25653,13 +25639,13 @@ C 709.561994 11424.191961 709.653249 11425.753409 709.835291 11427.305551 - + - + @@ -25673,7 +25659,7 @@ C 709.561994 11424.191961 709.653249 11425.753409 709.835291 11427.305551 - + @@ -25686,48 +25672,48 @@ C 709.561994 11424.191961 709.653249 11425.753409 709.835291 11427.305551 - +" clip-path="url(#p226d76c7d5)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#p226d76c7d5)" style="fill: #ff7f00; opacity: 0.4"/> - + - + - + @@ -25741,7 +25727,7 @@ z - + @@ -25754,41 +25740,41 @@ z - +" clip-path="url(#p641e319a29)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#p641e319a29)" style="fill: #cab2d6; opacity: 0.4"/> - + - + @@ -25796,7 +25782,7 @@ z - + @@ -25810,7 +25796,7 @@ z - + @@ -25820,41 +25806,41 @@ z - +" clip-path="url(#pf6bd59f150)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#pf6bd59f150)" style="fill: #6a3d9a; opacity: 0.4"/> - + - + @@ -25863,7 +25849,7 @@ z - + @@ -25877,7 +25863,7 @@ z - + @@ -25890,41 +25876,41 @@ z - +" clip-path="url(#pc2ab434090)" style="fill: #e31a1c; opacity: 0.4"/> - +" clip-path="url(#pc2ab434090)" style="fill: #ffff99; opacity: 0.4"/> - + - + @@ -25932,7 +25918,7 @@ z - + @@ -25946,7 +25932,7 @@ z - + @@ -25955,67 +25941,67 @@ z - + - + - + - + - + @@ -26024,13 +26010,13 @@ C 71.703037 11782.992302 71.71743 11783.616431 71.746204 11784.239979 - + - + @@ -26044,7 +26030,7 @@ C 71.703037 11782.992302 71.71743 11783.616431 71.746204 11784.239979 - + @@ -26056,34 +26042,34 @@ C 71.703037 11782.992302 71.71743 11783.616431 71.746204 11784.239979 - +" clip-path="url(#p680a0dec7f)" style="fill: #fdbf6f; opacity: 0.4"/> - +" clip-path="url(#p680a0dec7f)" style="fill: #ff7f00; opacity: 0.4"/> - + @@ -26092,14 +26078,14 @@ z - + - + @@ -26111,7 +26097,7 @@ z - + @@ -26124,60 +26110,60 @@ z - + - + - + - + @@ -26186,7 +26172,7 @@ C 549.871999 11785.026874 550.611892 11787.633931 552.008545 11789.896339 - + @@ -26194,14 +26180,14 @@ C 549.871999 11785.026874 550.611892 11787.633931 552.008545 11789.896339 - + - + @@ -26213,7 +26199,7 @@ C 549.871999 11785.026874 550.611892 11787.633931 552.008545 11789.896339 - + @@ -26223,60 +26209,60 @@ C 549.871999 11785.026874 550.611892 11787.633931 552.008545 11789.896339 - + - + - + - + @@ -26285,7 +26271,7 @@ C 736.73294 11784.020575 736.883382 11785.669634 737.182405 11787.294839 - + @@ -26294,14 +26280,14 @@ C 736.73294 11784.020575 736.883382 11785.669634 737.182405 11787.294839 - + - + @@ -26313,7 +26299,7 @@ C 736.73294 11784.020575 736.883382 11785.669634 737.182405 11787.294839 - + @@ -26326,60 +26312,60 @@ C 736.73294 11784.020575 736.883382 11785.669634 737.182405 11787.294839 - + - + - + - + @@ -26388,7 +26374,7 @@ C 120.514868 11965.433997 121.428455 11968.564832 123.147545 11971.259647 - + @@ -26396,14 +26382,14 @@ C 120.514868 11965.433997 121.428455 11968.564832 123.147545 11971.259647 - + - + @@ -26415,7 +26401,7 @@ C 120.514868 11965.433997 121.428455 11968.564832 123.147545 11971.259647 - + @@ -26424,60 +26410,60 @@ C 120.514868 11965.433997 121.428455 11968.564832 123.147545 11971.259647 - + - + - + - + @@ -26486,7 +26472,7 @@ C 310.927343 11964.215907 311.138402 11966.188635 311.556935 11968.122218 - + @@ -26495,14 +26481,14 @@ C 310.927343 11964.215907 311.138402 11966.188635 311.556935 11968.122218 - + - + @@ -26514,7 +26500,7 @@ C 310.927343 11964.215907 311.138402 11966.188635 311.556935 11968.122218 - + @@ -26526,41 +26512,41 @@ C 310.927343 11964.215907 311.138402 11966.188635 311.556935 11968.122218 - +" clip-path="url(#pefd2bdb703)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#pefd2bdb703)" style="fill: #cab2d6; opacity: 0.4"/> - + - + @@ -26568,7 +26554,7 @@ z - + @@ -26580,7 +26566,7 @@ z - + @@ -26590,41 +26576,41 @@ z - +" clip-path="url(#p572dda3ca9)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#p572dda3ca9)" style="fill: #6a3d9a; opacity: 0.4"/> - + - + @@ -26633,7 +26619,7 @@ z - + @@ -26645,7 +26631,7 @@ z - + @@ -26658,41 +26644,41 @@ z - +" clip-path="url(#p5be6395fed)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#p5be6395fed)" style="fill: #ffff99; opacity: 0.4"/> - + - + @@ -26700,7 +26686,7 @@ z - + @@ -26712,7 +26698,7 @@ z - + @@ -26721,41 +26707,41 @@ z - +" clip-path="url(#p7132a83d4e)" style="fill: #ff7f00; opacity: 0.4"/> - +" clip-path="url(#p7132a83d4e)" style="fill: #b15928; opacity: 0.4"/> - + - + @@ -26764,7 +26750,7 @@ z - + @@ -26776,7 +26762,7 @@ z - + @@ -26788,56 +26774,56 @@ z - + - + - + - + @@ -26845,7 +26831,7 @@ C 505.962805 12145.041703 506.321025 12147.965465 507.029511 12150.813363 - + @@ -26854,14 +26840,14 @@ C 505.962805 12145.041703 506.321025 12147.965465 507.029511 12150.813363 - + - + @@ -26870,7 +26856,7 @@ C 505.962805 12145.041703 506.321025 12147.965465 507.029511 12150.813363 - + @@ -26883,60 +26869,60 @@ C 505.962805 12145.041703 506.321025 12147.965465 507.029511 12150.813363 - + - + - + - + @@ -26944,7 +26930,7 @@ C 738.61856 12145.568418 739.303509 12148.995867 740.633855 12152.191426 - + @@ -26952,14 +26938,14 @@ C 738.61856 12145.568418 739.303509 12148.995867 740.633855 12152.191426 - + - + @@ -26968,7 +26954,7 @@ C 738.61856 12145.568418 739.303509 12148.995867 740.633855 12152.191426 - + @@ -26977,56 +26963,56 @@ C 738.61856 12145.568418 739.303509 12148.995867 740.633855 12152.191426 - + - + - + - + @@ -27034,7 +27020,7 @@ C 79.758977 12325.123314 80.16236 12328.257232 80.959255 12331.301518 - + @@ -27043,14 +27029,14 @@ C 79.758977 12325.123314 80.16236 12328.257232 80.959255 12331.301518 - + - + @@ -27059,7 +27045,7 @@ C 79.758977 12325.123314 80.16236 12328.257232 80.959255 12331.301518 - + @@ -27071,60 +27057,60 @@ C 79.758977 12325.123314 80.16236 12328.257232 80.959255 12331.301518 - + - + - + - + @@ -27133,7 +27119,7 @@ C 341.34421 12323.476137 341.615593 12324.963516 342.145216 12326.366565 - + @@ -27141,13 +27127,13 @@ C 341.34421 12323.476137 341.615593 12324.963516 342.145216 12326.366565 - + - + @@ -27159,7 +27145,7 @@ C 341.34421 12323.476137 341.615593 12324.963516 342.145216 12326.366565 - + @@ -27168,60 +27154,60 @@ C 341.34421 12323.476137 341.615593 12324.963516 342.145216 12326.366565 - + - + - + - + @@ -27230,7 +27216,7 @@ C 532.458943 12323.212475 532.557396 12324.446533 532.753367 12325.666918 - + @@ -27239,13 +27225,13 @@ C 532.458943 12323.212475 532.557396 12324.446533 532.753367 12325.666918 - + - + @@ -27257,7 +27243,7 @@ C 532.458943 12323.212475 532.557396 12324.446533 532.753367 12325.666918 - + @@ -27269,60 +27255,60 @@ C 532.458943 12323.212475 532.557396 12324.446533 532.753367 12325.666918 - + - + - + - + @@ -27330,7 +27316,7 @@ C 723.784495 12323.826162 723.93785 12325.67269 724.242984 12327.497055 - + @@ -27339,14 +27325,14 @@ C 723.784495 12323.826162 723.93785 12325.67269 724.242984 12327.497055 - + - + @@ -27354,7 +27340,7 @@ C 723.784495 12323.826162 723.93785 12325.67269 724.242984 12327.497055 - + @@ -27365,7 +27351,7 @@ C 723.784495 12323.826162 723.93785 12325.67269 724.242984 12327.497055 - + - + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + - - + + diff --git a/docs/img/has_attribute.svg b/docs/img/has_attribute.svg index 828a5d04b..81a2f025d 100644 --- a/docs/img/has_attribute.svg +++ b/docs/img/has_attribute.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:14:04.833527 + 2023-11-02T01:02:28.909004 image/svg+xml @@ -32,38 +32,38 @@ z - - - + - + - + - + @@ -369,38 +369,38 @@ z - - - + @@ -408,7 +408,7 @@ z - + @@ -416,14 +416,14 @@ z - + - + @@ -523,38 +523,38 @@ z - - - + @@ -562,7 +562,7 @@ z - + @@ -570,14 +570,14 @@ z - + - + @@ -715,38 +715,38 @@ z - - - + @@ -754,7 +754,7 @@ z - + - + - + @@ -854,38 +854,38 @@ z - - - + @@ -893,7 +893,7 @@ z - + - + - + - - - + @@ -1056,7 +1056,7 @@ z - + - + - + - + - + diff --git a/docs/img/providers.svg b/docs/img/providers.svg index 7afad2a24..28201dbd7 100644 --- a/docs/img/providers.svg +++ b/docs/img/providers.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:15:03.562662 + 2023-11-02T01:03:03.550775 image/svg+xml @@ -896,7 +896,7 @@ L 583.2 10.8 - + - + diff --git a/docs/img/regex_report.svg b/docs/img/regex_report.svg index d8158d43e..6e4daf527 100644 --- a/docs/img/regex_report.svg +++ b/docs/img/regex_report.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:15:04.213471 + 2023-11-02T01:03:03.944201 image/svg+xml @@ -858,8 +858,8 @@ z diff --git a/docs/img/xrefs.svg b/docs/img/xrefs.svg index e4dfe7e3f..b3036eca9 100644 --- a/docs/img/xrefs.svg +++ b/docs/img/xrefs.svg @@ -6,7 +6,7 @@ - 2023-11-01T01:13:56.988989 + 2023-11-02T01:02:23.769137 image/svg+xml @@ -1246,7 +1246,7 @@ L 76.647926 69906.180447 L 76.647926 32.3969 L 57.335023 32.3969 z -" clip-path="url(#p71e9d97aa0)" style="fill: #3a923a; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #3a923a; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="fill: #e1812c; stroke: #ffffff; stroke-linejoin: miter"/> +" clip-path="url(#pe5329afb14)" style="stroke: #000000; stroke-linejoin: miter"/> - + - + - + diff --git a/exports/contexts/bioregistry.context.jsonld b/exports/contexts/bioregistry.context.jsonld index 5cc906e16..cd5bd5068 100644 --- a/exports/contexts/bioregistry.context.jsonld +++ b/exports/contexts/bioregistry.context.jsonld @@ -954,6 +954,7 @@ "ncbi.genome": "https://www.ncbi.nlm.nih.gov/genome/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "ncbigene": "https://www.ncbi.nlm.nih.gov/gene/", "ncbiprotein": "https://www.ncbi.nlm.nih.gov/protein/", "ncbitaxon": "http://purl.obolibrary.org/obo/NCBITaxon_", diff --git a/exports/contexts/bioregistry.context.ttl b/exports/contexts/bioregistry.context.ttl index 853f0b710..445b8efb3 100644 --- a/exports/contexts/bioregistry.context.ttl +++ b/exports/contexts/bioregistry.context.ttl @@ -956,6 +956,7 @@ [ sh:prefix "ncbi.genome" ; sh:namespace "https://www.ncbi.nlm.nih.gov/genome/" ; sh:pattern "^\d+$" ], [ sh:prefix "ncbi.resource" ; sh:namespace "https://bioregistry.io/metaregistry/ncbi/" ], [ sh:prefix "ncbibook" ; sh:namespace "https://www.ncbi.nlm.nih.gov/books/" ; sh:pattern "^NBK\d+$" ], + [ sh:prefix "ncbidrs" ; sh:namespace "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/" ; sh:pattern "^[0-9a-fA-F]{32}$" ], [ sh:prefix "ncbigene" ; sh:namespace "https://www.ncbi.nlm.nih.gov/gene/" ; sh:pattern "^\d+$" ], [ sh:prefix "ncbiprotein" ; sh:namespace "https://www.ncbi.nlm.nih.gov/protein/" ; sh:pattern "^(\w+\d+(\.\d+)?)|(NP_\d+)$" ], [ sh:prefix "ncbitaxon" ; sh:namespace "http://purl.obolibrary.org/obo/NCBITaxon_" ; sh:pattern "^\d+$" ], diff --git a/exports/contexts/bioregistry.epm.json b/exports/contexts/bioregistry.epm.json index 593064a56..17d7799c1 100644 --- a/exports/contexts/bioregistry.epm.json +++ b/exports/contexts/bioregistry.epm.json @@ -16831,6 +16831,21 @@ "ncbibook:" ] }, + { + "prefix": "ncbidrs", + "uri_prefix": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "uri_prefix_synonyms": [ + "NCBIDRS:", + "http://bioregistry.io/ncbidrs:", + "http://identifiers.org/ncbidrs/", + "http://identifiers.org/ncbidrs:", + "http://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "https://bioregistry.io/ncbidrs:", + "https://identifiers.org/ncbidrs/", + "https://identifiers.org/ncbidrs:", + "ncbidrs:" + ] + }, { "prefix": "ncbigene", "prefix_synonyms": [ diff --git a/exports/contexts/bioregistry.rpm.json b/exports/contexts/bioregistry.rpm.json index 8c016de8a..061afeb2b 100644 --- a/exports/contexts/bioregistry.rpm.json +++ b/exports/contexts/bioregistry.rpm.json @@ -1335,6 +1335,7 @@ "NCBI.GI:": "genbank", "NCBI.RESOURCE:": "ncbi.resource", "NCBIBOOK:": "ncbibook", + "NCBIDRS:": "ncbidrs", "NCBIGENE:": "ncbigene", "NCBIGI:": "genbank", "NCBIGene:": "ncbigene", @@ -5411,6 +5412,7 @@ "http://bioregistry.io/ncbi.gi:": "genbank", "http://bioregistry.io/ncbi.resource:": "ncbi.resource", "http://bioregistry.io/ncbibook:": "ncbibook", + "http://bioregistry.io/ncbidrs:": "ncbidrs", "http://bioregistry.io/ncbigene:": "ncbigene", "http://bioregistry.io/ncbigi:": "genbank", "http://bioregistry.io/ncbiprotein:": "ncbiprotein", @@ -7569,6 +7571,8 @@ "http://identifiers.org/nbn:": "nbn", "http://identifiers.org/nbrc/": "nbrc", "http://identifiers.org/nbrc:": "nbrc", + "http://identifiers.org/ncbidrs/": "ncbidrs", + "http://identifiers.org/ncbidrs:": "ncbidrs", "http://identifiers.org/ncbigene/": "ncbigene", "http://identifiers.org/ncbigene:": "ncbigene", "http://identifiers.org/ncbiprotein/": "ncbiprotein", @@ -8203,6 +8207,7 @@ "http://lipidbank.jp/cgi-bin/detail.cgi?id=": "lipidbank", "http://lisanwanglab.org/DASHR/entry/": "dashr", "http://lobid.org/gnd/": "gnd", + "http://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/": "ncbidrs", "http://loinc.org/": "loinc", "http://loinc.org/rdf/": "loinc", "http://lotus.naturalproducts.net/compound/lotus_id/": "lotus", @@ -12972,6 +12977,7 @@ "https://bioregistry.io/ncbi.gi:": "genbank", "https://bioregistry.io/ncbi.resource:": "ncbi.resource", "https://bioregistry.io/ncbibook:": "ncbibook", + "https://bioregistry.io/ncbidrs:": "ncbidrs", "https://bioregistry.io/ncbigene:": "ncbigene", "https://bioregistry.io/ncbigi:": "genbank", "https://bioregistry.io/ncbiprotein:": "ncbiprotein", @@ -15130,6 +15136,8 @@ "https://identifiers.org/nbn:": "nbn", "https://identifiers.org/nbrc/": "nbrc", "https://identifiers.org/nbrc:": "nbrc", + "https://identifiers.org/ncbidrs/": "ncbidrs", + "https://identifiers.org/ncbidrs:": "ncbidrs", "https://identifiers.org/ncbigene/": "ncbigene", "https://identifiers.org/ncbigene:": "ncbigene", "https://identifiers.org/ncbiprotein/": "ncbiprotein", @@ -15764,6 +15772,7 @@ "https://lipidbank.jp/cgi-bin/detail.cgi?id=": "lipidbank", "https://lisanwanglab.org/DASHR/entry/": "dashr", "https://lobid.org/gnd/": "gnd", + "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/": "ncbidrs", "https://loinc.org/": "loinc", "https://loinc.org/rdf/": "loinc", "https://lotus.naturalproducts.net/compound/lotus_id/": "lotus", @@ -18637,6 +18646,7 @@ "ncbi_taxid:": "ncbitaxon", "ncbi_taxon_id:": "ncbitaxon", "ncbibook:": "ncbibook", + "ncbidrs:": "ncbidrs", "ncbigene:": "ncbigene", "ncbigi:": "genbank", "ncbiprotein:": "ncbiprotein", diff --git a/exports/contexts/obo.context.jsonld b/exports/contexts/obo.context.jsonld index 387e8043c..87f6613ff 100644 --- a/exports/contexts/obo.context.jsonld +++ b/exports/contexts/obo.context.jsonld @@ -1056,6 +1056,7 @@ "ncbi.genome": "https://www.ncbi.nlm.nih.gov/genome/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "nci.drug": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", "ncim": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", "ndc": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", diff --git a/exports/contexts/obo.context.ttl b/exports/contexts/obo.context.ttl index 662c6d59c..d0f72ebdb 100644 --- a/exports/contexts/obo.context.ttl +++ b/exports/contexts/obo.context.ttl @@ -1058,6 +1058,7 @@ [ sh:prefix "ncbi.genome" ; sh:namespace "https://www.ncbi.nlm.nih.gov/genome/" ; sh:pattern "^\d+$" ], [ sh:prefix "ncbi.resource" ; sh:namespace "https://bioregistry.io/metaregistry/ncbi/" ], [ sh:prefix "ncbibook" ; sh:namespace "https://www.ncbi.nlm.nih.gov/books/" ; sh:pattern "^NBK\d+$" ], + [ sh:prefix "ncbidrs" ; sh:namespace "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/" ; sh:pattern "^[0-9a-fA-F]{32}$" ], [ sh:prefix "nci.drug" ; sh:namespace "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/" ], [ sh:prefix "ncim" ; sh:namespace "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=" ; sh:pattern "^C\d+$" ], [ sh:prefix "ndc" ; sh:namespace "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/" ; sh:pattern "^\d+\-\d+\-\d+$" ], diff --git a/exports/contexts/obo.epm.json b/exports/contexts/obo.epm.json index 58d70bb95..56c1d093a 100644 --- a/exports/contexts/obo.epm.json +++ b/exports/contexts/obo.epm.json @@ -14163,6 +14163,19 @@ "https://bioregistry.io/ncbibook:" ] }, + { + "prefix": "ncbidrs", + "uri_prefix": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/ncbidrs:", + "http://identifiers.org/ncbidrs/", + "http://identifiers.org/ncbidrs:", + "http://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "https://bioregistry.io/ncbidrs:", + "https://identifiers.org/ncbidrs/", + "https://identifiers.org/ncbidrs:" + ] + }, { "prefix": "NCBIGene", "prefix_synonyms": [ diff --git a/exports/contexts/obo_synonyms.context.jsonld b/exports/contexts/obo_synonyms.context.jsonld index 83cade953..544dde40b 100644 --- a/exports/contexts/obo_synonyms.context.jsonld +++ b/exports/contexts/obo_synonyms.context.jsonld @@ -1462,6 +1462,7 @@ "ncbi.gi": "https://www.ncbi.nlm.nih.gov/nucleotide/", "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "ncbigi": "https://www.ncbi.nlm.nih.gov/nucleotide/", "nci.drug": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", "ncim": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", diff --git a/exports/contexts/obo_synonyms.context.ttl b/exports/contexts/obo_synonyms.context.ttl index b09d3f4e0..62e11a415 100644 --- a/exports/contexts/obo_synonyms.context.ttl +++ b/exports/contexts/obo_synonyms.context.ttl @@ -1464,6 +1464,7 @@ [ sh:prefix "ncbi.gi" ; sh:namespace "https://www.ncbi.nlm.nih.gov/nucleotide/" ; sh:pattern "^\d+$" ], [ sh:prefix "ncbi.resource" ; sh:namespace "https://bioregistry.io/metaregistry/ncbi/" ], [ sh:prefix "ncbibook" ; sh:namespace "https://www.ncbi.nlm.nih.gov/books/" ; sh:pattern "^NBK\d+$" ], + [ sh:prefix "ncbidrs" ; sh:namespace "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/" ; sh:pattern "^[0-9a-fA-F]{32}$" ], [ sh:prefix "ncbigi" ; sh:namespace "https://www.ncbi.nlm.nih.gov/nucleotide/" ; sh:pattern "^\d+$" ], [ sh:prefix "nci.drug" ; sh:namespace "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/" ], [ sh:prefix "ncim" ; sh:namespace "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=" ; sh:pattern "^C\d+$" ], diff --git a/exports/rdf/bioregistry.jsonld b/exports/rdf/bioregistry.jsonld index 382c60d3c..42363341a 100644 --- a/exports/rdf/bioregistry.jsonld +++ b/exports/rdf/bioregistry.jsonld @@ -369,8 +369,8 @@ "dc_cl": "http://purl.obolibrary.org/obo/DC_CL_", "dcam": "http://purl.org/dc/dcam/", "dcat": "http://www.w3.org/ns/dcat#", + "dcmitype": "http://purl.org/dc/dcmitype/", "dcterms": "http://purl.org/dc/terms/", - "dctypes": "http://purl.org/dc/dcmitype/", "ddanat": "http://purl.obolibrary.org/obo/DDANAT_", "ddinter.drug": "http://ddinter.scbdd.com/ddinter/drug-detail/", "ddinter.interaction": "http://ddinter.scbdd.com/ddinter/interact/", @@ -998,6 +998,7 @@ "ncbi.resource": "https://bioregistry.io/metaregistry/ncbi/resolve/", "ncbi.resource1": "https://bioregistry.io/metaregistry/ncbi/", "ncbibook": "https://www.ncbi.nlm.nih.gov/books/", + "ncbidrs": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", "ncbigene": "https://www.ncbi.nlm.nih.gov/gene/", "ncbigi": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=", "ncbitaxon": "http://purl.obolibrary.org/obo/NCBITaxon_", @@ -1640,225 +1641,234 @@ }, "@graph": [ { - "@id": "https://registry.bio2kg.org/resource/goa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-4972-3782", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gerald Guala" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "itiswebmaster@itis.gov" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.yqn857", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.wikidata.org/entity/P244", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools", + "@id": "https://registry.identifiers.org/registry/p3db.site", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000002", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A type for entries in the Bioregistry's metaregistry." - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Registry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/hcpcs", + "@id": "https://bioregistry.io/registry/disdriv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers.", + "http://purl.org/dc/terms/description": "Drivers of human diseases including environmental, maternal and social exposures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/DiseaseOntology/DiseaseDriversOntology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Healthcare Common Procedure Coding System" + "@value": "Disease Drivers Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.x81wz8" + "@id": "http://www.ontobee.org/ontology/DISDRIV" }, { - "@id": "http://aber-owl.net/ontology/HCPCS" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HCPCS" + "@id": "http://aber-owl.net/ontology/DISDRIV" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS" + "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV" + }, + { + "@id": "https://www.obofoundry.org/ontology/disdriv" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "business administration" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo" + "@id": "http://www.disease-ontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DISDRIV_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/disdriv.owl" }, - "https://bioregistry.io/schema/#0000005": "G8944", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/HCPCS/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N906e186161904af98dd7f472fd03689b" + "@id": "https://orcid.org/0000-0001-8910-9851" }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/HCPCS/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DISDRIV_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/HCPCS/G8944" + "@id": "http://purl.obolibrary.org/obo/DISDRIV_0000000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hcpcs" + "@value": "disdriv" } }, { - "@id": "_:N906e186161904af98dd7f472fd03689b", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cynthia Hake" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Cynthia.Hake@cms.hhs.gov" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://fairsharing.org/FAIRsharing.f1449d", + "@id": "http://edamontology.org/data_1146", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/wbbt", + "@id": "http://aber-owl.net/ontology/EDDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-6309-7327", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Nicolas Le Novere" - }, - { - "@value": "Nicolas Le Novère" - } - ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "n.lenovere@gmail.com" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/tahe", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/eupath", + "@id": "https://bioregistry.io/registry/gecko", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.", + "http://purl.org/dc/terms/description": "An ontology to represent genomics cohort attributes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" + "@id": "https://github.com/IHCC-cohorts/GECKO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VEuPathDB ontology" + "@value": "Genomics Cohorts Knowledge Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/eupath" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9rhr9j" + "@id": "http://aber-owl.net/ontology/GECKO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH" + "@id": "https://fairsharing.org/FAIRsharing.3da56b" }, { - "@id": "http://www.ontobee.org/ontology/EUPATH" + "@id": "https://bioportal.bioontology.org/ontologies/GECKO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath" + "@id": "http://www.ontobee.org/ontology/GECKO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EUPATH" + "@id": "https://www.obofoundry.org/ontology/gecko" }, { - "@id": "http://aber-owl.net/ontology/EUPATH" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "epidemiology" + "@value": "ontology" }, { - "@value": "population genetics" + "@value": "genomics" }, { - "@value": "biomedical science" + "@value": "statistics" }, { - "@value": "functional genomics" + "@value": "life science" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" + "@id": "https://github.com/IHCC-cohorts/GECKO" }, - "https://bioregistry.io/schema/#0000005": "0010316", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EUPATH_$1", + "https://bioregistry.io/schema/#0000005": "0000044", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GECKO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/eupath.owl" + "@id": "http://purl.obolibrary.org/obo/gecko.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4871-5569" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GECKO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GECKO_0000044" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gecko" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/nlx.sub", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Subcellular Entities" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "cellular components" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, + "https://bioregistry.io/schema/#0000005": "090803", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" + "@id": "https://orcid.org/0000-0002-7509-4801" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EUPATH_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "nif_subcellular" + }, + { + "@value": "NLXSUB" + } + ], + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/EUPATH_0010316" + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_090803" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eupath" + "@value": "nlx.sub" } }, { @@ -1868,11206 +1878,13272 @@ } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv", + "@id": "https://registry.bio2kg.org/resource/arrayexpress", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank", + "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERO", + "@id": "https://registry.bio2kg.org/resource/pazar", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/idpo", + "@id": "https://bioportal.bioontology.org/ontologies/MAXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ideal", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.", + "http://purl.org/dc/terms/description": "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Intrinsically Disordered Proteins Ontology" + "@value": "Intrinsically Disordered proteins with Extensive Annotations and Literature" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "proteins" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL" }, { - "@value": "structural biochemistry" + "@id": "https://www.uniprot.org/database/DB-0251" }, { - "@value": "protein structure" + "@id": "https://registry.identifiers.org/registry/ideal" }, { - "@value": "structural bioinformatics" + "@id": "https://fairsharing.org/FAIRsharing.h3y42f" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "biology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.disprot.org/ontology" + "@id": "https://www.ideal-db.org" }, - "https://bioregistry.io/schema/#0000005": "00056", - "https://bioregistry.io/schema/#0000006": "https://www.disprot.org/idpo/IDPO:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000005": "IID00001", + "https://bioregistry.io/schema/#0000006": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^IID\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0341-4888" - }, - "https://bioregistry.io/schema/#0000024": "https://www.disprot.org/idpo/IDPO:", + "https://bioregistry.io/schema/#0000024": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.disprot.org/idpo/IDPO:00056" + "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=IID00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "idpo" + "@value": "ideal" } }, { - "@id": "https://bioregistry.io/registry/miapa", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pirsf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.karvzj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/did", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.", + "http://purl.org/dc/terms/description": "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/evoinfo/miapa" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimum Anformation About a Phylogenetic Analysis Ontology" + "@value": "Decentralized Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ca48xs" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA" - }, - { - "@id": "http://www.ontobee.org/ontology/MIAPA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MIAPA" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa" - }, - { - "@id": "http://aber-owl.net/ontology/MIAPA" - }, - { - "@id": "https://www.obofoundry.org/ontology/miapa" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "phylogenetics" - }, - { - "@value": "life science" - }, - { - "@value": "phylogeny" + "@id": "https://registry.identifiers.org/registry/did" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.evoio.org/wiki/MIAPA" - }, - "https://bioregistry.io/schema/#0000005": "0000010", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIAPA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/miapa.owl" + "@id": "https://w3c-ccg.github.io/did-spec/" }, + "https://bioregistry.io/schema/#0000005": "sov:WRfXPg8dantKVubE3HX8pw", + "https://bioregistry.io/schema/#0000006": "https://uniresolver.io/#did:$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9107-0714" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIAPA_", + "https://bioregistry.io/schema/#0000024": "https://uniresolver.io/#did:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MIAPA_0000010" + "@id": "https://uniresolver.io/#did:sov:WRfXPg8dantKVubE3HX8pw" }, "https://bioregistry.io/schema/#0000029": { - "@value": "miapa" + "@value": "did" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex", + "@id": "http://www.ontobee.org/ontology/OAE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb", + "@id": "http://www.wikidata.org/entity/P3289", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL", + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.10zsxb", + "@id": "https://www.obofoundry.org/ontology/colao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9aa0zp", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "http://aber-owl.net/ontology/TEDDY", + "@id": "https://registry.bio2kg.org/resource/omia", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/dragondb.allele", + "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0003-4423-4370", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/fr" - }, - { - "@id": "https://bioregistry.io/registry/pba" - }, - { - "@id": "https://bioregistry.io/registry/bioregistry.registry" - }, - { - "@id": "https://bioregistry.io/registry/snap" - }, - { - "@id": "https://bioregistry.io/registry/oslc" - }, - { - "@id": "https://bioregistry.io/registry/hl7.v3codesystem" - }, + "@id": "https://bioportal.bioontology.org/ontologies/CHMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/sdbs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Spectral Database for Organic Compounds" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/frapo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs" }, { - "@id": "https://bioregistry.io/registry/emmo.cif" + "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS" }, { - "@id": "https://bioregistry.io/registry/pictar" - }, + "@id": "https://registry.identifiers.org/registry/sdbs" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi" + }, + "https://bioregistry.io/schema/#0000005": "4544", + "https://bioregistry.io/schema/#0000006": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=4544" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sdbs" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PORO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.resource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/fishbase.species" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://bioregistry.io/registry/uminctr" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Resource" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.uniprot.org/database/" + }, + "https://bioregistry.io/schema/#0000005": "DB-0174", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/database/$1", + "https://bioregistry.io/schema/#0000008": "^DB-\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/iso15926" + "@value": "uniprot.database" }, { - "@id": "https://bioregistry.io/registry/bactibase" - }, + "@value": "uniprot.db" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/database/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.uniprot.org/database/DB-0174" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uniprot.resource" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://www.ontobee.org/ontology/SEP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/citexplore", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MONDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/IDO-COVID-19", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GEXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/hdr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Homeodomain Research" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ihw" + "@id": "https://registry.bio2kg.org/resource/hdr" }, { - "@id": "https://bioregistry.io/registry/icd10pcs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr" }, { - "@id": "https://bioregistry.io/registry/schem" + "@id": "https://bioregistry.io/metaregistry/biocontext/HDR" }, { - "@id": "https://bioregistry.io/registry/mirbase.family" - }, + "@id": "https://registry.identifiers.org/registry/hdr" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://research.nhgri.nih.gov/apps/homeodomain/web/" + }, + "https://bioregistry.io/schema/#0000005": "63", + "https://bioregistry.io/schema/#0000006": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=63" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hdr" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/grin", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OMIT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NEMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/gaz", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A gazetteer constructed on ontological principles. The countries are actively maintained.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EnvironmentOntology/gaz" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gazetteer" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/itis" + "@id": "https://fairsharing.org/FAIRsharing.wkdjpb" }, { - "@id": "https://bioregistry.io/registry/hdl" + "@id": "http://www.wikidata.org/entity/P6778" }, { - "@id": "https://bioregistry.io/registry/dcterms" + "@id": "https://www.obofoundry.org/ontology/gaz" }, { - "@id": "https://bioregistry.io/registry/shex" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz" }, { - "@id": "https://bioregistry.io/registry/sh" + "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ" }, { - "@id": "https://bioregistry.io/registry/caloha" + "@id": "https://bioportal.bioontology.org/ontologies/GAZ" }, { - "@id": "https://bioregistry.io/registry/scomp" + "@id": "http://www.ontobee.org/ontology/GAZ" }, { - "@id": "https://bioregistry.io/registry/lspci" - }, + "@id": "http://aber-owl.net/ontology/GAZ" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/diseasesdb" + "@value": "environmental science" }, { - "@id": "https://bioregistry.io/registry/google.book" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/scholia.resource" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://environmentontology.github.io/gaz/" + }, + "https://bioregistry.io/schema/#0000005": "00620027", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GAZ_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/gaz.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8910-9851" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GAZ_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GAZ_00620027" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gaz" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dg.anv0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CVDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/refseq", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Reference Sequence Collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/inaturalist.user" + "@id": "https://www.re3data.org/repository/r3d100010285" }, { - "@id": "https://bioregistry.io/registry/ncbibook" + "@id": "https://fairsharing.org/FAIRsharing.4jg0qw" }, { - "@id": "https://bioregistry.io/registry/geonames.feature" + "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq" }, { - "@id": "https://bioregistry.io/registry/bridgedb" + "@id": "http://edamontology.org/data_1098" }, { - "@id": "https://bioregistry.io/registry/bams" + "@id": "https://registry.identifiers.org/registry/refseq" }, { - "@id": "https://bioregistry.io/registry/frbrer" + "@id": "https://www.uniprot.org/database/DB-0117" }, { - "@id": "https://bioregistry.io/registry/sdis" + "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq" }, { - "@id": "https://bioregistry.io/registry/emea" + "@id": "https://registry.bio2kg.org/resource/refseq" }, { - "@id": "https://bioregistry.io/registry/alzforum.mutation" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280" }, { - "@id": "https://bioregistry.io/registry/mediadive.ingredient" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/reaxys" + "@value": "dna" }, { - "@id": "https://bioregistry.io/registry/go.resource" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/fbtc" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/ncats.drug" + "@value": "rna" }, { - "@id": "https://bioregistry.io/registry/novus" + "@value": "computational biology" }, { - "@id": "https://bioregistry.io/registry/npo" - }, + "@value": "genetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/projects/RefSeq/" + }, + "https://bioregistry.io/schema/#0000005": "NP_012345", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1", + "https://bioregistry.io/schema/#0000008": "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/ncbiprotein" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "REFSEQ_PROT" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/protein/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/protein/NP_012345" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "refseq" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.ontobee.org/ontology/WBPhenotype", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FB-DV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ligandbook", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LigandBook" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/lonza" + "@id": "https://registry.identifiers.org/registry/ligandbook" }, { - "@id": "https://bioregistry.io/registry/idog" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ligandbook.org/" + }, + "https://bioregistry.io/schema/#0000005": "785", + "https://bioregistry.io/schema/#0000006": "https://ligandbook.org/package/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://ligandbook.org/package/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ligandbook.org/package/785" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ligandbook" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w4x6n4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/mgnify.samp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MGnify Sample" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/multicellds" + "@id": "https://registry.identifiers.org/registry/mgnify.samp" }, { - "@id": "https://bioregistry.io/registry/ctis" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/metagenomics" + }, + "https://bioregistry.io/schema/#0000005": "SRS086444", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/samples/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/samples/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/metagenomics/samples/SRS086444" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mgnify.samp" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w2eeqr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.metagenome", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" + "@id": "https://bioregistry.io/registry/kegg" }, { - "@id": "https://bioregistry.io/registry/glygen" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Metagenome" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ccrid" + "@id": "https://registry.identifiers.org/registry/kegg.metagenome" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.antibody" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome" }, { - "@id": "https://bioregistry.io/registry/dbvar.study" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME" }, { - "@id": "https://bioregistry.io/registry/clingene" - }, + "@id": "https://registry.bio2kg.org/resource/kegg.metagenome" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.jp/kegg/catalog/org_list3.html" + }, + "https://bioregistry.io/schema/#0000005": "T30002", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^T3\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.kegg.jp/entry/T30002" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.metagenome" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/peptideatlas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0027", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/echobase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EchoBASE post-genomic database for Escherichia coli" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/drugbank.condition" + "@id": "https://registry.bio2kg.org/resource/echobase" }, { - "@id": "https://bioregistry.io/registry/edam.topic" + "@id": "https://www.re3data.org/repository/r3d100011646" }, { - "@id": "https://bioregistry.io/registry/agilent.probe" + "@id": "https://registry.identifiers.org/registry/echobase" }, { - "@id": "https://bioregistry.io/registry/rxnorm" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE" }, { - "@id": "https://bioregistry.io/registry/linkml" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE" }, { - "@id": "https://bioregistry.io/registry/nsf.award" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase" }, { - "@id": "https://bioregistry.io/registry/datacite" - }, + "@id": "https://www.uniprot.org/database/DB-0020" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/umls.aui" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/uniprot.journal" - }, + "@value": "gene expression" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.york.ac.uk/" + }, + "https://bioregistry.io/schema/#0000005": "EB0170", + "https://bioregistry.io/schema/#0000006": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1", + "https://bioregistry.io/schema/#0000008": "^EB\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0170" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "echobase" + } + }, + { + "@id": "https://bioregistry.io/registry/pdumdv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Life cycle stages for Platynereis dumerilii", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/developmental-stage-ontologies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Platynereis Developmental Stages" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/gard" + "@id": "http://www.ontobee.org/ontology/PdumDv" }, { - "@id": "https://bioregistry.io/registry/gc" + "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV" }, { - "@id": "https://bioregistry.io/registry/nsc" + "@id": "https://fairsharing.org/FAIRsharing.493qns" }, { - "@id": "https://bioregistry.io/registry/hsdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv" }, { - "@id": "https://bioregistry.io/registry/dsm5" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV" }, { - "@id": "https://bioregistry.io/registry/asrp" + "@id": "http://aber-owl.net/ontology/PDUMDV" }, { - "@id": "https://bioregistry.io/registry/ctcae" - }, + "@id": "https://www.obofoundry.org/ontology/pdumdv" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/hcpcs" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/time" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/hc.din" + "@value": "developmental biology" }, { - "@id": "https://bioregistry.io/registry/hathitrust" - }, - { - "@id": "https://bioregistry.io/registry/oboinowl" - }, - { - "@id": "https://bioregistry.io/registry/nist" - }, - { - "@id": "https://bioregistry.io/registry/oa" - }, - { - "@id": "https://bioregistry.io/registry/storedb.dataset" - }, - { - "@id": "https://bioregistry.io/registry/syoid" - }, - { - "@id": "https://bioregistry.io/registry/hesa" - }, - { - "@id": "https://bioregistry.io/registry/ddinter.interaction" - }, - { - "@id": "https://bioregistry.io/registry/confident.event" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv" + }, + "https://bioregistry.io/schema/#0000005": "0001410", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PdumDv_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/pdumdv.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9415-5104" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "PdumDv" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PdumDv_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PdumDv_0001410" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pdumdv" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11198", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/drugbank.category", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Close to 5K Categorizations for drugs, similar to ATCC.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/pubchem.element" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/fbql" - }, + "@id": "https://bioregistry.io/registry/drugbank" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DrugBank Drug Category" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cao" + "@value": "drugs" }, { - "@id": "https://bioregistry.io/registry/bcrc" + "@value": "topics" }, { - "@id": "https://bioregistry.io/registry/ctri" + "@value": "metascience" }, { - "@id": "https://bioregistry.io/registry/uniprot.ptm" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://go.drugbank.com/categories" + }, + "https://bioregistry.io/schema/#0000005": "DBCAT000600", + "https://bioregistry.io/schema/#0000006": "https://www.drugbank.ca/categories/$1", + "https://bioregistry.io/schema/#0000008": "^DBCAT\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.drugbank.ca/categories/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.drugbank.ca/categories/DBCAT000600" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drugbank.category" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/publons.researcher", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Publons Researcher" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://publons.com/researcher" + }, + "https://bioregistry.io/schema/#0000005": "1981638", + "https://bioregistry.io/schema/#0000006": "https://publons.com/researcher/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://publons.com/researcher/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://publons.com/researcher/1981638" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "publons.researcher" + } + }, + { + "@id": "http://aber-owl.net/ontology/FBCV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/clinvar.submission", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ClinVar Submission" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cgnc" + "@id": "https://registry.identifiers.org/registry/clinvar.submission" }, { - "@id": "https://bioregistry.io/registry/fyler" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission" }, { - "@id": "https://bioregistry.io/registry/ncbi.resource" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" + }, + "https://bioregistry.io/schema/#0000005": "SCV000151292", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1", + "https://bioregistry.io/schema/#0000008": "^SCV\\d+(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/clinvar?term=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ncbi.nlm.nih.gov/clinvar?term=SCV000151292" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "clinvar.submission" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0058", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/STATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100013432", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://registry.identifiers.org/registry/narcis", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/adms", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SEMICeu/ADMS/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Asset Description Metadata Schema Vocabulary" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.w3.org/ns/adms" + }, + "https://bioregistry.io/schema/#0000005": "Asset", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/adms#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nd282c8c166964c4586fa4146207b2dc9" + }, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/adms#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/ns/adms#Asset" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "adms" + } + }, + { + "@id": "_:Nd282c8c166964c4586fa4146207b2dc9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bert Van Nuffelen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bert.van.nuffelen@tenforce.com" + } + }, + { + "@id": "http://aber-owl.net/ontology/SYMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/hivreagentprogram", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIH HIV Reagent Program" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.hivreagentprogram.org/" + }, + "https://bioregistry.io/schema/#0000005": "ARP-1513", + "https://bioregistry.io/schema/#0000006": "https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hivreagentprogram:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.hivreagentprogram.org/Catalog/HRPCellLines/ARP-1513.aspx" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hivreagentprogram" + } + }, + { + "@id": "https://bioregistry.io/registry/ssbd.project", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "System Science of Biological Dynamics project" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ssbd.riken.jp" + }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://ssbd.riken.jp/database/project/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://ssbd.riken.jp/database/project/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ssbd.riken.jp/database/project/1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ssbd.project" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.39fd58", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oma.hog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/mgijax/mammalian-phenotype-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mammalian Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/genbank" + "@id": "https://registry.identifiers.org/registry/mp" }, { - "@id": "https://bioregistry.io/registry/credit" + "@id": "https://fairsharing.org/FAIRsharing.kg1x4z" }, { - "@id": "https://bioregistry.io/registry/abcd" + "@id": "http://www.ontobee.org/ontology/MP" }, { - "@id": "https://bioregistry.io/registry/worldavatar.kin" + "@id": "https://www.obofoundry.org/ontology/mp" }, { - "@id": "https://bioregistry.io/registry/molbase.sheffield" + "@id": "https://bioregistry.io/metaregistry/biocontext/MP" }, { - "@id": "https://bioregistry.io/registry/inhand" + "@id": "https://registry.bio2kg.org/resource/mp" }, { - "@id": "https://bioregistry.io/registry/mgnify.analysis" + "@id": "https://bioportal.bioontology.org/ontologies/MP" }, { - "@id": "https://bioregistry.io/registry/foaf" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp" }, { - "@id": "https://bioregistry.io/registry/ppr" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp" }, { - "@id": "https://bioregistry.io/registry/lncipedia" - }, + "@id": "http://aber-owl.net/ontology/MP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/dc" + "@value": "physiology" }, { - "@id": "https://bioregistry.io/registry/bioregistry.schema" + "@value": "phenotype" }, { - "@id": "https://bioregistry.io/registry/github.pull" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/fhir.implementation" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/smid" + "@value": "developmental biology" }, { - "@id": "https://bioregistry.io/registry/lcsh" + "@value": "mammalian" }, { - "@id": "https://bioregistry.io/registry/vega" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.informatics.jax.org/searches/MP_form.shtml" + }, + "https://bioregistry.io/schema/#0000005": "0005452", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mp.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/phenx" + "@id": "https://bioregistry.io/registry/chiro" }, { - "@id": "https://bioregistry.io/registry/ghr" - }, + "@id": "https://bioregistry.io/registry/scdo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4606-0597" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MP_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MP_0005452" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mp" + } + }, + { + "@id": "https://bioregistry.io/registry/umbbd.enzyme", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/pubchem.classification" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/flybrain.ndb" - }, + "@id": "https://bioregistry.io/registry/umbbd" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EAWAG Biocatalysis/Biodegradation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/emmo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID" }, { - "@id": "https://bioregistry.io/registry/odrl" + "@id": "https://registry.identifiers.org/registry/umbbd.enzyme" }, { - "@id": "https://bioregistry.io/registry/vann" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME" }, { - "@id": "https://bioregistry.io/registry/qudt" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://umbbd.ethz.ch/" + }, + "https://bioregistry.io/schema/#0000005": "e0333", + "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1", + "https://bioregistry.io/schema/#0000008": "^e\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "UM-BBD_enzymeID" + }, + "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=e0333" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "umbbd.enzyme" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010741", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/unpd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Universal Natural Products Database" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pkuxxj.pku.edu.cn/UNPD/" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "unpd" + } + }, + { + "@id": "https://orcid.org/0000-0002-0045-7698", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pierre-Alain Binz" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pierre-alain.binz@chuv.ch" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.orthology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/rrrc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rat Resource and Research Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cog.pathway" + "@value": "human" }, { - "@id": "https://bioregistry.io/registry/cog.category" + "@value": "research" }, { - "@id": "https://bioregistry.io/registry/ndex" + "@value": "pathogen" }, { - "@id": "https://bioregistry.io/registry/nucc.characteristic" + "@value": "infectious" }, { - "@id": "https://bioregistry.io/registry/cellosaurus.resource" + "@value": "hybrid" }, { - "@id": "https://bioregistry.io/registry/bioregistry.collection" + "@value": "embryonic stem cell" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.dataset" + "@value": "protocol" }, { - "@id": "https://bioregistry.io/registry/scr" + "@value": "database" }, { - "@id": "https://bioregistry.io/registry/inaturalist.place" + "@value": "genotyping" }, { - "@id": "https://bioregistry.io/registry/echinobase" + "@value": "germplasma" }, { - "@id": "https://bioregistry.io/registry/biro" + "@value": "rat" }, { - "@id": "https://bioregistry.io/registry/msigdb" + "@value": "disease" }, { - "@id": "https://bioregistry.io/registry/dsm4" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/vuid" + "@value": "drug" }, { - "@id": "https://bioregistry.io/registry/commoncoreontology" + "@value": "catalog" }, { - "@id": "https://bioregistry.io/registry/venom" + "@value": "animal" }, { - "@id": "https://bioregistry.io/registry/cba" + "@value": "nuclear" }, { - "@id": "https://bioregistry.io/registry/lbctr" + "@value": "cryopreserved" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.compound" + "@value": "molecular" }, { - "@id": "https://bioregistry.io/registry/fcsfree" + "@value": "mutant" }, { - "@id": "https://bioregistry.io/registry/icd10cm" + "@value": "gamete" }, { - "@id": "https://bioregistry.io/registry/nlx.dys" + "@value": "tissue" }, { - "@id": "https://bioregistry.io/registry/ecg" + "@value": "embryo" }, { - "@id": "https://bioregistry.io/registry/nddf" + "@value": "inbred" }, { - "@id": "https://bioregistry.io/registry/storedb.file" + "@value": "biomedical" }, { - "@id": "https://bioregistry.io/registry/gramene.reference" + "@value": "strain" }, { - "@id": "https://bioregistry.io/registry/nihhesc" + "@value": "ovarian" }, { - "@id": "https://bioregistry.io/registry/nlm" + "@value": "stem cell" }, { - "@id": "https://bioregistry.io/registry/frbr" + "@value": "reagent" }, { - "@id": "https://bioregistry.io/registry/ontie" + "@value": "cell line" }, { - "@id": "https://bioregistry.io/registry/c4o" - }, + "@value": "rat model" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.rrrc.us/" + }, + "https://bioregistry.io/schema/#0000005": "961", + "https://bioregistry.io/schema/#0000006": "https://www.rrrc.us/Strain/?x=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.rrrc.us/Strain/?x=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.rrrc.us/Strain/?x=961" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rrrc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/uniprot.isoform", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/wbphenotype", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ontology about C. elegans and other nematode phenotypes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/c-elegans-phenotype-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "C. elegans phenotype" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/goche" + "@id": "https://registry.bio2kg.org/resource/wbphenotype" }, { - "@id": "https://bioregistry.io/registry/mesh.vocab" + "@id": "https://fairsharing.org/FAIRsharing.agvc7y" }, { - "@id": "https://bioregistry.io/registry/datacommons" + "@id": "http://www.ontobee.org/ontology/WBPhenotype" }, { - "@id": "https://bioregistry.io/registry/rfc" + "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE" }, { - "@id": "https://bioregistry.io/registry/kupo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype" }, { - "@id": "https://bioregistry.io/registry/t4fs" + "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype" }, { - "@id": "https://bioregistry.io/registry/edam.operation" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype" }, { - "@id": "https://bioregistry.io/registry/prov" + "@id": "https://www.obofoundry.org/ontology/wbphenotype" }, { - "@id": "https://bioregistry.io/registry/matrixdb" - }, + "@id": "http://aber-owl.net/ontology/WBPHENOTYPE" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/pfam.clan" + "@value": "phenotype" }, { - "@id": "https://bioregistry.io/registry/beiresources" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/dcat" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/epcc" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/lpt" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/gbif" - }, + "@value": "worm" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/c-elegans-phenotype-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000983", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBPhenotype_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/wbphenotype.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9076-6015" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "WBPhenotype" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBPhenotype_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/WBPhenotype_0000983" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wbphenotype" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3590", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/fbtc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The cell line vocabulary inside FlyBase", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/kegg.rclass" + "@id": "https://bioregistry.io/registry/flybase" }, { - "@id": "https://bioregistry.io/registry/seinet" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Flybase Cell Line" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://flybase.org" + }, + "https://bioregistry.io/schema/#0000005": "0000190", + "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/FBtc$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "FlyBase_Cell_line" + }, + "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/FBtc", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://flybase.org/reports/FBtc0000190" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fbtc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hgnc.genefamily", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/co_346", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "oct 2016", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mungbean ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/rebec" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_346" }, { - "@id": "https://bioregistry.io/registry/dolce" + "@id": "https://cropontology.org/ontology/CO_346" }, { - "@id": "https://bioregistry.io/registry/gainesville.core" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346" }, { - "@id": "https://bioregistry.io/registry/brenda.ligandgroup" - }, + "@id": "https://fairsharing.org/FAIRsharing.fgd5gq" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/reo" + "@value": "agriculture" }, { - "@id": "https://bioregistry.io/registry/loinc" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/kestrelo" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_346/Mungbean" + }, + "https://bioregistry.io/schema/#0000005": "0000199", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_346:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_346/Mungbean/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N3d1b2d44321449298ccf2afdf5ddcbea" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_346:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_346:0000199" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_346" + } + }, + { + "@id": "_:N3d1b2d44321449298ccf2afdf5ddcbea", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/gtr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genetic Testing Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/gtr/" + }, + "https://bioregistry.io/schema/#0000005": "AN0097748", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/gtr/conditions/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mondo" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "medgen.gtr" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/gtr/conditions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/gtr/conditions/AN0097748" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gtr" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ERO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/ecso", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/DataONEorg/sem-prov-ontologies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Ecosystem Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/bioregistry" + "@id": "https://bioportal.bioontology.org/ontologies/ECSO" }, { - "@id": "https://bioregistry.io/registry/violinnet" + "@id": "https://fairsharing.org/FAIRsharing.a4ww64" }, { - "@id": "https://bioregistry.io/registry/xml" - }, + "@id": "http://aber-owl.net/ontology/ECSO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/dso" + "@value": "earth science" }, { - "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" + "@value": "ecosystem science" }, { - "@id": "https://bioregistry.io/registry/go.rule" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioportal.bioontology.org/ontologies/ECSO" + }, + "https://bioregistry.io/schema/#0000005": "00000532", + "https://bioregistry.io/schema/#0000006": "http://purl.dataone.org/odo/ECSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/DataONEorg/sem-prov-ontologies/run4/observation/d1-ECSO.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0381-3766" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.dataone.org/odo/ECSO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.dataone.org/odo/ECSO_00000532" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecso" + } + }, + { + "@id": "https://registry.identifiers.org/registry/csa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-4299-7561", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Gloriam" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "david.gloriam@sund.ku.dk" + } + }, + { + "@id": "http://edamontology.org/data_2666", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://aber-owl.net/ontology/FYPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/FB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/bibo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Bibliographic Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "bibliometrics" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bibliontology.com/" + }, + "https://bioregistry.io/schema/#0000005": "authorList", + "https://bioregistry.io/schema/#0000006": "http://purl.org/ontology/bibo/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N717444d80a984999b81a04f5f075fef5" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/ontology/bibo/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/ontology/bibo/authorList" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bibo" + } + }, + { + "@id": "_:N717444d80a984999b81a04f5f075fef5", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Frédérick Giasson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "fred@fgiasson.com" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ECOCORE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/unii", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Unique Ingredient Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/fairsharing.organization" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii" }, { - "@id": "https://bioregistry.io/registry/eolife" + "@id": "https://semanticscience.org/resource/CHEMINF_000563" }, { - "@id": "https://bioregistry.io/registry/omop" + "@id": "https://registry.identifiers.org/registry/unii" }, { - "@id": "https://bioregistry.io/registry/kcris" + "@id": "http://www.wikidata.org/entity/P652" }, { - "@id": "https://bioregistry.io/registry/cosmic.cell" - }, - { - "@id": "https://bioregistry.io/registry/sty" - }, - { - "@id": "https://bioregistry.io/registry/sfam" - }, - { - "@id": "https://bioregistry.io/registry/inaturalist.taxon" - }, - { - "@id": "https://bioregistry.io/registry/qb" - }, - { - "@id": "https://bioregistry.io/registry/unpd" - }, - { - "@id": "https://bioregistry.io/registry/citexplore" - }, - { - "@id": "https://bioregistry.io/registry/cmecs" - }, - { - "@id": "https://bioregistry.io/registry/repec" - }, - { - "@id": "https://bioregistry.io/registry/icldb" - }, - { - "@id": "https://bioregistry.io/registry/biorxiv" - }, - { - "@id": "https://bioregistry.io/registry/empiar" - }, - { - "@id": "https://bioregistry.io/registry/scop.sccs" - }, - { - "@id": "https://bioregistry.io/registry/gsfa" - }, - { - "@id": "https://bioregistry.io/registry/gtr" - }, - { - "@id": "https://bioregistry.io/registry/chemrof" - }, - { - "@id": "https://bioregistry.io/registry/publons.researcher" - }, - { - "@id": "https://bioregistry.io/registry/doap" - }, - { - "@id": "https://bioregistry.io/registry/imdrf" - }, - { - "@id": "https://bioregistry.io/registry/rdfs" - }, - { - "@id": "https://bioregistry.io/registry/fabio" - }, - { - "@id": "https://bioregistry.io/registry/cog" - }, - { - "@id": "https://bioregistry.io/registry/gnomad" - }, - { - "@id": "https://bioregistry.io/registry/puro" - }, - { - "@id": "https://bioregistry.io/registry/webelements" - }, - { - "@id": "https://bioregistry.io/registry/xmetdb" - }, - { - "@id": "https://bioregistry.io/registry/chembl.cell" - }, - { - "@id": "https://bioregistry.io/registry/ucsc" - }, - { - "@id": "https://bioregistry.io/registry/diseaseclass" - }, - { - "@id": "https://bioregistry.io/registry/receptome.family" - }, - { - "@id": "https://bioregistry.io/registry/birnlex" - }, - { - "@id": "https://bioregistry.io/registry/bibo" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/UNII" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://precision.fda.gov/uniisearch" + }, + "https://bioregistry.io/schema/#0000005": "3G6A5W338E", + "https://bioregistry.io/schema/#0000006": "https://precision.fda.gov/uniisearch/srs/unii/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://precision.fda.gov/uniisearch/srs/unii/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://precision.fda.gov/uniisearch/srs/unii/3G6A5W338E" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "unii" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mmrrc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/omop", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Observational Medical Outcomes Partnership" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ohdsi.org/data-standardization/the-common-data-model/" + }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://athena.ohdsi.org/search-terms/terms/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "OMOP" + }, + "https://bioregistry.io/schema/#0000024": "https://athena.ohdsi.org/search-terms/terms/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://athena.ohdsi.org/search-terms/terms/1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "omop" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010544", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dg.5b0d", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.63520c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7e9cff", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/XCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/bridgedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BridgeDb Vocabulary" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bridgedb.org" + }, + "https://bioregistry.io/schema/#0000005": "hasPrimaryUriPattern", + "https://bioregistry.io/schema/#0000006": "http://vocabularies.bridgedb.org/ops#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://vocabularies.bridgedb.org/ops#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bridgedb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/GENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/tair.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/ONS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ecocore", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EcologicalSemantics/ecocore" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "An ontology of core ecological entities" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/hoelzel" + "@id": "http://aber-owl.net/ontology/ECOCORE" }, { - "@id": "https://bioregistry.io/registry/tgn" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE" }, { - "@id": "https://bioregistry.io/registry/owlstar" + "@id": "https://www.obofoundry.org/ontology/ecocore" }, { - "@id": "https://bioregistry.io/registry/conference" + "@id": "http://www.ontobee.org/ontology/ECOCORE" }, { - "@id": "https://bioregistry.io/registry/ppdb" + "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE" }, { - "@id": "https://bioregistry.io/registry/kegg.dgroup" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/adms" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/illumina.probe" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/EcologicalSemantics/ecocore" + }, + "https://bioregistry.io/schema/#0000005": "00000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECOCORE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ecocore.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/snornabase" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/registry/eurofir" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/registry/semapv" + "@id": "https://bioregistry.io/registry/pco" }, { - "@id": "https://bioregistry.io/registry/goeco" + "@id": "https://bioregistry.io/registry/iao" }, { - "@id": "https://bioregistry.io/registry/itmctr" + "@id": "https://bioregistry.io/registry/envo" }, { - "@id": "https://bioregistry.io/registry/n2t" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioregistry.io/registry/dbvar.variant" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://bioregistry.io/registry/biolegend" + "@id": "https://bioregistry.io/registry/po" }, { - "@id": "https://bioregistry.io/registry/confident.series" + "@id": "https://bioregistry.io/registry/pato" }, { - "@id": "https://bioregistry.io/registry/4dn.replicate" - }, + "@id": "https://bioregistry.io/registry/bfo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4366-3088" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECOCORE_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ECOCORE_00000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecocore" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://orcid.org/0000-0002-6772-2775", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dylan McGagh" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dylan.mcgagh@magd.ox.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/molbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/registry/antweb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AntWeb" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mba" + "@id": "http://www.wikidata.org/entity/P5299" }, { - "@id": "https://bioregistry.io/registry/skosxl" + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB" }, { - "@id": "https://bioregistry.io/registry/hog" + "@id": "https://registry.bio2kg.org/resource/antweb" }, { - "@id": "https://bioregistry.io/registry/uniprot.location" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb" }, { - "@id": "https://bioregistry.io/registry/fbrf" + "@id": "https://fairsharing.org/FAIRsharing.yk38tw" }, { - "@id": "https://bioregistry.io/registry/neuronames" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb" }, { - "@id": "https://bioregistry.io/registry/vandf" - }, + "@id": "https://registry.identifiers.org/registry/antweb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/foodb.food" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/ssbd.dataset" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/omim.ps" - }, + "@value": "anatomy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.antweb.org/" + }, + "https://bioregistry.io/schema/#0000005": "casent0106247", + "https://bioregistry.io/schema/#0000006": "http://www.antweb.org/specimen.do?name=$1", + "https://bioregistry.io/schema/#0000008": "^casent\\d+(\\-D\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.antweb.org/specimen.do?name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.antweb.org/specimen.do?name=casent0106247" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "antweb" + } + }, + { + "@id": "https://bioregistry.io/registry/repec", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Peruvian Clinical Trial Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ensayosclinicos-repec.ins.gob.pe/en/" + }, + "https://bioregistry.io/schema/#0000005": "046-19", + "https://bioregistry.io/schema/#0000006": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=046-19" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "repec" + } + }, + { + "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/wormbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wormbase Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/siren" + "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase" }, { - "@id": "https://bioregistry.io/registry/dhba" + "@id": "http://www.wikidata.org/entity/P3860" }, { - "@id": "https://bioregistry.io/registry/decipher" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.cell" + "@id": "https://fairsharing.org/FAIRsharing.zx1td8" }, { - "@id": "https://bioregistry.io/registry/idoden" + "@id": "https://www.re3data.org/repository/r3d100010424" }, { - "@id": "https://bioregistry.io/registry/hl7.v2codesystem" + "@id": "https://registry.bio2kg.org/resource/wormbase" }, { - "@id": "https://bioregistry.io/registry/depmap" + "@id": "https://www.uniprot.org/database/DB-0110" }, { - "@id": "https://bioregistry.io/registry/drugbank.category" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab" }, { - "@id": "https://bioregistry.io/registry/iceberg.cime" + "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF" }, { - "@id": "https://bioregistry.io/registry/prefixcommons" + "@id": "http://edamontology.org/data_1805" }, { - "@id": "https://bioregistry.io/registry/ietf.language" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb" }, { - "@id": "https://bioregistry.io/registry/hc.trial" + "@id": "https://registry.identifiers.org/registry/wb" }, { - "@id": "https://bioregistry.io/registry/merops.clan" - }, + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/jrct" + "@value": "orthology assignment" }, { - "@id": "https://bioregistry.io/registry/ymdb" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/uniprot.var" + "@value": "database" }, { - "@id": "https://bioregistry.io/registry/xuo" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/jax" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/stn" + "@value": "ortholog" }, { - "@id": "https://bioregistry.io/registry/wikidata.property" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/pathbank" + "@value": "gene function" }, { - "@id": "https://bioregistry.io/registry/skos" + "@value": "gene prediction" }, { - "@id": "https://bioregistry.io/registry/vsmo" + "@value": "catalog" }, { - "@id": "https://bioregistry.io/registry/anzctr" + "@value": "gene expression" }, { - "@id": "https://bioregistry.io/registry/void" + "@value": "blast" }, { - "@id": "https://bioregistry.io/registry/google.scholar" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/storedb.study" + "@value": "c elegans" }, { - "@id": "https://bioregistry.io/registry/ecacc" + "@value": "genomic sequence" }, { - "@id": "https://bioregistry.io/registry/gemet" + "@value": "gene mapping" }, { - "@id": "https://bioregistry.io/registry/dctypes" + "@value": "geneotype" }, { - "@id": "https://bioregistry.io/registry/nkos" + "@value": "transposon family" }, { - "@id": "https://bioregistry.io/registry/scop.sid" + "@value": "faseb list" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.tissue" + "@value": "phenotype" }, { - "@id": "https://bioregistry.io/registry/evm" + "@value": "wormmart" }, { - "@id": "https://bioregistry.io/registry/conso" - }, + "@value": "roundworm" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.wormbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "WBGene00000001", + "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/get?name=$1", + "https://bioregistry.io/schema/#0000008": "^WB[A-Z][a-z]+\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/ukprn" + "@value": "WB_REF" }, { - "@id": "https://bioregistry.io/registry/oban" + "@value": "wormbase" }, { - "@id": "https://bioregistry.io/registry/come" - }, + "@value": "wb" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/get?name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.wormbase.org/get?name=WBGene00000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wormbase" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/biogrid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/geno", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/monarch-initiative/GENO-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/grassbase" + "@id": "http://aber-owl.net/ontology/GENO" }, { - "@id": "https://bioregistry.io/registry/icd9" + "@id": "https://www.obofoundry.org/ontology/geno" }, { - "@id": "https://bioregistry.io/registry/scop" + "@id": "https://bioportal.bioontology.org/ontologies/GENO" }, { - "@id": "https://bioregistry.io/registry/rtecs" + "@id": "http://www.ontobee.org/ontology/GENO" }, { - "@id": "https://bioregistry.io/registry/gmelin" + "@id": "https://fairsharing.org/FAIRsharing.kpbna7" }, { - "@id": "https://bioregistry.io/registry/uniprot.resource" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENO" }, { - "@id": "https://bioregistry.io/registry/bioschemas" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/probesanddrugs" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/npass" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/panorama" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/monarch-initiative/GENO-ontology/" + }, + "https://bioregistry.io/schema/#0000005": "0000632", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GENO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/geno.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1048-5019" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GENO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GENO_0000632" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "geno" + } + }, + { + "@id": "https://registry.identifiers.org/registry/prosite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/homd.seq", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HOMD Sequence Metainformation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cordis.article" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq" }, { - "@id": "https://bioregistry.io/registry/salk" + "@id": "https://registry.bio2kg.org/resource/homd.seq" }, { - "@id": "https://bioregistry.io/registry/cp" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ" }, { - "@id": "https://bioregistry.io/registry/pfr" - }, + "@id": "https://registry.identifiers.org/registry/homd.seq" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/graingenes.symbol" + "@value": "microbial" }, { - "@id": "https://bioregistry.io/registry/graingenes.reference" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.homd.org/index.php" + }, + "https://bioregistry.io/schema/#0000005": "SEQF1003", + "https://bioregistry.io/schema/#0000006": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1", + "https://bioregistry.io/schema/#0000008": "^SEQF\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=SEQF1003" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "homd.seq" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4gm9gt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2y1KMt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-7440-0467", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lucas Leclere" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "lucas.leclere@obs-vlfr.fr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/edam", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/smiles" + "@id": "https://bioregistry.io/registry/edam.data" }, { - "@id": "https://bioregistry.io/registry/drks" + "@id": "https://bioregistry.io/registry/edam.operation" }, { - "@id": "https://bioregistry.io/registry/fivestars" + "@id": "https://bioregistry.io/registry/edam.format" }, { - "@id": "https://bioregistry.io/registry/rdf" - }, + "@id": "https://bioregistry.io/registry/edam.topic" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/edamontology/edamontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EDAM Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/bs" + "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM" }, { - "@id": "https://bioregistry.io/registry/gfo" + "@id": "https://fairsharing.org/FAIRsharing.a6r7zs" }, { - "@id": "https://bioregistry.io/registry/pwo" + "@id": "http://aber-owl.net/ontology/EDAM" }, { - "@id": "https://bioregistry.io/registry/eaglei" + "@id": "https://registry.identifiers.org/registry/edam" }, { - "@id": "https://bioregistry.io/registry/ecolexicon" + "@id": "https://bioportal.bioontology.org/ontologies/EDAM" }, { - "@id": "https://bioregistry.io/registry/drugbank.salt" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam" }, { - "@id": "https://bioregistry.io/registry/radlex" + "@id": "https://registry.bio2kg.org/resource/edam" }, { - "@id": "https://bioregistry.io/registry/gorel" + "@id": "http://agroportal.lirmm.fr/ontologies/EDAM" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.cell" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam" }, { - "@id": "https://bioregistry.io/registry/drugcentral" - }, + "@id": "http://www.ontobee.org/ontology/EDAM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/dsmz" + "@value": "subject agnostic" }, { - "@id": "https://bioregistry.io/registry/bartoc" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/seo" + "@value": "bioinformatics" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.dataset" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/rnamod" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://edamontology.org" + }, + "https://bioregistry.io/schema/#0000005": "data_1664", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1", + "https://bioregistry.io/schema/#0000008": "^(data|topic|operation|format)\\_\\d{4}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1509-4981" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/data_1664" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "edam" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0041", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://orcid.org/0000-0003-0728-781X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "William Hayes" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "support@bel.bio" + } + }, + { + "@id": "https://bartoc.org/en/node/18951", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/scoro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/scoro" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Scholarly Contributions and Roles Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.c86b48" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/scoro" + }, + "https://bioregistry.io/schema/#0000005": "IntellectualContribution", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/scoro/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/scoro/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/scoro/IntellectualContribution" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scoro" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FB-BT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/enm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "eNanoMapper ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/rcb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm" }, { - "@id": "https://bioregistry.io/registry/nrfc" + "@id": "http://aber-owl.net/ontology/ENM" }, { - "@id": "https://bioregistry.io/registry/ucum" + "@id": "https://bioportal.bioontology.org/ontologies/ENM" }, { - "@id": "https://bioregistry.io/registry/chictr" - }, + "@id": "https://fairsharing.org/FAIRsharing.2gpf81" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cohd" + "@value": "health science" }, { - "@id": "https://bioregistry.io/registry/hba" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.enanomapper.net/" + }, + "https://bioregistry.io/schema/#0000005": "8000221", + "https://bioregistry.io/schema/#0000006": "http://purl.enanomapper.org/onto/ENM_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://enanomapper.github.io/ontologies/releases/10.0/enanomapper.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7542-0286" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.enanomapper.org/onto/ENM_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.enanomapper.org/onto/ENM_8000221" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "enm" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/hl7", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "HL7 External Code Systems are stored within the greater OID system" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/agrovoc" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206" }, { - "@id": "https://bioregistry.io/registry/easychair.cfp" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59" }, { - "@id": "https://bioregistry.io/registry/icdo" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339" }, { - "@id": "https://bioregistry.io/registry/slctr" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3" }, { - "@id": "https://bioregistry.io/registry/cdt" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229" }, { - "@id": "https://bioregistry.io/registry/wgs84" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280" }, { - "@id": "https://bioregistry.io/registry/mmsl" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120" }, { - "@id": "https://bioregistry.io/registry/ximbio" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347" }, { - "@id": "https://bioregistry.io/registry/idpo" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128" }, { - "@id": "https://bioregistry.io/registry/dermo" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126" }, { - "@id": "https://bioregistry.io/registry/faldo" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42" }, { - "@id": "https://bioregistry.io/registry/nucc.taxonomy" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177" }, { - "@id": "https://bioregistry.io/registry/kclb" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86" }, { - "@id": "https://bioregistry.io/registry/ccle" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77" }, { - "@id": "https://bioregistry.io/registry/te" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90" }, { - "@id": "https://bioregistry.io/registry/edam.data" + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107" }, { - "@id": "https://bioregistry.io/registry/codelink" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283" }, { - "@id": "https://bioregistry.io/registry/ncbi.genome" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209" }, { - "@id": "https://bioregistry.io/registry/doco" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173" }, { - "@id": "https://bioregistry.io/registry/biozil" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69" }, { - "@id": "https://bioregistry.io/registry/easychair.topic" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284" }, { - "@id": "https://bioregistry.io/registry/bmrb.restraint" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73" }, { - "@id": "https://bioregistry.io/registry/skip" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1" }, { - "@id": "https://bioregistry.io/registry/ucas" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319" }, { - "@id": "https://bioregistry.io/registry/drugbank.reaction" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4" }, { - "@id": "https://bioregistry.io/registry/edam.format" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281" }, { - "@id": "https://bioregistry.io/registry/github.issue" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163" }, { - "@id": "https://bioregistry.io/registry/xsd" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8" }, { - "@id": "https://bioregistry.io/registry/ncbigi" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340" }, { - "@id": "https://bioregistry.io/registry/dmba" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116" }, { - "@id": "https://bioregistry.io/registry/inn" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119" }, { - "@id": "https://bioregistry.io/registry/iro" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2" }, { - "@id": "https://bioregistry.io/registry/icd11" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88" }, { - "@id": "https://bioregistry.io/registry/uniprot.disease" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61" }, { - "@id": "https://bioregistry.io/registry/scoro" + "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4" }, { - "@id": "https://bioregistry.io/registry/enzo" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175" }, { - "@id": "https://bioregistry.io/registry/pubchem.cell" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62" }, { - "@id": "https://bioregistry.io/registry/owl" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43" }, { - "@id": "https://bioregistry.io/registry/ndfrt" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344" }, { - "@id": "https://bioregistry.io/registry/bido" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96" }, { - "@id": "https://bioregistry.io/registry/bpdb" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205" }, { - "@id": "https://bioregistry.io/registry/iceberg.ime" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254" }, { - "@id": "https://bioregistry.io/registry/pactr" + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105" }, { - "@id": "https://bioregistry.io/registry/namerxn" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208" }, { - "@id": "https://bioregistry.io/registry/mirte" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174" }, { - "@id": "https://bioregistry.io/registry/swrl" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HL7 External Code Systems" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "http://www.oid-info.com/get/2.16.840.1.113883.6" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "2.16.840.1.113883.6.88" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "http://oid-info.com/get/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N26c0c05c822d47a285ae363ae8b52b83" + } + }, + { + "@id": "_:N26c0c05c822d47a285ae363ae8b52b83", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "W. Ted Klein" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ted@tklein.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cgsc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/QUDT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dg.6vts", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/imex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pmdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/XPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/rnao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0003-4849-628X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jean-Luc Jannink" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://registry.identifiers.org/registry/icdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DPV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-1005-8383", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pankaj Jaiswal" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jaiswalp@science.oregonstate.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ceph", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An anatomical and developmental ontology for cephalopods", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/cephalopod-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cephalopod Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH" }, { - "@id": "https://bioregistry.io/registry/nlx.anat" + "@id": "https://bioportal.bioontology.org/ontologies/CEPH" }, { - "@id": "https://bioregistry.io/registry/icepo" + "@id": "https://www.obofoundry.org/ontology/ceph" }, { - "@id": "https://bioregistry.io/registry/ubprop" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph" }, { - "@id": "https://bioregistry.io/registry/tkg" + "@id": "http://www.ontobee.org/ontology/CEPH" }, { - "@id": "https://bioregistry.io/registry/schema" + "@id": "http://aber-owl.net/ontology/CEPH" }, { - "@id": "https://bioregistry.io/registry/pseudogene" + "@id": "https://fairsharing.org/FAIRsharing.p58bm4" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/iso.3166" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/goldbook" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/dto" + "@value": "zoology" }, { - "@id": "https://bioregistry.io/registry/sael" + "@value": "fisheries science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/cephalopod-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000109", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CEPH_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ceph.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CEPH_", + "https://bioregistry.io/schema/#0000029": { + "@value": "ceph" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ohbpNw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hpscreg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xwqg9h", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/drugbank", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/drugbank.salt" }, { - "@id": "https://bioregistry.io/registry/drugbank.metabolite" + "@id": "https://bioregistry.io/registry/drugbank.category" }, { - "@id": "https://bioregistry.io/registry/vac" + "@id": "https://bioregistry.io/registry/drugbank.bioentity" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DrugBank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/drugbank" }, { - "@id": "https://bioregistry.io/registry/abcam" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank" }, { - "@id": "https://bioregistry.io/registry/span" + "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank" }, { - "@id": "https://bioregistry.io/registry/hc.npn" + "@id": "https://fairsharing.org/FAIRsharing.353yat" }, { - "@id": "https://bioregistry.io/registry/rdo" + "@id": "https://www.uniprot.org/database/DB-0019" }, { - "@id": "https://bioregistry.io/registry/debio" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank" }, { - "@id": "https://bioregistry.io/registry/peff" + "@id": "https://www.re3data.org/repository/r3d100010544" }, { - "@id": "https://bioregistry.io/registry/cnrs" + "@id": "http://www.wikidata.org/entity/P715" }, { - "@id": "https://bioregistry.io/registry/langual" + "@id": "http://edamontology.org/data_2326" }, { - "@id": "https://bioregistry.io/registry/icf" + "@id": "https://registry.identifiers.org/registry/drugbank" }, { - "@id": "https://bioregistry.io/registry/rpcec" + "@id": "https://semanticscience.org/resource/CHEMINF_000406" }, { - "@id": "https://bioregistry.io/registry/biogrid.interaction" + "@id": "https://bartoc.org/en/node/18377" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/isrctn" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/irct" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/sweetrealm" + "@value": "drug" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.drugbank.ca" + }, + "https://bioregistry.io/schema/#0000005": "DB14938", + "https://bioregistry.io/schema/#0000006": "http://www.drugbank.ca/drugs/$1", + "https://bioregistry.io/schema/#0000008": "^DB\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3207-2434" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "DrugBank" }, { - "@id": "https://bioregistry.io/registry/pesticides" + "@value": "DRUGBANK_ID" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.drugbank.ca/drugs/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.drugbank.ca/drugs/DB14938" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drugbank" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vssch2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HCPCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro" }, { - "@id": "https://bioregistry.io/registry/jcrb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE" }, { - "@id": "https://bioregistry.io/registry/dbo" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD" }, { - "@id": "https://bioregistry.io/registry/eol" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB" }, { - "@id": "https://bioregistry.io/registry/ftt" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder" }, { - "@id": "https://bioregistry.io/registry/deo" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL" }, { - "@id": "https://bioregistry.io/registry/fungorum" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase" }, { - "@id": "https://bioregistry.io/registry/go.gpi" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD" }, { - "@id": "https://bioregistry.io/registry/tctr" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase" }, { - "@id": "https://bioregistry.io/registry/lter" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS" }, { - "@id": "https://bioregistry.io/registry/sigmaaldrich" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt" }, { - "@id": "https://bioregistry.io/registry/ac" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR" }, { - "@id": "https://bioregistry.io/registry/brenda.ligand" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI" }, { - "@id": "https://bioregistry.io/registry/cvx" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR" }, { - "@id": "https://bioregistry.io/registry/bel" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene" }, { - "@id": "https://bioregistry.io/registry/th" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC" }, { - "@id": "https://bioregistry.io/registry/worldavatar.compchem" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM" }, { - "@id": "https://bioregistry.io/registry/thermofisher" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD" }, { - "@id": "https://bioregistry.io/registry/geonames" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum" }, { - "@id": "https://bioregistry.io/registry/ecn" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC" }, { - "@id": "https://bioregistry.io/registry/scopus" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB" }, { - "@id": "https://bioregistry.io/registry/oncotree" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC" }, { - "@id": "https://bioregistry.io/registry/ssbd.project" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE" }, { - "@id": "https://bioregistry.io/registry/phrr" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList" }, { - "@id": "https://bioregistry.io/registry/ecmdb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP" }, { - "@id": "https://bioregistry.io/registry/miaa" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList" }, { - "@id": "https://bioregistry.io/registry/nextprot.family" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA" }, { - "@id": "https://bioregistry.io/registry/cellopub" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM" }, { - "@id": "https://bioregistry.io/registry/snctp" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE" }, { - "@id": "https://bioregistry.io/registry/vsdb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR" }, { - "@id": "https://bioregistry.io/registry/mediadive.solution" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD" }, { - "@id": "https://bioregistry.io/registry/tfclass" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb" }, { - "@id": "https://bioregistry.io/registry/unirule" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase" }, { - "@id": "https://bioregistry.io/registry/cito" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM" }, { - "@id": "https://bioregistry.io/registry/wikipathways.vocab" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL" }, { - "@id": "https://bioregistry.io/registry/pspub" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI" }, { - "@id": "https://bioregistry.io/registry/icd9cm" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST" }, { - "@id": "https://bioregistry.io/registry/emolecules" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase" }, { - "@id": "https://bioregistry.io/registry/fairsharing.user" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Charles Tapley Hoyt" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cthoyt@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/nlx.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXCELL conatins cell types with a focus on neuron types.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN" + }, { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Cell Types" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport" + }, { - "@value": "cells" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB" }, { - "@value": "cell lines" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN" }, { - "@value": "cell types" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN" }, { - "@value": "neuroscience" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "https://bioregistry.io/schema/#0000005": "91005", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Center for Biotechnology Information Registry" }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXCELL" + "https://bioregistry.io/schema/#0000005": { + "@value": "ECOCYC" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_91005" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N90875648f8524cd48ed83e7dfcff07f3" + } + }, + { + "@id": "_:N90875648f8524cd48ed83e7dfcff07f3", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GenBank Support" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.cell" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gb-admin@ncbi.nlm.nih.gov" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto", + "@id": "http://www.ontobee.org/ontology/PLANP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/mgnify.proj", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.", + "@id": "http://agroportal.lirmm.fr/ontologies/PPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MGnify Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj" - }, - { - "@id": "https://registry.identifiers.org/registry/mgnify.proj" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/metagenomics" - }, - "https://bioregistry.io/schema/#0000005": "ERP004492", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/projects/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/projects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/metagenomics/projects/ERP004492" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mgnify.proj" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/nlx.chem", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXCHEM covers chemicals. Most classes are also in ChEBI.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Chemical" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "chemistry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "https://bioregistry.io/schema/#0000005": "90801", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXCHEM" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_90801" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.chem" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://www.ontobee.org/ontology/ICO", + "@id": "http://edamontology.org/data_2659", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/schema/#0000023", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "An alternative or synonymous prefix" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, + "@id": "https://orcid.org/0000-0003-3947-488X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has alternative prefix" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - }, - "http://www.w3.org/2000/01/rdf-schema#subPropertyOf": { - "@id": "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" + "@value": "Sebastien Moretti" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": { - "@id": "http://identifiers.org/idot/alternatePrefix" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sebastien.moretti@sib.swiss" } }, { - "@id": "https://bioregistry.io/registry/dcat", + "@id": "http://aber-owl.net/ontology/MCRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ato", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web", + "http://purl.org/dc/terms/description": "Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/w3c/dxwg/" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Data Catalog" + "@value": "Amphibian taxonomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/DCAT" + "@id": "http://aber-owl.net/ontology/ATO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcat" + "@id": "https://fairsharing.org/FAIRsharing.ayjdsm" }, { - "@id": "https://fairsharing.org/FAIRsharing.h4j3qm" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATO" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat" + "@id": "https://www.obofoundry.org/ontology/ato" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DCAT" + "@id": "https://bioportal.bioontology.org/ontologies/ATO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "data management" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" }, { - "@value": "subject agnostic" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/ns/dcat" + "@id": "http://www.amphibanat.org" }, - "https://bioregistry.io/schema/#0000005": "Dataset", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/dcat#$1", + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ATO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/DCAT/2/dcat.owl" + "@id": "http://aber-owl.net/media/ontologies/ATO/2/ato.obo" }, - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9052-2854" - }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/dcat#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/dcat#Dataset" + "@id": "https://orcid.org/0000-0002-1810-9886" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ATO_", "https://bioregistry.io/schema/#0000029": { - "@value": "dcat" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/wb.rnai", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/myco.marinum", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "ato" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data", + "@id": "https://www.re3data.org/repository/r3d100012429", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/astd", + "@id": "https://registry.bio2kg.org/resource/bionumbers", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.nj16g", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1928", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/merops.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/drsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cellrepo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0001-8175-045X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Marcin Pawel Joachimiak" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "MJoachimiak@lbl.gov" } }, { - "@id": "https://bioregistry.io/registry/cido", + "@id": "https://bioregistry.io/registry/nbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.", + "http://purl.org/dc/terms/description": "An ontology of human and animal behaviours and behavioural phenotypes", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/cido-ontology/cido" + "@id": "https://github.com/obo-behavior/behavior-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Coronavirus Infectious Disease Ontology" + "@value": "Neuro Behavior Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/CIDO" + "@id": "https://www.obofoundry.org/ontology/nbo" }, { - "@id": "https://fairsharing.org/FAIRsharing.aVmpKl" + "@id": "http://aber-owl.net/ontology/NBO" }, { - "@id": "http://aber-owl.net/ontology/CIDO" + "@id": "https://fairsharing.org/FAIRsharing.pktgc6" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido" + "@id": "https://bioportal.bioontology.org/ontologies/NBO" }, { - "@id": "https://www.obofoundry.org/ontology/cido" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CIDO" + "@id": "https://bioregistry.io/metaregistry/biocontext/NBO" + }, + { + "@id": "http://www.ontobee.org/ontology/NBO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "bioinformatics" - }, - { - "@value": "drug repositioning" - }, - { - "@value": "obo" + "@value": "social and behavioural science" }, { - "@value": "virology" + "@value": "systemic neuroscience" }, { "@value": "ontology" }, { - "@value": "drug discovery" - }, - { - "@value": "epidemiology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/cido-ontology/cido" + "@id": "https://github.com/obo-behavior/behavior-ontology/" }, - "https://bioregistry.io/schema/#0000005": "0000005", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CIDO_$1", + "https://bioregistry.io/schema/#0000005": "0000564", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NBO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/CIDO-ontology/cido/raw/master/cido.owl" + "@id": "http://purl.obolibrary.org/obo/nbo.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/scdo" + }, + { + "@id": "https://bioregistry.io/registry/maxo" + }, + { + "@id": "https://bioregistry.io/registry/pcl" + }, + { + "@id": "https://bioregistry.io/registry/ecto" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "@id": "https://orcid.org/0000-0002-2061-091X" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CIDO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NBO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CIDO_0000005" + "@id": "http://purl.obolibrary.org/obo/NBO_0000564" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cido" + "@value": "nbo" } }, { - "@id": "https://bioregistry.io/registry/ecyano.experiment", + "@id": "https://bioregistry.io/registry/sabiork.ec", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SABIO-RK EC Record" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ecyano" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.identifiers.org/registry/sabiork.ec" + }, + { + "@id": "https://registry.bio2kg.org/resource/sabiork.ec" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "E-cyanobacterium Experimental Data" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/ecyano.experiment" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "reaction" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.e-cyanobacterium.org/experiments-repository/" + "@id": "http://sabiork.h-its.org/" + }, + "https://bioregistry.io/schema/#0000005": "2.7.1.1", + "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/newSearch?q=ecnumber:$1", + "https://bioregistry.io/schema/#0000008": "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/eccode" }, - "https://bioregistry.io/schema/#0000005": "18", - "https://bioregistry.io/schema/#0000006": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=", + "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/newSearch?q=ecnumber:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=18" + "@id": "http://sabiork.h-its.org/newSearch?q=ecnumber:2.7.1.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecyano.experiment" + "@value": "sabiork.ec" } }, { - "@id": "http://aber-owl.net/ontology/GECKO", + "@id": "https://bioregistry.io/metaregistry/biocontext/MAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/hoso", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HOSO is an ontology of informational entities and processes related to healthcare organizations and services.", + "@id": "http://edamontology.org/data_2380", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenLHS/HOSO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Healthcare Organizations and Services Ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://openlhs.github.io/HOSO/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3336-2476" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hoso" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/skos", + "@id": "https://registry.bio2kg.org/resource/nucleardb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010283", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/sasbdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web", + "http://purl.org/dc/terms/description": "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simple Knowledge Organization System" + "@value": "Small Angle Scattering Biological Data Bank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/skos" + "@id": "https://www.uniprot.org/database/DB-0258" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/skos" + "@id": "https://registry.identifiers.org/registry/sasbdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos" + "@id": "https://www.re3data.org/repository/r3d100012273" }, { - "@id": "https://fairsharing.org/FAIRsharing.48e326" + "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "life science" }, { - "@value": "subject agnostic" + "@value": "molecular biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/2004/02/skos/" - }, - "https://bioregistry.io/schema/#0000005": "prefLabel", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2004/02/skos/core#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.w3.org/TR/skos-reference/skos.rdf" + "@id": "http://www.sasbdb.org/" }, + "https://bioregistry.io/schema/#0000005": "SASDAX8", + "https://bioregistry.io/schema/#0000006": "http://www.sasbdb.org/data/$1", + "https://bioregistry.io/schema/#0000008": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9018-4680" + "@id": "https://orcid.org/0000-0003-1321-3956" }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2004/02/skos/core#", + "https://bioregistry.io/schema/#0000024": "http://www.sasbdb.org/data/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + "@id": "http://www.sasbdb.org/data/SASDAX8" }, "https://bioregistry.io/schema/#0000029": { - "@value": "skos" + "@value": "sasbdb" } }, { - "@id": "http://www.wikidata.org/entity/P6861", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas", + "@id": "https://fairsharing.org/FAIRsharing.7mnebr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/prefixcc", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A web-developer centric archive of prefixes and URI prefixes" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Prefix.cc" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://prefix.cc/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "foaf" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://prefix.cc/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9950-5209" + "@id": "https://www.uniprot.org/database/DB-0079", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC", + "@id": "http://www.ontobee.org/ontology/FOBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSO", + "@id": "https://registry.identifiers.org/registry/xenbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wrvze3", + "@id": "https://registry.identifiers.org/registry/kegg.module", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/447", + "@id": "https://bioregistry.io/registry/google.book", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Search the world's most comprehensive index of full-text books.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Google Books" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P675" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://books.google.com" + }, + "https://bioregistry.io/schema/#0000005": "qafeQTWIWmcC", + "https://bioregistry.io/schema/#0000006": "https://books.google.com/books?id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://books.google.com/books?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://books.google.com/books?id=qafeQTWIWmcC" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "google.book" } }, { - "@id": "https://bioregistry.io/registry/pubmed", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2ma4gq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/civic.mpid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.", + "http://purl.org/dc/terms/description": "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubMed" + "@value": "CIViC Molecular Profile" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/civic.mpid" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "559", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/molecular_profile/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/molecular_profile/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://civicdb.org/links/molecular_profile/559" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "civic.mpid" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010424", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3870", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/edam", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.identifiers.org/registry/pubmed" + "@id": "http://edamontology.org/data_2723" }, { - "@id": "http://edamontology.org/data_1187" + "@id": "http://edamontology.org/data_3757" }, { - "@id": "https://fairsharing.org/FAIRsharing.a5sv8m" + "@id": "http://edamontology.org/data_2631" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000302" + "@id": "http://edamontology.org/data_1162" }, { - "@id": "http://www.wikidata.org/entity/P698" + "@id": "http://edamontology.org/data_1105" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed" + "@id": "http://edamontology.org/data_1011" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID" + "@id": "http://edamontology.org/data_2314" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed" + "@id": "http://edamontology.org/data_1129" }, { - "@id": "https://registry.bio2kg.org/resource/pubmed" + "@id": "http://edamontology.org/data_2380" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://edamontology.org/data_1141" + }, { - "@value": "traditional medicine" + "@id": "http://edamontology.org/data_2386" }, { - "@value": "earth science" + "@id": "http://edamontology.org/data_2667" }, { - "@value": "biomedical science" + "@id": "http://edamontology.org/data_2613" }, { - "@value": "life science" + "@id": "http://edamontology.org/data_2656" }, { - "@value": "environmental science" + "@id": "http://edamontology.org/data_1004" }, { - "@value": "bibliography" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/PubMed/" - }, - "https://bioregistry.io/schema/#0000005": "16333295", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/pubmed/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1798-9797" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "http://edamontology.org/data_1176" + }, { - "@value": "pmid" + "@id": "http://edamontology.org/data_3264" }, { - "@value": "PubMed" + "@id": "http://edamontology.org/data_2104" }, { - "@value": "PMID" + "@id": "http://edamontology.org/data_2389" }, { - "@value": "MEDLINE" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/pubmed/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/pubmed/16333295" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pubmed" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4338", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2870", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/emdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Electron Microscopy Data Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://edamontology.org/data_2638" + }, + { + "@id": "http://edamontology.org/data_2666" + }, + { + "@id": "http://edamontology.org/data_2629" + }, + { + "@id": "http://edamontology.org/data_2665" + }, + { + "@id": "http://edamontology.org/data_2605" + }, + { + "@id": "http://edamontology.org/data_1136" + }, + { + "@id": "http://edamontology.org/data_1188" + }, + { + "@id": "http://edamontology.org/data_2719" + }, + { + "@id": "http://edamontology.org/data_2367" + }, { "@id": "http://edamontology.org/data_1146" }, { - "@id": "https://www.re3data.org/repository/r3d100010562" + "@id": "http://edamontology.org/data_2657" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB" + "@id": "http://edamontology.org/data_2650" }, { - "@id": "https://fairsharing.org/FAIRsharing.651n9j" + "@id": "http://edamontology.org/data_2626" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb" + "@id": "http://edamontology.org/data_2787" }, { - "@id": "https://registry.identifiers.org/registry/emdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://edamontology.org/data_1003" + }, { - "@value": "virology" + "@id": "http://edamontology.org/data_1098" }, { - "@value": "epidemiology" + "@id": "http://edamontology.org/data_2659" }, { - "@value": "structural biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/pdbe/emdb/" - }, - "https://bioregistry.io/schema/#0000005": "EMD-1001", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe/entry/emdb/$1", - "https://bioregistry.io/schema/#0000008": "^EMD-\\d{4,5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7663-9028" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe/entry/emdb/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "emdb" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011033", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/sibo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Social Behavior in insects", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/sibo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Social Insect Behavior Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://edamontology.org/data_1187" + }, { - "@id": "http://www.ontobee.org/ontology/SIBO" + "@id": "http://edamontology.org/data_2298" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SIBO" + "@id": "http://edamontology.org/data_1042" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo" + "@id": "http://edamontology.org/data_2325" }, { - "@id": "https://www.obofoundry.org/ontology/sibo" + "@id": "http://edamontology.org/data_2660" }, { - "@id": "http://aber-owl.net/ontology/SIBO" + "@id": "http://edamontology.org/data_1177" }, { - "@id": "https://fairsharing.org/FAIRsharing.q09hck" + "@id": "http://edamontology.org/data_2652" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://edamontology.org/data_2741" + }, { - "@value": "obo" + "@id": "http://edamontology.org/data_2632" }, { - "@value": "ontology" + "@id": "http://edamontology.org/data_2302" }, { - "@value": "biology" + "@id": "http://edamontology.org/data_2609" + }, + { + "@id": "http://edamontology.org/data_2654" + }, + { + "@id": "http://edamontology.org/data_2669" + }, + { + "@id": "http://edamontology.org/data_2651" + }, + { + "@id": "http://edamontology.org/data_2700" + }, + { + "@id": "http://edamontology.org/data_2658" + }, + { + "@id": "http://edamontology.org/data_1155" + }, + { + "@id": "http://edamontology.org/data_2639" + }, + { + "@id": "http://edamontology.org/data_2620" + }, + { + "@id": "http://edamontology.org/data_2390" + }, + { + "@id": "http://edamontology.org/data_2608" + }, + { + "@id": "http://edamontology.org/data_2662" + }, + { + "@id": "http://edamontology.org/data_3021" + }, + { + "@id": "http://edamontology.org/data_2766" + }, + { + "@id": "http://edamontology.org/data_1182" + }, + { + "@id": "http://edamontology.org/data_1138" + }, + { + "@id": "http://edamontology.org/data_1039" + }, + { + "@id": "http://edamontology.org/data_2326" + }, + { + "@id": "http://edamontology.org/data_2738" + }, + { + "@id": "http://edamontology.org/data_2392" + }, + { + "@id": "http://edamontology.org/data_2611" + }, + { + "@id": "http://edamontology.org/data_1127" + }, + { + "@id": "http://edamontology.org/data_2758" + }, + { + "@id": "http://edamontology.org/data_1180" + }, + { + "@id": "http://edamontology.org/data_2641" + }, + { + "@id": "http://edamontology.org/data_2642" + }, + { + "@id": "http://edamontology.org/data_1035" + }, + { + "@id": "http://edamontology.org/data_1040" + }, + { + "@id": "http://edamontology.org/data_1147" + }, + { + "@id": "http://edamontology.org/data_2664" + }, + { + "@id": "http://edamontology.org/data_2653" + }, + { + "@id": "http://edamontology.org/data_2644" + }, + { + "@id": "http://edamontology.org/data_2645" + }, + { + "@id": "http://edamontology.org/data_1805" + }, + { + "@id": "http://edamontology.org/data_2344" + }, + { + "@id": "http://edamontology.org/data_2343" + }, + { + "@id": "http://edamontology.org/data_2292" + }, + { + "@id": "http://edamontology.org/data_2756" + }, + { + "@id": "http://edamontology.org/data_3856" + }, + { + "@id": "http://edamontology.org/data_1041" + }, + { + "@id": "http://edamontology.org/data_2619" + }, + { + "@id": "http://edamontology.org/data_2610" + }, + { + "@id": "http://edamontology.org/data_3274" + }, + { + "@id": "http://edamontology.org/data_2616" + }, + { + "@id": "http://edamontology.org/data_1179" + }, + { + "@id": "http://edamontology.org/data_2346" + }, + { + "@id": "http://edamontology.org/data_2789" + }, + { + "@id": "http://edamontology.org/data_1027" + }, + { + "@id": "http://edamontology.org/data_1174" + }, + { + "@id": "http://edamontology.org/data_2625" + }, + { + "@id": "http://edamontology.org/data_1106" + }, + { + "@id": "http://edamontology.org/data_2356" + }, + { + "@id": "http://edamontology.org/data_2309" + }, + { + "@id": "http://edamontology.org/data_2773" + }, + { + "@id": "http://edamontology.org/data_2646" + }, + { + "@id": "http://edamontology.org/data_1133" + }, + { + "@id": "http://edamontology.org/data_1089" + }, + { + "@id": "http://edamontology.org/data_2716" + }, + { + "@id": "http://edamontology.org/data_1153" + }, + { + "@id": "http://edamontology.org/data_2634" + }, + { + "@id": "http://edamontology.org/data_2615" + }, + { + "@id": "http://edamontology.org/data_1128" + }, + { + "@id": "http://edamontology.org/data_3103" + }, + { + "@id": "http://edamontology.org/data_1161" + }, + { + "@id": "http://edamontology.org/data_3265" + }, + { + "@id": "http://edamontology.org/data_1002" + }, + { + "@id": "http://edamontology.org/data_2622" + }, + { + "@id": "http://edamontology.org/data_1181" + }, + { + "@id": "http://edamontology.org/data_2628" + }, + { + "@id": "http://edamontology.org/data_2578" + }, + { + "@id": "http://edamontology.org/data_2635" + }, + { + "@id": "http://edamontology.org/data_1173" + }, + { + "@id": "http://edamontology.org/data_3952" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EDAM Ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/sibo" + "@value": " http://edamontology.org" }, - "https://bioregistry.io/schema/#0000005": "0000509", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SIBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/sibo.owl" + "https://bioregistry.io/schema/#0000005": { + "@value": "1004" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" + "https://bioregistry.io/schema/#0000006": { + "@value": "http://edamontology.org/data_$1" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SIBO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "sibo" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3nx7t", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0069", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1509-4981" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORDO", + "@id": "https://bioportal.bioontology.org/ontologies/AEO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://aber-owl.net/ontology/RXNORM", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/co_359", + "@id": "https://bioregistry.io/registry/genecards.geneannot", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "December 2019", + "http://purl.org/dc/terms/description": "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sunflower ontology" + "@value": "GeneAnnot: Microarray Gene Annotation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/geneannot" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://cropontology.org/ontology/CO_359" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_359" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "gene expression" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_359/Sunflower" - }, - "https://bioregistry.io/schema/#0000005": "0000947", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_359:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_359/Sunflower/owl" + "@id": "http://genecards.weizmann.ac.il/geneannot/" }, + "https://bioregistry.io/schema/#0000005": "GSTA1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N1e1af9a9bb40494590a2f364cd4896a2" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_359:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_359:0000947" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_359" - } - }, - { - "@id": "_:N1e1af9a9bb40494590a2f364cd4896a2", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "genecards.geneannot" } }, { - "@id": "https://registry.identifiers.org/registry/disprot.region", + "@id": "http://www.ontobee.org/ontology/EDAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/pharmvar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium.", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pharmacogene Variation Consortium" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/pharmvar" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "pharmacogenomics" - }, - { - "@value": "variant" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.pharmvar.org" - }, - "https://bioregistry.io/schema/#0000005": "CYP2A6", - "https://bioregistry.io/schema/#0000006": "https://www.pharmvar.org/gene/$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/hgnc.symbol" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.pharmvar.org/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.pharmvar.org/gene/CYP2A6" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmvar" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/proglyc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProGlycProt" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/proglyc" - }, + "@id": "https://orcid.org/0000-0001-9896-3531", + "http://www.w3.org/2000/01/rdf-schema#label": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC" + "@value": "Dr. Alpha Tom Kodamullil" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc" + "@value": "Alpha Tom Kodamullil" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.proglycprot.org/" - }, - "https://bioregistry.io/schema/#0000005": "AC119", - "https://bioregistry.io/schema/#0000006": "http://www.proglycprot.org/detail.aspx?ProId=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]C\\d{1,3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.proglycprot.org/detail.aspx?ProId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.proglycprot.org/detail.aspx?ProId=AC119" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "proglyc" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "alpha.tom.kodamullil@scai.fraunhofer.de" } }, { - "@id": "http://www.ontobee.org/ontology/MRO", + "@id": "https://registry.identifiers.org/registry/eco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/hogenom", + "@id": "https://bioregistry.io/registry/icd10cm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.", + "http://purl.org/dc/terms/description": "ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Complete Genome Homologous Genes Families" + "@value": "International Classification of Diseases, 10th Revision, Clinical Modification" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90" }, { - "@id": "https://registry.identifiers.org/registry/hogenom" + "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM" }, { - "@id": "https://fairsharing.org/FAIRsharing.qe8tz8" + "@id": "http://aber-owl.net/ontology/ICD10CM" }, { - "@id": "https://registry.bio2kg.org/resource/hogenom" + "@id": "http://www.wikidata.org/entity/P4229" }, { - "@id": "https://www.uniprot.org/database/DB-0044" + "@id": "https://fairsharing.org/FAIRsharing.hpvbxb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "phylogenetics" + "@value": "health science" }, { - "@value": "phylogeny" + "@value": "medicine" }, { - "@value": "classification" + "@value": "ontology" }, { - "@value": "sequence" + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pbil.univ-lyon1.fr/databases/hogenom/" + "@id": "https://www.icd10data.com/ICD10CM" }, - "https://bioregistry.io/schema/#0000005": "HBG284870", - "https://bioregistry.io/schema/#0000006": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "F45.21", + "https://bioregistry.io/schema/#0000006": "https://icd.codes/icd10cm/$1", + "https://bioregistry.io/schema/#0000008": "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=HBG284870" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hogenom" - } - }, - { - "@id": "https://bioregistry.io/registry/smart", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simple Modular Architecture Research Tool" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N05e1f9d70eab443abe9085e5871a4338" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/smart" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMART" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hsbpq3" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart" - }, - { - "@id": "https://www.uniprot.org/database/DB-0097" - }, - { - "@id": "https://registry.bio2kg.org/resource/smart" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "domain" - }, - { - "@value": "life science" - }, - { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://smart.embl-heidelberg.de/" + "https://bioregistry.io/schema/#0000023": { + "@value": "ICD10CM" }, - "https://bioregistry.io/schema/#0000005": "SM00015", - "https://bioregistry.io/schema/#0000006": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1", - "https://bioregistry.io/schema/#0000008": "^SM\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=", + "https://bioregistry.io/schema/#0000024": "https://icd.codes/icd10cm/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=SM00015" + "@id": "https://icd.codes/icd10cm/F45.21" }, "https://bioregistry.io/schema/#0000029": { - "@value": "smart" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "icd10cm" } }, { - "@id": "https://orcid.org/0000-0002-8489-208X", + "@id": "_:N05e1f9d70eab443abe9085e5871a4338", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Steven E. Wilson" + "@value": "Patricia Brooks" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sewilson@lbl.gov" + "@value": "pbrooks@hcfa.gov" } }, { - "@id": "https://www.re3data.org/repository/r3d100011865", + "@id": "https://fairsharing.org/FAIRsharing.8wm364", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/google.patent", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Google Patents" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent" - }, - { - "@id": "https://registry.identifiers.org/registry/google.patent" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.google.com/patents/" - }, - "https://bioregistry.io/schema/#0000005": "US4145692", - "https://bioregistry.io/schema/#0000006": "https://www.google.com/patents/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "patent" - }, - "https://bioregistry.io/schema/#0000024": "https://www.google.com/patents/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.google.com/patents/US4145692" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "google.patent" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv", + "@id": "https://www.re3data.org/repository/r3d100012461", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI", + "@id": "https://registry.identifiers.org/registry/mesh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/clao", + "@id": "https://fairsharing.org/FAIRsharing.h5f091", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/SCDO", + "@id": "http://aber-owl.net/ontology/MS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/bold.taxonomy", + "@id": "https://bioregistry.io/registry/oncotree", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.", + "http://purl.org/dc/terms/description": "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BOLD Systems taxon" + "@value": "OncoTree" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/bold.taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD" + "@value": "cancer" }, { - "@id": "http://www.wikidata.org/entity/P3606" + "@value": "oncology" }, { - "@id": "https://registry.bio2kg.org/resource/bold" + "@value": "clinical decision support systems" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.boldsystems.org/" + "@id": "http://oncotree.mskcc.org" }, - "https://bioregistry.io/schema/#0000005": "27267", - "https://bioregistry.io/schema/#0000006": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "BLL", + "https://bioregistry.io/schema/#0000006": "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=", + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/efo" + }, + "https://bioregistry.io/schema/#0000024": "http://oncotree.mskcc.org/api/tumorTypes/search/code/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=27267" + "@id": "http://oncotree.mskcc.org/api/tumorTypes/search/code/BLL" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bold.taxonomy" + "@value": "oncotree" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES", + "@id": "https://registry.identifiers.org/registry/cath.domain", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012457", + "@id": "http://edamontology.org/data_2608", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug", + "@id": "https://registry.bio2kg.org/resource/bioportal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps", + "@id": "https://registry.identifiers.org/registry/foodon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0002-3625-0955", + "@id": "https://orcid.org/0000-0002-9611-1279", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Charles Ettensohn" + "@value": "Erik Segerdell" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ettensohn@cmu.edu" + "@value": "Erik.Segerdell@cchmc.org" } }, { - "@id": "https://registry.identifiers.org/registry/aop", + "@id": "https://bioregistry.io/metaregistry/biocontext/FAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma", + "@id": "https://fairsharing.org/FAIRsharing.rycy2x", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/tccd", + "@id": "http://edamontology.org/data_2662", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMF", + "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.uniprot.org/database/DB-0074", + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/snomedct", + "@id": "https://registry.identifiers.org/registry/img.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/vmhgene", + "@id": "https://bioregistry.io/registry/macie", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", + "http://purl.org/dc/terms/description": "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VMH Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/vmhgene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vmh.life/" - }, - "https://bioregistry.io/schema/#0000005": "8639.1", - "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#gene/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+\\.[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.vmh.life/#gene/8639.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vmhgene" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/AGRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/prosite", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PROSITE" + "@value": "Mechanism, Annotation and Classification in Enzymes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.vwc6bd" - }, - { - "@id": "https://www.uniprot.org/database/DB-0084" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie" }, { - "@id": "https://registry.identifiers.org/registry/prosite" + "@id": "https://registry.bio2kg.org/resource/macie" }, { - "@id": "http://www.wikidata.org/entity/P4355" + "@id": "http://edamontology.org/data_2641" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite" + "@id": "https://fairsharing.org/FAIRsharing.7xkx69" }, { - "@id": "https://registry.bio2kg.org/resource/prosite" + "@id": "https://registry.identifiers.org/registry/macie" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite" + "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" + "@value": "enzyme" }, { - "@value": "protein" + "@value": "life science" }, { - "@value": "biology" + "@value": "pathway" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.expasy.org/prosite/" + "@id": "https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html" }, - "https://bioregistry.io/schema/#0000005": "PS00001", - "https://bioregistry.io/schema/#0000006": "https://prosite.expasy.org/$1", - "https://bioregistry.io/schema/#0000008": "^PS\\d{5}$", + "https://bioregistry.io/schema/#0000005": "M0001", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1", + "https://bioregistry.io/schema/#0000008": "^M\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://prosite.expasy.org/", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://prosite.expasy.org/PS00001" + "@id": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=M0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "prosite" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pubmed", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "macie" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB", + "@id": "https://registry.identifiers.org/registry/hgnc.symbol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.rj3kj5", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME", + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/vz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/odc.tbi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Data Commons for Traumatic Brain Injury" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/odc.tbi" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://odc-tbi.org" - }, - "https://bioregistry.io/schema/#0000005": "408", - "https://bioregistry.io/schema/#0000006": "https://odc-tbi.org/data/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://odc-tbi.org/data/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://odc-tbi.org/data/408" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "odc.tbi" - } - }, - { - "@id": "http://edamontology.org/data_2629", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/nhcdr", + "@id": "https://bioregistry.io/registry/echinobase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NINDS Human Cell and Data Repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR" + "@value": "Echinobase" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://stemcells.nindsgenetics.org" + "@id": "https://www.echinobase.org" }, - "https://bioregistry.io/schema/#0000005": "ND50028", - "https://bioregistry.io/schema/#0000006": "https://stemcells.nindsgenetics.org?line=$1", + "https://bioregistry.io/schema/#0000005": "23159291", + "https://bioregistry.io/schema/#0000006": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://stemcells.nindsgenetics.org?line=", + "https://bioregistry.io/schema/#0000024": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://stemcells.nindsgenetics.org?line=ND50028" + "@id": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=23159291" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nhcdr" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/nmpdr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xs6t67", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.0a2576", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "echinobase" } }, { - "@id": "https://bioregistry.io/registry/proco", + "@id": "https://bioregistry.io/registry/fbbt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "An ontology of Drosophila melanogaster anatomy.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/flybase" + } + ], "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/proco-ontology/PROCO" + "@id": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Process Chemistry Ontology" + "@value": "Drosophila gross anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/PROCO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt" }, { - "@id": "http://www.ontobee.org/ontology/PROCO" + "@id": "https://fairsharing.org/FAIRsharing.y2qkst" }, { - "@id": "https://www.obofoundry.org/ontology/proco" + "@id": "https://registry.bio2kg.org/resource/fbbt" + }, + { + "@id": "http://aber-owl.net/ontology/FBBT" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt" + }, + { + "@id": "https://www.obofoundry.org/ontology/fbbt" + }, + { + "@id": "http://www.ontobee.org/ontology/FBbt" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FB-BT" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "obo" }, + { + "@value": "fly" + }, { "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "developmental biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/proco-ontology/PROCO" + "@id": "http://purl.obolibrary.org/obo/fbbt" }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PROCO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "00007294", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBbt_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/proco.owl" + "@id": "http://purl.obolibrary.org/obo/fbbt.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/cheminf" - }, - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/sbo" - }, - { - "@id": "https://bioregistry.io/registry/pato" - }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1373-1705" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/obi" + "@value": "FBbt" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@value": "FBbt_root" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8786-1756" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBbt_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FBbt_00007294" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PROCO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "fbbt" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/zfin", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/nhcdr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NINDS Human Cell and Data Repository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://stemcells.nindsgenetics.org" + }, + "https://bioregistry.io/schema/#0000005": "ND50028", + "https://bioregistry.io/schema/#0000006": "https://stemcells.nindsgenetics.org?line=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://stemcells.nindsgenetics.org?line=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PROCO_0000001" + "@id": "https://stemcells.nindsgenetics.org?line=ND50028" }, "https://bioregistry.io/schema/#0000029": { - "@value": "proco" + "@value": "nhcdr" } }, { - "@id": "https://bioregistry.io/registry/sfam", + "@id": "http://www.wikidata.org/entity/P3382", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/sabiork.compound", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Selventa legacy protein family namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Selventa Families" + "@value": "SABIO-RK Compound" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "selventa" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "protein families" + "@id": "https://registry.identifiers.org/registry/sabiork.compound" }, { - "@value": "bel" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt" + "@id": "http://sabiork.h-its.org/" }, - "https://bioregistry.io/schema/#0000005": "F0001", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/sfam/$1", - "https://bioregistry.io/schema/#0000008": "^F\\d{4}$", + "https://bioregistry.io/schema/#0000005": "75", + "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/newSearch?q=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/sfam/", + "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/newSearch?q=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/sfam/F0001" + "@id": "http://sabiork.h-its.org/newSearch?q=75" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sfam" + "@value": "sabiork.compound" } }, { - "@id": "https://www.re3data.org/repository/r3d100010650", + "@id": "https://registry.identifiers.org/registry/nucleotide", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS", + "@id": "https://bioportal.bioontology.org/ontologies/OBCS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://orcid.org/0000-0002-7702-4495", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Allyson Lister" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "allyson.lister@oerc.ox.ac.uk" } }, { - "@id": "https://registry.identifiers.org/registry/nando", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc", + "@id": "https://bioregistry.io/registry/ncbi.resource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" + }, + "https://bioregistry.io/schema/#0000005": "ECOCYC", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/ncbi/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/ncbi/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/metaregistry/ncbi/ECOCYC" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ncbi.resource" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop", + "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-5103-9058", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ali Syed" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ali.syed@kaust.edu.sa" + "@id": "https://fairsharing.org/FAIRsharing.etp533", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100010775", + "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/obv", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/protcom", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ccdc", + "@id": "https://bioregistry.io/registry/kcris", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.", + "http://purl.org/dc/terms/description": "The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CCDC Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/ccdc" + "@value": "Korean Clinical Research Information Service" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ccdc.cam.ac.uk/" + "@id": "https://cris.nih.go.kr" }, - "https://bioregistry.io/schema/#0000005": "1829126", - "https://bioregistry.io/schema/#0000006": "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG", - "https://bioregistry.io/schema/#0000008": "^\\d{6,7}$", + "https://bioregistry.io/schema/#0000005": "KCT0008394", + "https://bioregistry.io/schema/#0000008": "^KCT\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ccdc:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:1829126&sid=IDORG" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "ccdc" + "@value": "kcris" } }, { - "@id": "https://bioregistry.io/registry/gendis", + "@id": "https://bioregistry.io/registry/confident.series", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases.", + "http://purl.org/dc/terms/description": "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomic Distribution of structural Superfamilies" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/gendis" + "@value": "ConfIDent Event Series" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "classification" + "@value": "grouping" }, { - "@value": "genome" + "@value": "meetings" + }, + { + "@value": "metascience" + }, + { + "@value": "conferences" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://caps.ncbs.res.in/gendis/home.html" + "@id": "https://www.confident-conference.org/index.php/Category:Event_Series" }, - "https://bioregistry.io/schema/#0000005": "46946", - "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "AAC", + "https://bioregistry.io/schema/#0000006": "https://www.confident-conference.org/index.php/Event_Series:$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1595-3213" }, - "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=", + "https://bioregistry.io/schema/#0000024": "https://www.confident-conference.org/index.php/Event_Series:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=46946" + "@id": "https://www.confident-conference.org/index.php/Event_Series:AAC" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gendis" + "@value": "confident.series" } }, { - "@id": "https://bioregistry.io/registry/hesa", + "@id": "https://bioregistry.io/registry/subtiwiki", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An identifier for institutions in the United Kingdom, used in GRID and ROR.", + "http://purl.org/dc/terms/description": "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UK Higher Education Statistics Agency" + "@value": "SubtiWiki" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/subtiwiki" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2ck3st" + }, + { + "@id": "https://registry.bio2kg.org/resource/subtiwiki" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "institution" + "@value": "gene" }, { - "@value": "bibliometrics" + "@value": "dna" + }, + { + "@value": "life science" + }, + { + "@value": "protein" + }, + { + "@value": "rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hesa.ac.uk" + "@id": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page" }, - "https://bioregistry.io/schema/#0000005": "0154", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "BSU29180", + "https://bioregistry.io/schema/#0000006": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1", + "https://bioregistry.io/schema/#0000008": "^BSU\\d{5}$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/BSU29180" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "hesa" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oridb.schizo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "subtiwiki" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PECO", + "@id": "http://www.ontobee.org/ontology/COB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB", + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://www.wikidata.org/entity/P3937", + "@id": "https://bioportal.bioontology.org/ontologies/XLMOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.uniprot.org/database/DB-0158", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/vt", + "@id": "https://bioregistry.io/registry/innatedb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms.", + "http://purl.org/dc/terms/description": "InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/AnimalGenome/vertebrate-trait-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate trait ontology" + "@value": "A Knowledge Resource for Innate Immunity Interactions and Pathways" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/VT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VT" - }, - { - "@id": "http://aber-owl.net/ontology/VT" - }, - { - "@id": "http://www.ontobee.org/ontology/VT" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VT" - }, - { - "@id": "https://www.obofoundry.org/ontology/vt" - }, - { - "@id": "https://registry.bio2kg.org/resource/vt" + "@id": "https://registry.bio2kg.org/resource/innatedb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt" + "@id": "https://www.re3data.org/repository/r3d100010676" }, { - "@id": "https://fairsharing.org/FAIRsharing.10gr18" + "@id": "https://fairsharing.org/FAIRsharing.rb2drw" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "animal physiology" - }, - { - "@value": "biology" - }, - { - "@value": "trait" + "@value": "pathway" }, { - "@value": "developmental biology" + "@value": "immunology" }, { - "@value": "obo" + "@value": "protein" }, { - "@value": "physiology" + "@value": "life science" }, { - "@value": "ontology" + "@value": "interaction" }, { - "@value": "vertebrate" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/AnimalGenome/vertebrate-trait-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000685", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VT_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vt.owl" + "@id": "http://www.innatedb.ca/" }, + "https://bioregistry.io/schema/#0000005": "20021", + "https://bioregistry.io/schema/#0000006": "http://www.innatedb.ca/getGeneCard.do?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2346-5201" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VT_", + "https://bioregistry.io/schema/#0000024": "http://www.innatedb.ca/getGeneCard.do?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VT_0000685" + "@id": "http://www.innatedb.ca/getGeneCard.do?id=20021" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vt" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "innatedb" } }, { - "@id": "https://fairsharing.org/FAIRsharing.rbjs3e", + "@id": "https://fairsharing.org/FAIRsharing.evfe2s", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo", + "@id": "http://agroportal.lirmm.fr/ontologies/OM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.identifiers.org/registry/meddra", + "@id": "http://www.wikidata.org/entity/P1155", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.bio2kg.org/resource/mgiid", + "@id": "https://registry.bio2kg.org/resource/kegg.pathway", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/opl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/reactome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0068", + "@id": "http://aber-owl.net/ontology/CRYOEM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD", + "@id": "https://bioregistry.io/metaregistry/biocontext/OGG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/depmap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-0341-4888", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DepMap Cell Lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://depmap.org/portal" - }, - "https://bioregistry.io/schema/#0000005": "ACH-000001", - "https://bioregistry.io/schema/#0000006": "https://depmap.org/portal/cell_line/$1", - "https://bioregistry.io/schema/#0000008": "^ACH-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://depmap.org/portal/cell_line/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://depmap.org/portal/cell_line/ACH-000001" + "@value": "Federica Quaglia" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "depmap" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0241", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FYPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/odc.sci", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/OVAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "f.quaglia@ibiom.cnr.it" } }, { - "@id": "https://bioregistry.io/registry/imsr.apb", + "@id": "https://bioregistry.io/registry/lspci", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]", + "http://purl.org/dc/terms/description": "Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NHMRC Australian PhenomeBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB" + "@value": "Laboratory of Systems Pharmacology Compound" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "allele" - }, - { - "@value": "live mouse" - }, - { - "@value": "embryo" - }, - { - "@value": "transgene" - }, - { - "@value": "chromosome" - }, - { - "@value": "transgenic" - }, - { - "@value": "phenotype" - }, - { - "@value": "mutation" - }, - { - "@value": "murine" - }, - { - "@value": "strain" - }, - { - "@value": "database" - }, - { - "@value": "gene" + "@value": "metabolites" }, { - "@value": "alteration" + "@value": "chemistry" }, { - "@value": "sperm" + "@value": "drugs" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pb.apf.edu.au/phenbank/homePage.html" + "@id": "https://labsyspharm.github.io/lspci/" }, - "https://bioregistry.io/schema/#0000005": "7345", - "https://bioregistry.io/schema/#0000006": "https://pb.apf.edu.au/phenbank/strain.html?id=$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://labsyspharm.github.io/lspci/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pb.apf.edu.au/phenbank/strain.html?id=", + "https://bioregistry.io/schema/#0000024": "https://labsyspharm.github.io/lspci/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pb.apf.edu.au/phenbank/strain.html?id=7345" + "@id": "https://labsyspharm.github.io/lspci/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "imsr.apb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "lspci" } }, { - "@id": "https://bioregistry.io/registry/kegg.genome", + "@id": "https://bioregistry.io/registry/sugarbind", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG Genome is a collection of organisms whose genomes have been completely sequenced.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], + "http://purl.org/dc/terms/description": "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Genome" + "@value": "SugarBind" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME" + "@id": "https://fairsharing.org/FAIRsharing.d064y6" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind" }, { - "@id": "https://registry.identifiers.org/registry/kegg.genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome" + "@id": "https://registry.identifiers.org/registry/sugarbind" + }, + { + "@id": "http://aber-owl.net/ontology/SUGARBIND" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/catalog/org_list.html" - }, - "https://bioregistry.io/schema/#0000005": "T06648", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^(T0\\d+|\\w{3,5})$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "kegg_genomes" + "@value": "biomedical science" }, { - "@value": "kegg_genome" + "@value": "ontology" + }, + { + "@value": "glycomics" } ], - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sugarbind.expasy.org/" + }, + "https://bioregistry.io/schema/#0000005": "lectins/172", + "https://bioregistry.io/schema/#0000006": "http://sugarbind.expasy.org/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+\\/[0-9]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/SUGARBIND/1/sugarbind.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0948-4537" + }, + "https://bioregistry.io/schema/#0000024": "http://sugarbind.expasy.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/T06648" + "@id": "http://sugarbind.expasy.org/lectins/172" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.genome" + "@value": "sugarbind" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP", + "@id": "https://www.obofoundry.org/ontology/ncit", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/nlx.dys", + "@id": "https://bioregistry.io/registry/rna_sstrand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroLex Dysfunction" + "@value": "RNA SSTRAND" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/rna_sstrand" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "disease" - }, - { - "@value": "phenotypes" + "@value": "rna" }, { - "@value": "disorders" + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scicrunch.org/scicrunch/interlex/dashboard" + "@id": "http://www.rnasoft.ca/sstrand" }, - "https://bioregistry.io/schema/#0000005": "20090303", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "CRW_00469", + "https://bioregistry.io/schema/#0000006": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mondo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_", + "https://bioregistry.io/schema/#0000024": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_20090303" + "@id": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=CRW_00469" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.dys" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OGI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "rna_sstrand" } }, { - "@id": "https://bioregistry.io/registry/arrayexpress", + "@id": "https://bioregistry.io/registry/depod", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.", + "http://purl.org/dc/terms/description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ArrayExpress" + "@value": "Human Dephosphorylation Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010222" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6k0kwd" - }, - { - "@id": "https://registry.identifiers.org/registry/arrayexpress" + "@id": "https://www.uniprot.org/database/DB-0190" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD" }, { - "@id": "https://registry.bio2kg.org/resource/arrayexpress" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "expression" + "@id": "https://www.re3data.org/repository/r3d100011936" }, { - "@value": "functional genomics" + "@id": "https://registry.identifiers.org/registry/depod" }, { - "@value": "nucleotide" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod" }, { - "@value": "microarray" + "@id": "https://fairsharing.org/FAIRsharing.q9j2e3" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/arrayexpress/" + "@id": "http://www.depod.bioss.uni-freiburg.de" + }, + "https://bioregistry.io/schema/#0000005": "PTPN1", + "https://bioregistry.io/schema/#0000006": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/hgnc.symbol" }, - "https://bioregistry.io/schema/#0000005": "E-MEXP-1712", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/arrayexpress/experiments/$1", - "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/arrayexpress/experiments/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3562-7869" + }, + "https://bioregistry.io/schema/#0000024": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1712" + "@id": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=PTPN1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "arrayexpress" + "@value": "depod" } }, { - "@id": "https://bioregistry.io/registry/fbdv", + "@id": "https://bartoc.org/en/node/16", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/registry/imdrf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of Drosophila melanogaster developmental stages.", + "http://purl.org/dc/terms/description": "The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FlyBase/drosophila-developmental-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drosophila development" + "@value": "International Medical Device Regulators Forum" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/FBDV" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.p52pzj" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FB-DV" - }, - { - "@id": "https://registry.bio2kg.org/resource/fbdv" - }, - { - "@id": "https://www.obofoundry.org/ontology/fbdv" - }, - { - "@id": "http://www.ontobee.org/ontology/FBdv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "fly" - }, - { - "@value": "developmental biology" - }, - { - "@value": "development" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "life science" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/fbdv" - }, - "https://bioregistry.io/schema/#0000005": "00000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBdv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fbdv.owl" + "@id": "http://www.imdrf.org/" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1373-1705" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "FBdv" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBdv_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FBdv_00000000" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "fbdv" + "@value": "imdrf" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT", + "@id": "http://edamontology.org/data_2656", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/co_350", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo", + "@id": "https://registry.bio2kg.org/resource/peroxibase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oat ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.35e1c3" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_350" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350" - }, - { - "@id": "https://cropontology.org/ontology/CO_350" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "agriculture" - }, - { - "@value": "ontology" - }, - { - "@value": "botany" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_350/Oat" - }, - "https://bioregistry.io/schema/#0000005": "0000215", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_350:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_350/Oat/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4849-628X" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_350:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_350:0000215" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_350" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb", + "@id": "https://fairsharing.org/FAIRsharing.qcceez", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0001-5831-7439", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Doug Howe" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dhowe@zfin.org" + "@id": "https://fairsharing.org/FAIRsharing.pzvw40", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/snctp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]", + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Swiss National Clinical Trials Portal" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://kofam.ch/en/snctp-portal" - }, - "https://bioregistry.io/schema/#0000005": "SNCTP000005580", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "snctp" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/nextdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nlfff", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/dc_cl", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/dragondb.dna", + "@id": "https://bioregistry.io/registry/kegg", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/dragondb" + "@id": "https://bioregistry.io/registry/kegg.enzyme" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/kegg.environ" + }, + { + "@id": "https://bioregistry.io/registry/kegg.brite" + }, + { + "@id": "https://bioregistry.io/registry/kegg.module" + }, + { + "@id": "https://bioregistry.io/registry/kegg.orthology" + }, + { + "@id": "https://bioregistry.io/registry/kegg.compound" + }, + { + "@id": "https://bioregistry.io/registry/kegg.pathway" + }, + { + "@id": "https://bioregistry.io/registry/kegg.disease" + }, + { + "@id": "https://bioregistry.io/registry/kegg.genes" + }, + { + "@id": "https://bioregistry.io/registry/kegg.rclass" + }, + { + "@id": "https://bioregistry.io/registry/kegg.drug" + }, + { + "@id": "https://bioregistry.io/registry/kegg.metagenome" + }, + { + "@id": "https://bioregistry.io/registry/kegg.dgroup" + }, + { + "@id": "https://bioregistry.io/registry/kegg.ligand" + }, + { + "@id": "https://bioregistry.io/registry/kegg.glycan" + }, + { + "@id": "https://bioregistry.io/registry/kegg.reaction" + }, + { + "@id": "https://bioregistry.io/registry/kegg.genome" } ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DragonDB DNA" + "@value": "Kyoto Encyclopedia of Genes and Genomes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/dragondb.dna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna" + "@id": "https://registry.identifiers.org/registry/kegg" + }, + { + "@id": "https://www.uniprot.org/database/DB-0053" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG" + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000409" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.antirrhinum.net/" + "@id": "http://www.kegg.jp/" }, - "https://bioregistry.io/schema/#0000005": "3hB06", - "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA", - "https://bioregistry.io/schema/#0000008": "^\\d\\w+$", + "https://bioregistry.io/schema/#0000005": "hsa00190", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$", "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.dna:", + "https://bioregistry.io/schema/#0000023": { + "@value": "KEGG" + }, + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=3hB06;class=DNA" + "@id": "http://www.kegg.jp/entry/hsa00190" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dragondb.dna" - } - }, - { - "@id": "http://www.ontobee.org/ontology/BTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PLANP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/UP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "kegg" } }, { - "@id": "https://registry.identifiers.org/registry/hpm.protein", + "@id": "https://registry.identifiers.org/registry/bmrb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fhcmwq", + "@id": "https://registry.identifiers.org/registry/mim", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-1118-1738", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John Beverly" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "johnbeverley2021@u.northwestern.edu" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wvp1t7", + "@id": "https://fairsharing.org/FAIRsharing.zcn4w4", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/cas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/planttfdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0072", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/biocarta.pathway", + "@id": "https://bioregistry.io/registry/mmmp.biomaps", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.", + "http://purl.org/dc/terms/description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioCarta Pathway" + "@value": "Melanoma Molecular Map Project Biomaps" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway" + "@id": "https://registry.bio2kg.org/resource/mmmp" }, { - "@id": "https://registry.identifiers.org/registry/biocarta.pathway" + "@id": "https://registry.identifiers.org/registry/mmmp:biomaps" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "interaction" + }, + { + "@value": "pathway" + }, + { + "@value": "molecule" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.biocarta.com/" + "@id": "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp" }, - "https://bioregistry.io/schema/#0000005": "h_aktPathway", - "https://bioregistry.io/schema/#0000006": "https://cgap.nci.nih.gov/Pathways/BioCarta/$1", - "https://bioregistry.io/schema/#0000008": "^([hm]\\_)?\\w+Pathway$", + "https://bioregistry.io/schema/#0000005": "37", + "https://bioregistry.io/schema/#0000006": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cgap.nci.nih.gov/Pathways/BioCarta/", + "https://bioregistry.io/schema/#0000023": { + "@value": "mmmp:biomaps" + }, + "https://bioregistry.io/schema/#0000024": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cgap.nci.nih.gov/Pathways/BioCarta/h_aktPathway" + "@id": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=37" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biocarta.pathway" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cgsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b34b43", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/panther.pthcmp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "mmmp.biomaps" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STAP", + "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGD", + "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/mdm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/XAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN", + "@id": "https://bioregistry.io/metaregistry/biocontext/AERO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS", + "@id": "https://registry.identifiers.org/registry/aspgd.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/MPIO", + "@id": "https://semanticscience.org/resource/CHEMINF_000563", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/registry/oma.hog", + "@id": "https://bioregistry.io/registry/ricenetdb.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ", + "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OMA HOGs" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/oma.hog" + "@value": "RiceNetDB Gene" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene" + }, + { + "@id": "https://registry.identifiers.org/registry/ricenetdb.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://omabrowser.org" + "@id": "http://bis.zju.edu.cn/ricenetdb/" }, - "https://bioregistry.io/schema/#0000005": "0459895", - "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/oma/hog/HOG:$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", + "https://bioregistry.io/schema/#0000005": "LOC_Os01g49190.1", + "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/oma/hog/HOG:", + "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://omabrowser.org/oma/hog/HOG:0459895" + "@id": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=LOC_Os01g49190.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oma.hog" - } - }, - { - "@id": "https://registry.identifiers.org/registry/nlfff", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "ricenetdb.gene" } }, { - "@id": "https://registry.bio2kg.org/resource/hprd", + "@id": "https://bioregistry.io/registry/drugbank.metabolite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Metabolites in drugbank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DrugBank Metabolite" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://go.drugbank.com" + }, + "https://bioregistry.io/schema/#0000005": "DBMET02292", + "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/metabolites/$1", + "https://bioregistry.io/schema/#0000008": "^DBMET\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/metabolites/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://go.drugbank.com/metabolites/DBMET02292" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drugbank.metabolite" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHEBI", + "@id": "https://bioregistry.io/registry/exac.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ExAC Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene" + }, + { + "@id": "https://registry.identifiers.org/registry/exac.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://exac.broadinstitute.org/" + }, + "https://bioregistry.io/schema/#0000005": "ENSG00000169174", + "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^ENSG\\d{11}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://exac.broadinstitute.org/gene/ENSG00000169174" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "exac.gene" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank", + "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.a6r7zs", + "@id": "https://registry.identifiers.org/registry/biocarta.pathway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/mdm", + "@id": "https://bioregistry.io/registry/ror", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.", + "http://purl.org/dc/terms/description": "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ror-community" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medical Data Models" + "@value": "Research Organization Registry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/MDM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MDM" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wnk2eq" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013816" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MDM" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm" + "@id": "https://registry.identifiers.org/registry/ror" }, { - "@id": "https://registry.identifiers.org/registry/mdm" + "@id": "https://fairsharing.org/FAIRsharing.1jKfji" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "medicine" - }, - { - "@value": "translational medicine" - }, { "@value": "ontology" }, { - "@value": "biomedical science" + "@value": "data management" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://medical-data-models.org/" + "@id": "https://ror.org" }, - "https://bioregistry.io/schema/#0000005": "4776", - "https://bioregistry.io/schema/#0000006": "https://medical-data-models.org/forms/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "03yrm5c26", + "https://bioregistry.io/schema/#0000006": "https://ror.org/$1", + "https://bioregistry.io/schema/#0000008": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/MDM/4/mdm.owl" + "@id": "https://w3id.org/rorio/rorio.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3062-8192" + "@id": "https://orcid.org/0000-0002-2916-3423" }, - "https://bioregistry.io/schema/#0000024": "https://medical-data-models.org/forms/", + "https://bioregistry.io/schema/#0000024": "https://ror.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://medical-data-models.org/forms/4776" + "@id": "https://ror.org/03yrm5c26" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mdm" + "@value": "ror" } }, { - "@id": "https://bioregistry.io/registry/mirbase.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.", + "@id": "https://www.re3data.org/repository/r3d100010468", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "miRBase Families" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mirbase.org/" - }, - "https://bioregistry.io/schema/#0000005": "MIPF0000002", - "https://bioregistry.io/schema/#0000006": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MIRBASE_FAMILY" - }, - "https://bioregistry.io/schema/#0000024": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=MIPF0000002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirbase.family" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/epo", + "@id": "https://fairsharing.org/FAIRsharing.ez2nhb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.recas1", + "@id": "http://aber-owl.net/ontology/UO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.ontobee.org/ontology/CHIRO", + "@id": "https://registry.bio2kg.org/resource/cgnc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/kegg.disease", + "@id": "https://bioregistry.io/registry/fao.asfis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Disease" + "http://purl.org/dc/terms/description": "The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/kegg.disease" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE" - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.disease" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "classification" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Aquatic Sciences and Fisheries Information System" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/disease/" + "@id": "https://www.fao.org/fishery/en/collection/asfis/en" }, - "https://bioregistry.io/schema/#0000005": "H00076", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^H\\d+$", + "https://bioregistry.io/schema/#0000005": "20560", + "https://bioregistry.io/schema/#0000006": "https://www.fao.org/fishery/en/species/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "asfis" + }, + "https://bioregistry.io/schema/#0000024": "https://www.fao.org/fishery/en/species/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/H00076" + "@id": "https://www.fao.org/fishery/en/species/20560" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.disease" + "@value": "fao.asfis" } }, { - "@id": "https://fairsharing.org/FAIRsharing.595710", + "@id": "https://registry.identifiers.org/registry/tair.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal", + "@id": "https://bioregistry.io/metaregistry/biocontext/faldo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp", + "@id": "https://fairsharing.org/FAIRsharing.ztvs34", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-8741-7823", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/aio" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lindsey N. Anderson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "lindsey.anderson@pnnl.gov" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes", + "@id": "https://fairsharing.org/FAIRsharing.amcv1e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/rouge", + "@id": "https://bioregistry.io/registry/ensemblglossary", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ensembl Glossary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ensembl.org/glossary" + }, + "https://bioregistry.io/schema/#0000005": "0000198", + "https://bioregistry.io/schema/#0000006": "http://ensembl.org/glossary/ENSGLOSSARY_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://ensembl.org/glossary/ensembl-glossary/releases/2023-01-04/ensembl-glossary.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://ensembl.org/glossary/ENSGLOSSARY_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ensembl.org/glossary/ENSGLOSSARY_0000198" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensemblglossary" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/prov", + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.re3data.org/repository/r3d100012863", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB", + "@id": "http://www.ontobee.org/ontology/OARCS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/dictybase", + "@id": "https://bioportal.bioontology.org/ontologies/CLYH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/vt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/dictybase.gene" - }, - { - "@id": "https://bioregistry.io/registry/dictybase.est" - } - ], + "http://purl.org/dc/terms/description": "The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/AnimalGenome/vertebrate-trait-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "dictyBase" + "@value": "Vertebrate trait ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase" + "@id": "https://www.obofoundry.org/ontology/vt" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase" + "@id": "http://www.ontobee.org/ontology/VT" }, { - "@id": "https://www.re3data.org/repository/r3d100010586" + "@id": "https://bioportal.bioontology.org/ontologies/VT" }, { - "@id": "https://fairsharing.org/FAIRsharing.4shj9c" + "@id": "https://bioregistry.io/metaregistry/biocontext/VT" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase" + "@id": "http://aber-owl.net/ontology/VT" }, { - "@id": "https://www.uniprot.org/database/DB-0015" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt" }, { - "@id": "https://registry.bio2kg.org/resource/dictybase" + "@id": "http://agroportal.lirmm.fr/ontologies/VT" + }, + { + "@id": "https://registry.bio2kg.org/resource/vt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.10gr18" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "physiology" }, { - "@value": "anatomy" + "@value": "animal physiology" }, { - "@value": "life science" + "@value": "ontology" }, { - "@value": "comparative genomics" + "@value": "trait" + }, + { + "@value": "developmental biology" + }, + { + "@value": "obo" + }, + { + "@value": "vertebrate" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dictybase.org" + "@id": "https://github.com/AnimalGenome/vertebrate-trait-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000685", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vt.owl" }, - "https://bioregistry.io/schema/#0000005": "DDB0191090", - "https://bioregistry.io/schema/#0000006": "http://dictybase.org/gene/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "dictyBase" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" }, - "https://bioregistry.io/schema/#0000024": "http://dictybase.org/gene/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2346-5201" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VT_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://dictybase.org/gene/DDB0191090" + "@id": "http://purl.obolibrary.org/obo/VT_0000685" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dictybase" + "@value": "vt" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC", + "@id": "https://www.re3data.org/repository/r3d100013330", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase", + "@id": "https://registry.bio2kg.org/resource/rgap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/co_358", + "@id": "https://bioregistry.io/registry/come", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cotton ontology from CottonGen database - June 2019", + "http://purl.org/dc/terms/description": "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cotton ontology" + "@value": "The Bioinorganic Motif Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/come" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_358" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358" - }, - { - "@id": "https://cropontology.org/ontology/CO_358" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_358/Cotton" - }, - "https://bioregistry.io/schema/#0000005": "0000139", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_358:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_358/Cotton/owl" + "@id": "https://www.flymine.org/come" }, + "https://bioregistry.io/schema/#0000005": "MOL000160", + "https://bioregistry.io/schema/#0000006": "https://www.flymine.org/come/entry?gn=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N0c4133fa3abd40e2babb1af40e7ea11a" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_358:", + "https://bioregistry.io/schema/#0000024": "https://www.flymine.org/come/entry?gn=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_358:0000139" + "@id": "https://www.flymine.org/come/entry?gn=MOL000160" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_358" + "@value": "come" } }, { - "@id": "_:N0c4133fa3abd40e2babb1af40e7ea11a", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://fairsharing.org/FAIRsharing.y1mmbv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_333", + "@id": "https://registry.identifiers.org/registry/flowrepository", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/bitbucket", + "@id": "https://bioregistry.io/registry/treefam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bitbucket is a Git-based source code repository hosting service owned by Atlassian.", + "http://purl.org/dc/terms/description": "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bitbucket" + "@value": "TreeFam" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bitbucket" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam" }, { - "@id": "https://fairsharing.org/FAIRsharing.fc3431" + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM" }, { - "@id": "https://www.re3data.org/repository/r3d100013478" + "@id": "https://registry.bio2kg.org/resource/treefam" + }, + { + "@id": "https://registry.identifiers.org/registry/treefam" + }, + { + "@id": "https://www.uniprot.org/database/DB-0185" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" + "@value": "classification" }, { - "@value": "software engineering" + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.treefam.org/" + }, + "https://bioregistry.io/schema/#0000005": "TF101014", + "https://bioregistry.io/schema/#0000006": "http://www.treefam.org/family/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.treefam.org/family/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.treefam.org/family/TF101014" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "treefam" + } + }, + { + "@id": "https://bioregistry.io/registry/datacite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/datacite" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DataCite Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/DATACITE" }, { - "@value": "knowledge and information systems" + "@id": "https://bioportal.bioontology.org/ontologies/DATACITE" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c06f1e" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.atlassian.com/" + "@id": "http://www.sparontologies.net/ontologies/datacite" + }, + "https://bioregistry.io/schema/#0000005": "AgentIdentifierScheme", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/datacite/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/DATACITE/2/datacite.owl" }, - "https://bioregistry.io/schema/#0000005": "andreadega/systems-biology-compiler", - "https://bioregistry.io/schema/#0000006": "https://bitbucket.org/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bitbucket.org/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/datacite/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bitbucket.org/andreadega/systems-biology-compiler" + "@id": "http://purl.org/spar/datacite/AgentIdentifierScheme" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bitbucket" + "@value": "datacite" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI", + "@id": "https://bioportal.bioontology.org/ontologies/MFOMD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RADLEX", + "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/metabolights", + "@id": "https://registry.identifiers.org/registry/mmp.db", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2344", + "@id": "https://fairsharing.org/FAIRsharing.pv0ezt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB", + "@id": "https://www.obofoundry.org/ontology/fovt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/dggr", + "@id": "https://bioregistry.io/registry/bfo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]", + "http://purl.org/dc/terms/description": "The upper level ontology upon which OBO Foundry ontologies are built.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kyoto Stock Center" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BFO-ontology/BFO" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Basic Formal Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genetic resource" + "@id": "http://www.ontobee.org/ontology/BFO" }, { - "@value": "drosophila" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo" }, { - "@value": "organism supplier" + "@id": "http://agroportal.lirmm.fr/ontologies/BFO" }, { - "@value": "genomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://kyotofly.kit.jp/cgi-bin/stocks/data_search.cgi" - }, - "https://bioregistry.io/schema/#0000005": "918902", - "https://bioregistry.io/schema/#0000006": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=918902" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dggr" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ehda", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/tccd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Cell Cycle DB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/tccd" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/BFO" + }, + { + "@id": "http://aber-owl.net/ontology/BFO" + }, + { + "@id": "https://www.obofoundry.org/ontology/bfo" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wcpd6f" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BFO" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "ontology" }, { - "@value": "protein" + "@value": "obo" }, { - "@value": "pathway" + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.itb.cnr.it/cellcycle" - }, - "https://bioregistry.io/schema/#0000005": "TP53", - "https://bioregistry.io/schema/#0000006": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=TP53" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tccd" - } - }, - { - "@id": "https://orcid.org/0000-0002-1297-9725", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Werner Müller" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wmueller@gbf.de" - } - }, - { - "@id": "https://bioregistry.io/registry/inn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Nonproprietary Names" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P2275" + "@id": "http://ifomis.org/bfo/" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.who.int/teams/health-product-and-policy-standards/inn" + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BFO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/bfo.owl" }, - "https://bioregistry.io/schema/#0000005": "fluticasone", - "https://bioregistry.io/schema/#0000006": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "INN_ID" + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/xpo" + }, + { + "@id": "https://bioregistry.io/registry/zp" + }, + { + "@id": "https://bioregistry.io/registry/pcl" + }, + { + "@id": "https://bioregistry.io/registry/ecocore" + }, + { + "@id": "https://bioregistry.io/registry/hso" + }, + { + "@id": "https://bioregistry.io/registry/cdno" + }, + { + "@id": "https://bioregistry.io/registry/duo" + }, + { + "@id": "https://bioregistry.io/registry/mco" + }, + { + "@id": "https://bioregistry.io/registry/rbo" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/aism" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/fovt" + }, + { + "@id": "https://bioregistry.io/registry/psdo" + }, + { + "@id": "https://bioregistry.io/registry/epio" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + }, + { + "@id": "https://bioregistry.io/registry/ado" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1384-116X" }, - "https://bioregistry.io/schema/#0000024": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BFO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=fluticasone" + "@id": "http://purl.obolibrary.org/obo/BFO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "inn" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dstf7h", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "bfo" } }, { - "@id": "https://bioregistry.io/registry/nucleotide", + "@id": "https://bioregistry.io/registry/kaggle", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.", + "http://purl.org/dc/terms/description": "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nucleotide" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/nucleotide" + "@value": "Kaggle" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100012705" + }, + { + "@id": "https://registry.identifiers.org/registry/kaggle" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/" + "@id": "https://kaggle.com" }, - "https://bioregistry.io/schema/#0000005": "880798137", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nuccore/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\.]+$", + "https://bioregistry.io/schema/#0000005": "nasa/kepler-exoplanet-search-results", + "https://bioregistry.io/schema/#0000006": "https://www.kaggle.com/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/insdc" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nuccore/", + "https://bioregistry.io/schema/#0000024": "https://www.kaggle.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nuccore/880798137" + "@id": "https://www.kaggle.com/nasa/kepler-exoplanet-search-results" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nucleotide" - } - }, - { - "@id": "https://registry.identifiers.org/registry/funderregistry", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "kaggle" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db", + "@id": "https://registry.bio2kg.org/resource/homologene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/snap", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype", + "@id": "https://fairsharing.org/FAIRsharing.3axym7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/WBLS", + "@id": "http://aber-owl.net/ontology/FIDEO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH", + "@id": "https://bioportal.bioontology.org/ontologies/TIME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ae8hpt", + "@id": "https://bioregistry.io/registry/fungorum", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "identifier for a fungus taxon in Index Fungorum", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Index Fungorum" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P1391" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.indexfungorum.org" + }, + "https://bioregistry.io/schema/#0000005": "154022", + "https://bioregistry.io/schema/#0000006": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=154022" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fungorum" } }, { - "@id": "https://bioregistry.io/registry/bmrb", + "@id": "https://bioregistry.io/registry/ttd.target", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.", + "http://purl.org/dc/terms/description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biological Magnetic Resonance Data Bank" + "@value": "TTD Target" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010191" + "@id": "https://registry.identifiers.org/registry/ttd.target" }, { - "@id": "https://registry.identifiers.org/registry/bmrb" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET" }, { - "@id": "https://fairsharing.org/FAIRsharing.p06nme" + "@id": "http://edamontology.org/data_2654" }, { - "@id": "https://www.uniprot.org/database/DB-0256" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "structural biology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bmrb.wisc.edu/" + "@id": "http://bidd.nus.edu.sg/group/ttd/ttd.asp" }, - "https://bioregistry.io/schema/#0000005": "15000", - "https://bioregistry.io/schema/#0000006": "http://rest.bmrb.wisc.edu/bmrb/$1/html", - "https://bioregistry.io/schema/#0000008": "^(bmr|bmse|bmst)?[0-9]{1,6}$", + "https://bioregistry.io/schema/#0000005": "TTDS00056", + "https://bioregistry.io/schema/#0000006": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1", + "https://bioregistry.io/schema/#0000008": "^TTDS\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bmrb:", + "https://bioregistry.io/schema/#0000024": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://rest.bmrb.wisc.edu/bmrb/15000/html" + "@id": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=TTDS00056" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bmrb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.78d3ad", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010774", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "ttd.target" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE", + "@id": "http://www.wikidata.org/entity/P1550", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/cath", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/cath.superfamily" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CATH Protein Structural Domain Superfamily" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://orcid.org/0000-0001-9439-5346", + "http://purl.org/dc/terms/contributor": [ { - "@id": "http://edamontology.org/data_2700" + "@id": "https://bioregistry.io/registry/sharkipedia.trait" }, { - "@id": "https://fairsharing.org/FAIRsharing.xgcyyn" + "@id": "https://bioregistry.io/registry/ribocentre" }, { - "@id": "https://registry.bio2kg.org/resource/cath" + "@id": "https://bioregistry.io/registry/uniprot.proteome" }, { - "@id": "https://registry.identifiers.org/registry/cath" + "@id": "https://bioregistry.io/registry/casspc" }, { - "@id": "https://www.re3data.org/repository/r3d100012629" + "@id": "https://bioregistry.io/registry/rnaloops" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH" + "@id": "https://bioregistry.io/registry/ccf" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/cordis.project" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/sharkipedia.species" }, { - "@value": "biology" + "@id": "https://bioregistry.io/registry/pdc.study" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/biofactoid" }, { - "@value": "classification" + "@id": "https://bioregistry.io/registry/phosphosite.sitegroup" }, { - "@value": "evolutionary biology" + "@id": "https://bioregistry.io/registry/sharkipedia.trend" + }, + { + "@id": "https://bioregistry.io/registry/bko" + }, + { + "@id": "https://bioregistry.io/registry/zenodo.record" + }, + { + "@id": "https://bioregistry.io/registry/nihreporter.project" + }, + { + "@id": "https://bioregistry.io/registry/emaps" + }, + { + "@id": "https://bioregistry.io/registry/cemo" + }, + { + "@id": "https://bioregistry.io/registry/signor.relation" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cathdb.info" - }, - "https://bioregistry.io/schema/#0000005": "1.10.8.10", - "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/cathnode/$1", - "https://bioregistry.io/schema/#0000008": "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/cathnode/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cathdb.info/cathnode/1.10.8.10" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cath" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vipr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.250a8c", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/MAMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://www.wikidata.org/entity/P352", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/inaturalist.taxon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for a species in iNaturalist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "iNaturalist Taxonomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P3151" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.inaturalist.org/taxa" - }, - "https://bioregistry.io/schema/#0000005": "21723", - "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/taxa/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/taxa/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.inaturalist.org/taxa/21723" + "@value": "Benjamin M. Gyori" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "inaturalist.taxon" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OGI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/iao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "benjamin_gyori@hms.harvard.edu" } }, { - "@id": "https://bioregistry.io/registry/to", + "@id": "https://bioregistry.io/registry/time", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to describe phenotypic traits in plants.", + "http://purl.org/dc/terms/description": "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Planteome/plant-trait-ontology" + "@id": "https://github.com/w3c/sdw/" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Trait Ontology" + "@value": "Time Ontology in OWL" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.w69t6r" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TO" - }, - { - "@id": "http://aber-owl.net/ontology/TO" - }, - { - "@id": "https://www.obofoundry.org/ontology/to" - }, - { - "@id": "https://registry.bio2kg.org/resource/pto" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/TO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PTO" + "@id": "https://fairsharing.org/FAIRsharing.hw3bh2" }, { - "@id": "http://www.ontobee.org/ontology/TO" + "@id": "https://bioportal.bioontology.org/ontologies/TIME" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/to" + "@id": "http://aber-owl.net/ontology/TIME" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "plant" - }, - { - "@value": "trait" - }, - { - "@value": "obo" - }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://browser.planteome.org/amigo" + "@id": "https://www.w3.org/TR/owl-time/" }, - "https://bioregistry.io/schema/#0000005": "0000630", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "DateTimeDescription", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2006/time#$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/to.owl" + "@id": "http://aber-owl.net/media/ontologies/TIME/2/time.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/agro" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1005-8383" + "@id": "https://orcid.org/0000-0002-3884-3420" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TO_", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2006/time#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/TO_0000630" + "@id": "http://www.w3.org/2006/time#DateTimeDescription" }, "https://bioregistry.io/schema/#0000029": { - "@value": "to" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "time" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wnk2eq", + "@id": "http://www.ontobee.org/ontology/GECKO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound", + "@id": "https://semanticscience.org/resource/CHEMINF_000446", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/registry/sty", + "@id": "https://bioregistry.io/registry/bgee.stage", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.", + "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UMLS Semantic Types Ontology" + "@value": "Bgee stage" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/STY" - }, - { - "@id": "http://ecoportal.lifewatch.eu/ontologies/STY" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage" }, { - "@id": "https://bioportal.bioontology.org/ontologies/STY" - }, + "@id": "https://registry.identifiers.org/registry/bgee.stage" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bgee.unil.ch/bgee/bgee" + }, + "https://bioregistry.io/schema/#0000005": "HsapDO:0000004", + "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1", + "https://bioregistry.io/schema/#0000008": "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=HsapDO:0000004" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bgee.stage" + } + }, + { + "@id": "https://registry.identifiers.org/registry/eu89h", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/panther.pthcmp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "http://www.wikidata.org/entity/P11955" + "@id": "https://bioregistry.io/registry/panther" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/STY" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lhncbc.nlm.nih.gov/semanticnetwork/" - }, - "https://bioregistry.io/schema/#0000005": "T039", - "https://bioregistry.io/schema/#0000006": "https://uts.nlm.nih.gov/uts/umls/semantic-network/$1", - "https://bioregistry.io/schema/#0000008": "^T\\d{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nfbd37b7f4f0847ebb98bf2d1b7f2fd90" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PANTHER Pathway Component" }, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "umls.sty" + "@id": "https://registry.identifiers.org/registry/panther.pthcmp" }, { - "@value": "UMLSSG" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp" }, { - "@value": "umls.st" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP" } ], - "https://bioregistry.io/schema/#0000024": "https://uts.nlm.nih.gov/uts/umls/semantic-network/", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pantherdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "P00266", + "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1", + "https://bioregistry.io/schema/#0000008": "^(G|P|U|C|S)\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://uts.nlm.nih.gov/uts/umls/semantic-network/T039" + "@id": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=P00266" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sty" + "@value": "panther.pthcmp" } }, { - "@id": "_:Nfbd37b7f4f0847ebb98bf2d1b7f2fd90", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "bioportal" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "support@bioontology.org" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD", + "@id": "https://registry.bio2kg.org/resource/viperdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-9415-5104", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Frederic Bastian" - }, - { - "@value": "Frédéric Bastian" - } - ], - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "frederic.bastian@unil.ch" - }, - { - "@value": "bgee@sib.swiss" - } - ] + "@id": "https://registry.identifiers.org/registry/protonet.proteincard", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } }, { - "@id": "https://registry.identifiers.org/registry/noncodev3", + "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/scoro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator).", + "@id": "https://bioregistry.io/metaregistry/biocontext/RESID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/scoro" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scholarly Contributions and Roles Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.c86b48" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/scoro" - }, - "https://bioregistry.io/schema/#0000005": "IntellectualContribution", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/scoro/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/scoro/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/scoro/IntellectualContribution" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scoro" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata", + "@id": "https://bioportal.bioontology.org/ontologies/TAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/unpd", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Universal Natural Products Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pkuxxj.pku.edu.cn/UNPD/" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "unpd" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf", + "@id": "https://www.obofoundry.org/ontology/spd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/CTENO", + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/nlx.anat", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXANAT covers anatomy terms. Almost all terms are also in Uberon.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroLex Anatomy" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "anatomy" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scicrunch.org/scicrunch/interlex/dashboard" - }, - "https://bioregistry.io/schema/#0000005": "090201", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_090201" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.anat" + "@id": "https://www.uniprot.org/database/DB-0180", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/bykdb", + "@id": "https://fairsharing.org/FAIRsharing.kg1x4z", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps", + "@id": "https://fairsharing.org/FAIRsharing.wpt5mp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/atcc", + "@id": "http://www.ontobee.org/ontology/MmusDv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB", + "@id": "https://www.obofoundry.org/ontology/labo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop", + "@id": "https://registry.bio2kg.org/resource/disprot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/imanis", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "@id": "http://aber-owl.net/ontology/FAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/metacyc.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/uniparc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0009-0009-3816-8777", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Imanis Life Sciences cell line products" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.imanislife.com/collections/cell-lines/" - }, - "https://bioregistry.io/schema/#0000005": "CL070", - "https://bioregistry.io/schema/#0000006": "https://www.imanislife.com/?s=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.imanislife.com/?s=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.imanislife.com/?s=CL070" + "@value": "Carsten Linder" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "imanis" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "info@hoelzel.de" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/RO", + "@id": "https://bioregistry.io/metaregistry/biocontext/MOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/clo", + "@id": "https://bioportal.bioontology.org/ontologies/XPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/amoebadb", + "@id": "https://www.obofoundry.org/ontology/fypo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/brenda", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AmoebaDB" + "@value": "BRENDA Enzyme" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB" + "@id": "https://registry.identifiers.org/registry/brenda" }, { - "@id": "https://registry.identifiers.org/registry/amoebadb" + "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda" }, { - "@id": "https://registry.bio2kg.org/resource/amoebadb" + "@id": "https://fairsharing.org/FAIRsharing.etp533" }, { - "@id": "https://www.re3data.org/repository/r3d100012457" + "@id": "https://www.re3data.org/repository/r3d100010616" }, { - "@id": "https://fairsharing.org/FAIRsharing.swbypy" + "@id": "https://registry.bio2kg.org/resource/brenda" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" - }, - { - "@value": "model organism" + "@value": "enzyme" }, { - "@value": "functional genomics" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://amoebadb.org/amoeba/" + "@id": "https://www.brenda-enzymes.org/" + }, + "https://bioregistry.io/schema/#0000005": "1.1.1.1", + "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1", + "https://bioregistry.io/schema/#0000008": "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/eccode" }, - "https://bioregistry.io/schema/#0000005": "EDI_244000", - "https://bioregistry.io/schema/#0000006": "https://amoebadb.org/amoeba/app/record/gene/$1", - "https://bioregistry.io/schema/#0000008": "^EDI_\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://amoebadb.org/amoeba/app/record/gene/", + "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://amoebadb.org/amoeba/app/record/gene/EDI_244000" + "@id": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=1.1.1.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "amoebadb" + "@value": "brenda" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX", + "@id": "https://www.obofoundry.org/ontology/fbdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://edamontology.org/data_1138", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/bgee.organ", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cazy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010585", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/eropmoscow", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5dnjs2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-2148-9135", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alan Bridge" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "alan.bridge@isb-sib.ch" + }, + { + "@value": "swisslipids@isb-sib.ch" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/glycoepitope", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.", + "http://purl.org/dc/terms/description": "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bgee organ" + "@value": "GlycoEpitope" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ" + "@id": "https://registry.identifiers.org/registry/glycoepitope" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope" }, { - "@id": "https://registry.identifiers.org/registry/bgee.organ" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bgee.unil.ch/bgee/bgee" + "@id": "https://www.glycoepitope.jp/epitopes/" }, - "https://bioregistry.io/schema/#0000005": "EHDAA:2185", - "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1", - "https://bioregistry.io/schema/#0000008": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=", + "https://bioregistry.io/schema/#0000005": "EP0311", + "https://bioregistry.io/schema/#0000006": "https://www.glycoepitope.jp/epitopes/$1", + "https://bioregistry.io/schema/#0000008": "^EP\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.glycoepitope.jp/epitopes/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=EHDAA:2185" + "@id": "https://www.glycoepitope.jp/epitopes/EP0311" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bgee.organ" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/zfa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "glycoepitope" } }, { - "@id": "https://bioregistry.io/registry/eccode", + "@id": "https://bioregistry.io/registry/vfb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.", + "http://purl.org/dc/terms/description": "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Enzyme Commission Code" + "@value": "Virtual Fly Brain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rfLD2u" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE" + "@id": "https://www.re3data.org/repository/r3d100011373" }, { - "@id": "https://www.re3data.org/repository/r3d100010803" + "@id": "https://fairsharing.org/FAIRsharing.nzaz6z" }, { - "@id": "https://registry.bio2kg.org/resource/intenz" - }, - { - "@id": "https://bartoc.org/en/node/671" - }, - { - "@id": "http://www.wikidata.org/entity/P591" - }, - { - "@id": "http://edamontology.org/data_1011" - }, - { - "@id": "https://www.uniprot.org/database/DB-0024" - }, - { - "@id": "https://registry.identifiers.org/registry/ec-code" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EC" + "@id": "https://registry.identifiers.org/registry/vfb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "enzymology" - }, - { - "@value": "enzyme" - }, - { - "@value": "biochemistry" + "@value": "neurobiology" }, { - "@value": "classification" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.enzyme-database.org/" + "@id": "https://VirtualFlyBrain.org" }, - "https://bioregistry.io/schema/#0000005": "1.1.1.1", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$", + "https://bioregistry.io/schema/#0000005": "00000001", + "https://bioregistry.io/schema/#0000006": "http://virtualflybrain.org/reports/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z]{8}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3889-2879" + "@id": "https://orcid.org/0000-0002-0173-9080" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "EC" - }, - { - "@value": "ECCODE" - }, - { - "@value": "EC number" - }, - { - "@value": "ec-code" - }, - { - "@value": "intenz" - }, - { - "@value": "EC-CODE" - }, - { - "@value": "EC_CODE" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=", + "https://bioregistry.io/schema/#0000024": "http://virtualflybrain.org/reports/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1.1.1.1" + "@id": "http://virtualflybrain.org/reports/00000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eccode" + "@value": "vfb" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy", + "@id": "http://aber-owl.net/ontology/PPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/ubprop", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Uberon Property" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "UBREL" - }, - { - "@value": "UBPROP" - } - ], - "https://bioregistry.io/schema/#0000029": { - "@value": "ubprop" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/drks", + "@id": "https://bioregistry.io/registry/pharmacodb.cell", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)", + "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "German Clinical Trials Register" + "@value": "PharmacoDB Cells" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://drks.de" + "@id": "https://pharmacodb.ca/cell_lines" }, - "https://bioregistry.io/schema/#0000005": "DRKS00031815", - "https://bioregistry.io/schema/#0000006": "https://drks.de/search/en/trial/$1", - "https://bioregistry.io/schema/#0000008": "^DRKS\\d+$", + "https://bioregistry.io/schema/#0000005": "22RV1_12_2019", + "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/cell_lines/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://drks.de/search/en/trial/", + "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/cell_lines/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://drks.de/search/en/trial/DRKS00031815" + "@id": "https://pharmacodb.ca/cell_lines/22RV1_12_2019" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drks" + "@value": "pharmacodb.cell" } }, { - "@id": "https://bioregistry.io/registry/nbrc", + "@id": "https://bioregistry.io/registry/insdc.cds", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.", + "http://purl.org/dc/terms/description": "The coding sequence or protein identifiers as maintained in INSDC.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NITE Biological Resource Center" + "@value": "INSDC CDS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/nbrc" - }, - { - "@id": "https://registry.bio2kg.org/resource/nbrc" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ftamrc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "taxonomy" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS" }, { - "@value": "microbial" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds" }, { - "@value": "microbiology" + "@id": "https://registry.identifiers.org/registry/insdc.cds" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nbrc.nite.go.jp/e/index.html" + "@id": "http://getentry.ddbj.nig.ac.jp" }, - "https://bioregistry.io/schema/#0000005": "00001234", - "https://bioregistry.io/schema/#0000006": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "AAA35559", + "https://bioregistry.io/schema/#0000006": "http://getentry.ddbj.nig.ac.jp/getentry/dad/$1", + "https://bioregistry.io/schema/#0000008": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=", + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/ncbiprotein" + }, + "https://bioregistry.io/schema/#0000024": "http://getentry.ddbj.nig.ac.jp/getentry/dad/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00001234" + "@id": "http://getentry.ddbj.nig.ac.jp/getentry/dad/AAA35559" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nbrc" + "@value": "insdc.cds" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO", + "@id": "http://aber-owl.net/ontology/NPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.glycan", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/drugbank.metabolite", + "@id": "https://bioregistry.io/registry/nlm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Metabolites in drugbank", + "http://purl.org/dc/terms/description": "Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Metabolite" + "@value": "National Library of Medicine Catalog" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID" + }, + { + "@id": "https://bartoc.org/en/node/528" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://go.drugbank.com" + "@id": "https://www.ncbi.nlm.nih.gov/nlmcatalog" }, - "https://bioregistry.io/schema/#0000005": "DBMET02292", - "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/metabolites/$1", - "https://bioregistry.io/schema/#0000008": "^DBMET\\d+$", + "https://bioregistry.io/schema/#0000005": "101775319", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/metabolites/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nlmcatalog/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://go.drugbank.com/metabolites/DBMET02292" + "@id": "https://www.ncbi.nlm.nih.gov/nlmcatalog/101775319" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.metabolite" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "http://aber-owl.net/ontology/CRYOEM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "nlm" } }, { - "@id": "http://aber-owl.net/ontology/OPMI", + "@id": "https://registry.identifiers.org/registry/encode", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EFO", + "@id": "https://bioportal.bioontology.org/ontologies/OMRSE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/depod", + "@id": "https://bioregistry.io/registry/exac.variant", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.", + "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Dephosphorylation Database" + "@value": "ExAC Variant" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011936" - }, - { - "@id": "https://www.uniprot.org/database/DB-0190" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT" }, { - "@id": "https://registry.identifiers.org/registry/depod" + "@id": "https://registry.identifiers.org/registry/exac.variant" }, { - "@id": "https://fairsharing.org/FAIRsharing.q9j2e3" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.depod.bioss.uni-freiburg.de" - }, - "https://bioregistry.io/schema/#0000005": "PTPN1", - "https://bioregistry.io/schema/#0000006": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/hgnc.symbol" + "@id": "http://exac.broadinstitute.org/" }, + "https://bioregistry.io/schema/#0000005": "22-46615880-T-C", + "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/variant/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3562-7869" - }, - "https://bioregistry.io/schema/#0000024": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=", + "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/variant/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=PTPN1" + "@id": "http://exac.broadinstitute.org/variant/22-46615880-T-C" }, "https://bioregistry.io/schema/#0000029": { - "@value": "depod" + "@value": "exac.variant" } }, { - "@id": "https://registry.identifiers.org/registry/compulyeast", + "@id": "http://edamontology.org/data_1187", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/vita", + "@id": "https://registry.bio2kg.org/resource/tgma", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qp211a", + "@id": "https://bioportal.bioontology.org/ontologies/OPB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/mampol", + "@id": "https://bioregistry.io/registry/insdc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches).", + "http://purl.org/dc/terms/description": "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mammalia Polymorphism Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/mampol" + "@value": "Nucleotide Sequence Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc" + }, + { + "@id": "https://registry.bio2kg.org/resource/insdc" + }, + { + "@id": "https://registry.identifiers.org/registry/insdc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC" + } + ], "http://www.w3.org/ns/dcat#keyword": { "@value": "dna" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mampol.uab.es" + "@id": "https://www.ncbi.nlm.nih.gov/Genbank/" }, - "https://bioregistry.io/schema/#0000005": "MAMpol005339", - "https://bioregistry.io/schema/#0000006": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1", + "https://bioregistry.io/schema/#0000005": "X58356", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nuccore/$1", + "https://bioregistry.io/schema/#0000008": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nuccore/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=MAMpol005339" + "@id": "https://www.ncbi.nlm.nih.gov/nuccore/X58356" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mampol" + "@value": "insdc" } }, { - "@id": "http://www.ontobee.org/ontology/ExO", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.identifiers.org/registry/metatlas", + "@id": "https://fairsharing.org/FAIRsharing.fgd5gq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://edamontology.org/data_2664", + "@id": "https://bioportal.bioontology.org/ontologies/CIDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BFO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.pfg82t", + "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/perkinelmer", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-8151-7479", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PerkinElmer cell line collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.perkinelmer.com/" - }, - "https://bioregistry.io/schema/#0000005": "SCC111", - "https://bioregistry.io/schema/#0000006": "https://www.perkinelmer.com/searchresult?searchName=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.perkinelmer.com/searchresult?searchName=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.perkinelmer.com/searchresult?searchName=SCC111" + "@value": "Raymond Lee" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "perkinelmer" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ez2nhb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "raymond@caltech.edu" } }, { - "@id": "http://www.wikidata.org/entity/P2892", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://orcid.org/0000-0002-7558-2880", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jesualdo Tomás Fernández-Breis" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jfernand@um.es" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_356", + "@id": "https://registry.identifiers.org/registry/drs.anv0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/bitterdb.cpd", + "@id": "https://bioregistry.io/registry/mediadive.ingredient", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.", + "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BitterDB Compound" + "@value": "MediaDive Ingredient" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd" - }, - { - "@id": "https://registry.identifiers.org/registry/bitterdb.cpd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bitterdb.agri.huji.ac.il/dbbitter.php" + "@id": "https://mediadive.dsmz.de/solutions" }, - "https://bioregistry.io/schema/#0000005": "46", - "https://bioregistry.io/schema/#0000006": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1", + "https://bioregistry.io/schema/#0000005": "13", + "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/ingredients/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=46" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bitterdb.cpd" - } - }, - { - "@id": "https://bioregistry.io/registry/lncipedia", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive compendium of human long non-coding RNAs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LNCipedia" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.84c1a7" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3909-7201" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lncipedia.org" + "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/ingredients/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mediadive.dsmz.de/ingredients/13" }, - "https://bioregistry.io/schema/#0000005": "SNHG3", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { - "@value": "lncipedia" + "@value": "mediadive.ingredient" } }, { - "@id": "https://bioregistry.io/registry/rtecs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments.", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Registry of Toxic Effects of Chemical Substances" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://semanticscience.org/resource/CHEMINF_000566" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cdc.gov/niosh/rtecs/" - }, - "https://bioregistry.io/schema/#0000005": "AB1925000", - "https://bioregistry.io/schema/#0000008": "^AB\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "rtecs" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.bio2kg.org/resource/roleo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/odrl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model.", + "@id": "http://www.ontobee.org/ontology/VBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Digital Rights Language Ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/ns/odrl/2" - }, - "https://bioregistry.io/schema/#0000005": "assetConcepts", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/odrl/2/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/odrl/2/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/odrl/2/assetConcepts" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "odrl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bv0zjz", + "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/hoip", + "@id": "https://bioregistry.io/registry/sasap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes.", + "http://purl.org/dc/terms/description": "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/yuki-yamagata/hoip" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Homeostasis imbalance process ontology" + "@value": "The State of Alaska's Salmon and People Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/HOIP" + "@id": "http://aber-owl.net/ontology/SASAP" }, { - "@id": "http://aber-owl.net/ontology/HOIP" + "@id": "https://bioportal.bioontology.org/ontologies/SASAP" } ], "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://knowledge.brc.riken.jp/bioresource/ontology/HOIP" + "@id": "https://github.com/DataONEorg/sem-prov-ontologies" }, - "https://bioregistry.io/schema/#0000005": "0040379", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/HOIP/HOIP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "00000101", + "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/SASAP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/yuki-yamagata/hoip/raw/master/hoip_0308.owl" + "@id": "http://aber-owl.net/media/ontologies/SASAP/2/sasap.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9673-1283" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0002-0381-3766" }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/HOIP/HOIP_", + "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/SASAP_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/HOIP/HOIP_0040379" + "@id": "https://purl.dataone.org/odo/SASAP_00000101" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hoip" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/narcis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "sasap" } }, { - "@id": "https://orcid.org/0000-0002-1595-3213", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/aeon" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Philip Strömert" - }, + "@id": "https://orcid.org/0000-0001-9189-9661", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Yongqunh He" + }, + { + "@value": "Yongqun Oliver He" + } + ], "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Philip.Stroemert@tib.eu" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3201", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bacmap.map", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1gr4tz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/ATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "yongqunh@med.umich.edu" } }, { - "@id": "https://www.obofoundry.org/ontology/mao", + "@id": "https://bioregistry.io/metaregistry/biocontext/oa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ird.segment", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/geno", + "@id": "https://bioregistry.io/registry/msio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013", + "http://purl.org/dc/terms/description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/GENO-ontology" + "@id": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genotype Ontology" + "@value": "Metabolomics Standards Initiative Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kpbna7" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENO" - }, - { - "@id": "http://aber-owl.net/ontology/GENO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GENO" - }, - { - "@id": "http://www.ontobee.org/ontology/GENO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio" }, { - "@id": "https://www.obofoundry.org/ontology/geno" + "@id": "https://fairsharing.org/FAIRsharing.4c7f91" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "omics" }, { "@value": "ontology" }, { - "@value": "genomics" + "@value": "metabolomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/monarch-initiative/GENO-ontology/" + "@id": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" }, - "https://bioregistry.io/schema/#0000005": "0000632", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GENO_$1", + "https://bioregistry.io/schema/#0000005": "0000111", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MSIO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/geno.owl" + "@id": "https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1048-5019" + "@id": "https://orcid.org/0000-0001-9853-5668" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GENO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MSIO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GENO_0000632" + "@id": "http://purl.obolibrary.org/obo/MSIO_0000111" }, "https://bioregistry.io/schema/#0000029": { - "@value": "geno" + "@value": "msio" } }, { - "@id": "https://bioregistry.io/registry/nmdc", + "@id": "https://bioregistry.io/registry/cmecs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.", + "http://purl.org/dc/terms/description": "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Microbiome Data Collaborative" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/nmdc" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "microbiome" + "@value": "Costal and Marine Ecological Classification Standard" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "marine ecology" + }, + { + "@value": "ecology" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://microbiomedata.org/" + "@id": "https://cmecscatalog.org/cmecs" }, - "https://bioregistry.io/schema/#0000005": "y3ax-8bq3-60", - "https://bioregistry.io/schema/#0000006": "https://drs.microbiomedata.org/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[\\w\\-.]{3,}$", + "https://bioregistry.io/schema/#0000005": "595", + "https://bioregistry.io/schema/#0000006": "https://cmecscatalog.org/cmecs/classification/unit/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8424-0604" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://drs.microbiomedata.org/objects/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cmecs:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://drs.microbiomedata.org/objects/y3ax-8bq3-60" + "@id": "https://cmecscatalog.org/cmecs/classification/unit/595.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nmdc" + "@value": "cmecs" } }, { - "@id": "https://bioregistry.io/registry/tigrfam", + "@id": "https://bioregistry.io/registry/linkml", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.", + "http://purl.org/dc/terms/description": "Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/linkml/" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TIGR protein families" + "@value": "LinkML" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam" - }, - { - "@id": "http://edamontology.org/data_1141" - }, - { - "@id": "https://registry.bio2kg.org/resource/tigrfams" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM" - }, + "@id": "https://fairsharing.org/FAIRsharing.cb7086" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM" + "@value": "ontology and terminology" }, { - "@id": "https://registry.identifiers.org/registry/tigrfam" + "@value": "data integration" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi" + "@id": "https://linkml.io/linkml-model/docs/SchemaDefinition/" }, - "https://bioregistry.io/schema/#0000005": "TIGR00010", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/cdd?term=$1", - "https://bioregistry.io/schema/#0000008": "^TIGR\\d+$", + "https://bioregistry.io/schema/#0000005": "SchemaDefinition", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/linkml/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/cdd?term=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/linkml/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/cdd?term=TIGR00010" + "@id": "https://w3id.org/linkml/SchemaDefinition" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tigrfam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010544", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "linkml" } }, { - "@id": "https://bioregistry.io/registry/lipro", + "@id": "https://bioregistry.io/registry/ardb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology representation of the LIPIDMAPS nomenclature classification.", + "http://purl.org/dc/terms/description": "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lipid Ontology" + "@value": "Antibiotic Resistance Genes Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/LIPRO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO" - }, - { - "@id": "https://www.obofoundry.org/ontology/lipro" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LIPRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/ardb" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb" } ], - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LIPRO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/LIPRO/4/lipro.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ardb.cbcb.umd.edu/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4004-6479" + "https://bioregistry.io/schema/#0000005": "CAE46076", + "https://bioregistry.io/schema/#0000006": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z_]{3}[0-9]{4,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=CAE46076" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LIPRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "lipro" + "@value": "ardb" } }, { - "@id": "https://bioregistry.io/registry/vmhmetabolite", + "@id": "https://fairsharing.org/FAIRsharing.9rhr9j", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/psipar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/affy.probeset", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/bcbc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", + "http://purl.org/dc/terms/description": "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VMH metabolite" + "@value": "Beta Cell Biology Consortium" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE" + "@value": "embryonic stem cell" }, { - "@id": "https://registry.identifiers.org/registry/vmhmetabolite" + "@value": "protocol" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vmh.life/" - }, - "https://bioregistry.io/schema/#0000005": "h2o", - "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#metabolite/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#metabolite/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.vmh.life/#metabolite/h2o" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vmhmetabolite" - } - }, - { - "@id": "https://bioregistry.io/registry/fbbt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of Drosophila melanogaster anatomy.", - "http://purl.org/dc/terms/isPartOf": [ + "@value": "pancreatic development" + }, { - "@id": "https://bioregistry.io/registry/flybase" + "@value": "cell reprogramming" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FlyBase/drosophila-anatomy-developmental-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drosophila gross anatomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@value": "cell replacement" + }, { - "@id": "https://www.obofoundry.org/ontology/fbbt" + "@value": "pancreatic islet" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt" + "@value": "gene" }, { - "@id": "https://fairsharing.org/FAIRsharing.y2qkst" + "@value": "gene expression" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt" + "@value": "mouse embryonic stem cell line" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt" + "@value": "basic science" }, { - "@id": "http://www.ontobee.org/ontology/FBbt" + "@value": "cell regeneration" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-BT" + "@value": "mouse strain" }, { - "@id": "http://aber-owl.net/ontology/FBBT" + "@value": "adenovirus" }, { - "@id": "https://registry.bio2kg.org/resource/fbbt" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "beta cell" + }, { - "@value": "fly" + "@value": "pancreatic islet development" }, { - "@value": "developmental biology" + "@value": "antibody" }, { - "@value": "obo" + "@value": "pancreatic islet function" }, { - "@value": "ontology" + "@value": "pancreas" }, { - "@value": "anatomy" + "@value": "basic research" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/fbbt" - }, - "https://bioregistry.io/schema/#0000005": "00007294", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBbt_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fbbt.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1373-1705" - }, - "https://bioregistry.io/schema/#0000023": [ + "@value": "data sharing" + }, { - "@value": "FBbt" + "@value": "functional genomics" }, { - "@value": "FBbt_root" + "@value": "cell line" + }, + { + "@value": "genomics" + }, + { + "@value": "mouse" + }, + { + "@value": "embryonic stem cell line" + }, + { + "@value": "data set" } ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBbt_", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.betacell.org/" + }, + "https://bioregistry.io/schema/#0000005": "4623", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:BCBC_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:BCBC_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FBbt_00007294" + "@id": "https://scicrunch.org/resolver/RRID:BCBC_4623" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fbbt" + "@value": "bcbc" } }, { - "@id": "https://bioregistry.io/registry/ncbi.assembly", + "@id": "https://fairsharing.org/FAIRsharing.fcwyhz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/glycopost", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.", + "http://purl.org/dc/terms/description": "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Assembly" + "@value": "GlycoPOST" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/assembly" + "@id": "https://fairsharing.org/FAIRsharing.2y1KMt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly" + "@id": "https://registry.identifiers.org/registry/glycopost" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" }, { - "@id": "https://www.re3data.org/repository/r3d100012688" + "@value": "glycomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/" + "@id": "https://glycopost.glycosmos.org" }, - "https://bioregistry.io/schema/#0000005": "GCF_000005845.2", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/datasets/genome/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\.]+$", + "https://bioregistry.io/schema/#0000005": "GPST000024", + "https://bioregistry.io/schema/#0000006": "https://glycopost.glycosmos.org/entry/$1", + "https://bioregistry.io/schema/#0000008": "^GPST[0-9]{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/datasets/genome/", + "https://bioregistry.io/schema/#0000024": "https://glycopost.glycosmos.org/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2" + "@id": "https://glycopost.glycosmos.org/entry/GPST000024" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbi.assembly" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/signaling-gateway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "glycopost" } }, { - "@id": "https://www.re3data.org/repository/r3d100011521", + "@id": "https://www.obofoundry.org/ontology/plana", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE", + "@id": "http://www.ontobee.org/ontology/CDNO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.stage", + "@id": "http://www.wikidata.org/entity/P244", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/bacmap.map", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.", + "@id": "https://bioregistry.io/registry/propreo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A comprehensive proteomics data and process provenance ontology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BacMap Map" + "@value": "Proteomics data and process provenance" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map" + "@id": "https://registry.bio2kg.org/resource/propreo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP" + "@id": "http://aber-owl.net/ontology/PROPREO" }, { - "@id": "https://registry.identifiers.org/registry/bacmap.map" + "@id": "https://www.obofoundry.org/ontology/propreo" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PROPREO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "owl" + }, + { + "@value": "ontology" + }, + { + "@value": "proteomics" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bacmap.wishartlab.com/" + "@id": "http://lsdis.cs.uga.edu/projects/glycomics/propreo/" }, - "https://bioregistry.io/schema/#0000005": "AP011135", - "https://bioregistry.io/schema/#0000006": "http://bacmap.wishartlab.com/maps/$1/index.html", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\_)?\\d+(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bacmap.map:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bacmap.wishartlab.com/maps/AP011135/index.html" + "https://bioregistry.io/schema/#0000005": "protein", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PROPREO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/PROPREO/2/propreo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9190-4256" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PROPREO_", "https://bioregistry.io/schema/#0000029": { - "@value": "bacmap.map" + "@value": "propreo" } }, { - "@id": "https://registry.identifiers.org/registry/re3data", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICO", + "@id": "https://registry.bio2kg.org/resource/esldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS", + "@id": "https://registry.bio2kg.org/resource/imotdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/peptideatlas.dataset", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.", + "@id": "https://www.re3data.org/repository/r3d100010527", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PeptideAtlas Dataset" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary" - }, - "https://bioregistry.io/schema/#0000005": "PASS01237", - "https://bioregistry.io/schema/#0000006": "http://www.peptideatlas.org/PASS/$1", - "https://bioregistry.io/schema/#0000008": "^PASS\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.peptideatlas.org/PASS/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.peptideatlas.org/PASS/PASS01237" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "peptideatlas.dataset" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://edamontology.org/data_1098", + "@id": "http://www.ontobee.org/ontology/FBbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/uniprot.var", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/uniprot" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Variants" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://web.expasy.org/variant_pages" - }, - "https://bioregistry.io/schema/#0000005": "068078", - "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/annotation/VAR_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "UPVAR" - }, - { - "@value": "UniProtKB_VAR" - }, - { - "@value": "SP_VAR" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/annotation/VAR_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.uniprot.org/annotation/VAR_068078" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.var" + "@id": "https://www.re3data.org/repository/r3d100010650", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOAF", + "@id": "https://registry.identifiers.org/registry/ecyano.entity", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/uspto", + "@id": "https://www.re3data.org/repository/r3d100012273", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3J6NYn", + "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73", + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/drugbank.bioentity", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/drugbank" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Target v4" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET" - }, - { - "@id": "https://registry.identifiers.org/registry/drugbankv4.target" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.drugbank.ca/targets" - }, - "https://bioregistry.io/schema/#0000005": "BE0000048", - "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/bio_entities/$1", - "https://bioregistry.io/schema/#0000008": "^BE\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "drugbankv4.target" - }, - { - "@value": "drugbank.target" - } - ], - "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/bio_entities/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://go.drugbank.com/bio_entities/BE0000048" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.bioentity" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.re3data.org/repository/r3d100010129", + "@id": "https://fairsharing.org/FAIRsharing.w9jvbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0003-2338-8872", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fernanda Farinelli" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "fernanda.farinelli@gmail.com" + "@id": "https://www.obofoundry.org/ontology/obib", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://orcid.org/0000-0002-0358-0130", + "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/seinet", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A vocabulary about species to support the environmental research community in Arizona and New Mexico", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Martin Ramirez" + "@value": "Southwestern Environmental Information Network" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ramirez@macn.gov.ar" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P6209" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://swbiodiversity.org/seinet/index.php" + }, + "https://bioregistry.io/schema/#0000005": "762", + "https://bioregistry.io/schema/#0000006": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0002-8169-9049" + }, + "https://bioregistry.io/schema/#0000024": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=762" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "seinet" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND", + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/cath.domain", + "@id": "https://bioregistry.io/registry/glygen", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.", + "http://purl.org/dc/terms/description": "GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CATH domain" + "@value": "Computational and Informatics Resources for Glycoscience" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_1040" + "@id": "https://www.uniprot.org/database/DB-0254" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain" - }, + "@id": "https://fairsharing.org/FAIRsharing.aI1J5W" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/cath.domain" + "@value": "life science" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN" + "@value": "glycomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cathdb.info/" + "@id": "https://glygen.org/glycan/" }, - "https://bioregistry.io/schema/#0000005": "1cukA01", - "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/domain/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "G24361QY", + "https://bioregistry.io/schema/#0000006": "https://glygen.org/glycan/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/domain/", + "https://bioregistry.io/schema/#0000024": "https://glygen.org/glycan/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cathdb.info/domain/1cukA01" + "@id": "https://glygen.org/glycan/G24361QY" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cath.domain" + "@value": "glygen" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio", + "@id": "https://registry.identifiers.org/registry/dip", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/ttd.target", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco", + "@id": "https://bioregistry.io/metaregistry/biocontext/JCM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE", + "@id": "https://www.re3data.org/repository/r3d100010191", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/img.taxon", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/miriam.resource", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/omiabis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.", + "http://purl.org/dc/terms/description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OMIABIS/omiabis-dev" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Microbial Genomes Taxon" + "@value": "Ontologized MIABIS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/img.taxon" + "@id": "http://aber-owl.net/ontology/OMIABIS" }, { - "@id": "https://registry.bio2kg.org/resource/img.taxon" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON" + "@id": "http://www.ontobee.org/ontology/OMIABIS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis" + }, + { + "@id": "https://www.obofoundry.org/ontology/omiabis" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "ontology" }, { - "@value": "taxonomy" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://img.jgi.doe.gov/" + "@id": "https://github.com/OMIABIS/omiabis-dev" }, - "https://bioregistry.io/schema/#0000005": "648028003", - "https://bioregistry.io/schema/#0000006": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=648028003" + "https://bioregistry.io/schema/#0000005": "0001079", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMIABIS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/omiabis.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/labo" }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1834-3856" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMIABIS_", "https://bioregistry.io/schema/#0000029": { - "@value": "img.taxon" + "@value": "omiabis" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro", + "@id": "https://bioregistry.io/registry/knapsack", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KNApSAcK" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack" + }, + { + "@id": "https://registry.identifiers.org/registry/knapsack" + }, + { + "@id": "http://www.wikidata.org/entity/P2064" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.knapsackfamily.com/KNApSAcK/" + }, + "https://bioregistry.io/schema/#0000005": "C00000001", + "https://bioregistry.io/schema/#0000006": "http://www.knapsackfamily.com/knapsack_core/information.php?word=$1", + "https://bioregistry.io/schema/#0000008": "^C\\d{8}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.knapsackfamily.com/knapsack_core/information.php?word=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.knapsackfamily.com/knapsack_core/information.php?word=C00000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "knapsack" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/antweb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-6579-6941", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yasset Perez-Riverol" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "yperez@ebi.ac.uk" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-1509-4981", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matúš Kalaš" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "matus.kalas@uib.no" + "@id": "https://fairsharing.org/FAIRsharing.g7jbvn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab", + "@id": "https://registry.bio2kg.org/resource/kegg.drug", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/viralzone", + "@id": "https://registry.identifiers.org/registry/gabi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature", + "@id": "https://registry.identifiers.org/registry/envo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/vsdb", + "@id": "https://bioregistry.io/registry/rgap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.", + "http://purl.org/dc/terms/description": "This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Veterinary Substances DataBase" + "@value": "Rice Genome Annotation Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/rgap" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "genome" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sitem.herts.ac.uk/aeru/vsdb" + "@id": "http://rice.plantbiology.msu.edu/" }, - "https://bioregistry.io/schema/#0000005": "1868", - "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vsdb:", + "https://bioregistry.io/schema/#0000005": "LOC_Os02g13300", + "https://bioregistry.io/schema/#0000006": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/1868.htm" + "@id": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=LOC_Os02g13300" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vsdb" + "@value": "rgap" } }, { - "@id": "https://orcid.org/0000-0002-9134-5404", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Patrice Buche" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "patrice.buche@inrae.fr" + "@id": "https://registry.identifiers.org/registry/ps", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0003-1834-3856", + "@id": "http://aber-owl.net/ontology/SEP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/scopus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mathias Brochhausen" + "@value": "Scopus Researcher" }, - "http://xmlns.com/foaf/0.1/mbox": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "mbrochhausen@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.0a674c" }, { - "@value": "mbrochhausen@uams.edu" + "@id": "http://www.wikidata.org/entity/P1153" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID" } - ] + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.scopus.com" + }, + "https://bioregistry.io/schema/#0000005": "56305849200", + "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/authid/detail.uri?authorId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "scopus.author" + }, + "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/authid/detail.uri?authorId=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.scopus.com/authid/detail.uri?authorId=56305849200" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scopus" + } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID", + "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/arraymap", + "@id": "https://bioregistry.io/registry/pass2", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.", + "http://purl.org/dc/terms/description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ArrayMap" + "@value": "Protein Alignment organised as Structural Superfamily" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012630" + "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2" }, { - "@id": "https://registry.identifiers.org/registry/arraymap" + "@id": "https://registry.bio2kg.org/resource/pass2" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2" }, { - "@id": "https://fairsharing.org/FAIRsharing.1fbc5y" + "@id": "https://registry.identifiers.org/registry/pass2" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "structure" }, { - "@value": "biomedical science" + "@value": "genome" }, { - "@value": "life science" + "@value": "dna" }, { - "@value": "bioinformatics" + "@value": "classification" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.arraymap.org" - }, - "https://bioregistry.io/schema/#0000005": "icdom:8500_3", - "https://bioregistry.io/schema/#0000006": "https://www.arraymap.org/pgx:$1", - "https://bioregistry.io/schema/#0000008": "^[\\w\\-:,]{3,64}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9903-4248" + "@id": "http://caps.ncbs.res.in/pass2" }, - "https://bioregistry.io/schema/#0000024": "https://www.arraymap.org/pgx:", + "https://bioregistry.io/schema/#0000005": "46977", + "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.arraymap.org/pgx:icdom:8500_3" + "@id": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=46977" }, "https://bioregistry.io/schema/#0000029": { - "@value": "arraymap" + "@value": "pass2" } }, { - "@id": "https://orcid.org/0000-0002-2548-641X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sirarat Sarntivijai" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "siiraa@umich.edu" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC", + "@id": "https://registry.bio2kg.org/resource/arxiv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.uniprot.org/database/DB-0141", + "@id": "https://registry.bio2kg.org/resource/rhea", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/ppdb", + "@id": "http://aber-owl.net/ontology/SO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/tgd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. ", + "http://purl.org/dc/terms/description": "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pesticide Properties DataBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.7k8zh0" + "@value": "Tetrahymena Genome Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd" + }, + { + "@id": "https://registry.identifiers.org/registry/tgd" + }, + { + "@id": "https://registry.bio2kg.org/resource/tgd" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD" + } + ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" + "@value": "genome" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sitem.herts.ac.uk/aeru/ppdb/" + "@id": "http://ciliate.org/index.php/" }, - "https://bioregistry.io/schema/#0000005": "1484", - "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "TTHERM_00648910", + "https://bioregistry.io/schema/#0000006": "http://ciliate.org/index.php/feature/details/$1", + "https://bioregistry.io/schema/#0000008": "^TTHERM\\_\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9667-0572" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ppdb:", + "https://bioregistry.io/schema/#0000024": "http://ciliate.org/index.php/feature/details/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/1484.htm" + "@id": "http://ciliate.org/index.php/feature/details/TTHERM_00648910" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ppdb" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oryzabase.strain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/taxrank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ncro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "tgd" } }, { - "@id": "https://bioregistry.io/registry/nbn", + "@id": "https://bioregistry.io/registry/mesh.2012", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.", + "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Bibliography Number" + "@value": "MeSH 2012" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012" }, { - "@id": "https://registry.identifiers.org/registry/nbn" + "@id": "https://registry.identifiers.org/registry/mesh.2012" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBN" + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://nbn-resolving.org/resolve_urn.htm" + "@id": "http://www.nlm.nih.gov/mesh/" + }, + "https://bioregistry.io/schema/#0000005": "17186", + "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/mesh" }, - "https://bioregistry.io/schema/#0000005": "urn:nbn:fi:tkk-004781", - "https://bioregistry.io/schema/#0000006": "http://nbn-resolving.org/resolver?identifier=$1&verb=redirect", - "https://bioregistry.io/schema/#0000008": "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/nbn:", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mesh.2012:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://nbn-resolving.org/resolver?identifier=urn:nbn:fi:tkk-004781&verb=redirect" + "@id": "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=17186&view=expanded" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nbn" + "@value": "mesh.2012" } }, { - "@id": "https://bioregistry.io/registry/iuphar.receptor", + "@id": "https://www.re3data.org/repository/r3d100010566", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/nbrc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.", + "http://purl.org/dc/terms/description": "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Guide to Pharmacology Target" + "@value": "NITE Biological Resource Center" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P5458" + "@id": "https://registry.identifiers.org/registry/nbrc" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR" + "@id": "https://fairsharing.org/FAIRsharing.ftamrc" }, { - "@id": "https://www.uniprot.org/database/DB-0182" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor" + "@id": "https://registry.bio2kg.org/resource/nbrc" }, { - "@id": "https://registry.identifiers.org/registry/iuphar.receptor" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR" + "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.guidetopharmacology.org/targets.jsp" - }, - "https://bioregistry.io/schema/#0000005": "101", - "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "IUPHARobj" + "@value": "microbial" }, { - "@value": "IUPHAR_GPCR" + "@value": "taxonomy" + }, + { + "@value": "microbiology" } ], - "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.nbrc.nite.go.jp/e/index.html" + }, + "https://bioregistry.io/schema/#0000005": "00001234", + "https://bioregistry.io/schema/#0000006": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=101" + "@id": "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=00001234" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iuphar.receptor" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OARCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "nbrc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69", + "@id": "https://bioregistry.io/registry/aop.events", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AOPWiki (Key Event)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/aop.events" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://aopwiki.org/" + }, + "https://bioregistry.io/schema/#0000005": "3", + "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/events/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/events/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://aopwiki.org/events/3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "aop.events" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/pdro", + "@id": "https://bioregistry.io/registry/oostt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to describe entities related to prescription of drugs", + "http://purl.org/dc/terms/description": "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenLHS/PDRO" + "@id": "https://github.com/OOSTT/OOSTT" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Prescription of Drugs Ontology" + "@value": "Ontology of Organizational Structures of Trauma centers and Trauma systems" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO" + "@id": "http://aber-owl.net/ontology/OOSTT" }, { - "@id": "http://aber-owl.net/ontology/PDRO" + "@id": "https://bioportal.bioontology.org/ontologies/OOSTT" }, { - "@id": "https://fairsharing.org/FAIRsharing.9te3ev" + "@id": "https://fairsharing.org/FAIRsharing.b4sa0w" }, { - "@id": "https://www.obofoundry.org/ontology/pdro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt" }, { - "@id": "http://www.ontobee.org/ontology/PDRO" + "@id": "https://www.obofoundry.org/ontology/oostt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro" + "@id": "http://www.ontobee.org/ontology/OOSTT" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PDRO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "primary health care" + "@value": "traumatology" }, { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenLHS/PDRO" + "@id": "https://github.com/OOSTT/OOSTT" }, - "https://bioregistry.io/schema/#0000005": "0010039", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PDRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "00000099", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OOSTT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pdro.owl" + "@id": "http://purl.obolibrary.org/obo/oostt.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3336-2476" + "@id": "https://orcid.org/0000-0003-1834-3856" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PDRO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OOSTT_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PDRO_0010039" + "@id": "http://purl.obolibrary.org/obo/OOSTT_00000099" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pdro" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "oostt" } }, { - "@id": "https://www.obofoundry.org/ontology/cob", + "@id": "https://bioregistry.io/registry/nist", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIST Chemistry WebBook" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://webbook.nist.gov/chemistry/" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "NIST Chemistry WebBook" + }, + { + "@value": "NIST" + } + ], + "https://bioregistry.io/schema/#0000029": { + "@value": "nist" } }, { - "@id": "https://fairsharing.org/FAIRsharing.a5sv8m", + "@id": "http://www.ontobee.org/ontology/GEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/ega.study", + "@id": "https://registry.identifiers.org/registry/cosmic", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_340", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/tngb", + "@id": "https://bioregistry.io/registry/metacyc.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Telethon Network of Genetic Biobanks" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB" + "@value": "MetaCyc Reaction" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction" + }, + { + "@id": "https://registry.identifiers.org/registry/metacyc.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://biobanknetwork.telethon.it/" + "@id": "https://metacyc.org" }, - "https://bioregistry.io/schema/#0000005": "67035", - "https://bioregistry.io/schema/#0000006": "http://biobanknetwork.telethon.it/Sample/View?sampleId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "RXN-14904", + "https://bioregistry.io/schema/#0000006": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+_.%-:]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://biobanknetwork.telethon.it/Sample/View?sampleId=", + "https://bioregistry.io/schema/#0000024": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://biobanknetwork.telethon.it/Sample/View?sampleId=67035" + "@id": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=RXN-14904" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tngb" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PDRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vsao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4732", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/chembl.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "metacyc.reaction" } }, { - "@id": "https://registry.identifiers.org/registry/biostudies", + "@id": "http://aber-owl.net/ontology/SWO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MRO", + "@id": "https://fairsharing.org/FAIRsharing.xgcyyn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao", + "@id": "https://fairsharing.org/FAIRsharing.9b7wvk", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100011519", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/zea", + "@id": "https://bioregistry.io/registry/mo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Maize gross anatomy", + "http://purl.org/dc/terms/description": "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maize gross anatomy" + "@value": "Microarray experimental conditions" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ZEA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA" + "@id": "https://bioportal.bioontology.org/ontologies/MO" }, { - "@id": "https://registry.bio2kg.org/resource/zea" + "@id": "https://bioregistry.io/metaregistry/biocontext/MO" }, { - "@id": "http://aber-owl.net/ontology/ZEA" + "@id": "http://aber-owl.net/ontology/MO" }, { - "@id": "https://www.obofoundry.org/ontology/zea" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "maize" + "@id": "https://www.obofoundry.org/ontology/mo" }, { - "@value": "obo" - }, + "@id": "https://registry.identifiers.org/registry/mo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { - "@value": "anatomy" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.maizemap.org/" + "@id": "http://mged.sourceforge.net/ontologies/MGEDontology.php" }, - "https://bioregistry.io/schema/#0000005": "ZEA_0015177", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZEA_$1", + "https://bioregistry.io/schema/#0000005": "ArrayGroup", + "https://bioregistry.io/schema/#0000006": "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ZEA/2/zea.obo" + "@id": "http://purl.obolibrary.org/obo/mo.owl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9316-2919" + "@id": "https://orcid.org/0000-0002-5714-991X" + }, + "https://bioregistry.io/schema/#0000024": "https://mged.sourceforge.net/ontologies/MGEDontology.php#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mged.sourceforge.net/ontologies/MGEDontology.php#ArrayGroup" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZEA_", "https://bioregistry.io/schema/#0000029": { - "@value": "zea" + "@value": "mo" } }, { - "@id": "https://orcid.org/0000-0003-0533-3368", + "@id": "https://bioregistry.io/registry/qtldb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/sheepqtldb" + }, + { + "@id": "https://bioregistry.io/registry/chickenqtldb" + }, + { + "@id": "https://bioregistry.io/registry/cattleqtldb" + }, + { + "@id": "https://bioregistry.io/registry/pigqtldb" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jörg Wicker" + "@value": "Animal Genome QTL" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "admin@envipath.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://edamontology.org/data_1174", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://aber-owl.net/ontology/ECG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/qtldb" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.animalgenome.org/QTLdb" + }, + "https://bioregistry.io/schema/#0000005": "4685", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:4685" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "qtldb" } }, { - "@id": "http://www.ontobee.org/ontology/GAZ", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GDC", + "@id": "https://registry.identifiers.org/registry/ega.dataset", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript", + "@id": "https://registry.identifiers.org/registry/amoebadb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/pubchem.classification", + "@id": "https://bioregistry.io/registry/uniprot.tissue", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records.", + "http://purl.org/dc/terms/description": "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://bioregistry.io/registry/pubchem" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubChem Classification" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "chemistry" + "@value": "Tissue List" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist" + }, + { + "@id": "https://registry.identifiers.org/registry/tissuelist" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/classification/" + "@id": "https://www.uniprot.org/docs/tisslist.txt" }, - "https://bioregistry.io/schema/#0000005": "87", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "TS-0285", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/tissues/$1", + "https://bioregistry.io/schema/#0000008": "^TS-\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=", + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/tissues/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=87" + "@id": "https://www.uniprot.org/tissues/TS-0285" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.classification" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "uniprot.tissue" } }, { - "@id": "http://www.wikidata.org/entity/P5221", + "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome", + "@id": "http://agroportal.lirmm.fr/ontologies/TO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.identifiers.org/registry/iceberg.family", + "@id": "https://registry.identifiers.org/registry/rapdb.transcript", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/STY", + "@id": "https://registry.bio2kg.org/resource/hgnc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0003-3001-4908", + "@id": "https://orcid.org/0000-0002-8537-9077", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "URGI Contact" + "@value": "Tanja Bekhuis" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "urgi-contact@versailles.inra.fr" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/oba", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "tanja.bekhuis@tcbinfosci.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.KcCjL7", + "@id": "https://fairsharing.org/FAIRsharing.tke3y2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/idr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/broad", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-2121-365X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lin Huang" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "huanglin36@mail.sysu.edu.cn" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/registry/metanetx.reaction", + "@id": "https://bioregistry.io/registry/genbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.", + "http://purl.org/dc/terms/description": "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MetaNetX reaction" + "@value": "GenBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction" + "@id": "https://semanticscience.org/resource/CHEMINF_000304" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank" }, { - "@id": "https://registry.identifiers.org/registry/metanetx.reaction" + "@id": "https://www.re3data.org/repository/r3d100010528" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION" + "@id": "http://edamontology.org/data_2292" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9kahy4" + }, + { + "@id": "https://registry.bio2kg.org/resource/genbank" + }, + { + "@id": "https://www.uniprot.org/database/DB-0028" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "epidemiology" + }, + { + "@value": "functional genomics" + }, + { + "@value": "transcriptomics" + }, + { + "@value": "dna" + }, + { + "@value": "genomics" + }, + { + "@value": "data management" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "virology" + }, + { + "@value": "metagenomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.metanetx.org/" + "@id": "https://www.ncbi.nlm.nih.gov/genbank/" }, - "https://bioregistry.io/schema/#0000005": "MNXR101574", - "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/equa_info/$1", - "https://bioregistry.io/schema/#0000008": "^(MNXR\\d+|EMPTY)$", + "https://bioregistry.io/schema/#0000005": "U49845", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucleotide/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/equa_info/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucleotide/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.metanetx.org/equa_info/MNXR101574" + "@id": "https://www.ncbi.nlm.nih.gov/nucleotide/U49845" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metanetx.reaction" + "@value": "genbank" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp", + "@id": "https://registry.identifiers.org/registry/mirtarbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2619", + "@id": "https://bioregistry.io/registry/elm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0002-2908-3327", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anne Thessen" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "annethessen@gmail.com" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/tgma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/WB-BT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kbtt7f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012705", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://orcid.org/0000-0002-0629-0446", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Andreas Ledl" + "@value": "Eukaryotic Linear Motif Resource" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "andreas.ledl1@fhnw.ch" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rj3kj5" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ELM" + }, + { + "@id": "https://registry.identifiers.org/registry/elm" + }, + { + "@id": "https://www.uniprot.org/database/DB-0223" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://elm.eu.org/" + }, + "https://bioregistry.io/schema/#0000005": "CLV_MEL_PAP_1", + "https://bioregistry.io/schema/#0000006": "http://elm.eu.org/elms/elmPages/$1.html", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/elm:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://elm.eu.org/elms/elmPages/CLV_MEL_PAP_1.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "elm" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIR", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/co_322", + "@id": "https://bioregistry.io/registry/miriam.resource", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Maize Trait Dictionary in template 5 - CIMMYT- September 2016", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maize ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_322" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322" - }, + "http://purl.org/dc/terms/description": "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://cropontology.org/ontology/CO_322" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.eeyne8" + "@id": "https://bioregistry.io/registry/miriam" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MIRIAM Legacy Registry Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource" }, { - "@value": "botany" + "@id": "https://registry.identifiers.org/registry/miriam.resource" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE" }, { - "@value": "agriculture" + "@id": "https://registry.bio2kg.org/resource/miriam.resource" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_322/Maize" - }, - "https://bioregistry.io/schema/#0000005": "0000773", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_322:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_322/Maize/owl" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "registry" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N3fb4500a7133478882c829d9fdb72cce" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/miriam/" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_322:", + "https://bioregistry.io/schema/#0000005": "00100005", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/miriam/main/resources/$1", + "https://bioregistry.io/schema/#0000008": "^001\\d{5}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/miriam/main/resources/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_322:0000773" + "@id": "https://www.ebi.ac.uk/miriam/main/resources/00100005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_322" + "@value": "miriam.resource" } }, { - "@id": "_:N3fb4500a7133478882c829d9fdb72cce", + "@id": "https://orcid.org/0000-0003-2408-2883", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" + "@value": "Jingshan Huang" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "huang@southalabama.edu" } }, { - "@id": "https://bioregistry.io/registry/mlc", + "@id": "https://bioregistry.io/registry/kclb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MLCommons Association artifacts, including benchmark results, datasets, and saved models.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MLCommons Association" + "@value": "Korean Cell Line Bank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/mlc" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mlcommons.org/en/" + "@id": "https://cellbank.snu.ac.kr/english" }, - "https://bioregistry.io/schema/#0000005": "0.7-123", - "https://bioregistry.io/schema/#0000006": "https://www.mlcommons.org/mlc-id/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z\\.\\-\\_]+$", + "https://bioregistry.io/schema/#0000005": "10020.2", + "https://bioregistry.io/schema/#0000006": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.mlcommons.org/mlc-id/", + "https://bioregistry.io/schema/#0000024": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.mlcommons.org/mlc-id/0.7-123" + "@id": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=10020.2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mlc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "kclb" } }, { - "@id": "https://registry.identifiers.org/registry/prodom", + "@id": "https://registry.identifiers.org/registry/rnamods", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PORO", + "@id": "http://agroportal.lirmm.fr/ontologies/ENVO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/ons", + "@id": "https://bioregistry.io/registry/co_337", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies.", + "http://purl.org/dc/terms/description": "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies" + "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Nutritional Studies" + "@value": "Groundnut ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/ONS" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ONS" - }, - { - "@id": "https://www.obofoundry.org/ontology/ons" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337" }, { - "@id": "http://aber-owl.net/ontology/ONS" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_337" }, { - "@id": "http://www.ontobee.org/ontology/ONS" + "@id": "https://cropontology.org/ontology/CO_337" }, { - "@id": "https://fairsharing.org/FAIRsharing.rfec93" + "@id": "https://fairsharing.org/FAIRsharing.ge8y23" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "nutritional science" + "@value": "ontology" }, { - "@value": "biomedical science" + "@value": "life science" }, { - "@value": "obo" + "@value": "agriculture" }, { - "@value": "ontology" + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies" + "@id": "https://cropontology.org/ontology/CO_337/Groundnut" }, - "https://bioregistry.io/schema/#0000005": "0000060", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONS_$1", + "https://bioregistry.io/schema/#0000005": "0000054", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_337:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ons.owl" + "@id": "https://cropontology.org/ontology/CO_337/Groundnut/owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0091-7981" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_337:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_337:0000054" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_337" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.keyword", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://bioregistry.io/registry/foodon" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Keywords" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW" }, { - "@id": "https://bioregistry.io/registry/obi" + "@id": "https://registry.bio2kg.org/resource/uniprot.kw" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.uniprot.org/keywords/" + }, + "https://bioregistry.io/schema/#0000005": "KW-1273", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/keywords/$1", + "https://bioregistry.io/schema/#0000008": "^KW-\\d{4}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://rest.uniprot.org/keywords/stream?compressed=true&fields=id%2Cname%2Ccategory%2Cgene_ontologies&format=tsv&query=%28%2A%29" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "uniprot.keyword" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@value": "UniProtKB-KW" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@value": "SP_KW" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@value": "uniprot.kw" } ], - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/one" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9125-4337" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONS_", + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/keywords/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ONS_0000060" + "@id": "https://www.uniprot.org/keywords/KW-1273" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ons" + "@value": "uniprot.keyword" } }, { - "@id": "https://registry.identifiers.org/registry/civic.aid", + "@id": "https://bioportal.bioontology.org/ontologies/VSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand", + "@id": "https://bioregistry.io/registry/fbql", + "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FlyBase Qualifiers" + }, + "https://bioregistry.io/schema/#0000005": "00005254", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "fbql" } }, { - "@id": "https://bioregistry.io/registry/disprot.region", + "@id": "https://bartoc.org/en/node/509", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/registry/ctd.disease", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature.", + "http://purl.org/dc/terms/description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/disprot" + "@id": "https://bioregistry.io/registry/ctd" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DisProt region" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/disprot.region" + "@value": "CTD Disease" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE" + }, + { + "@id": "https://registry.identifiers.org/registry/ctd.disease" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.disprot.org" + "@id": "http://ctdbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "D053716", + "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1", + "https://bioregistry.io/schema/#0000008": "^D\\d+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/mesh" }, - "https://bioregistry.io/schema/#0000005": "DP00086r013", - "https://bioregistry.io/schema/#0000006": "https://www.disprot.org/$1", - "https://bioregistry.io/schema/#0000008": "^DP\\d{5}r\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.disprot.org/", + "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.disprot.org/DP00086r013" + "@id": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=D053716" }, "https://bioregistry.io/schema/#0000029": { - "@value": "disprot.region" + "@value": "ctd.disease" } }, { - "@id": "https://www.obofoundry.org/ontology/sbo", + "@id": "https://registry.identifiers.org/registry/pharmgkb.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ogg", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP", + "@id": "https://bioregistry.io/registry/co_370", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Apple (Malus domestica) defines crop traits and variables to support the standardisation of apple breeding databases providing description of agronomic, morphological, physiological, quality traits, its methods and scales.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Apple Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://cropontology.org/ontology/CO_370" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_370" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://cropontology.org/term/CO_370:ROOT" + }, + "https://bioregistry.io/schema/#0000005": "0000890", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_370:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8981-0442" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_370:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_370:0000890" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_370" } }, { - "@id": "http://www.ontobee.org/ontology/CHEBI", + "@id": "http://www.ontobee.org/ontology/DINTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/APAONTO", + "@id": "https://bioregistry.io/registry/hesa", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An identifier for institutions in the United Kingdom, used in GRID and ROR.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UK Higher Education Statistics Agency" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "institution" + }, + { + "@value": "bibliometrics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.hesa.ac.uk" + }, + "https://bioregistry.io/schema/#0000005": "0154", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "hesa" } }, { - "@id": "http://www.ontobee.org/ontology/MI", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/PLANA", + "@id": "https://www.re3data.org/repository/r3d100010350", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/voc4cat", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/nfdi4cat/voc4cat" - }, + "@id": "https://orcid.org/0000-0003-3909-7201", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A vocabulary for the catalysis disciplines" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nfdi4cat.github.io/voc4cat/" - }, - "https://bioregistry.io/schema/#0000005": "0000123", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/nfdi4cat/voc4cat_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7,}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6242-2167" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/nfdi4cat/voc4cat_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/nfdi4cat/voc4cat_0000123" + "@value": "Jörg Overmann" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "voc4cat" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "joerg.overmann@dsmz.de" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.910c39", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.w69t6r", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/genetree", + "@id": "https://registry.identifiers.org/registry/bbtp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/rhea", + "@id": "https://bioregistry.io/registry/dbgap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.", + "http://purl.org/dc/terms/description": "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rhea, the Annotated Reactions Database" + "@value": "Database of Genotypes and Phenotypes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010891" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pn1sr5" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap" }, { - "@id": "https://registry.bio2kg.org/resource/rhea" + "@id": "https://registry.identifiers.org/registry/dbgap" }, { - "@id": "https://registry.identifiers.org/registry/rhea" + "@id": "https://fairsharing.org/FAIRsharing.88v2k0" }, { - "@id": "http://edamontology.org/data_2644" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "biochemistry" + "@value": "genetics" }, { - "@value": "reaction" + "@value": "biomedical science" }, { - "@value": "small molecule" + "@value": "epigenetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.rhea-db.org/" + "@id": "https://www.ncbi.nlm.nih.gov/projects/gap" }, - "https://bioregistry.io/schema/#0000005": "12345", - "https://bioregistry.io/schema/#0000006": "https://www.rhea-db.org/rhea/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000005": "phs000768.v2.p1", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1", + "https://bioregistry.io/schema/#0000008": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1216-2969" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "RHEA" - }, - "https://bioregistry.io/schema/#0000024": "https://www.rhea-db.org/rhea/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.rhea-db.org/rhea/12345" + "@id": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000768.v2.p1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rhea" - } - }, - { - "@id": "https://registry.identifiers.org/registry/brenda", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9e9683", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bartoc.org/en/node/20299", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MAMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@value": "dbgap" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wvpgwn", + "@id": "https://fairsharing.org/FAIRsharing.62evqh", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/FLU", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010527", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/fbql", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://registry.identifiers.org/registry/topdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyBase Qualifiers" - }, - "https://bioregistry.io/schema/#0000005": "00005254", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "fbql" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/omia", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY", + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wpt5mp", + "@id": "https://www.obofoundry.org/ontology/oostt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-3321-6137", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Katy Börner" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "katy@indiana.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100010350", + "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/uniprot.kw", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/jcvi.genprop", + "@id": "https://registry.identifiers.org/registry/eo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/igsr", + "@id": "https://bioregistry.io/registry/wbls", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project.", + "http://purl.org/dc/terms/description": "Ontology about the development and life stages of the C. elegans", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/c-elegans-development-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Genome Sample Resource" + "@value": "C. elegans development ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010180" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls" }, { - "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM" + "@id": "http://aber-owl.net/ontology/WBLS" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR" + "@id": "http://www.ontobee.org/ontology/WBls" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sm90nh" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls" + }, + { + "@id": "https://registry.bio2kg.org/resource/wbls" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/WB-LS" + }, + { + "@id": "https://www.obofoundry.org/ontology/wbls" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "development" }, { - "@value": "comparative genomics" + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "developmental biology" + }, + { + "@value": "obo" + }, + { + "@value": "worm" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.internationalgenome.org/" + "@id": "https://github.com/obophenotype/c-elegans-development-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000690", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBls_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/wbls.owl" }, - "https://bioregistry.io/schema/#0000005": "NA06985", - "https://bioregistry.io/schema/#0000006": "https://www.internationalgenome.org/data-portal/sample/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.internationalgenome.org/data-portal/sample/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9076-6015" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "WBls" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBls_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.internationalgenome.org/data-portal/sample/NA06985" + "@id": "http://purl.obolibrary.org/obo/WBls_0000690" }, "https://bioregistry.io/schema/#0000029": { - "@value": "igsr" + "@value": "wbls" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam", + "@id": "https://registry.bio2kg.org/resource/aclame", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/FOVT", + "@id": "https://orcid.org/0000-0002-0091-7981", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Trushar Shah" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "tm.shah@cgiar.org" + } + }, + { + "@id": "https://bioregistry.io/registry/credit", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CASRAI Contributor Roles Taxonomy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.fe4816" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "subject agnostic" + }, + { + "@value": "data quality" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://casrai.org/credit/" + }, + "https://bioregistry.io/schema/#0000005": "Software", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9298-3168" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "credit" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms", + "@id": "https://bioregistry.io/registry/ubio.namebank", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "uBio NameBank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank" + }, + { + "@id": "https://registry.identifiers.org/registry/ubio.namebank" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ubio.org" + }, + "https://bioregistry.io/schema/#0000005": "2555646", + "https://bioregistry.io/schema/#0000006": "http://www.ubio.org/browser/details.php?namebankID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.ubio.org/browser/details.php?namebankID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ubio.org/browser/details.php?namebankID=2555646" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ubio.namebank" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO", + "@id": "https://registry.identifiers.org/registry/dashr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-DV", + "@id": "https://fairsharing.org/FAIRsharing.b2979t", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ITO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/microsporidia", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/cameo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MicrosporidiaDB" + "@value": "Continuous Automated Model Evaluation" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA" + "@id": "https://fairsharing.org/FAIRsharing.dq34p2" }, { - "@id": "https://registry.identifiers.org/registry/microsporidia" + "@id": "https://registry.identifiers.org/registry/cameo" }, { - "@id": "https://registry.bio2kg.org/resource/microsporidia" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cameo3d.org" + }, + "https://bioregistry.io/schema/#0000005": "2019-08-03_00000089_1", + "https://bioregistry.io/schema/#0000006": "https://www.cameo3d.org/sp/targets/target/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9\\-_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2715-335X" + }, + "https://bioregistry.io/schema/#0000024": "https://www.cameo3d.org/sp/targets/target/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.cameo3d.org/sp/targets/target/2019-08-03_00000089_1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cameo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/cdno", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "None", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Southern-Cross-Plant-Science/cdno" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Compositional Dietary Nutrition Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/CDNO" + }, + { + "@id": "http://www.ontobee.org/ontology/CDNO" + }, + { + "@id": "https://www.obofoundry.org/ontology/cdno" + }, + { + "@id": "http://aber-owl.net/ontology/CDNO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CDNO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "eukaryotic" + "@value": "obo" }, { - "@value": "genome" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://microsporidiadb.org/micro/" + "@id": "https://cdno.info/" + }, + "https://bioregistry.io/schema/#0000005": "0000013", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CDNO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cdno.owl" }, - "https://bioregistry.io/schema/#0000005": "ECU03_0820i", - "https://bioregistry.io/schema/#0000006": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/pato" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7696-731X" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CDNO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=ECU03_0820i" + "@id": "http://purl.obolibrary.org/obo/CDNO_0000013" }, "https://bioregistry.io/schema/#0000029": { - "@value": "microsporidia" + "@value": "cdno" } }, { - "@id": "https://bioregistry.io/schema/#0000018", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "Terms from the source appear in the target resource" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "https://fairsharing.org/FAIRsharing.g1qrqs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012457", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7k8zh0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/sdap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "appears in" + "@value": "Structural Database of Allergenic Proteins" }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/sdap" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://fermi.utmb.edu/SDAP" + }, + "https://bioregistry.io/schema/#0000005": "610", + "https://bioregistry.io/schema/#0000006": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=610" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sdap" } }, { - "@id": "https://www.re3data.org/repository/r3d100013668", + "@id": "https://bioregistry.io/metaregistry/biocontext/CCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/BCGO", + "@id": "http://aber-owl.net/ontology/TADS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE", + "@id": "https://cropontology.org/ontology/CO_367", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bartoc.org/en/node/581", + "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF", + "@id": "https://fairsharing.org/FAIRsharing.h2wrt2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100010528", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS", + "@id": "https://fairsharing.org/FAIRsharing.fc3431", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/bioportal", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" + "@id": "https://bioregistry.io/registry/opm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/MP" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Orientations of Proteins in Membranes Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CEPH" + "@id": "https://fairsharing.org/FAIRsharing.7c683b" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OPM" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECSO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BAO" - }, + "@id": "https://registry.identifiers.org/registry/opm" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ" + "@value": "data management" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DATACITE" - }, + "@value": "computer science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://opm.phar.umich.edu/" + }, + "https://bioregistry.io/schema/#0000005": "1h68", + "https://bioregistry.io/schema/#0000006": "http://opm.phar.umich.edu/protein.php?pdbid=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://opm.phar.umich.edu/protein.php?pdbid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://opm.phar.umich.edu/protein.php?pdbid=1h68" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "opm" + } + }, + { + "@id": "https://bioregistry.io/registry/zeco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ontology of Zebrafish Experimental Conditions", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Zebrafish Experimental Conditions Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SEPIO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NDFRT" + "@id": "https://bioportal.bioontology.org/ontologies/ZECO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NMR" + "@id": "http://aber-owl.net/ontology/ZECO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCO" + "@id": "http://www.ontobee.org/ontology/ZECO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHIRO" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RDFS" + "@id": "https://www.obofoundry.org/ontology/zeco" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD" - }, + "@id": "https://fairsharing.org/FAIRsharing.np2wfz" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/FMA" + "@value": "genomics" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UBERON" + "@value": "animal physiology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MMO" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAMO" + "@value": "developmental biology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV" + "@value": "obo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EMAP" - }, + "@value": "genetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000171", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZECO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/zeco.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mco" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9900-7880" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZECO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ZECO_0000171" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "zeco" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/itis", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Integrated Taxonomic Information System" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CLAO" + "@id": "http://www.wikidata.org/entity/P815" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DTO" + "@id": "https://fairsharing.org/FAIRsharing.t19hpa" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GO" + "@id": "https://bartoc.org/en/node/17791" }, { - "@id": "https://bioportal.bioontology.org/ontologies/COLAO" - }, + "@id": "https://www.re3data.org/repository/r3d100011213" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/OMO" + "@value": "taxonomy" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PLANP" + "@value": "biodiversity" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CAO" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.itis.gov/" + }, + "https://bioregistry.io/schema/#0000005": "589462", + "https://bioregistry.io/schema/#0000006": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4972-3782" + }, + "https://bioregistry.io/schema/#0000024": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=589462" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "itis" + } + }, + { + "@id": "https://bioregistry.io/registry/envipath", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "enviPath" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/EMAPA" + "@id": "https://www.re3data.org/repository/r3d100012715" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DUO" + "@id": "https://registry.identifiers.org/registry/envipath" }, { - "@id": "https://bioportal.bioontology.org/ontologies/COVID19" - }, + "@id": "https://fairsharing.org/FAIRsharing.g0c5qn" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "environmental science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://envipath.org/" + }, + "https://bioregistry.io/schema/#0000005": "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea", + "https://bioregistry.io/schema/#0000006": "https://envipath.org/package/$1", + "https://bioregistry.io/schema/#0000008": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0533-3368" + }, + "https://bioregistry.io/schema/#0000024": "https://envipath.org/package/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://envipath.org/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "envipath" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bugbase.expt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2064", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FIX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ncit", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/bioregistry.schema", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Schema for the export of the Bioregistry as RDF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bioregistry Schema" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioregistry.io/schema" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/schema/#$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/schema/#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bioregistry.schema" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0205", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/txpo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/flymine", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/mzspec", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Universal Spectrum Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/DOID" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PW" + "@id": "https://registry.identifiers.org/registry/mzspec" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OAE" + "@id": "https://fairsharing.org/FAIRsharing.b549b8" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VO" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/TXPO" + "@value": "data governance" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC" + "@value": "metabolomics" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ZFA" - }, + "@value": "proteomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://proteomecentral.proteomexchange.org/" + }, + "https://bioregistry.io/schema/#0000005": "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2", + "https://bioregistry.io/schema/#0000006": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1", + "https://bioregistry.io/schema/#0000008": "^.+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mzspec" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/iao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/planp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/civic.tid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-1767-2343", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gerhard Mayer" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gerhard.mayer@rub.de" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PCL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7q4gsz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nando", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.97805c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/phosphosite.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/stitch", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4dvtcz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://orcid.org/0000-0002-3625-0955", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Charles Ettensohn" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ettensohn@cmu.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/so", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/funderregistry", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FunderRegistry" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/funderregistry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.crossref.org/" + }, + "https://bioregistry.io/schema/#0000005": "100000001", + "https://bioregistry.io/schema/#0000006": "http://data.crossref.org/fundingdata/funder/10.13039/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{9,9}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON" + "@value": "crossref.funder" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO" - }, + "@value": "FundRef" + } + ], + "https://bioregistry.io/schema/#0000024": "http://data.crossref.org/fundingdata/funder/10.13039/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://data.crossref.org/fundingdata/funder/10.13039/100000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "funderregistry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ec-code", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/unirule", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniRule" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.uniprot.org/unirule/" + }, + "https://bioregistry.io/schema/#0000005": "UR000124451", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/unirule/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/unirule/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.uniprot.org/unirule/UR000124451" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "unirule" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ELM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.61c2x6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CTENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NMR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100014071", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/rbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bugbase.protocol", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1578", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.czzmpg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioportal.bioontology.org/ontologies/VTO" + "@id": "https://bioregistry.io/registry/uniprot.resource" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" + "@id": "https://bioregistry.io/registry/uniprot.var" }, { - "@id": "https://bioportal.bioontology.org/ontologies/WB-BT" + "@id": "https://bioregistry.io/registry/uniprot.disease" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCGO" + "@id": "https://bioregistry.io/registry/uniprot.ptm" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA" + "@id": "https://bioregistry.io/registry/uniprot.keyword" }, { - "@id": "https://bioportal.bioontology.org/ontologies/REX" + "@id": "https://bioregistry.io/registry/uniprot.location" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LIPRO" + "@id": "https://bioregistry.io/registry/uniprot.proteome" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OLATDV" + "@id": "https://bioregistry.io/registry/uniprot.isoform" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EXO" + "@id": "https://bioregistry.io/registry/uniprot.chain" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EPSO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DC" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MFOMD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MOP" - }, + "@id": "https://bioregistry.io/registry/uniprot.tissue" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/INO" + "@id": "http://edamontology.org/data_3021" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GSSO" + "@id": "http://aber-owl.net/ontology/UP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TGMA" + "@id": "https://fairsharing.org/FAIRsharing.wf28wm" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VSAO" + "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AERO" + "@id": "http://www.wikidata.org/entity/P352" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SCDO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AIO" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EFO" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIRO" + "@id": "https://www.re3data.org/repository/r3d100011521" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-SP" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UPHENO" + "@id": "https://registry.bio2kg.org/resource/uniprot" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RADLEX" + "@id": "https://registry.identifiers.org/registry/uniprot" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BKO" - }, + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/AGRO" + "@value": "protein" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NDDF" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.uniprot.org" + }, + "https://bioregistry.io/schema/#0000005": "P0DP23", + "https://bioregistry.io/schema/#0000006": "https://purl.uniprot.org/uniprot/$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioportal.bioontology.org/ontologies/AISM" + "@value": "UniProtKB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA" + "@value": "UP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CCF" + "@value": "UniProt" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TRANS" + "@value": "Uniprot ID" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SYMP" + "@value": "uniprot/swiss-prot" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM" - }, + "@value": "SwissProt" + } + ], + "https://bioregistry.io/schema/#0000024": "https://purl.uniprot.org/uniprot/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://purl.uniprot.org/uniprot/P0DP23" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oma.grp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P7807", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/uberon", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/uberon" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Uber Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/OHD" + "@id": "https://bioportal.bioontology.org/ontologies/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EOL" + "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2" + "@id": "http://www.ontobee.org/ontology/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VANDF" + "@id": "https://registry.identifiers.org/registry/uberon" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NCIT" + "@id": "https://fairsharing.org/FAIRsharing.4c0b6b" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SBO" + "@id": "https://www.obofoundry.org/ontology/uberon" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGMS" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/APO" + "@id": "http://aber-owl.net/ontology/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOBI" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPMI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MONDO" - }, + "@id": "http://www.wikidata.org/entity/P1554" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/AFO" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PPO" + "@value": "life science" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CVDO" + "@value": "anatomy" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IAO" + "@value": "developmental biology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CLYH" + "@value": "obo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SIBO" - }, + "@value": "taxonomy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://uberon.org" + }, + "https://bioregistry.io/schema/#0000005": "2005080", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UBERON_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/uberon.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PSDO" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MRO" + "@id": "https://bioregistry.io/registry/pr" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FYPO" - }, + "@id": "https://bioregistry.io/registry/chebi" + } + ], + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioportal.bioontology.org/ontologies/STATO" + "@id": "https://bioregistry.io/registry/fovt" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRO" + "@id": "https://bioregistry.io/registry/ons" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICF" + "@id": "https://bioregistry.io/registry/lepao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE" + "@id": "https://bioregistry.io/registry/maxo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PDRO" + "@id": "https://bioregistry.io/registry/ecao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOODON" + "@id": "https://bioregistry.io/registry/mfmo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBOREL" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OVAE" + "@id": "https://bioregistry.io/registry/chiro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HAO" + "@id": "https://bioregistry.io/registry/ecocore" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MS" + "@id": "https://bioregistry.io/registry/zp" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MF" + "@id": "https://bioregistry.io/registry/cteno" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DRON" + "@id": "https://bioregistry.io/registry/amphx" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PATO" + "@id": "https://bioregistry.io/registry/poro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TADS" + "@id": "https://bioregistry.io/registry/hso" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DINTO" + "@id": "https://bioregistry.io/registry/clo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRISP" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGI" + "@id": "https://bioregistry.io/registry/mco" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NBO" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-DV" + "@id": "https://bioregistry.io/registry/plana" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSO" + "@id": "https://bioregistry.io/registry/clyh" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFOEM" + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SALMON" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MCO" + "@id": "https://bioregistry.io/registry/colao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CIO" + "@id": "https://bioregistry.io/registry/aism" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGG" + "@id": "https://bioregistry.io/registry/genepio" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FLOPO" - }, + "@id": "https://bioregistry.io/registry/envo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioportal.bioontology.org/ontologies/KISAO" + "@value": "UBERON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ROLEO" + "@value": "Uber-anatomy ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MA" - }, + "@value": "Uberon" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UBERON_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/UBERON_2005080" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uberon" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rkpmhn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/neurondb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuronDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV" + "@id": "https://registry.bio2kg.org/resource/neurondb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICO" + "@id": "https://registry.identifiers.org/registry/neurondb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/STY" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IOBC" + "@id": "http://edamontology.org/data_2656" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAXO" - }, + "@id": "https://fairsharing.org/FAIRsharing.45a10e" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/OM" + "@value": "anatomy" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PECO" + "@value": "structure" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDO" + "@value": "neurobiology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LEPAO" + "@value": "cellular neuroscience" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND" + "@value": "comparative neurobiology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MPATH" + "@value": "neurophysiology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAT" + "@value": "molecular neuroscience" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ATC" - }, + "@value": "computational neuroscience" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://senselab.med.yale.edu/NeuronDB/" + }, + "https://bioregistry.io/schema/#0000005": "265", + "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=265" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "neurondb" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.CWzk3C", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dictybase.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OBA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8nq9t6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pride", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jcg19w", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/hgnc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HUGO Gene Nomenclature Committee" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ECG" + "@id": "https://www.uniprot.org/database/DB-0042" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RS" + "@id": "https://fairsharing.org/FAIRsharing.amcv1e" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VIDO" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPL" + "@id": "http://edamontology.org/data_2298" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PROPREO" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DCM" + "@id": "https://registry.bio2kg.org/resource/hgnc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VT" + "@id": "https://bioportal.bioontology.org/ontologies/HGNC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PLANA" + "@id": "http://www.wikidata.org/entity/P354" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOAF" + "@id": "https://registry.identifiers.org/registry/hgnc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OHPI" + "@id": "http://aber-owl.net/ontology/HGNC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/QUDT" - }, + "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/HSO" + "@value": "classification" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EPIO" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDA" + "@value": "life science" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORTH" - }, + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genenames.org" + }, + "https://bioregistry.io/schema/#0000005": "16793", + "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/HGNC/1/hgnc.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8380-5247" + }, + "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/16793" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hgnc" + } + }, + { + "@id": "https://orcid.org/0000-0002-2999-0103", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jie Zheng" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jiezheng@pennmedicine.upenn.edu" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/aro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dg1f0e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/intact", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "IntAct protein interaction database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/pseudo" + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AMPHX" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EUPATH" + "@id": "https://www.re3data.org/repository/r3d100010671" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIXS" + "@id": "https://registry.bio2kg.org/resource/intact" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CL" + "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS" + "@id": "https://fairsharing.org/FAIRsharing.d05nwx" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MDM" + "@id": "https://registry.identifiers.org/registry/intact" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UPA" - }, + "@id": "https://www.uniprot.org/database/DB-0051" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/FAO" + "@value": "interaction" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PHIPO" + "@value": "biology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GAZ" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/intact/" + }, + "https://bioregistry.io/schema/#0000005": "EBI-2307691", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/interaction/$1", + "https://bioregistry.io/schema/#0000008": "^EBI\\-[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8878-3972" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/interaction/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/intact/interaction/EBI-2307691" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "intact" + } + }, + { + "@id": "http://www.ontobee.org/ontology/RNAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/salk", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Scientific research institute for neuroscience, genetics, immunology, plant biology and more.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Salk Institute for Biological Studies" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.salk.edu/" + }, + "https://bioregistry.io/schema/#0000005": "037727", + "https://bioregistry.io/schema/#0000006": "https://abrc.osu.edu/stocks/number/SALK_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/efo" + }, + "https://bioregistry.io/schema/#0000024": "https://abrc.osu.edu/stocks/number/SALK_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://abrc.osu.edu/stocks/number/SALK_037727" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "salk" + } + }, + { + "@id": "https://bioregistry.io/registry/iceberg.element", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CHMO" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECAO" - }, + "@id": "https://bioregistry.io/registry/iceberg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ICEberg integrative and conjugative element" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/HTN" + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VSO" + "@id": "https://registry.identifiers.org/registry/iceberg.element" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FIDEO" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=alpha&alpha=100" + }, + "https://bioregistry.io/schema/#0000005": "100", + "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "iceberg.ice" + }, + "https://bioregistry.io/schema/#0000024": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=100" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iceberg.element" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3e0sn4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pharmvar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0001-8397-8810", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Clair Kronk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kronkcj@mail.uc.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/go_ref", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ttd.drug", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TTD Drug" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/OMP" + "@id": "https://registry.identifiers.org/registry/ttd.drug" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DIDEO" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFO" + "@id": "http://edamontology.org/data_2653" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ZEA" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bidd.nus.edu.sg/group/ttd/ttd.asp" + }, + "https://bioregistry.io/schema/#0000005": "DAP000773", + "https://bioregistry.io/schema/#0000006": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1", + "https://bioregistry.io/schema/#0000008": "^DAP\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=DAP000773" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ttd.drug" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/gro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/easychair.topic", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Call for paper topics in EasyChair", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EasyChair Topic" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CDAO" + "@value": "topics" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NCRO" - }, + "@value": "metascience" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://easychair.org/cfp/" + }, + "https://bioregistry.io/schema/#0000005": "27106865", + "https://bioregistry.io/schema/#0000006": "https://easychair.org/cfp/topic.cgi?tid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://easychair.org/cfp/topic.cgi?tid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://easychair.org/cfp/topic.cgi?tid=27106865" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "easychair.topic" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sye5js", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/SIREN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ttprgy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.65xkbs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-9107-0714", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hilmar Lapp" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hilmar.lapp@duke.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/psdo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Display-Lab/psdo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Performance Summary Display Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RXNO" + "@id": "https://www.obofoundry.org/ontology/psdo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS" + "@id": "https://bioportal.bioontology.org/ontologies/PSDO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/XAO" + "@id": "http://aber-owl.net/ontology/PSDO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NANDO" - }, + "@id": "http://www.ontobee.org/ontology/PSDO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SIO" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/Display-Lab/psdo" + }, + "https://bioregistry.io/schema/#0000005": "0000055", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PSDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/psdo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioportal.bioontology.org/ontologies/DERMO" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORDO" + "@id": "https://bioregistry.io/registry/iao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS" + "@id": "https://bioregistry.io/registry/stato" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTENO" - }, + "@id": "https://bioregistry.io/registry/bfo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9117-9338" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PSDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PSDO_0000055" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "psdo" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/rnajunction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/csp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Computer Retrieval of Information on Science Projects Thesaurus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/FOVT" + "@id": "http://aber-owl.net/ontology/CRISP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECO" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DPO" + "@id": "https://bioportal.bioontology.org/ontologies/CRISP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-CV" - }, + "@id": "https://fairsharing.org/FAIRsharing.1evfpc" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF" + "@value": "medicine" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RBO" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECTO" + "@value": "biomedical science" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FBbi" + "@value": "chemical biology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCI-O" + "@value": "anatomy" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM" + "@value": "biology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM" - }, + "@value": "social science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://web.archive.org/web/20091223034048/http://crisp.cit.nih.gov/Thesaurus/index.htm" + }, + "https://bioregistry.io/schema/#0000005": "2004-2820", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/CSP/$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N8c73ba65128d4714985e9de16a287c3a" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioportal.bioontology.org/ontologies/REXO" + "@value": "CRISP Thesaurus, 2006" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OARCS" + "@value": "CRISP Thesaurus" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PMR" + "@value": "CSP2005" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DCAT" - }, + "@value": "CRISP" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/CSP/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.bioontology.org/ontology/CSP/2004-2820" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "csp" + } + }, + { + "@id": "_:N8c73ba65128d4714985e9de16a287c3a", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anita Ghebeles" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "af8d@nih.gov" + } + }, + { + "@id": "https://bioregistry.io/registry/isbn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The International Standard Book Number (ISBN) is for identifying printed books.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Standard Book Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ENM" + "@id": "https://registry.identifiers.org/registry/isbn" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SAO" + "@id": "https://registry.bio2kg.org/resource/isbn" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SENSO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HOIP" + "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PCL" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PHENX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RGD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HP_O" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OOSTT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LPT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMRSE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LOINC" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TAO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ADO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMIT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OPB" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CTCAE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CTO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PTO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PR" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HGNC" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MCCL" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TEDDY" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ADCAD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ENVO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RXNORM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SWEET" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PORO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CMPO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MPIO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CMO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RETO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ERO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PAV" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DDANAT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ARO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XPO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/WB-LS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PCO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EDAM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XCO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SEP" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CCO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XLMOD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GNO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CIDO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBCS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NOMEN" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CLO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TTO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/UO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FPLX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZP" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HCPCS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBIB" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MIAPA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FLU" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/AEO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZECO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GEXO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LBO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FALDO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ITO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZFS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ATOL" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VARIO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FIX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BFO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ONS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OGSF" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VHOG" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/COB" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GENO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHEBI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BSPO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GEO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LABO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GRO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SWO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NGBO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GFO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICEO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CPT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CDNO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NPO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMIM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EDDA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ONE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GALEN" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RNAO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HOM" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ATO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CARO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OHMI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GECKO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BTO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ADW" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MESH" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FB-BT" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MFMO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SASAP" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SPD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TIME" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NEMO" + "@id": "http://edamontology.org/data_2634" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioPortal Prefixes" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "bibliography" }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://bioportal.bioontology.org/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CHEBI" + "@id": "http://isbndb.com/" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://bioportal.bioontology.org/ontologies/$1" + "https://bioregistry.io/schema/#0000005": "9781584885658", + "https://bioregistry.io/schema/#0000006": "http://isbndb.com/search-all.html?kw=$1", + "https://bioregistry.io/schema/#0000008": "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ISBN-13" + }, + { + "@value": "ISBN-10" + } + ], + "https://bioregistry.io/schema/#0000024": "http://isbndb.com/search-all.html?kw=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://isbndb.com/search-all.html?kw=9781584885658" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6875-5360" + "https://bioregistry.io/schema/#0000029": { + "@value": "isbn" } }, { - "@id": "http://www.ontobee.org/ontology/CDNO", + "@id": "https://registry.identifiers.org/registry/grid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0003-4525-7793", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Silvio C.E. Tosatto" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "silvio.tosatto@unipd.it" + "@id": "http://aber-owl.net/ontology/ordo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/igsn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents.", + "@id": "https://www.obofoundry.org/ontology/opl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Geo Sample Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.c7f365" - }, - { - "@id": "https://registry.identifiers.org/registry/igsn" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.geosamples.org/" - }, - "https://bioregistry.io/schema/#0000005": "AU124", - "https://bioregistry.io/schema/#0000006": "http://igsn.org/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://igsn.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://igsn.org/AU124" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "igsn" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://orcid.org/0000-0002-3583-7340", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/sphn" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Deepak Unni" - }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "deepak.unni3@lbl.gov" - }, - { - "@value": "deepak.unni3@gmail.com" - } - ] + "@id": "https://fairsharing.org/FAIRsharing.ybxnhg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } }, { - "@id": "https://bioregistry.io/registry/sigmaaldrich", + "@id": "https://bioregistry.io/registry/shex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sigma Aldrich is a life sciences supply vendor.", + "http://purl.org/dc/terms/description": "The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sigma Aldrich" + "@value": "Shape Expression Vocabulary" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biology" - }, - { - "@value": "vendor" + "@value": "rdf" }, { - "@value": "life sciences" + "@value": "metadata" }, { - "@value": "chemistry" + "@value": "semantic web" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.sigmaaldrich.com" + "@id": "http://www.w3.org/ns/shex#" }, - "https://bioregistry.io/schema/#0000005": "HPA000698", - "https://bioregistry.io/schema/#0000006": "https://www.sigmaaldrich.com/US/en/product/sigma/$1", + "https://bioregistry.io/schema/#0000005": "TripleExpression", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/shex#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.sigmaaldrich.com/US/en/product/sigma/", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/shex#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.sigmaaldrich.com/US/en/product/sigma/HPA000698" + "@id": "http://www.w3.org/ns/shex#TripleExpression" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sigmaaldrich" - } - }, - { - "@id": "http://aber-owl.net/ontology/OARCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "shex" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000405", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "http://aber-owl.net/ontology/PAV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDD", + "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/civic.gid", + "@id": "https://bioportal.bioontology.org/ontologies/RNAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://edamontology.org/data_2392", + "@id": "https://bioregistry.io/registry/debio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Decentralized Biomedical Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://biopragmatics.github.io/debio" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/debio/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/biopragmatics/debio/main/releases/current/debio.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "DeBiO" + }, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/debio/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/debio/0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "debio" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv", + "@id": "https://bioportal.bioontology.org/ontologies/EMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL", + "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ontoavida", + "@id": "https://fairsharing.org/FAIRsharing.3wbgm0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.j0fa1d", + "@id": "https://fairsharing.org/FAIRsharing.wnk2eq", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE", + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/gtex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/ecn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for a chemical compound per EINECS or ELINCS", + "@id": "https://www.obofoundry.org/ontology/stato", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EC number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://semanticscience.org/resource/CHEMINF_000447" - }, - { - "@id": "http://www.wikidata.org/entity/P232" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://echa.europa.eu/information-on-chemicals" - }, - "https://bioregistry.io/schema/#0000005": "200-003-9", - "https://bioregistry.io/schema/#0000008": "^\\d{3}-\\d{3}-\\d$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecn" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/IDO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6h8d2r", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0003-4654-1403", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Will Simpson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "w.simpson@orcid.org" } }, { - "@id": "https://www.uniprot.org/database/DB-0223", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/ricenetdb.compound", + "@id": "https://bioregistry.io/registry/go.ref", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", + "http://purl.org/dc/terms/description": "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RiceNetDB Compound" + "@value": "Gene Ontology Database references" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ricenetdb.compound" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND" + "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound" + "@id": "https://registry.identifiers.org/registry/go_ref" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bis.zju.edu.cn/ricenetdb" - }, - "https://bioregistry.io/schema/#0000005": "OSC1416", - "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^OSC\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=OSC1416" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ricenetdb.compound" - } - }, - { - "@id": "https://bioregistry.io/registry/bioschemas", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BioSchemas/specifications" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioSchemas" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioschemas.org" + "@id": "http://www.geneontology.org/cgi-bin/references.cgi" }, - "https://bioregistry.io/schema/#0000005": "Dataset", - "https://bioregistry.io/schema/#0000006": "https://bioschemas.org/profiles/$1", + "https://bioregistry.io/schema/#0000005": "0000041", + "https://bioregistry.io/schema/#0000006": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "bioschema" - }, - "https://bioregistry.io/schema/#0000024": "https://bioschemas.org/profiles/", + "https://bioregistry.io/schema/#0000024": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioschemas.org/profiles/Dataset" + "@id": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref0000041" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bioschemas" + "@value": "go.ref" } }, { - "@id": "https://bioregistry.io/registry/ttd.drug", + "@id": "https://bioregistry.io/registry/chembl.target", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/chembl" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TTD Drug" + "@value": "ChEMBL target" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ttd.drug" + "@id": "https://registry.identifiers.org/registry/chembl.target" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets" }, { - "@id": "http://edamontology.org/data_2653" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bidd.nus.edu.sg/group/ttd/ttd.asp" + "@id": "https://www.ebi.ac.uk/chembldb/" }, - "https://bioregistry.io/schema/#0000005": "DAP000773", - "https://bioregistry.io/schema/#0000006": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1", - "https://bioregistry.io/schema/#0000008": "^DAP\\d+$", + "https://bioregistry.io/schema/#0000005": "CHEMBL3467", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/target/inspect/$1", + "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0294-5484" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ChEMBL-Targets" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/target/inspect/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=DAP000773" + "@id": "https://www.ebi.ac.uk/chembl/target/inspect/CHEMBL3467" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ttd.drug" + "@value": "chembl.target" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot", + "@id": "https://cropontology.org/ontology/CO_327", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "http://aber-owl.net/ontology/NEMO", + "@id": "https://registry.identifiers.org/registry/kaggle", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/bykdb", + "@id": "https://registry.identifiers.org/registry/wikipedia.en", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.z4agsr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.x989d5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0160", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/broad", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ratmap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information.", + "http://purl.org/dc/terms/description": "The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bacterial Tyrosine Kinase Database" + "@value": "Rat Genome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/bykdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jr30xc" + "@id": "https://registry.bio2kg.org/resource/ratmap" }, { - "@id": "https://registry.identifiers.org/registry/bykdb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "microbial" + "@value": "dna" }, { - "@value": "sequence" + "@value": "gene" }, { - "@value": "domain" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bykdb.ibcp.fr/BYKdb/" + "@id": "http://ratmap.org" }, - "https://bioregistry.io/schema/#0000005": "A0A009E7X8", - "https://bioregistry.io/schema/#0000006": "https://bykdb.ibcp.fr/data/html/annotated/$1.html", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" + "https://bioregistry.io/schema/#0000005": "5", + "https://bioregistry.io/schema/#0000006": "http://ratmap.org/Showgene.php?gene_stable_id=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bykdb:", + "https://bioregistry.io/schema/#0000024": "http://ratmap.org/Showgene.php?gene_stable_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bykdb.ibcp.fr/data/html/annotated/A0A009E7X8.html" + "@id": "http://ratmap.org/Showgene.php?gene_stable_id=5" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bykdb" - } - }, - { - "@id": "https://orcid.org/0000-0002-1142-3063", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Andrew G. McArthur" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mcarthua@mcmaster.ca" + "@value": "ratmap" } }, { - "@id": "https://www.re3data.org/repository/r3d100012690", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/HGNC", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://registry.identifiers.org/registry/iceberg.element", + "@id": "https://registry.identifiers.org/registry/lei", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/cellimage", + "@id": "https://www.uniprot.org/database/DB-0256", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/frapo", + "@id": "https://bioregistry.io/registry/pmap.substratedb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.", + "http://purl.org/dc/terms/description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/frapo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Funding, Research Administration and Projects Ontology" + "@value": "SubstrateDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.0a2576" + "@id": "https://registry.bio2kg.org/resource/pmap.substratedb" }, { - "@id": "http://aber-owl.net/ontology/FRAPO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB" + }, + { + "@id": "https://registry.identifiers.org/registry/pmap.substratedb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "reaction" + }, + { + "@value": "protein" + }, + { + "@value": "domain" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/frapo" + "@id": "http://substrate.burnham.org/" }, - "https://bioregistry.io/schema/#0000005": "Grant", - "https://bioregistry.io/schema/#0000006": "http://purl.org/cerif/frapo/$1", + "https://bioregistry.io/schema/#0000005": "1915", + "https://bioregistry.io/schema/#0000006": "http://substrate.burnham.org/protein/annotation/$1/html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/cerif/frapo/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pmap.substratedb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/cerif/frapo/Grant" + "@id": "http://substrate.burnham.org/protein/annotation/1915/html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "frapo" + "@value": "pmap.substratedb" } }, { - "@id": "http://www.ontobee.org/ontology/OMO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/eu89h", + "@id": "https://fairsharing.org/FAIRsharing.dyj433", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/ehdaa", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://aber-owl.net/ontology/FB-SP", + "@id": "https://www.re3data.org/repository/r3d100010591", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/smpdb", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/brenda.ligandgroup", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information for ligand groups (chemical classes).", + "@id": "http://aber-owl.net/ontology/UP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BRENDA Ligand Group" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemistry" - }, - { - "@value": "structrual bioinformatics" - }, - { - "@value": "grouping" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.brenda-enzymes.de/ligand.php" - }, - "https://bioregistry.io/schema/#0000005": "18030", - "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=18030" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "brenda.ligandgroup" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-0816-7775", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Philipp Bucher" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Philipp.Bucher@sib.swiss" + "@id": "https://registry.identifiers.org/registry/coriell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.rb2drw", + "@id": "https://fairsharing.org/FAIRsharing.8qzmtr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/nbo", + "@id": "https://bioregistry.io/registry/tcdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of human and animal behaviours and behavioural phenotypes", + "http://purl.org/dc/terms/description": "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obo-behavior/behavior-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Neuro Behavior Ontology" + "@value": "Transporter Classification Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/NBO" + "@id": "https://www.uniprot.org/database/DB-0135" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo" + "@id": "http://www.wikidata.org/entity/P7260" }, { - "@id": "https://fairsharing.org/FAIRsharing.pktgc6" + "@id": "https://registry.identifiers.org/registry/tcdb" }, { - "@id": "http://aber-owl.net/ontology/NBO" + "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NBO" + "@id": "https://fairsharing.org/FAIRsharing.p3bzqb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBO" + "@id": "https://registry.bio2kg.org/resource/tcdb" }, { - "@id": "https://www.obofoundry.org/ontology/nbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TC" + }, + { + "@id": "http://edamontology.org/data_2756" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "life science" }, { - "@value": "ontology" + "@value": "protein" }, { - "@value": "social and behavioural science" + "@value": "knowledge and information systems" }, { - "@value": "systemic neuroscience" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obo-behavior/behavior-ontology/" - }, - "https://bioregistry.io/schema/#0000005": "0000564", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/nbo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/ecto" + "@value": "cell biology" }, { - "@id": "https://bioregistry.io/registry/maxo" + "@value": "computational biology" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@value": "phylogenetics" } ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.tcdb.org" + }, + "https://bioregistry.io/schema/#0000005": "5.A.1.1.1", + "https://bioregistry.io/schema/#0000006": "http://www.tcdb.org/search/result.php?tc=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2061-091X" + "@id": "https://orcid.org/0000-0001-5530-0017" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NBO_", + "https://bioregistry.io/schema/#0000023": { + "@value": "TC" + }, + "https://bioregistry.io/schema/#0000024": "http://www.tcdb.org/search/result.php?tc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NBO_0000564" + "@id": "http://www.tcdb.org/search/result.php?tc=5.A.1.1.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nbo" + "@value": "tcdb" } }, { - "@id": "http://aber-owl.net/ontology/LIPRO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource", + "@id": "https://fairsharing.org/FAIRsharing.5tfcy8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON", + "@id": "https://bioregistry.io/metaregistry/biocontext/MEX", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA", + "@id": "http://www.wikidata.org/entity/P11955", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/lonza", + "@id": "http://aber-owl.net/ontology/FBbi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/ordb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Contains information about cells and data sheets related to transfection.", + "http://purl.org/dc/terms/description": "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lonza" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza" + "@value": "Olfactory Receptor Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/ordb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb" + }, + { + "@id": "https://registry.bio2kg.org/resource/ordb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6375zh" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" + }, + { + "@value": "protein" + }, + { + "@value": "life science" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://knowledge.lonza.com" + "@id": "http://senselab.med.yale.edu/OrDB/" }, - "https://bioregistry.io/schema/#0000005": "968", - "https://bioregistry.io/schema/#0000006": "https://knowledge.lonza.com/cell?id=$1", + "https://bioregistry.io/schema/#0000005": "8497", + "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/ORDB/Data/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://knowledge.lonza.com/cell?id=", + "https://bioregistry.io/schema/#0000024": "http://senselab.med.yale.edu/ORDB/Data/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://knowledge.lonza.com/cell?id=968" + "@id": "http://senselab.med.yale.edu/ORDB/Data/8497" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lonza" + "@value": "ordb" } }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.compound", + "@id": "https://registry.bio2kg.org/resource/treefam", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/XAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8t18te", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3329", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "http://edamontology.org/data_2389", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/nif.grossanatomy", + "@id": "https://bioregistry.io/registry/ido", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/nif" - } - ], + "http://purl.org/dc/terms/description": "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/infectious-disease-ontology/infectious-disease-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Gross Anatomy" + "@value": "Infectious Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY" + "@id": "https://bioportal.bioontology.org/ontologies/IDO" + }, + { + "@id": "http://www.ontobee.org/ontology/IDO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido" + }, + { + "@id": "https://registry.identifiers.org/registry/ido" + }, + { + "@id": "https://www.obofoundry.org/ontology/ido" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.aae3v6" + }, + { + "@id": "http://aber-owl.net/ontology/IDO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "obo" }, + { + "@value": "biomedical science" + }, { "@value": "ontology" + }, + { + "@value": "preclinical studies" + }, + { + "@value": "molecular infection biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neuinfo.org/" + "@id": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000504", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IDO_$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ido.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1", - "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4752-543X" + "@id": "https://orcid.org/0000-0003-1617-8244" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/IDO_0000504" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_", "https://bioregistry.io/schema/#0000029": { - "@value": "nif.grossanatomy" + "@value": "ido" } }, { - "@id": "https://orcid.org/0000-0003-1346-1327", + "@id": "https://orcid.org/0000-0001-9117-7909", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brian Aevermann" + "@value": "Christian-Alexander Dudek" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "baeverma@jcvi.org" + "@value": "c.dudek@tu-braunschweig.de" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB", + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/cellosaurus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pass2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/CCF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/REPRODUCE-ME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011232", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/fungidb", + "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/apd", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/worldavatar.kin", + "@id": "https://bioregistry.io/registry/chemrof", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Represents chemical kinetic reaction mechanisms.", + "http://purl.org/dc/terms/description": "CHEMROF is an ontological framework for Chemical Entities Mixtures Reactions Ontological Framework. This OWL ontology is an automated Translation of the source LinkML schema, https://w3id.org/chemrof", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Chemical Kinetic Reaction Mechanisms" + "@value": "Chemical Entity Materials and Reactions Ontological Framework" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/CHEMROF" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF" + } + ], "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.theworldavatar.com/ontokin/" + "@id": "https://chemkg.github.io/chemrof/" }, - "https://bioregistry.io/schema/#0000005": "ElementNumber", - "https://bioregistry.io/schema/#0000006": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1", + "https://bioregistry.io/schema/#0000005": "FullySpecifiedAtom", + "https://bioregistry.io/schema/#0000006": "https://chemkg.github.io/chemrof/$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl" + "@id": "http://aber-owl.net/media/ontologies/CHEMROF/2/chemrof.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "https://chemkg.github.io/chemrof/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#ElementNumber" + "@id": "https://chemkg.github.io/chemrof/FullySpecifiedAtom" }, "https://bioregistry.io/schema/#0000029": { - "@value": "worldavatar.kin" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zsgmvd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/chiro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/NPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "chemrof" } }, { - "@id": "https://registry.identifiers.org/registry/storedb", + "@id": "https://semanticscience.org/resource/CHEMINF_000409", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RRID", + "@id": "https://fairsharing.org/FAIRsharing.353yat", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE", + "@id": "https://bioregistry.io/registry/ucum", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-0831-6427", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ucum-org/ucum" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Karen Eilbeck" + "@value": "Unified Code for Units of Measure" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "keilbeck@genetics.utah.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.27w8k0" + }, + { + "@id": "https://bartoc.org/en/node/1895" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ucum.org" + }, + "https://bioregistry.io/schema/#0000005": "aBq", + "https://bioregistry.io/schema/#0000006": "https://units-of-measurement.org/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3884-3420" + }, + "https://bioregistry.io/schema/#0000024": "https://units-of-measurement.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://units-of-measurement.org/aBq" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ucum" } }, { - "@id": "https://bioregistry.io/registry/icd9", + "@id": "https://bioregistry.io/registry/poro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.", + "http://purl.org/dc/terms/description": "An ontology describing the anatomical structures and characteristics of Porifera (sponges)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/porifera-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 9th Revision" + "@value": "Porifera Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro" }, { - "@id": "http://www.wikidata.org/entity/P493" + "@id": "http://www.ontobee.org/ontology/PORO" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42" + "@id": "https://bioregistry.io/metaregistry/biocontext/PORO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PORO" + }, + { + "@id": "https://www.obofoundry.org/ontology/poro" + }, + { + "@id": "http://aber-owl.net/ontology/PORO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.93g1th" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "phylogeny" + }, + { + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cdc.gov/nchs/icd/icd9.htm" + "@id": "https://github.com/obophenotype/porifera-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000550", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PORO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/poro.owl" }, - "https://bioregistry.io/schema/#0000005": "277.9", - "https://bioregistry.io/schema/#0000006": "http://www.icd9data.com/getICD9Code.ashx?icd9=$1", - "https://bioregistry.io/schema/#0000008": "^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "MTHICD9_2006" - }, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "ICD9_2005" + "@id": "https://bioregistry.io/registry/ro" }, { - "@value": "ICD9" + "@id": "https://bioregistry.io/registry/uberon" } ], - "https://bioregistry.io/schema/#0000024": "http://www.icd9data.com/getICD9Code.ashx?icd9=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9654-0073" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PORO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.icd9data.com/getICD9Code.ashx?icd9=277.9" + "@id": "http://purl.obolibrary.org/obo/PORO_0000550" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icd9" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dg.4503", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pmap.cutdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sedml.language", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MICRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "poro" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0003-4221-7956", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael Witt" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mwitt@purdue.edu" - } - }, - { - "@id": "http://aber-owl.net/ontology/HSAPDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://edamontology.org/data_2380", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/gemet", + "@id": "https://bioregistry.io/registry/inchikey", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.", + "http://purl.org/dc/terms/description": "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "General Multilingual Environmental Thesaurus" + "@value": "InChIKey" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.9091d9" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/GEMET" + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY" }, { - "@id": "https://bartoc.org/en/node/16" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biodiversity" + "@id": "http://www.wikidata.org/entity/P235" }, { - "@value": "environmental science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey" }, { - "@value": "ecology" + "@id": "https://registry.identifiers.org/registry/inchikey" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.eionet.europa.eu/gemet/en/themes/" + "@id": "http://www.chemspider.com/" }, - "https://bioregistry.io/schema/#0000005": "627", - "https://bioregistry.io/schema/#0000006": "https://www.eionet.europa.eu/gemet/en/concept/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "RYYVLZVUVIJVGH-UHFFFAOYSA-N", + "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/inchikey=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nc5c44dad323647e49e9b04c786ba774e" - }, - "https://bioregistry.io/schema/#0000024": "https://www.eionet.europa.eu/gemet/en/concept/", + "https://bioregistry.io/schema/#0000024": "http://www.chemspider.com/inchikey=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.eionet.europa.eu/gemet/en/concept/627" + "@id": "http://www.chemspider.com/inchikey=RYYVLZVUVIJVGH-UHFFFAOYSA-N" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gemet" - } - }, - { - "@id": "_:Nc5c44dad323647e49e9b04c786ba774e", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eionet Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@eionet.europa.eu" + "@value": "inchikey" } }, { - "@id": "https://bioregistry.io/registry/icdo", + "@id": "https://bioregistry.io/registry/ncbigi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases", + "http://purl.org/dc/terms/description": "A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases for Oncology" + "@value": "GenInfo Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43" - }, - { - "@id": "http://aber-owl.net/ontology/ICDO" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI" }, { - "@id": "https://bartoc.org/en/node/445" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi" }, { - "@id": "http://www.wikidata.org/entity/P563" + "@id": "http://edamontology.org/data_2314" }, { - "@id": "https://registry.bio2kg.org/resource/icdo" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.who.int/classifications/icd/adaptations/oncology/en/" - }, - "https://bioregistry.io/schema/#0000005": "9861/3", - "https://bioregistry.io/schema/#0000006": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1", - "https://bioregistry.io/schema/#0000008": "^[8-9]\\d{3}(/[0-3])?$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ICDO/12/icdo.owl" + "@id": "https://www.ncbi.nlm.nih.gov/genbank/sequenceids/" }, + "https://bioregistry.io/schema/#0000005": "568815597", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/genbank" + }, "https://bioregistry.io/schema/#0000023": [ { - "@value": "ICDO" + "@value": "NCBI_gi" }, { - "@value": "ICD-O" + "@value": "ncbi.gi" } ], - "https://bioregistry.io/schema/#0000024": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=", + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02meqm098" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=9861/3" + "@id": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=568815597" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icdo" + "@value": "ncbigi" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado", + "@id": "https://registry.identifiers.org/registry/uo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/NCBITaxon", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION", + "@id": "https://fairsharing.org/FAIRsharing.3d4jx0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge", + "@id": "https://bioregistry.io/registry/chictr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chinese Clinical Trial Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.chictr.org.cn" + }, + "https://bioregistry.io/schema/#0000005": "ChiCTR2300070727", + "https://bioregistry.io/schema/#0000008": "^ChiCTR\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "chictr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.pathway", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MRO", + "@id": "https://bioregistry.io/metaregistry/biocontext/IDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/ZP", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/gsso", + "@id": "https://bioregistry.io/registry/tahe", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Superraptor/GSSO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gender, Sex, and Sexual Orientation Ontology" + "@value": "Terminology of Anatomy of Human Embryology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/GSSO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GSSO" - }, - { - "@id": "http://aber-owl.net/ontology/GSSO" - }, - { - "@id": "https://registry.identifiers.org/registry/gsso" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE" }, { - "@id": "https://www.obofoundry.org/ontology/gsso" + "@id": "https://www.obofoundry.org/ontology/tahe" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -13078,7546 +15154,8789 @@ "@value": "obo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gsso.research.cchmc.org/" - }, - "https://bioregistry.io/schema/#0000005": "002368", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GSSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/gsso.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/ontoavida" - }, - { - "@id": "https://bioregistry.io/registry/scdo" - } - ], + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAHE_$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8397-8810" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GSSO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GSSO_002368" + "@id": "_:Ne20487b8cfc54ee38941aca52616a216" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAHE_", "https://bioregistry.io/schema/#0000029": { - "@value": "gsso" + "@value": "tahe" } }, { - "@id": "https://bioregistry.io/registry/habronattus", + "@id": "_:Ne20487b8cfc54ee38941aca52616a216", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pierre Sprumont" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pierre.sprumont@unifr.ch" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/grsdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/pathwaycommons", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Habronattus courtship" + "@value": "Pathway Commons" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS" + "@id": "https://www.re3data.org/repository/r3d100012731" }, { - "@id": "https://www.obofoundry.org/ontology/habronattus" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS" + }, { - "@value": "obo" + "@id": "https://www.uniprot.org/database/DB-0253" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons" + }, + { + "@id": "https://registry.identifiers.org/registry/pathwaycommons" + }, + { + "@id": "https://registry.bio2kg.org/resource/pathwaycommons" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pathway" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mesquiteproject.org/ontology/Habronattus/index.html" + "@id": "http://www.pathwaycommons.org/pc/" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HABRONATTUS_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6512-3296" + "https://bioregistry.io/schema/#0000005": "485991", + "https://bioregistry.io/schema/#0000006": "http://www.pathwaycommons.org/pc/record2.do?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pathwaycommons.org/pc/record2.do?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pathwaycommons.org/pc/record2.do?id=485991" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HABRONATTUS_", "https://bioregistry.io/schema/#0000029": { - "@value": "habronattus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/rebase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "pathwaycommons" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_335", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://orcid.org/0000-0001-5084-9000", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Luana Licata" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "luana.licata@gmail.com" } }, { - "@id": "https://www.obofoundry.org/ontology/geno", + "@id": "https://fairsharing.org/FAIRsharing.f928f1", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/mgnify.samp", + "@id": "http://edamontology.org/data_2645", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/ucas", + "@id": "https://bioregistry.io/registry/ppr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An identifier for institutions in the United Kingdom, used in GRID and ROR.", + "http://purl.org/dc/terms/description": "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UK Universities and Colleges Admissions Service" + "@value": "Europe PMC Preprints" }, "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "preprints" + }, { "@value": "bibliometrics" }, { - "@value": "institution" + "@value": "publishing" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ucas.com" + "@id": "https://europepmc.org/Preprints" }, - "https://bioregistry.io/schema/#0000005": "N21", - "https://bioregistry.io/schema/#0000008": "^\\w\\d+$", + "https://bioregistry.io/schema/#0000005": "PPR103739", + "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/ppr/$1", + "https://bioregistry.io/schema/#0000008": "^PPR\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/ppr/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://europepmc.org/article/ppr/PPR103739" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "ucas" + "@value": "ppr" } }, { - "@id": "https://bioregistry.io/registry/th", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]", + "@id": "http://www.ontobee.org/ontology/OBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terminologia Histologica" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biology" - }, - { - "@value": "life sciences" - }, - { - "@value": "cytology" - }, - { - "@value": "histology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ifaa.unifr.ch/" - }, - "https://bioregistry.io/schema/#0000005": "H3.03.00.0.00007", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "th" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.re3data.org/repository/r3d100011518", + "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.vy0p71", + "@id": "https://registry.identifiers.org/registry/biominder", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/kegg", + "@id": "https://www.uniprot.org/database/DB-0023", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://orcid.org/0000-0001-6215-3617", + "@id": "https://orcid.org/0000-0001-6330-7526", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/fyeco" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tim Robertson" + "@value": "Val Wood" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "timrobertson100@gmail.com" + "@value": "vw253@cam.ac.uk" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark", + "@id": "https://www.obofoundry.org/ontology/chebi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/cstr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources. ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0001-5472-917X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Science and Technology Resources" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/cstr" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cstr.cn/en/" - }, - "https://bioregistry.io/schema/#0000005": "31253.11.sciencedb.j00001.00123", - "https://bioregistry.io/schema/#0000006": "https://cstr.cn/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{5}\\.\\d{2}\\..*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cstr.cn/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cstr.cn/31253.11.sciencedb.j00001.00123" + "@value": "Stacia R Engel" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cstr" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "stacia@stanford.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB", + "@id": "http://aber-owl.net/ontology/ENM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/reactome", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/csa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/CIO", + "@id": "https://www.obofoundry.org/ontology/ecto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/myco.lepra", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.", + "@id": "https://www.re3data.org/repository/r3d100013051", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MycoBrowser leprae" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/myco.lepra" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA" - }, - { - "@id": "https://registry.identifiers.org/registry/myco.lepra" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "sequence" - }, - { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mycobrowser.epfl.ch/leprosy.html" - }, - "https://bioregistry.io/schema/#0000005": "ML0224", - "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1", - "https://bioregistry.io/schema/#0000008": "^ML\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=ML0224" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "myco.lepra" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA", + "@id": "https://fairsharing.org/FAIRsharing.1gr4tz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLO", + "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD", + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.protist", + "@id": "https://fairsharing.org/FAIRsharing.e28v7g", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ped.ensemble", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/ped" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Ensemble Database ensemble" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/ped.ensemble" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://proteinensemble.org/" + "@id": "https://registry.identifiers.org/registry/irefweb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2ffmsb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.enzyme", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/kegg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Enzyme" }, - "https://bioregistry.io/schema/#0000005": "PED00017e001", - "https://bioregistry.io/schema/#0000006": "https://proteinensemble.org/$1", - "https://bioregistry.io/schema/#0000008": "^PED\\d{5}e\\d{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://proteinensemble.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://proteinensemble.org/PED00017e001" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.jp/dbget-bin/www_bfind?enzyme" + }, + "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?ec:$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/eccode" }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?ec:", "https://bioregistry.io/schema/#0000029": { - "@value": "ped.ensemble" + "@value": "kegg.enzyme" } }, { - "@id": "https://bioregistry.io/registry/dbest", + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ensembl.protist", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms.", + "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EST database maintained at the NCBI." + "@value": "Ensembl Protists" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010648" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST" }, { - "@id": "https://registry.bio2kg.org/resource/dbest" + "@id": "https://registry.identifiers.org/registry/ensembl.protist" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest" + "@id": "https://registry.bio2kg.org/resource/ensembl.protist" }, { - "@id": "https://fairsharing.org/FAIRsharing.v9fya8" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://protists.ensembl.org" + }, + "https://bioregistry.io/schema/#0000005": "PF3D7_1328700", + "https://bioregistry.io/schema/#0000006": "https://protists.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://protists.ensembl.org/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://protists.ensembl.org/id/PF3D7_1328700" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensembl.protist" + } + }, + { + "@id": "https://bioregistry.io/registry/co_356", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Grape Ontology including OIV and bioversity descriptors. INRA July 2017", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vitis ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/dbest" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_356" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST" + "@id": "https://cropontology.org/ontology/CO_356" }, { - "@id": "http://edamontology.org/data_1105" + "@id": "https://fairsharing.org/FAIRsharing.c7f4d7" } ], "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, { "@value": "life science" }, { - "@value": "bioinformatics" + "@value": "agriculture" }, { - "@value": "dna" + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/nucest" + "@id": "https://cropontology.org/ontology/CO_356/Vitis" + }, + "https://bioregistry.io/schema/#0000005": "4000027", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_356:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_356/Vitis/owl" }, - "https://bioregistry.io/schema/#0000005": "BP100000", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucest/$1", - "https://bioregistry.io/schema/#0000008": "^([A-Z]+)?\\d+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucest/", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nd8046430bd4b45a48b58926eac75104a" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_356:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nucest/BP100000" + "@id": "https://cropontology.org/rdf/CO_356:4000027" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dbest" + "@value": "co_356" } }, { - "@id": "http://aber-owl.net/ontology/QUDT", + "@id": "_:Nd8046430bd4b45a48b58926eac75104a", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_2657", + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/COB", + "@id": "https://fairsharing.org/FAIRsharing.65tdnz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd", + "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD", + "@id": "https://fairsharing.org/FAIRsharing.309v57", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/gdc", + "@id": "https://bioregistry.io/metaregistry/biocontext/IEV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.fe4816", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ddanat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/cgd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.", + "http://purl.org/dc/terms/description": "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomic Data Commons Data Portal" + "@value": "Candida Genome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gdc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GDC" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gdc.cancer.gov" - }, - "https://bioregistry.io/schema/#0000005": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef", - "https://bioregistry.io/schema/#0000006": "https://portal.gdc.cancer.gov/cases/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://portal.gdc.cancer.gov/cases/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://portal.gdc.cancer.gov/cases/ae8c77fe-e6c8-44d5-8265-4a38c637bbef" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gdc" - } - }, - { - "@id": "https://bioregistry.io/registry/p3db.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "P3DB Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.j7j53" + }, { - "@id": "https://registry.identifiers.org/registry/p3db.protein" + "@id": "https://www.uniprot.org/database/DB-0126" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN" + "@id": "https://registry.identifiers.org/registry/cgd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/CGD" }, { - "@id": "https://registry.bio2kg.org/resource/p3db" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD" + }, + { + "@id": "https://registry.bio2kg.org/resource/cgd" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010617" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "small molecule" + "@value": "life science" }, { - "@value": "protein" + "@value": "eukaryotic" + }, + { + "@value": "genome" + }, + { + "@value": "nucleotide" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.p3db.org/" + "@id": "http://www.candidagenome.org/" }, - "https://bioregistry.io/schema/#0000005": "70", - "https://bioregistry.io/schema/#0000006": "http://www.p3db.org/protein.php?id=$1&ref=0", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "CAL0003079", + "https://bioregistry.io/schema/#0000006": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1", + "https://bioregistry.io/schema/#0000008": "^CAL\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/p3db.protein:", + "https://bioregistry.io/schema/#0000024": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.p3db.org/protein.php?id=70&ref=0" + "@id": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0003079" }, "https://bioregistry.io/schema/#0000029": { - "@value": "p3db.protein" + "@value": "cgd" } }, { - "@id": "https://bioregistry.io/registry/gitlab", + "@id": "https://www.uniprot.org/database/DB-0184", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/skm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "http://www.wikidata.org/entity/P5270", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/ctri", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.", + "http://purl.org/dc/terms/description": "The mission of the Clinical Trials Registry-India (CTRI) is to ensure that all clinical trials conducted in India are prospectively registered, i.e. before the enrolment of the first participant. Additionally, post-marketing surveillance studies, BA/BE studies as well as clinical studies as part of PG thesis are also expected to be registered in the CTRI. (from homepage)\n\nNote that the identifier in this semantic space is not the one used in the webpages", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GitLab" + "@value": "India Clinical Trials Registry" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.530e61" - }, - { - "@id": "https://registry.identifiers.org/registry/gitlab" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "knowledge and information systems" - }, - { - "@value": "subject agnostic" - }, - { - "@value": "software engineering" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gitlab.com/" + "@id": "https://ctri.nic.in" }, - "https://bioregistry.io/schema/#0000005": "morpheus.lab/morpheus", - "https://bioregistry.io/schema/#0000006": "https://gitlab.com/$1", - "https://bioregistry.io/schema/#0000008": "^.*/.*$", + "https://bioregistry.io/schema/#0000005": "CTRI/2023/04/052053", + "https://bioregistry.io/schema/#0000008": "^CTRI/\\d{4}/\\d{2}/\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://gitlab.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://gitlab.com/morpheus.lab/morpheus" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "gitlab" - } - }, - { - "@id": "https://registry.identifiers.org/registry/odc.tbi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "ctri" } }, { - "@id": "https://bioregistry.io/registry/bugbase.protocol", + "@id": "https://bioregistry.io/registry/graingenes.symbol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.", + "http://purl.org/dc/terms/description": "A database for Triticeae and Avena gene symbols.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BugBase Protocol" + "@value": "GrainGenes" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL" - }, - { - "@id": "https://registry.identifiers.org/registry/bugbase.protocol" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bugs.sgul.ac.uk/E-BUGS" + "@id": "http://wheat.pw.usda.gov" }, - "https://bioregistry.io/schema/#0000005": "67", - "https://bioregistry.io/schema/#0000006": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "1-FEH+w3", + "https://bioregistry.io/schema/#0000006": "http://wheat.pw.usda.gov/report?class=gene;name=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=", + "https://bioregistry.io/schema/#0000024": "http://wheat.pw.usda.gov/report?class=gene;name=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=67" + "@id": "http://wheat.pw.usda.gov/report?class=gene;name=1-FEH+w3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bugbase.protocol" + "@value": "graingenes.symbol" } }, { - "@id": "https://bioregistry.io/registry/bacdive", + "@id": "https://bioregistry.io/registry/mi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.", + "http://purl.org/dc/terms/description": "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HUPO-PSI/psi-mi-CV" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BacDive" + "@value": "Molecular Interactions Controlled Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.aSszvY" + "@id": "http://www.ontobee.org/ontology/MI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI" }, { - "@id": "https://registry.identifiers.org/registry/bacdive" + "@id": "http://aber-owl.net/ontology/MI" }, { - "@id": "https://www.re3data.org/repository/r3d100013060" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi" }, { - "@id": "http://www.wikidata.org/entity/P2946" + "@id": "https://fairsharing.org/FAIRsharing.8qzmtr" + }, + { + "@id": "https://www.obofoundry.org/ontology/mi" + }, + { + "@id": "https://registry.identifiers.org/registry/mi" + }, + { + "@id": "https://registry.bio2kg.org/resource/psi.mi" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MI" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biodiversity" + "@value": "ontology" }, { - "@value": "microbiology" + "@value": "molecule" }, { "@value": "life science" + }, + { + "@value": "interaction" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bacdive.dsmz.de/" + "@id": "https://github.com/HUPO-PSI/psi-mi-CV" + }, + "https://bioregistry.io/schema/#0000005": "0058", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MI_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mi.owl" }, - "https://bioregistry.io/schema/#0000005": "131392", - "https://bioregistry.io/schema/#0000006": "https://bacdive.dsmz.de/strain/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7805-0660" + "@id": "https://orcid.org/0000-0001-5084-9000" }, - "https://bioregistry.io/schema/#0000024": "https://bacdive.dsmz.de/strain/", + "https://bioregistry.io/schema/#0000023": { + "@value": "PSI-MI" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MI_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bacdive.dsmz.de/strain/131392" + "@id": "http://purl.obolibrary.org/obo/MI_0058" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bacdive" + "@value": "mi" } }, { - "@id": "https://bioregistry.io/registry/pdc.study", + "@id": "https://bioregistry.io/registry/hms.lincs.cell", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.", + "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Proteomic Data Commons" + "@value": "HMS LINCS Cell" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pdc.cancer.gov/pdc" + "@id": "https://lincs.hms.harvard.edu/db/cell/" }, - "https://bioregistry.io/schema/#0000005": "PDC000351", - "https://bioregistry.io/schema/#0000006": "https://pdc.cancer.gov/pdc/study/$1", - "https://bioregistry.io/schema/#0000008": "^PDC\\d+$", + "https://bioregistry.io/schema/#0000005": "50583", + "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/cells/$1", + "https://bioregistry.io/schema/#0000008": "^5\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://pdc.cancer.gov/pdc/study/", + "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/cells/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pdc.cancer.gov/pdc/study/PDC000351" + "@id": "https://lincs.hms.harvard.edu/db/cells/50583" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pdc.study" - } - }, - { - "@id": "https://registry.identifiers.org/registry/unipathway.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.v06c4q", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "hms.lincs.cell" } }, { - "@id": "https://bioregistry.io/registry/imdrf", + "@id": "https://bioregistry.io/registry/nlx.org", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://purl.org/dc/terms/description": "NLXORG covers organisms.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Medical Device Regulators Forum" + "@value": "NIF Standard Ontology: Organisms" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "taxonomy" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.imdrf.org/" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, + "https://bioregistry.io/schema/#0000005": "090701", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXORG" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_090701" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "imdrf" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ftamrc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/IDOMAL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/kegg.orthology", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "nlx.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P1690", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/geo", + "@id": "https://bioregistry.io/registry/hpscreg", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.", + "http://purl.org/dc/terms/description": "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Gene Expression Omnibus" + "@value": "Human Pluripotent Stem Cell Registry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/geo" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" - }, - { - "@id": "http://edamontology.org/data_1147" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO" + "@id": "https://registry.identifiers.org/registry/hpscreg" }, { - "@id": "http://aber-owl.net/ontology/GEO" + "@id": "https://www.re3data.org/repository/r3d100012863" }, { - "@id": "https://fairsharing.org/FAIRsharing.5hc8vt" + "@id": "https://fairsharing.org/FAIRsharing.7C0aVE" }, { - "@id": "https://registry.bio2kg.org/resource/geo" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg" }, { - "@id": "https://www.re3data.org/repository/r3d100010283" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "phenomics" - }, - { - "@value": "genomics" - }, - { - "@value": "comparative genomics" + "@value": "biomedical science" }, { "@value": "life science" - }, - { - "@value": "omics" - }, - { - "@value": "epigenomics" - }, - { - "@value": "genome" - }, - { - "@value": "transcriptomics" - }, - { - "@value": "ontology" - }, - { - "@value": "gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/geo/" - }, - "https://bioregistry.io/schema/#0000005": "GDS1234", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1", - "https://bioregistry.io/schema/#0000008": "^G(PL|SM|SE|DS)\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/GEO/5/geo.owl" + "@id": "https://hpscreg.eu/" }, + "https://bioregistry.io/schema/#0000005": "BCRTi001-A", + "https://bioregistry.io/schema/#0000006": "https://hpscreg.eu/cell-line/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8411-3226" + }, + "https://bioregistry.io/schema/#0000024": "https://hpscreg.eu/cell-line/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GDS1234" + "@id": "https://hpscreg.eu/cell-line/BCRTi001-A" }, "https://bioregistry.io/schema/#0000029": { - "@value": "geo" + "@value": "hpscreg" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_343", + "@id": "http://www.ontobee.org/ontology/PR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/clinvar.submitter", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).", + "@id": "https://registry.identifiers.org/registry/civic.did", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinVar Submitter" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/clinvar.submitter" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/clinvar/" - }, - "https://bioregistry.io/schema/#0000005": "26957", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/26957" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clinvar.submitter" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/HAO", + "@id": "http://www.ontobee.org/ontology/CHMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://orcid.org/0000-0003-1637-404", + "@id": "https://orcid.org/0000-0001-8135-3489", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Christophe Dunand" + "@value": "Lars Holm Nielsen" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dunand@lrsv.ups-tlse.fr" + "@value": "lars.holm.nielsen@cern.ch" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA", + "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/lgai.cede", + "@id": "https://registry.identifiers.org/registry/metlin", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/sciflection", + "@id": "https://registry.identifiers.org/registry/spdx", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0003-2836-3463", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Laurent Duret" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "duret@biomserv.univ-lyon1.fr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/KISAO", + "@id": "https://bartoc.org/en/node/558", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.901nkj", + "@id": "https://registry.bio2kg.org/resource/mampol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM", + "@id": "http://www.wikidata.org/entity/P5458", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.uniprot.org/database/DB-0187", + "@id": "http://www.ontobee.org/ontology/MAMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway", + "@id": "https://bioregistry.io/registry/pwo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/pwo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Publishing Workflow Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.c4e46c" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/pwo" + }, + "https://bioregistry.io/schema/#0000005": "Workflow", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/pwo/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/pwo/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/pwo/Workflow" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pwo" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc", + "@id": "https://cropontology.org/ontology/CO_340", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE", + "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways", + "@id": "https://registry.identifiers.org/registry/ascl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/faldo", + "@id": "https://bioportal.bioontology.org/ontologies/CTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/fix", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/biozil", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of physico-chemical methods and properties.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - } - ], + "http://purl.org/dc/terms/description": "Redistributor of bilogics and biomedical supplies", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Physico-chemical methods and properties" + "@value": "BIOZIL" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.ontobee.org/ontology/FIX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FIX" - }, - { - "@id": "https://registry.bio2kg.org/resource/fix" - }, - { - "@id": "https://www.obofoundry.org/ontology/fix" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix" - }, - { - "@id": "http://aber-owl.net/ontology/FIX" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FIX" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wwy1ns" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "property" + "@value": "biologics" }, { - "@value": "experiment" + "@value": "vendor" }, { - "@value": "chemistry" + "@value": "life sciences" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chebi/" - }, - "https://bioregistry.io/schema/#0000005": "0000390", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FIX_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fix.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N06dae87cab9f4b78b60ddc858172f693" + "@id": "https://www.biozol.de/en" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FIX_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "https://bioregistry.io/schema/#0000005": "ls-c35719-120", + "https://bioregistry.io/schema/#0000006": "https://www.biozol.de/en/product/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.biozol.de/en/product/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.biozol.de/en/product/ls-c35719-120" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fix" + "@value": "biozil" } }, { - "@id": "_:N06dae87cab9f4b78b60ddc858172f693", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "chEBI" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "chebi-help@ebi.ac.uk" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/VO", + "@id": "https://registry.identifiers.org/registry/vario", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/lgic", + "@id": "https://registry.identifiers.org/registry/bbkg", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/insdc.sra", + "@id": "https://bioregistry.io/registry/fossilworks.journal", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sequence Read Archive" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010775" - }, - { - "@id": "https://registry.identifiers.org/registry/insdc.sra" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g7t2hv" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "epidemiology" - }, - { - "@value": "biology" - }, + "http://purl.org/dc/terms/description": "Identifier for a journal article in the fossilworks website", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "genomics" + "@id": "https://bioregistry.io/registry/fossilworks" }, { - "@value": "virology" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fossilworks Journal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P7720" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/sra" + "@id": "http://fossilworks.org" }, - "https://bioregistry.io/schema/#0000005": "SRX000007", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/sra/$1", - "https://bioregistry.io/schema/#0000008": "^[SED]R[APRSXZ]\\d+$", + "https://bioregistry.io/schema/#0000005": "61467", + "https://bioregistry.io/schema/#0000006": "http://fossilworks.org/?a=referenceInfo&reference_no=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/sra/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://fossilworks.org/?a=referenceInfo&reference_no=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/sra/SRX000007" + "@id": "http://fossilworks.org/?a=referenceInfo&reference_no=61467" }, "https://bioregistry.io/schema/#0000029": { - "@value": "insdc.sra" + "@value": "fossilworks.journal" } }, { - "@id": "http://aber-owl.net/ontology/SCHEMAORG", + "@id": "https://fairsharing.org/FAIRsharing.62qk8w", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/imsr_tac", + "@id": "https://fairsharing.org/FAIRsharing.newa3z", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/pdro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_339", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/registry/gwascentral.study", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Supplier of mice for research purposes. [from RRID]", + "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Taconic Biosciences" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC" + "@value": "GWAS Central Study" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "knockout" - }, - { - "@value": "mouse" - }, - { - "@value": "subject" - }, - { - "@value": "research" - }, - { - "@value": "transgenic" - }, - { - "@value": "supply" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "strain" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study" }, { - "@value": "repository" + "@id": "https://registry.identifiers.org/registry/gwascentral.study" }, { - "@value": "model" + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY" }, { - "@value": "genetic engineering" - }, + "@id": "https://registry.bio2kg.org/resource/hgvbase" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "gene" }, { - "@value": "mice" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.taconic.com/" + "@id": "https://www.gwascentral.org/studies" }, - "https://bioregistry.io/schema/#0000005": "1178", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:IMSR_TAC_$1", + "https://bioregistry.io/schema/#0000005": "HGVST1828", + "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/study/$1", + "https://bioregistry.io/schema/#0000008": "^HGVST\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:IMSR_TAC_", + "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/study/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/resolver/RRID:IMSR_TAC_1178" + "@id": "https://www.gwascentral.org/study/HGVST1828" }, "https://bioregistry.io/schema/#0000029": { - "@value": "imsr_tac" + "@value": "gwascentral.study" } }, { - "@id": "https://fairsharing.org/FAIRsharing.1jKfji", + "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/aro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://orcid.org/0000-0002-2908-3327", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anne Thessen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "annethessen@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS", + "@id": "https://orcid.org/0000-0001-6579-6941", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yasset Perez-Riverol" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "yperez@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://fairsharing.org/FAIRsharing.cnwx8c", + "@id": "https://registry.bio2kg.org/resource/pathguide", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/semapv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.", + "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Semantic Mapping Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bartoc.org/en/node/20428" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mapping-commons.github.io/semantic-mapping-vocabulary/" - }, - "https://bioregistry.io/schema/#0000005": "LexicalMatching", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/semapv/vocab/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7356-1779" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/semapv/vocab/", - "https://bioregistry.io/schema/#0000026": { - "@id": "http://www.wikidata.org/entity/Q115518213" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/semapv/vocab/LexicalMatching" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "semapv" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/biomagresbank", + "@id": "https://registry.bio2kg.org/resource/xco", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/RADLEX", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.re3data.org/repository/r3d100010170", + "@id": "https://registry.identifiers.org/registry/microsporidia", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RS", + "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/gendr", + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node", + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/cghdb", + "@id": "https://bioregistry.io/registry/hsapdv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/description": "Life cycle stages for Human", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CGH Data Base" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/developmental-stage-ontologies" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Developmental Stages" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv" + }, + { + "@id": "http://www.ontobee.org/ontology/HsapDv" + }, + { + "@id": "https://www.obofoundry.org/ontology/hsapdv" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c6vhm3" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV" + }, + { + "@id": "http://aber-owl.net/ontology/HSAPDV" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "developmental biology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cghtmd.jp/CGHDatabase/index_e.jsp" + "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv" + }, + "https://bioregistry.io/schema/#0000005": "0000194", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HsapDv_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hsapdv.owl" }, - "https://bioregistry.io/schema/#0000005": "300165/p13898_2106T", - "https://bioregistry.io/schema/#0000006": "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cghdb:", + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9415-5104" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "HsapDv" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HsapDv_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=300165/p13898_2106T&aid=%t&lang=en" + "@id": "http://purl.obolibrary.org/obo/HsapDv_0000194" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cghdb" + "@value": "hsapdv" } }, { - "@id": "https://bioregistry.io/registry/issn", + "@id": "https://fairsharing.org/FAIRsharing.9aa0zp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/jax", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.", + "http://purl.org/dc/terms/description": "Information about the C57BL/6J. Includes genetic background and disease data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Standard Serial Number" + "@value": "Jackson Laboratories Strain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN" + "@id": "https://bioregistry.io/metaregistry/biocontext/JAX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn" + "@id": "https://fairsharing.org/FAIRsharing.5701h1" }, { - "@id": "https://registry.identifiers.org/registry/issn" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "model" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn" + "@value": "gene" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN" + "@value": "subject" + }, + { + "@value": "repository" + }, + { + "@value": "mice" + }, + { + "@value": "knockout" + }, + { + "@value": "genetic engineering" + }, + { + "@value": "supply" + }, + { + "@value": "strain" + }, + { + "@value": "research" + }, + { + "@value": "mouse" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://portal.issn.org" + "@id": "https://www.jax.org/strain" }, - "https://bioregistry.io/schema/#0000005": "0745-4570", - "https://bioregistry.io/schema/#0000006": "https://portal.issn.org/resource/ISSN/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d{3}[\\dX]$", + "https://bioregistry.io/schema/#0000005": "004435", + "https://bioregistry.io/schema/#0000006": "https://www.jax.org/strain/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://portal.issn.org/resource/ISSN/", + "https://bioregistry.io/schema/#0000024": "https://www.jax.org/strain/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://portal.issn.org/resource/ISSN/0745-4570" + "@id": "https://www.jax.org/strain/004435" }, "https://bioregistry.io/schema/#0000029": { - "@value": "issn" + "@value": "jax" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET", + "@id": "https://orcid.org/0000-0001-5256-8683", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Shur-Jen Wang" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sjwang@mcw.edu" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8jsya3", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/tao", + "@id": "http://agroportal.lirmm.fr/ontologies/STY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.identifiers.org/registry/vcell", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mfo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sisu", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/wikipedia.en", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.", + "@id": "https://registry.identifiers.org/registry/lincs.data", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/SOPHARM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/neurolex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wikipedia" + "@value": "NIF Standard Ontology: Neurolex" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex" }, { - "@id": "https://registry.identifiers.org/registry/wikipedia.en" + "@id": "https://registry.bio2kg.org/resource/neurolex" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en" + "@id": "https://registry.identifiers.org/registry/neurolex" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "classification" }, { - "@id": "https://registry.bio2kg.org/resource/wikipedia" + "@value": "ontology" + }, + { + "@value": "neuroscience" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://en.wikipedia.org/wiki/Main_Page" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, - "https://bioregistry.io/schema/#0000005": "SM_UB-81", - "https://bioregistry.io/schema/#0000006": "http://en.wikipedia.org/wiki/$1", - "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000005": "4", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "wikipedia" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" }, - "https://bioregistry.io/schema/#0000024": "http://en.wikipedia.org/wiki/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "NLX" + }, + { + "@value": "nlx" + } + ], + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://en.wikipedia.org/wiki/SM_UB-81" + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wikipedia.en" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HP_O", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012627", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "neurolex" } }, { - "@id": "https://bioregistry.io/registry/stato", + "@id": "https://bioregistry.io/registry/stitch", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.", + "http://purl.org/dc/terms/description": "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ISA-tools/stato" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Statistical Methods Ontology" + "@value": "Search Tool for Interactions of Chemicals" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/STATO" - }, - { - "@id": "http://aber-owl.net/ontology/STATO" - }, - { - "@id": "http://www.ontobee.org/ontology/STATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch" }, { - "@id": "https://fairsharing.org/FAIRsharing.na5xp" + "@id": "https://registry.identifiers.org/registry/stitch" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STATO" + "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato" + "@id": "https://fairsharing.org/FAIRsharing.zhwa8x" }, { - "@id": "https://www.obofoundry.org/ontology/stato" + "@id": "https://registry.bio2kg.org/resource/stitch" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "statistics" + "@value": "small molecule" }, { - "@value": "obo" + "@value": "life science" }, { - "@value": "ontology" + "@value": "protein" }, { - "@value": "data visualization" + "@value": "interaction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://stato-ontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "0000288", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/STATO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/stato.owl" + "@id": "http://stitch.embl.de/" }, + "https://bioregistry.io/schema/#0000005": "BQJCRHHNABKAKU", + "https://bioregistry.io/schema/#0000006": "http://stitch.embl.de/interactions/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{14}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" - }, - { - "@id": "https://bioregistry.io/registry/psdo" - }, - { - "@id": "https://bioregistry.io/registry/ontoavida" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3499-8262" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/STATO_", + "https://bioregistry.io/schema/#0000024": "http://stitch.embl.de/interactions/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/STATO_0000288" + "@id": "http://stitch.embl.de/interactions/BQJCRHHNABKAKU" }, "https://bioregistry.io/schema/#0000029": { - "@value": "stato" + "@value": "stitch" } }, { - "@id": "https://registry.bio2kg.org/resource/vhog", + "@id": "https://registry.bio2kg.org/resource/mpath", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://aber-owl.net/ontology/ECO", + "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/CTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/biomodels.db", + "@id": "https://registry.identifiers.org/registry/mmp.ref", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI", + "@id": "https://www.obofoundry.org/ontology/pdumdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.obofoundry.org/ontology/fbdv", + "@id": "https://registry.identifiers.org/registry/yrcpdr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/bspo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000029", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "has canonical prefix" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/biological-spatial-ontology" + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biological Spatial Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.ontobee.org/ontology/BSPO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.newa3z" - }, - { - "@id": "https://www.obofoundry.org/ontology/bspo" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BSPO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo" - }, - { - "@id": "http://aber-owl.net/ontology/BSPO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "anatomy" - }, - { - "@value": "life science" - }, - { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/biological-spatial-ontology" + "@value": "has prefix" }, - "https://bioregistry.io/schema/#0000005": "0000029", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BSPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/bspo.owl" + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/colao" - }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "https://bioregistry.io/registry/zp" + "@id": "http://purl.org/vocab/vann/preferredNamespacePrefix" }, { - "@id": "https://bioregistry.io/registry/aism" + "@id": "http://vocabularies.bridgedb.org/ops#systemCode" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "http://www.w3.org/ns/shacl#prefix" }, { - "@id": "https://bioregistry.io/registry/lepao" + "@id": "http://identifiers.org/idot/preferredPrefix" } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BSPO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/BSPO_0000029" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bspo" + ] + }, + { + "@id": "https://registry.bio2kg.org/resource/biocyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model", + "@id": "https://registry.identifiers.org/registry/modeldb.concept", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/mfo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/om", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/kisao", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/merops", + "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/wikipathways", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/ma", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WikiPathways is a database of biological pathways maintained by and for the scientific community.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WikiPathways" + "@value": "Mouse adult gross anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_3952" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways" + "@id": "http://www.ontobee.org/ontology/MA" }, { - "@id": "https://fairsharing.org/FAIRsharing.g7b4rj" + "@id": "https://bioregistry.io/metaregistry/biocontext/MA" }, { - "@id": "http://www.wikidata.org/entity/P2410" + "@id": "https://bioportal.bioontology.org/ontologies/MA" }, { - "@id": "https://registry.identifiers.org/registry/wikipathways" + "@id": "https://fairsharing.org/FAIRsharing.pdwqcr" }, { - "@id": "https://registry.bio2kg.org/resource/wikipathways" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma" }, { - "@id": "https://www.re3data.org/repository/r3d100013316" + "@id": "https://registry.bio2kg.org/resource/ma" + }, + { + "@id": "https://www.obofoundry.org/ontology/ma" + }, + { + "@id": "http://aber-owl.net/ontology/MA" + }, + { + "@id": "https://registry.identifiers.org/registry/ma" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "virology" + "@value": "mouse" }, { - "@value": "epidemiology" + "@value": "ontology" }, { - "@value": "pathway" + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.wikipathways.org/" + "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0002502", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ma.owl" }, - "https://bioregistry.io/schema/#0000005": "WP732", - "https://bioregistry.io/schema/#0000006": "http://www.wikipathways.org/instance/$1", - "https://bioregistry.io/schema/#0000008": "^WP\\d{1,5}(\\_r\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" + "@id": "https://orcid.org/0000-0002-0956-8634" }, - "https://bioregistry.io/schema/#0000024": "http://www.wikipathways.org/instance/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MA_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.wikipathways.org/instance/WP732" + "@id": "http://purl.obolibrary.org/obo/MA_0002502" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wikipathways" + "@value": "ma" } }, { - "@id": "http://www.wikidata.org/entity/P4537", + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/icd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.wikidata.org/entity/P7260", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/csd", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/dbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.", + "http://purl.org/dc/terms/description": "This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cambridge Structural Database" + "@value": "DBPedia Ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/csd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vs7865" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010197" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "organic molecular chemistry" - }, - { - "@value": "organic chemistry" - }, - { - "@value": "biochemistry" + "@value": "ontology" }, { - "@value": "chemistry" + "@value": "dbpedia" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ccdc.cam.ac.uk/" + "@id": "https://dbpedia.org/ontology" }, - "https://bioregistry.io/schema/#0000005": "PELNAW", - "https://bioregistry.io/schema/#0000006": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{6}(\\d{2})?$", + "https://bioregistry.io/schema/#0000005": "careerPrizeMoney", + "https://bioregistry.io/schema/#0000006": "https://dbpedia.org/ontology/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6062-7492" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/csd:", + "https://bioregistry.io/schema/#0000024": "https://dbpedia.org/ontology/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:PELNAW&sid=IDORG" + "@id": "https://dbpedia.org/ontology/careerPrizeMoney" }, "https://bioregistry.io/schema/#0000029": { - "@value": "csd" + "@value": "dbo" } }, { - "@id": "https://registry.identifiers.org/registry/pigqtldb", + "@id": "https://registry.bio2kg.org/resource/gramene.po", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/kerafast", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "@id": "http://aber-owl.net/ontology/MIXS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kerafast cell lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.kerafast.com/" - }, - "https://bioregistry.io/schema/#0000005": "EJH014", - "https://bioregistry.io/schema/#0000006": "https://www.kerafast.com/Search?SearchTerm="$1"", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/kerafast:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kerafast.com/Search?SearchTerm="EJH014"" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kerafast" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/metatlas.metabolite", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A subspace of Metabolic Atlas for compartment-specific records for metabolites.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/metatlas" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolic Atlas Metabolite" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemistry" - }, - { - "@value": "metabolites" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metabolicatlas.org" - }, - "https://bioregistry.io/schema/#0000005": "MAM01234c", - "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", - "https://bioregistry.io/schema/#0000008": "^MAM\\d{5}\\w$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7753-9042" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAM01234c" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "metatlas.metabolite" + "@id": "https://fairsharing.org/FAIRsharing.hkk309", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/ms", + "@id": "http://www.ontobee.org/ontology/APOLLO_SV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/virushostdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys.", + "@id": "https://registry.identifiers.org/registry/rgd.strain", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Virus-HostDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/virushostdb" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "virus" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/virushostdb/" - }, - "https://bioregistry.io/schema/#0000005": "438782", - "https://bioregistry.io/schema/#0000006": "https://www.genome.jp/virushostdb/$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.genome.jp/virushostdb/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genome.jp/virushostdb/438782" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "virushostdb" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ARO", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_333", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://aber-owl.net/ontology/EUPATH", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/taxonomy", + "@id": "https://www.uniprot.org/database/DB-0174", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/hsdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas.", + "@id": "http://aber-owl.net/ontology/PROV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hazardous Substances Data Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P2062" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb" - }, - "https://bioregistry.io/schema/#0000005": "5621", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/5621" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hsdb" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid", + "@id": "https://semanticscience.org/resource/CHEMINF_000567", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://registry.identifiers.org/registry/gxa.gene", + "@id": "http://www.ontobee.org/ontology/UBERON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.bio2kg.org/resource/wbls", + "@id": "https://registry.bio2kg.org/resource/rgd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bartoc.org/en/node/2053", + "@id": "https://www.uniprot.org/database/DB-0074", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/scomp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Selventa legacy complex namespace used with the Biological Expression Language", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Selventa Complexes" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ecyano", + "http://purl.org/dc/terms/hasPart": [ { - "@value": "selventa" + "@id": "https://bioregistry.io/registry/ecyano.experiment" }, { - "@value": "bel" + "@id": "https://bioregistry.io/registry/ecyano.rule" }, { - "@value": "protein complexes" + "@id": "https://bioregistry.io/registry/ecyano.entity" } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt" - }, - "https://bioregistry.io/schema/#0000005": "C0001", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/scomp/$1", - "https://bioregistry.io/schema/#0000008": "^C\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/scomp/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/scomp/C0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scomp" + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.gene", + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/drugcentral", + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord", + "@id": "https://www.uniprot.org/database/DB-0145", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/bindingdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kbtt7f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/signor", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/sdap", + "@id": "https://fairsharing.org/FAIRsharing.f63h4k", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem", + "@id": "https://registry.bio2kg.org/resource/lipidbank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.wikidata.org/entity/P699", + "@id": "https://registry.identifiers.org/registry/probonto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv", + "@id": "https://registry.identifiers.org/registry/ird.segment", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao", + "@id": "https://registry.identifiers.org/registry/chemdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EO", + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY", + "@id": "https://registry.bio2kg.org/resource/pibase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/unipathway", + "@id": "https://registry.bio2kg.org/resource/po", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ", + "@id": "https://bioportal.bioontology.org/ontologies/FPLX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/aspgd.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.", + "@id": "http://www.wikidata.org/entity/P352", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AspGD Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/aspgd.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.aspgd.org/" - }, - "https://bioregistry.io/schema/#0000005": "ASPL0000349247", - "https://bioregistry.io/schema/#0000006": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=ASPL0000349247" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aspgd.protein" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/innatedb", + "@id": "https://bioregistry.io/registry/agro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation.", + "http://purl.org/dc/terms/description": "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/AgriculturalSemantics/agro" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A Knowledge Resource for Innate Immunity Interactions and Pathways" + "@value": "Agronomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/innatedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO" }, { - "@id": "https://www.re3data.org/repository/r3d100010676" + "@id": "https://fairsharing.org/FAIRsharing.m40bhw" }, { - "@id": "https://fairsharing.org/FAIRsharing.rb2drw" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://agroportal.lirmm.fr/ontologies/AGRO" + }, { - "@value": "immunology" + "@id": "http://www.ontobee.org/ontology/AGRO" }, { - "@value": "protein" + "@id": "https://bioportal.bioontology.org/ontologies/AGRO" }, { - "@value": "pathway" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro" }, { - "@value": "interaction" + "@id": "https://www.obofoundry.org/ontology/agro" }, { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/AGRO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" }, { - "@value": "gene" + "@value": "agriculture" + }, + { + "@value": "farming systems research" + }, + { + "@value": "plant breeding" + }, + { + "@value": "ontology" + }, + { + "@value": "agronomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.innatedb.ca/" + "@id": "https://github.com/AgriculturalSemantics/agro" + }, + "https://bioregistry.io/schema/#0000005": "00020007", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AGRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/agro.owl" }, - "https://bioregistry.io/schema/#0000005": "20021", - "https://bioregistry.io/schema/#0000006": "http://www.innatedb.ca/getGeneCard.do?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/to" + }, + { + "@id": "https://bioregistry.io/registry/xco" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/uo" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/po" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/peco" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8461-9745" }, - "https://bioregistry.io/schema/#0000024": "http://www.innatedb.ca/getGeneCard.do?id=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AGRO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.innatedb.ca/getGeneCard.do?id=20021" + "@id": "http://purl.obolibrary.org/obo/AGRO_00020007" }, "https://bioregistry.io/schema/#0000029": { - "@value": "innatedb" + "@value": "agro" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI", + "@id": "https://bioregistry.io/registry/iso.3166", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An identifier for a country in numeric format per ISO 3166-1", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ISO 3166-1 Country Code" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P299" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.iso.org/iso-3166-country-codes.html" + }, + "https://bioregistry.io/schema/#0000005": "554", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "iso.3166" } }, { - "@id": "https://orcid.org/0000-0002-3375-1738", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael K. Gilson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mgilson@health.ucsd.edu" + "@id": "http://www.wikidata.org/entity/P815", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN", + "@id": "https://registry.bio2kg.org/resource/merops", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-8981-0442", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ekaterina Chuprikova" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ekaterina.chuprikova@eurac.edu" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/clinvar.record", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0161", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/pesticideinfo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/clinvar" - } - ], + "http://purl.org/dc/terms/description": "chemical in the database supplied by Pesticide Action Network North America", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinVar Record" + "@value": "PesticideInfo chemical ID" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P11949" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD" - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.record" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" + "@id": "https://www.pesticideinfo.org" }, - "https://bioregistry.io/schema/#0000005": "RCV000033555.3", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/clinvar/$1", - "https://bioregistry.io/schema/#0000008": "^RCV\\d+(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "PRI10", + "https://bioregistry.io/schema/#0000006": "https://www.pesticideinfo.org/chemical/$1", + "https://bioregistry.io/schema/#0000008": "^PRI\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/clinvar/", + "https://bioregistry.io/schema/#0000024": "https://www.pesticideinfo.org/chemical/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/clinvar/RCV000033555.3" + "@id": "https://www.pesticideinfo.org/chemical/PRI10" }, "https://bioregistry.io/schema/#0000029": { - "@value": "clinvar.record" + "@value": "pesticideinfo" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GEXO", + "@id": "https://bioregistry.io/metaregistry/biocontext/RS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto", + "@id": "https://orcid.org/0000-0002-1171-9876", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Martin Kuiper" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kuiper@bio.ntnu.no" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OHPI", + "@id": "https://bioregistry.io/metaregistry/biocontext/EPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5mr9c5", + "@id": "https://fairsharing.org/FAIRsharing.efv7gw", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb", + "@id": "https://fairsharing.org/FAIRsharing.4cvwxa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.aa0eat", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/panther", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/panther.family" - }, - { - "@id": "https://bioregistry.io/registry/panther.pathway" - }, - { - "@id": "https://bioregistry.io/registry/panther.node" - }, - { - "@id": "https://bioregistry.io/registry/panther.pthcmp" - } - ] + "@id": "http://aber-owl.net/ontology/ADO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK", + "@id": "https://registry.bio2kg.org/resource/pubmed", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/BFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bgee.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CCF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/chembl", + "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/registry/rxnorm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/chembl.target" - }, - { - "@id": "https://bioregistry.io/registry/chembl.cell" - }, - { - "@id": "https://bioregistry.io/registry/chembl.compound" - } - ], + "http://purl.org/dc/terms/description": "RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/chembl/GLaDOS" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChEMBL" + "@value": "RxNorm" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://semanticscience.org/resource/CHEMINF_000412" + "@id": "http://www.wikidata.org/entity/P3345" }, { - "@id": "https://registry.bio2kg.org/resource/chembl" + "@id": "https://fairsharing.org/FAIRsharing.36pf8q" }, { - "@id": "https://registry.identifiers.org/registry/chembl" + "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI" }, { - "@id": "https://www.re3data.org/repository/r3d100010539" + "@id": "https://bioportal.bioontology.org/ontologies/RXNORM" }, { - "@id": "https://www.uniprot.org/database/DB-0174" + "@id": "http://aber-owl.net/ontology/RXNORM" }, { - "@id": "https://fairsharing.org/FAIRsharing.m3jtpg" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "molecules" - }, - { - "@value": "medicinal chemistry" - }, - { - "@value": "drug discovery" + "@value": "biomedical science" }, { - "@value": "genomics" + "@value": "ontology" }, { - "@value": "biochemistry" + "@value": "preclinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chembl" + "@id": "https://www.nlm.nih.gov/research/umls/rxnorm/" }, - "https://bioregistry.io/schema/#0000005": "CHEMBL4303805", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/entity/$1", - "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", + "https://bioregistry.io/schema/#0000005": "221058", + "https://bioregistry.io/schema/#0000006": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{1,7}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0294-5484" + "@id": "_:Nd4c2dc2769a94670873d7070c483e69c" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "ChEMBL" - }, - { - "@value": "chembl" - }, - { - "@value": "ChEMBL_ID" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/entity/", + "https://bioregistry.io/schema/#0000023": { + "@value": "RXCUI" + }, + "https://bioregistry.io/schema/#0000024": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/chembl/entity/CHEMBL4303805" + "@id": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=221058" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chembl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/panther.node", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "rxnorm" } }, { - "@id": "http://www.ontobee.org/ontology/SEPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "_:Nd4c2dc2769a94670873d7070c483e69c", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NLM Customer Service" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "custserv@nlm.nih.gov" } }, { - "@id": "https://bioregistry.io/registry/gudmap", + "@id": "https://bioregistry.io/registry/cath", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.", + "http://purl.org/dc/terms/description": "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/cath.superfamily" + }, "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genitourinary Development Molecular Anatomy Project" + "@value": "CATH Protein Structural Domain Superfamily" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap" + "@id": "https://fairsharing.org/FAIRsharing.xgcyyn" }, { - "@id": "https://fairsharing.org/FAIRsharing.910c39" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP" + "@id": "http://edamontology.org/data_2700" }, { - "@id": "https://registry.identifiers.org/registry/gudmap" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH" }, { - "@id": "https://www.re3data.org/repository/r3d100012193" + "@id": "https://www.re3data.org/repository/r3d100012629" + }, + { + "@id": "https://registry.identifiers.org/registry/cath" + }, + { + "@id": "https://registry.bio2kg.org/resource/cath" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "molecular biology" + "@value": "evolutionary biology" }, { - "@value": "genomics" + "@value": "classification" }, { - "@value": "cell biology" + "@value": "protein" }, { - "@value": "developmental biology" + "@value": "structure" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gudmap.org/" + "@id": "http://www.cathdb.info" }, - "https://bioregistry.io/schema/#0000005": "Q-2958", - "https://bioregistry.io/schema/#0000006": "https://gudmap.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", + "https://bioregistry.io/schema/#0000005": "1.10.8.10", + "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/cathnode/$1", + "https://bioregistry.io/schema/#0000008": "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://gudmap.org/id/", + "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/cathnode/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://gudmap.org/id/Q-2958" + "@id": "http://www.cathdb.info/cathnode/1.10.8.10" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gudmap" + "@value": "cath" } }, { - "@id": "https://bioregistry.io/registry/glida.gpcr", + "@id": "https://bioregistry.io/registry/vo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.", + "http://purl.org/dc/terms/description": "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/vaccineontology/VO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GLIDA GPCR" + "@value": "Vaccine Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/glida.gpcr" + "@id": "http://www.ontobee.org/ontology/VO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr" + "@id": "https://bioportal.bioontology.org/ontologies/VO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR" + "@id": "http://aber-owl.net/ontology/VO" + }, + { + "@id": "https://www.obofoundry.org/ontology/vo" + }, + { + "@id": "http://www.wikidata.org/entity/P1928" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zwtww5" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo" + }, + { + "@id": "https://registry.bio2kg.org/resource/vo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathobiochemistry" + }, + { + "@value": "small molecule" + }, + { + "@value": "immunology" + }, + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "vaccine" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/" + "@id": "http://www.violinet.org/vaccineontology" + }, + "https://bioregistry.io/schema/#0000005": "0000093", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vo.owl" }, - "https://bioregistry.io/schema/#0000005": "ACM1_HUMAN", - "https://bioregistry.io/schema/#0000006": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z-_0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=", + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=ACM1_HUMAN" + "@id": "http://purl.obolibrary.org/obo/VO_0000093" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glida.gpcr" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://aber-owl.net/ontology/PECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.sjf113", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/VO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/glyconavi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-9654-0073", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bob Thacker" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "robert.thacker@stonybrook.edu" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vdbagq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "vo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/inaturalist.place", + "@id": "https://bioregistry.io/registry/smpdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for a place in iNaturalist", + "http://purl.org/dc/terms/description": "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "iNaturalist Place" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P7471" + "@value": "Small Molecule Pathway Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb" + }, + { + "@id": "https://registry.identifiers.org/registry/smpdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz" + }, + { + "@id": "https://registry.bio2kg.org/resource/smpdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB" + }, + { + "@id": "http://edamontology.org/data_2659" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y1zyaq" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" + }, + { + "@value": "human" + }, + { + "@value": "chemical" + }, + { + "@value": "life science" + }, + { + "@value": "metabolite" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.inaturalist.org/places" + "@id": "https://smpdb.ca/" }, - "https://bioregistry.io/schema/#0000005": "7207", - "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/places/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", + "https://bioregistry.io/schema/#0000005": "SMP0000219", + "https://bioregistry.io/schema/#0000006": "https://smpdb.ca/view/$1", + "https://bioregistry.io/schema/#0000008": "^SMP\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/places/", + "https://bioregistry.io/schema/#0000023": { + "@value": "SMP" + }, + "https://bioregistry.io/schema/#0000024": "https://smpdb.ca/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.inaturalist.org/places/7207" + "@id": "https://smpdb.ca/view/SMP0000219" }, "https://bioregistry.io/schema/#0000029": { - "@value": "inaturalist.place" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-4299-7561", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Gloriam" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "david.gloriam@sund.ku.dk" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "smpdb" } }, { - "@id": "https://bioregistry.io/registry/fyeco", + "@id": "https://bioregistry.io/registry/topdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.", + "http://purl.org/dc/terms/description": "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/pombase/fypo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fission Yeast Experimental Conditions Ontology" + "@value": "Topology Data Bank of Transmembrane Proteins" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB" + }, + { + "@id": "https://registry.bio2kg.org/resource/topdb" + }, + { + "@id": "http://edamontology.org/data_2789" + }, + { + "@id": "https://registry.identifiers.org/registry/topdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/pombase/fypo" + "@id": "http://topdb.enzim.hu/" }, - "https://bioregistry.io/schema/#0000005": "0000003", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "AP00378", + "https://bioregistry.io/schema/#0000006": "http://topdb.enzim.hu/?m=show&id=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6330-7526" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000024": "http://topdb.enzim.hu/?m=show&id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://topdb.enzim.hu/?m=show&id=AP00378" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fyeco" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/zea", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "topdb" } }, { - "@id": "https://bioregistry.io/registry/rebase", + "@id": "https://bioregistry.io/registry/cst", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.", + "http://purl.org/dc/terms/description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "REBASE Enzyme Number" + "@value": "Cell Signaling Technology Pathways" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P4866" - }, - { - "@id": "https://www.uniprot.org/database/DB-0089" - }, - { - "@id": "https://registry.bio2kg.org/resource/rebase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE" - }, - { - "@id": "http://edamontology.org/data_2325" + "@id": "https://bioregistry.io/metaregistry/biocontext/CST" }, { - "@id": "https://fairsharing.org/FAIRsharing.9sb9qh" + "@id": "https://fairsharing.org/FAIRsharing.n8pxvx" }, { - "@id": "https://registry.identifiers.org/registry/rebase" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst" }, { - "@id": "https://www.re3data.org/repository/r3d100012171" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE" + "@id": "https://registry.identifiers.org/registry/cst" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "enzyme" - }, - { - "@value": "small molecule" + "@value": "biomedical science" }, { "@value": "life science" - }, - { - "@value": "rna" - }, - { - "@value": "structure" - }, - { - "@value": "dna" - }, - { - "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rebase.neb.com/rebase/" + "@id": "http://www.cellsignal.com/pathways/index.html" }, - "https://bioregistry.io/schema/#0000005": "101", - "https://bioregistry.io/schema/#0000006": "http://rebase.neb.com/rebase/enz/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "Akt_PKB", + "https://bioregistry.io/schema/#0000006": "http://www.cellsignal.com/reference/pathway/$1.html", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9_-]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/rebase:", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cst:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://rebase.neb.com/rebase/enz/101.html" + "@id": "http://www.cellsignal.com/reference/pathway/Akt_PKB.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rebase" + "@value": "cst" } }, { - "@id": "https://fairsharing.org/FAIRsharing.17zapb", + "@id": "https://fairsharing.org/FAIRsharing.bc8ayj", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rfc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Legacy site for IETF RFC proposals", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Internet Standard -- IETF Request for Comments" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ietf.org/" - }, - "https://bioregistry.io/schema/#0000005": "5013", - "https://bioregistry.io/schema/#0000006": "https://tools.ietf.org/rfc/rfc$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://tools.ietf.org/rfc/rfc", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://tools.ietf.org/rfc/rfc5013" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rfc" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NCIT", + "@id": "https://semanticscience.org/resource/CHEMINF_000304", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7q4gsz", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/fishbase.species", + "@id": "https://bioregistry.io/registry/edam.topic", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FishBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/description": "A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "http://www.wikidata.org/entity/P938" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://www.re3data.org/repository/r3d100010912" + "@id": "https://bioregistry.io/registry/edam" } ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/edamontology/edamontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EDAM Topic" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://fishbase.org" + "@id": "http://edamontology.org" }, - "https://bioregistry.io/schema/#0000005": "6472", - "https://bioregistry.io/schema/#0000006": "https://www.fishbase.ca/summary/$1", + "https://bioregistry.io/schema/#0000005": "0003", + "https://bioregistry.io/schema/#0000006": "http://edamontology.org/topic_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" + }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "fishbase" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1509-4981" }, - "https://bioregistry.io/schema/#0000024": "https://www.fishbase.ca/summary/", + "https://bioregistry.io/schema/#0000024": "http://edamontology.org/topic_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.fishbase.ca/summary/6472" + "@id": "http://edamontology.org/topic_0003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fishbase.species" + "@value": "edam.topic" } }, { - "@id": "http://www.ontobee.org/ontology/VBO", + "@id": "https://registry.identifiers.org/registry/gwascentral.marker", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.y5jcwa", + "@id": "https://www.obofoundry.org/ontology/sopharm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/ito", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-5103-9058", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ali Syed" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ali.syed@kaust.edu.sa" } }, { - "@id": "https://bioregistry.io/registry/toxoplasma", + "@id": "https://bioregistry.io/registry/icdo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ToxoDB" + "@value": "International Classification of Diseases for Oncology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma" + "@id": "https://registry.bio2kg.org/resource/icdo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA" + "@id": "https://bartoc.org/en/node/445" }, { - "@id": "https://registry.identifiers.org/registry/toxoplasma" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43" + }, + { + "@id": "http://aber-owl.net/ontology/ICDO" + }, + { + "@id": "http://www.wikidata.org/entity/P563" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://toxodb.org/toxo/" + "@id": "https://www.who.int/classifications/icd/adaptations/oncology/en/" + }, + "https://bioregistry.io/schema/#0000005": "9861/3", + "https://bioregistry.io/schema/#0000006": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1", + "https://bioregistry.io/schema/#0000008": "^[8-9]\\d{3}(/[0-3])?$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ICDO/12/icdo.owl" }, - "https://bioregistry.io/schema/#0000005": "TGME49_053730", - "https://bioregistry.io/schema/#0000006": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ICDO" + }, + { + "@value": "ICD-O" + } + ], + "https://bioregistry.io/schema/#0000024": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TGME49_053730" + "@id": "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=9861/3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "toxoplasma" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/omim", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-0643-3144", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simon Jupp" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jupp@ebi.ac.uk" + "@value": "icdo" } }, { - "@id": "https://www.obofoundry.org/ontology/hp", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qr6pqk", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/scdo", + "@id": "https://bioregistry.io/registry/co_359", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.", + "http://purl.org/dc/terms/description": "December 2019", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/scdodev/scdo-ontology" + "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sickle Cell Disease Ontology" + "@value": "Sunflower ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SCDO" - }, - { - "@id": "http://aber-owl.net/ontology/SCDO" - }, - { - "@id": "http://www.ontobee.org/ontology/SCDO" - }, - { - "@id": "https://www.obofoundry.org/ontology/scdo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kkq6pw" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" + "@id": "https://cropontology.org/ontology/CO_359" }, { - "@value": "obo" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_359" }, { - "@value": "ontology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scdontology.h3abionet.org/" + "@id": "https://cropontology.org/ontology/CO_359/Sunflower" }, - "https://bioregistry.io/schema/#0000005": "0000728", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SCDO_$1", + "https://bioregistry.io/schema/#0000005": "0000947", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_359:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/scdo.owl" + "@id": "https://cropontology.org/ontology/CO_359/Sunflower/owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ico" - }, - { - "@id": "https://bioregistry.io/registry/aro" - }, - { - "@id": "https://bioregistry.io/registry/symp" - }, - { - "@id": "https://bioregistry.io/registry/chmo" - }, - { - "@id": "https://bioregistry.io/registry/eupath" - }, - { - "@id": "https://bioregistry.io/registry/vo" - }, - { - "@id": "https://bioregistry.io/registry/gsso" - }, - { - "@id": "https://bioregistry.io/registry/hsapdv" - }, - { - "@id": "https://bioregistry.io/registry/pr" - }, - { - "@id": "https://bioregistry.io/registry/stato" - }, - { - "@id": "https://bioregistry.io/registry/sbo" - }, - { - "@id": "https://bioregistry.io/registry/exo" - }, - { - "@id": "https://bioregistry.io/registry/ido" - }, - { - "@id": "https://bioregistry.io/registry/opmi" - }, - { - "@id": "https://bioregistry.io/registry/idomal" - }, - { - "@id": "https://bioregistry.io/registry/apollosv" - }, - { - "@id": "https://bioregistry.io/registry/ogms" - }, - { - "@id": "https://bioregistry.io/registry/uo" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/hp" - }, - { - "@id": "https://bioregistry.io/registry/obi" - }, - { - "@id": "https://bioregistry.io/registry/doid" - }, - { - "@id": "https://bioregistry.io/registry/dron" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/vt" - }, - { - "@id": "https://bioregistry.io/registry/cmo" - }, - { - "@id": "https://bioregistry.io/registry/nbo" - }, - { - "@id": "https://bioregistry.io/registry/ncit" - }, - { - "@id": "https://bioregistry.io/registry/duo" - }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N81e62e4253624b5f99ab3c6a630b2315" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_359:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_359:0000947" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_359" + } + }, + { + "@id": "_:N81e62e4253624b5f99ab3c6a630b2315", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/registry/ecyano.experiment", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/mp" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/gaz" + "@id": "https://bioregistry.io/registry/ecyano" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2193-0704" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "E-cyanobacterium Experimental Data" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SCDO_", + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ecyano.experiment" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.e-cyanobacterium.org/experiments-repository/" + }, + "https://bioregistry.io/schema/#0000005": "18", + "https://bioregistry.io/schema/#0000006": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SCDO_0000728" + "@id": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=18" }, "https://bioregistry.io/schema/#0000029": { - "@value": "scdo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ecyano.experiment" } }, { - "@id": "http://aber-owl.net/ontology/BSPO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ligandbox", + "@id": "https://bioregistry.io/registry/co_366", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.", + "http://purl.org/dc/terms/description": "version Dec 2019", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LigandBox" + "@value": "Bambara groundnut ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox" + "@id": "https://cropontology.org/ontology/CO_366" }, { - "@id": "https://registry.identifiers.org/registry/ligandbox" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_366" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en" + "@id": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut" + }, + "https://bioregistry.io/schema/#0000005": "0000072", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_366:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut/owl" }, - "https://bioregistry.io/schema/#0000005": "D00001", - "https://bioregistry.io/schema/#0000006": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1", - "https://bioregistry.io/schema/#0000008": "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N778e445c07cd4361abbd089c44880ce0" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_366:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=D00001" + "@id": "https://cropontology.org/rdf/CO_366:0000072" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ligandbox" + "@value": "co_366" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPMI", + "@id": "_:N778e445c07cd4361abbd089c44880ce0", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/registry/semapv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Semantic Mapping Vocabulary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bartoc.org/en/node/20428" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mapping-commons.github.io/semantic-mapping-vocabulary/" + }, + "https://bioregistry.io/schema/#0000005": "LexicalMatching", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/semapv/vocab/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/mapping-commons/semantic-mapping-vocabulary/main/semapv.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7356-1779" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/semapv/vocab/", + "https://bioregistry.io/schema/#0000026": { + "@id": "http://www.wikidata.org/entity/Q115518213" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/semapv/vocab/LexicalMatching" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "semapv" } }, { - "@id": "https://bioregistry.io/registry/adw", + "@id": "https://www.obofoundry.org/ontology/tahh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/comptox", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ddpheno", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/dicty-phenotype-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal natural history and life history" + "@value": "Dictyostelium discoideum phenotype ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ADW" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno" }, { - "@id": "https://www.obofoundry.org/ontology/adw" + "@id": "http://aber-owl.net/ontology/DDPHENO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw" + "@id": "https://www.obofoundry.org/ontology/ddpheno" }, { - "@id": "https://fairsharing.org/FAIRsharing.t9fvdn" + "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ADW" + "@id": "http://www.ontobee.org/ontology/DDPHENO" }, { - "@id": "https://registry.identifiers.org/registry/adw" + "@id": "https://fairsharing.org/FAIRsharing.9c1p18" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ADW" + "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "ontology" }, { "@value": "life science" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.animaldiversity.org" + "@id": "http://dictybase.org/" }, - "https://bioregistry.io/schema/#0000005": "Lycalopex_vetulus", - "https://bioregistry.io/schema/#0000006": "https://animaldiversity.org/accounts/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z_a-z]+$", + "https://bioregistry.io/schema/#0000005": "0001417", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DDPHENO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ADW/2/adw.owl" + "@id": "http://purl.obolibrary.org/obo/ddpheno.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N2c447aacef584c2594724c5666a30b84" + "@id": "https://orcid.org/0000-0002-4532-2703" }, - "https://bioregistry.io/schema/#0000024": "https://animaldiversity.org/accounts/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DDPHENO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://animaldiversity.org/accounts/Lycalopex_vetulus" + "@id": "http://purl.obolibrary.org/obo/DDPHENO_0001417" }, "https://bioregistry.io/schema/#0000029": { - "@value": "adw" + "@value": "ddpheno" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "_:N2c447aacef584c2594724c5666a30b84", + "@id": "https://orcid.org/0000-0002-8461-9745", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Diversity Web technical staff" + "@value": "Marie-Angélique Laporte" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "adw_geeks@umich.edu" + "@value": "m.a.laporte@cgiar.org" } }, { - "@id": "http://aber-owl.net/ontology/MIAPA", + "@id": "http://www.wikidata.org/entity/P1391", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://www.wikidata.org/entity/P3519", + "@id": "https://orcid.org/0000-0002-0851-6883", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Jennifer C. Girón" + }, + { + "@value": "Jennifer C. Giron" + } + ], + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "entiminae@gmail.com" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y2qkst", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi", + "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio", + "@id": "https://bioregistry.io/registry/te", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Terminologia Embryologica" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P1693" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ifaa.unifr.ch/" + }, + "https://bioregistry.io/schema/#0000005": "E5.11.2.0.0.0.4", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "te" } }, { - "@id": "https://bioregistry.io/registry/bugbase.expt", + "@id": "https://fairsharing.org/FAIRsharing.4877h0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/pao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BugBase Expt" + "@value": "Plant Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bugbase.expt" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt" + "@id": "https://www.obofoundry.org/ontology/pao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bugs.sgul.ac.uk/E-BUGS" + "@id": "http://www.plantontology.org" }, - "https://bioregistry.io/schema/#0000005": "288", - "https://bioregistry.io/schema/#0000006": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=288" + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PAO_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1005-8383" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "bugbase.expt" + "@value": "pao" } }, { - "@id": "https://registry.identifiers.org/registry/iedb", + "@id": "https://bioportal.bioontology.org/ontologies/DOID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wkdjpb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bacdive", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/genprop", + "@id": "https://bioregistry.io/registry/metlin", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.", + "http://purl.org/dc/terms/description": "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genome Properties" + "@value": "Metabolite and Tandem Mass Spectrometry Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP" - }, - { - "@id": "https://registry.bio2kg.org/resource/jcvi.genprop" + "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN" }, { - "@id": "https://registry.identifiers.org/registry/genprop" + "@id": "https://www.re3data.org/repository/r3d100012311" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin" }, { - "@value": "classification" + "@id": "https://registry.identifiers.org/registry/metlin" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/interpro/genomeproperties/" + "@id": "http://masspec.scripps.edu/" }, - "https://bioregistry.io/schema/#0000005": "GenProp0699", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/genomeproperties/#$1", - "https://bioregistry.io/schema/#0000008": "^GenProp\\d+$", + "https://bioregistry.io/schema/#0000005": "1455", + "https://bioregistry.io/schema/#0000006": "http://metlin.scripps.edu/metabo_info.php?molid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/genomeproperties/#", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, + "https://bioregistry.io/schema/#0000024": "http://metlin.scripps.edu/metabo_info.php?molid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/interpro/genomeproperties/#GenProp0699" + "@id": "http://metlin.scripps.edu/metabo_info.php?molid=1455" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genprop" - } - }, - { - "@id": "http://www.wikidata.org/entity/P11956", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@value": "metlin" } }, { - "@id": "https://bioregistry.io/registry/sepio", + "@id": "https://bioregistry.io/registry/arrayexpress", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for representing the provenance of scientific claims and the evidence that supports them.", + "http://purl.org/dc/terms/description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/SEPIO-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scientific Evidence and Provenance Information Ontology" + "@value": "ArrayExpress" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO" + "@id": "https://registry.bio2kg.org/resource/arrayexpress" }, { - "@id": "http://aber-owl.net/ontology/SEPIO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SEPIO" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS" }, { - "@id": "https://www.obofoundry.org/ontology/sepio" + "@id": "https://www.re3data.org/repository/r3d100010222" }, { - "@id": "http://www.ontobee.org/ontology/SEPIO" + "@id": "https://registry.identifiers.org/registry/arrayexpress" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio" + "@id": "https://fairsharing.org/FAIRsharing.6k0kwd" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "nucleotide" }, { - "@value": "ontology" + "@value": "functional genomics" + }, + { + "@value": "expression" + }, + { + "@value": "microarray" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/monarch-initiative/SEPIO-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000048", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SEPIO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/sepio.owl" + "@id": "https://www.ebi.ac.uk/arrayexpress/" }, + "https://bioregistry.io/schema/#0000005": "E-MEXP-1712", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/arrayexpress/experiments/$1", + "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1048-5019" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SEPIO_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/arrayexpress/experiments/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SEPIO_0000048" + "@id": "https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-1712" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sepio" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cpc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RNAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/XAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8nq9t6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "arrayexpress" } }, { - "@id": "https://bioregistry.io/registry/hgnc.genefamily", + "@id": "https://bioregistry.io/registry/pdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.", + "http://purl.org/dc/terms/description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HGNC gene family" + "@value": "PDB Structure" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY" + "@id": "https://fairsharing.org/FAIRsharing.rs2815" }, { - "@id": "https://registry.identifiers.org/registry/hgnc.genefamily" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB" + }, + { + "@id": "http://edamontology.org/data_1127" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010910" + }, + { + "@id": "https://www.uniprot.org/database/DB-0172" + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbj" + }, + { + "@id": "http://www.wikidata.org/entity/P638" + }, + { + "@id": "https://registry.identifiers.org/registry/pdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "virology" + }, + { + "@value": "protein" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "structural biology" + }, + { + "@value": "proteomics" + }, + { + "@value": "structure" + }, + { + "@value": "epidemiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genenames.org" + "@id": "https://www.wwpdb.org/" }, - "https://bioregistry.io/schema/#0000005": "2029", - "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/genefamilies/set/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "2gc4", + "https://bioregistry.io/schema/#0000006": "https://www.wwpdb.org/pdb?id=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/hgnc.genegroup" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6690-5863" }, "https://bioregistry.io/schema/#0000023": [ { - "@value": "GFAM" + "@value": "RCSB_PDB" }, { - "@value": "HGNC_GROUP" + "@value": "pdbe" }, { - "@value": "hgnc.family" + "@value": "wwpdb" + }, + { + "@value": "pdbj" } ], - "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/genefamilies/set/", + "https://bioregistry.io/schema/#0000024": "https://www.wwpdb.org/pdb?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genenames.org/cgi-bin/genefamilies/set/2029" + "@id": "https://www.wwpdb.org/pdb?id=2gc4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hgnc.genefamily" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012311", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://aber-owl.net/ontology/dcelements", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0071", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pocketome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013295", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "pdb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO", + "@id": "https://bioregistry.io/registry/galen", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GALEN" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/GALEN" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GALEN" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.opengalen.org" + }, + "https://bioregistry.io/schema/#0000005": "MagnitudeValueType", + "https://bioregistry.io/schema/#0000006": "http://www.co-ode.org/ontologies/galen#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/GALEN/1/galen.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N079a0021d80a4a12a1492a0b06b42da6" + }, + "https://bioregistry.io/schema/#0000024": "http://www.co-ode.org/ontologies/galen#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.co-ode.org/ontologies/galen#MagnitudeValueType" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "galen" } }, { - "@id": "https://www.uniprot.org/database/DB-0148", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "_:N079a0021d80a4a12a1492a0b06b42da6", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Julian Seidenberg" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "j@deltaflow.com" } }, { - "@id": "https://www.uniprot.org/database/DB-0041", + "@id": "https://www.uniprot.org/database/DB-0095", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/topfind", + "@id": "https://registry.identifiers.org/registry/string", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/polbase", + "@id": "https://bioregistry.io/registry/ogsf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.", + "http://purl.org/dc/terms/description": "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/linikujp/OGSF" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PolBase" + "@value": "Ontology of Genetic Susceptibility Factor" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/polbase" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase" + "@id": "https://bioportal.bioontology.org/ontologies/OGSF" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF" }, { - "@id": "https://fairsharing.org/FAIRsharing.s9ztmd" + "@id": "https://fairsharing.org/FAIRsharing.egv2cz" + }, + { + "@id": "http://aber-owl.net/ontology/OGSF" + }, + { + "@id": "http://www.ontobee.org/ontology/OGSF" + }, + { + "@id": "https://www.obofoundry.org/ontology/ogsf" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biochemistry" + "@value": "genetics" }, { - "@value": "genetics" + "@value": "epidemiology" + }, + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://polbase.neb.com/" + "@id": "https://github.com/linikujp/OGSF" }, - "https://bioregistry.io/schema/#0000005": "19-T4", - "https://bioregistry.io/schema/#0000006": "https://polbase.neb.com/polymerases/$1#sequences", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9]+$", + "https://bioregistry.io/schema/#0000005": "0000025", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGSF_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ogsf.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5379-5359" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGSF_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OGSF_0000025" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ogsf" + } + }, + { + "@id": "https://bioregistry.io/registry/rpcec", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cuban Registry of Clinical Trials" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rpcec.sld.cu/en/home" + }, + "https://bioregistry.io/schema/#0000005": "RPCEC00000423", + "https://bioregistry.io/schema/#0000006": "https://rpcec.sld.cu/en/trials/$1", + "https://bioregistry.io/schema/#0000008": "^RPCEC\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/polbase:", + "https://bioregistry.io/schema/#0000024": "https://rpcec.sld.cu/en/trials/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://polbase.neb.com/polymerases/19-T4#sequences" + "@id": "https://rpcec.sld.cu/en/trials/RPCEC00000423" }, "https://bioregistry.io/schema/#0000029": { - "@value": "polbase" + "@value": "rpcec" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb", + "@id": "https://orcid.org/0000-0002-1508-8469", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Daniel Gautheret" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "daniel.gautheret@u-psud.fr" + } + }, + { + "@id": "https://bioregistry.io/registry/ribocentre", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ribocentre is designed to contain comprehensive information of all natural ribozymes.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ribocentre/ribocentre.github.io" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ribocentre" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ribocentre.org/" + }, + "https://bioregistry.io/schema/#0000005": "hammer", + "https://bioregistry.io/schema/#0000006": "https://www.ribocentre.org/docs/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2121-365X" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ribocenter" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ribocentre.org/docs/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ribocentre.org/docs/hammer" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ribocentre" } }, { - "@id": "https://bioregistry.io/registry/tol", + "@id": "https://bioregistry.io/registry/ricenetdb.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things.", + "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tree of Life Web Project" + "@value": "RiceNetDB Reaction" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/400" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol" - }, - { - "@id": "https://registry.identifiers.org/registry/tol" + "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction" }, { - "@id": "http://www.wikidata.org/entity/P5221" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://tolweb.org/tree/" + "@id": "http://bis.zju.edu.cn/ricenetdb" }, - "https://bioregistry.io/schema/#0000005": "98034", - "https://bioregistry.io/schema/#0000006": "http://tolweb.org/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "OSR0818", + "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^OSR\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "tol.webproj" - }, - "https://bioregistry.io/schema/#0000024": "http://tolweb.org/", + "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://tolweb.org/98034" + "@id": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=OSR0818" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tol" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/irefweb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "ricenetdb.reaction" } }, { - "@id": "https://bioregistry.io/registry/cellopub", + "@id": "https://bioregistry.io/registry/aspgd.locus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cellosaurus identifeirs for publications, like Pubmed", + "http://purl.org/dc/terms/description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellosaurus Publication" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub" + "@value": "Aspergillus Genome Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/aspgd.locus" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://web.expasy.org/cellosaurus/" + "@id": "http://www.aspgd.org/" }, - "https://bioregistry.io/schema/#0000005": "CLPUB00496", - "https://bioregistry.io/schema/#0000006": "https://web.expasy.org/cellosaurus/cellopub/$1", - "https://bioregistry.io/schema/#0000008": "^CLPUB\\d+$", + "https://bioregistry.io/schema/#0000005": "ASPL0000349247", + "https://bioregistry.io/schema/#0000006": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://web.expasy.org/cellosaurus/cellopub/", + "https://bioregistry.io/schema/#0000024": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://web.expasy.org/cellosaurus/cellopub/CLPUB00496" + "@id": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=ASPL0000349247" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cellopub" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/datf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "aspgd.locus" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary", + "@id": "https://fairsharing.org/FAIRsharing.27w8k0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/lincs.cell", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/schema/#0000027", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "An expanded example URL for a resource or metaresource." + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has resource example" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": { + "@id": "http://rdfs.org/ns/void#exampleResource" } }, { - "@id": "https://www.re3data.org/repository/r3d100010228", + "@id": "https://www.re3data.org/repository/r3d100010405", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://aber-owl.net/ontology/ONTOAVIDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0003-1719-1651", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Raimond Winslow" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rwinslow@jhu.edu" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://edamontology.org/data_3757", + "@id": "http://agroportal.lirmm.fr/ontologies/EDAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/jaxmice", + "@id": "https://bioregistry.io/registry/dommino", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.", + "http://purl.org/dc/terms/description": "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "JAX Mice" + "@value": "Database of Macromolecular Interactions" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/jaxmice" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE" + "@id": "https://registry.identifiers.org/registry/dommino" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://jaxmice.jax.org/" + "@id": "http://korkinlab.org/dommino" }, - "https://bioregistry.io/schema/#0000005": "005012", - "https://bioregistry.io/schema/#0000006": "http://jaxmice.jax.org/strain/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "2GC4", + "https://bioregistry.io/schema/#0000006": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/jaxmice:", + "https://bioregistry.io/schema/#0000024": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://jaxmice.jax.org/strain/005012.html" + "@id": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/2GC4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jaxmice" + "@value": "dommino" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB", + "@id": "https://bioregistry.io/registry/ccdc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CCDC Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ccdc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ccdc.cam.ac.uk/" + }, + "https://bioregistry.io/schema/#0000005": "1829126", + "https://bioregistry.io/schema/#0000006": "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG", + "https://bioregistry.io/schema/#0000008": "^\\d{6,7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ccdc:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:1829126&sid=IDORG" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ccdc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4fa657", + "@id": "https://registry.bio2kg.org/resource/subtiwiki", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365", + "@id": "http://agroportal.lirmm.fr/ontologies/ATOL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://orcid.org/0000-0003-4654-1403", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Will Simpson" + "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/reaxys", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "w.simpson@orcid.org" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Reaxys" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P1579" + }, + { + "@id": "http://edamontology.org/data_1003" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.reaxys.com" + }, + "https://bioregistry.io/schema/#0000005": "1257009", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "Reaxys" + }, + { + "@value": "Beilstein" + } + ], + "https://bioregistry.io/schema/#0000029": { + "@value": "reaxys" } }, { - "@id": "https://www.re3data.org/repository/r3d100012733", + "@id": "https://bioregistry.io/registry/paxdb.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PaxDb Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein" + }, + { + "@id": "https://registry.identifiers.org/registry/paxdb.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pax-db.org/" + }, + "https://bioregistry.io/schema/#0000005": "977869", + "https://bioregistry.io/schema/#0000006": "http://pax-db.org/#!protein/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://pax-db.org/#!protein/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pax-db.org/#!protein/977869" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "paxdb.protein" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia", + "@id": "http://www.wikidata.org/entity/P1421", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/civic.vgid", + "@id": "https://bioregistry.io/registry/bido", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/bido" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bibliometric Data Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.d7f0a9" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/bido" + }, + "https://bioregistry.io/schema/#0000005": "CategorialBibliometricData", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/bido/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/bido/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/bido/CategorialBibliometricData" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bido" } }, { - "@id": "https://orcid.org/0000-0003-3909-7201", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8ktkqy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.v8se8r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/ICEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/gard", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jörg Overmann" + "@value": "Genetic and Rare Diseases Information Center" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "joerg.overmann@dsmz.de" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P4317" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rarediseases.info.nih.gov/diseases" + }, + "https://bioregistry.io/schema/#0000005": "6038", + "https://bioregistry.io/schema/#0000006": "https://rarediseases.info.nih.gov/diseases/$1/index", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "GARD" + }, + { + "@value": "Genetic and Rare Diseases Information Center" + } + ], + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gard:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://rarediseases.info.nih.gov/diseases/6038/index" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gard" } }, { - "@id": "https://orcid.org/0000-0001-9504-189X", + "@id": "https://bioregistry.io/registry/ecacc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Issaku Yamada" + "@value": "European Collection of Authenticated Cell Culture" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx" + }, + "https://bioregistry.io/schema/#0000005": "90062901", + "https://bioregistry.io/schema/#0000006": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=90062901" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecacc" + } + }, + { + "@id": "https://orcid.org/0000-0003-3212-7826", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hannele Laivuori" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "issaku@noguchi.or.jp" + "@value": "hannele.laivuori@helsinki.fi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.w9jvbt", + "@id": "https://www.obofoundry.org/ontology/cido", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ehe3yp", + "@id": "https://bioregistry.io/registry/nrfc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Repository of Fish Cell Lines" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mail.nbfgr.res.in/nrfc/index.php" + }, + "https://bioregistry.io/schema/#0000005": "NRFC051", + "https://bioregistry.io/schema/#0000008": "^NRFC\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "nrfc" } }, { - "@id": "http://www.ontobee.org/ontology/FOBI", + "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/pathoplant", + "@id": "https://bioregistry.io/registry/cellopub", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cellosaurus identifeirs for publications, like Pubmed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cellosaurus Publication" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://web.expasy.org/cellosaurus/" + }, + "https://bioregistry.io/schema/#0000005": "CLPUB00496", + "https://bioregistry.io/schema/#0000006": "https://web.expasy.org/cellosaurus/cellopub/$1", + "https://bioregistry.io/schema/#0000008": "^CLPUB\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://web.expasy.org/cellosaurus/cellopub/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://web.expasy.org/cellosaurus/cellopub/CLPUB00496" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cellopub" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo", + "@id": "https://bioregistry.io/registry/biro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/biro" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bibliographic Reference Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.99da5f" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/biro" + }, + "https://bioregistry.io/schema/#0000005": "BibliographicRecord", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/biro/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/biro/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/biro/BibliographicRecord" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biro" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012176", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/ubprop", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Uberon Property" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "UBPROP" + }, + { + "@value": "UBREL" + } + ], + "https://bioregistry.io/schema/#0000029": { + "@value": "ubprop" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE", + "@id": "http://edamontology.org/data_2615", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/fbbi", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN", + "@id": "https://www.uniprot.org/database/DB-0254", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/co_333", + "@id": "https://bioregistry.io/registry/conoserver", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.", + "http://purl.org/dc/terms/description": "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Beet Ontology ontology" + "@value": "ConoServer" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_333" + "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER" }, { - "@id": "https://fairsharing.org/FAIRsharing.af5655" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_333" + "@id": "https://www.uniprot.org/database/DB-0156" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333" + "@id": "https://registry.identifiers.org/registry/conoserver" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y00hz4" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "neurophysiology" }, { - "@value": "botany" + "@value": "statistics" }, { - "@value": "plant breeding" + "@value": "synthetic biology" }, { "@value": "life science" - }, - { - "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology" + "@id": "http://www.conoserver.org/" }, - "https://bioregistry.io/schema/#0000005": "3000045", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_333:$1", + "https://bioregistry.io/schema/#0000005": "2639", + "https://bioregistry.io/schema/#0000006": "http://www.conoserver.org/?page=card&table=protein&id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology/owl" - }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N5a3da52228154c328228750974332655" + "@id": "https://orcid.org/0000-0003-0007-6796" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_333:", + "https://bioregistry.io/schema/#0000024": "http://www.conoserver.org/?page=card&table=protein&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_333:3000045" + "@id": "http://www.conoserver.org/?page=card&table=protein&id=2639" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_333" - } - }, - { - "@id": "_:N5a3da52228154c328228750974332655", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "conoserver" } }, { - "@id": "http://www.ontobee.org/ontology/MAXO", + "@id": "https://registry.identifiers.org/registry/funderregistry", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID", + "@id": "https://registry.bio2kg.org/resource/rna_sstrand", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2b04ae", + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/rdo", + "@id": "https://bioregistry.io/registry/beetlebase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms.", + "http://purl.org/dc/terms/description": "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RGD Disease Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "Tribolium Genome Database -- Insertion" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010921" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h5f091" + }, + { + "@id": "https://registry.identifiers.org/registry/beetlebase" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE" + }, + { + "@id": "https://registry.bio2kg.org/resource/beetlebase" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "computational biology" + }, + { + "@value": "genome" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ratmine.mcw.edu/ontology/disease/" - }, - "https://bioregistry.io/schema/#0000005": "9002859", - "https://bioregistry.io/schema/#0000006": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.owl" + "@id": "http://beetlebase.org/" }, + "https://bioregistry.io/schema/#0000005": "TC010103", + "https://bioregistry.io/schema/#0000006": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1", + "https://bioregistry.io/schema/#0000008": "^TC\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#", + "https://bioregistry.io/schema/#0000024": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#9002859" + "@id": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=TC010103" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rdo" + "@value": "beetlebase" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS", + "@id": "https://bioregistry.io/metaregistry/biocontext/GRID", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0253", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OCI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-7954-7057", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Guy Cochrane" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "datasubs@ebi.ac.uk" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323", + "@id": "https://bartoc.org/en/node/528", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/casspc", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://fairsharing.org/FAIRsharing.y2qws7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eschmeyer's Catalog of Fishes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp" - }, - "https://bioregistry.io/schema/#0000005": "5359", - "https://bioregistry.io/schema/#0000006": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=5359" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "casspc" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/biosimulations", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools.", + "@id": "https://bioregistry.io/metaregistry/biocontext/OTL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010775", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/chembl.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Chemistry resources", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/chembl" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "biosimulations" + "@value": "ChEMBL database of bioactive drug-like small molecules - Cell lines section" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.re3data.org/repository/r3d100013361" + "@value": "cell lines" }, { - "@id": "https://registry.identifiers.org/registry/biosimulations" + "@value": "bioactivities" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icahn.mssm.edu/" + "@id": "https://www.ebi.ac.uk/chembldb" }, - "https://bioregistry.io/schema/#0000005": "Yeast-cell-cycle-Irons-J-Theor-Biol-2009", - "https://bioregistry.io/schema/#0000006": "https://biosimulations.org/projects/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_-]{3,}$", + "https://bioregistry.io/schema/#0000005": "CHEMBL3307800", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1", + "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biosimulations.org/projects/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0294-5484" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ChEMBL-Cells" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/cell_line_report_card/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biosimulations.org/projects/Yeast-cell-cycle-Irons-J-Theor-Biol-2009" + "@id": "https://www.ebi.ac.uk/chembl/cell_line_report_card/CHEMBL3307800" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biosimulations" + "@value": "chembl.cell" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO", + "@id": "https://registry.identifiers.org/registry/covid19", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL", + "@id": "https://bioportal.bioontology.org/ontologies/MIXS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene", + "@id": "http://edamontology.org/data_2611", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/mco", + "@id": "http://aber-owl.net/ontology/FLOPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/rbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Microbial Conditions Ontology is an ontology...", + "http://purl.org/dc/terms/description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" + "@id": "https://github.com/Radiobiology-Informatics-Consortium/RBO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Microbial Conditions Ontology" + "@value": "Radiation Biology Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/MCO" + "@id": "http://www.ontobee.org/ontology/RBO" }, { - "@id": "http://aber-owl.net/ontology/MCO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MCO" + "@id": "https://bioportal.bioontology.org/ontologies/RBO" }, { - "@id": "https://www.obofoundry.org/ontology/mco" + "@id": "http://aber-owl.net/ontology/RBO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco" + "@id": "https://www.obofoundry.org/ontology/rbo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" + "@id": "https://github.com/Radiobiology-Informatics-Consortium/RBO" }, - "https://bioregistry.io/schema/#0000005": "0000858", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MCO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "00000105", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RBO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6,8}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mco.owl" + "@id": "http://purl.obolibrary.org/obo/rbo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/omp" - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/uo" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://bioregistry.io/registry/envo" }, { - "@id": "https://bioregistry.io/registry/zeco" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/registry/chmo" }, { "@id": "https://bioregistry.io/registry/obi" }, { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/micro" - }, - { - "@id": "https://bioregistry.io/registry/clo" - }, - { - "@id": "https://bioregistry.io/registry/peco" - }, - { - "@id": "https://bioregistry.io/registry/omit" + "@id": "https://bioregistry.io/registry/pato" }, { "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/ncit" } ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0142-5591" + "@id": "https://orcid.org/0000-0003-4312-9552" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MCO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RBO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MCO_0000858" + "@id": "http://purl.obolibrary.org/obo/RBO_00000105" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mco" + "@value": "rbo" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound", + "@id": "https://bioportal.bioontology.org/ontologies/CL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/gnps.task", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://edamontology.org/data_2669", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dbg2introns", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/aop.stressor", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)", + "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Global Natural Products Social Molecular Networking Task" + "@value": "AOPWiki (Stressor)" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor" + }, + { + "@id": "https://registry.identifiers.org/registry/aop.stressor" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gnps.ucsd.edu/" + "@id": "https://aopwiki.org/" }, - "https://bioregistry.io/schema/#0000005": "4b848c342a4f4abc871bdf8a09a60807", - "https://bioregistry.io/schema/#0000006": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1", - "https://bioregistry.io/schema/#0000008": "^[a-f0-9]+$", + "https://bioregistry.io/schema/#0000005": "9", + "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/stressors/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7647-6097" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", + "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/stressors/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=4b848c342a4f4abc871bdf8a09a60807" + "@id": "https://aopwiki.org/stressors/9" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gnps.task" + "@value": "aop.stressor" } }, { - "@id": "https://bioregistry.io/registry/reto", + "@id": "https://bioregistry.io/registry/topfind", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Regulation of Transcription", + "http://purl.org/dc/terms/description": "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Regulation of Transcription Ontology" + "@value": "TopFind" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RETO" + "@id": "https://registry.identifiers.org/registry/topfind" }, { - "@id": "http://aber-owl.net/ontology/RETO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind" }, { - "@id": "https://fairsharing.org/FAIRsharing.4qyf0f" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "transcriptomics" + "@id": "https://fairsharing.org/FAIRsharing.rkpmhn" }, { - "@value": "ontology" + "@id": "https://www.re3data.org/repository/r3d100012721" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.semantic-systems-biology.org/apo" + "@id": "https://topfind.clip.msl.ubc.ca" }, - "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.bio.ntnu.no/ontology/ReTO/reto.owl" + "https://bioregistry.io/schema/#0000005": "Q9UKQ2", + "https://bioregistry.io/schema/#0000006": "http://clipserve.clip.ubc.ca/topfind/proteins/$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8375243ef7764e1790fa4dedefde6ea2" + "https://bioregistry.io/schema/#0000024": "http://clipserve.clip.ubc.ca/topfind/proteins/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://clipserve.clip.ubc.ca/topfind/proteins/Q9UKQ2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "reto" + "@value": "topfind" } }, { - "@id": "_:N8375243ef7764e1790fa4dedefde6ea2", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vladimir Mironov" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "vladimir.n.mironov@gmail.com" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.k5k0yh", + "@id": "https://bioregistry.io/registry/rfc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Legacy site for IETF RFC proposals", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Internet Standard -- IETF Request for Comments" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ietf.org/" + }, + "https://bioregistry.io/schema/#0000005": "5013", + "https://bioregistry.io/schema/#0000006": "https://tools.ietf.org/rfc/rfc$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://tools.ietf.org/rfc/rfc", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://tools.ietf.org/rfc/rfc5013" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rfc" } }, { - "@id": "https://bioregistry.io/registry/oae", + "@id": "https://bioregistry.io/registry/goldbook", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.", + "http://purl.org/dc/terms/description": "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OAE-ontology/OAE" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Adverse Events" + "@value": "IUPAC Gold Book Compendium of Chemical Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.tw4q8x" - }, - { - "@id": "http://aber-owl.net/ontology/OAE" - }, - { - "@id": "https://www.obofoundry.org/ontology/oae" - }, - { - "@id": "http://www.ontobee.org/ontology/OAE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OAE" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae" + "@id": "https://bartoc.org/en/node/1884" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OAE" + "@id": "http://www.wikidata.org/entity/P4732" } ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://goldbook.iupac.org" + }, + "https://bioregistry.io/schema/#0000005": "G02681", + "https://bioregistry.io/schema/#0000006": "https://goldbook.iupac.org/terms/view/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{1,2}\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://goldbook.iupac.org/terms/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://goldbook.iupac.org/terms/view/G02681" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "goldbook" + } + }, + { + "@id": "https://bioregistry.io/registry/panorama", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Panorama Public" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q" + }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "life science" }, { - "@value": "ontology" + "@value": "proteomics" }, { - "@value": "biomedical science" + "@value": "metabolomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OAE-ontology/OAE/" - }, - "https://bioregistry.io/schema/#0000005": "0002959", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OAE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/oae.owl" + "@id": "https://panoramaweb.org" }, + "https://bioregistry.io/schema/#0000005": "FxnI151FMs", + "https://bioregistry.io/schema/#0000006": "https://panoramaweb.org/$1.url", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "@id": "https://orcid.org/0000-0002-9575-0255" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OAE_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/panorama:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OAE_0002959" + "@id": "https://panoramaweb.org/FxnI151FMs.url" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oae" + "@value": "panorama" } }, { - "@id": "https://bioregistry.io/registry/sabiork.compound", + "@id": "https://bioregistry.io/registry/unists", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information.", + "http://purl.org/dc/terms/description": "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SABIO-RK Compound" + "@value": "Database of Sequence Tagged Sites" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/sabiork.compound" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS" + }, + { + "@id": "http://edamontology.org/data_2389" + }, + { + "@id": "https://registry.identifiers.org/registry/unists" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS" + }, + { + "@id": "https://registry.bio2kg.org/resource/unists" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sabiork.h-its.org/" + "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists" }, - "https://bioregistry.io/schema/#0000005": "75", - "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/newSearch?q=$1", + "https://bioregistry.io/schema/#0000005": "456789", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/newSearch?q=", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://sabiork.h-its.org/newSearch?q=75" + "@id": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=456789" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sabiork.compound" + "@value": "unists" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3ngg40", + "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.hsbpq3", + "@id": "https://fairsharing.org/FAIRsharing.c55d5e", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP", + "@id": "http://edamontology.org/data_3021", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/phosphosite.protein", + "@id": "https://www.re3data.org/repository/r3d100010414", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://orcid.org/0000-0002-7753-9042", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/metatlas.reaction" - }, - { - "@id": "https://bioregistry.io/registry/metatlas" - }, - { - "@id": "https://bioregistry.io/registry/metatlas.metabolite" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mihail Anton" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mihail.anton@chalmers.se" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-CV", + "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/BFO", + "@id": "http://www.wikidata.org/entity/P5221", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.obofoundry.org/ontology/cvdo", + "@id": "https://www.uniprot.org/database/DB-0089", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/bgee.stage", + "@id": "http://www.ontobee.org/ontology/AISM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbsum", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/cutg", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.", + "http://purl.org/dc/terms/description": "Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bgee stage" + "@value": "Codon Usage Tabulated from GenBank" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/cutg" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/bgee.stage" + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.kazusa.or.jp/codon/" + }, + "https://bioregistry.io/schema/#0000005": "9606", + "https://bioregistry.io/schema/#0000006": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=9606" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cutg" + } + }, + { + "@id": "https://bioregistry.io/registry/chembl.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/chembl" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ChEMBL" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P592" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound" + }, + { + "@id": "http://edamontology.org/data_2646" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND" + }, + { + "@id": "https://registry.identifiers.org/registry/chembl.compound" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bgee.unil.ch/bgee/bgee" + "@id": "https://www.ebi.ac.uk/chembldb/" }, - "https://bioregistry.io/schema/#0000005": "HsapDO:0000004", - "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1", - "https://bioregistry.io/schema/#0000008": "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=", + "https://bioregistry.io/schema/#0000005": "CHEMBL465070", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/compound/inspect/$1", + "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0294-5484" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/compound/inspect/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=HsapDO:0000004" + "@id": "https://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL465070" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bgee.stage" + "@value": "chembl.compound" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP", + "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dk451a", + "@id": "https://bioregistry.io/registry/ensembl.plant", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ensembl Plants" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/ensembl.plant" + }, + { + "@id": "https://registry.identifiers.org/registry/ensembl.plant" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://plants.ensembl.org/" + }, + "https://bioregistry.io/schema/#0000005": "AT1G73965", + "https://bioregistry.io/schema/#0000006": "https://plants.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\.\\d+)?(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://plants.ensembl.org/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://plants.ensembl.org/id/AT1G73965" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensembl.plant" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP", + "@id": "https://bioregistry.io/registry/snomedct", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SNOMED CT (International Edition)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed" + }, + { + "@id": "http://www.wikidata.org/entity/P5806" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT" + }, + { + "@id": "https://registry.identifiers.org/registry/snomedct" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d88s6e" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct" + }, + { + "@id": "https://registry.bio2kg.org/resource/snomedct" + }, + { + "@id": "http://aber-owl.net/ontology/SNOMEDCT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "medicine" + }, + { + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "preclinical studies" + }, + { + "@value": "health science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.snomedbrowser.com/" + }, + "https://bioregistry.io/schema/#0000005": "284196006", + "https://bioregistry.io/schema/#0000006": "http://snomed.info/id/$1", + "https://bioregistry.io/schema/#0000008": "^(\\w+)?\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://snomed.info/sct/900000000000207008/version/20200131" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Ncb371b9251d84927994678e142aadc0e" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "SNOMEDCT" + }, + { + "@value": "SNOMEDCT_US_2021_03_01" + }, + { + "@value": "SNOMEDCT_US_2016_03_01" + }, + { + "@value": "SNOMEDCT_US_2022_07_31" + }, + { + "@value": "SNOMEDCT_US_2015_03_01" + }, + { + "@value": "SNOMEDCT_2020_03_01" + }, + { + "@value": "SNOMEDCT_2005_07_31" + }, + { + "@value": "SNOMEDCTCT_2019_03_01" + }, + { + "@value": "SNOMEDCT_US_2020_09_01" + }, + { + "@value": "SNOMEDCT_US_2021_09_01" + }, + { + "@value": "SNOMEDCT_US_2023_02_28" + }, + { + "@value": "SNOMEDCT_US" + }, + { + "@value": "SNOMEDCTCT" + }, + { + "@value": "SNOMED" + }, + { + "@value": "SNOMEDCT_US_2018_09_01" + }, + { + "@value": "SNOWMEDCT_US" + }, + { + "@value": "SNOWMEDCT_US_2018_03_01" + }, + { + "@value": "SNOMEDCT_US_2022_12_31" + }, + { + "@value": "SCTID_2010_1_31" + }, + { + "@value": "SNOMEDCT_2010_1_31" + }, + { + "@value": "SNOMEDCT_US_2021_07_31" + }, + { + "@value": "SNOMECT" + }, + { + "@value": "SCTID" + }, + { + "@value": "SNOMEDCT_US_2018_03_01" + }, + { + "@value": "SNOMEDCT_US_2019_03_01" + }, + { + "@value": "SNOMEDCT_US_2022_09_01" + }, + { + "@value": "SNOMEDCTCT_2018_03_01" + }, + { + "@value": "SNOMEDCT_US_2020_03_01" + }, + { + "@value": "SNOWMEDCT" + }, + { + "@value": "SNOMEDCT_US_2019_09_01" + }, + { + "@value": "SNOMED_CT_US_2018_03_01" + }, + { + "@value": "SNOMED_CT" + } + ], + "https://bioregistry.io/schema/#0000024": "http://snomed.info/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://snomed.info/id/284196006" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "snomedct" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "_:Ncb371b9251d84927994678e142aadc0e", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NLM Customer Service" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "custserv@nlm.nih.gov" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.glycan", + "@id": "https://bioregistry.io/registry/puro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/pro" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Publishing Roles Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.3e88d6" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/pro" + }, + "https://bioregistry.io/schema/#0000005": "RoleInTime", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/pro/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/pro/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/pro/RoleInTime" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "puro" } }, { - "@id": "https://www.obofoundry.org/ontology/vhog", + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/registry/civic.vid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/civic" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC variant" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/civic.vid" + }, + { + "@id": "http://www.wikidata.org/entity/P3329" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "12", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/variant/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/variant/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://civicdb.org/links/variant/12" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "civic.vid" } }, { - "@id": "http://aber-owl.net/ontology/AFO", + "@id": "http://www.wikidata.org/entity/P351", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3", + "@id": "https://fairsharing.org/FAIRsharing.p1sejz", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0001-8732-0928", + "@id": "https://bioregistry.io/registry/noaa.cameo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "chemical in the database supplied by National Oceanic and Atmospheric Administration", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eric W. Deutsch" + "@value": "CAMEO Chemicals ID" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "edeutsch@systemsbiology.org" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P11931" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cameochemicals.noaa.gov" + }, + "https://bioregistry.io/schema/#0000005": "19757", + "https://bioregistry.io/schema/#0000006": "https://cameochemicals.noaa.gov/chemical/$1", + "https://bioregistry.io/schema/#0000008": "^\\d*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cameochemicals.noaa.gov/chemical/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cameochemicals.noaa.gov/chemical/19757" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "noaa.cameo" } }, { - "@id": "http://edamontology.org/data_2298", + "@id": "https://bioregistry.io/metaregistry/biocontext/TTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/dbd", + "@id": "https://bioregistry.io/registry/biosimulations", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "biosimulations" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100013361" + }, + { + "@id": "https://registry.identifiers.org/registry/biosimulations" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://icahn.mssm.edu/" + }, + "https://bioregistry.io/schema/#0000005": "Yeast-cell-cycle-Irons-J-Theor-Biol-2009", + "https://bioregistry.io/schema/#0000006": "https://biosimulations.org/projects/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_-]{3,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biosimulations.org/projects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biosimulations.org/projects/Yeast-cell-cycle-Irons-J-Theor-Biol-2009" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biosimulations" } }, { - "@id": "http://edamontology.org/data_3952", + "@id": "http://aber-owl.net/ontology/PATO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/sep", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.uniprot.org/database/DB-0239", + "@id": "https://www.re3data.org/repository/r3d100010666", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/cellosaurus.resource", + "@id": "https://bioregistry.io/registry/gramene.growthstage", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The set of prefixes used in the Cellosaurus resource", + "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellosaurus Registry" + "@value": "Gramene Growth Stage Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA" + }, + { + "@id": "https://registry.identifiers.org/registry/gro" + }, + { + "@id": "https://www.obofoundry.org/ontology/gro" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE" + }, + { + "@id": "https://registry.bio2kg.org/resource/gramene.po" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "cell lines" + "@value": "ontology" }, { - "@value": "cells" + "@value": "anatomy" }, { - "@value": "registry" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://web.expasy.org/cellosaurus/" + "@id": "http://www.gramene.org/plant_ontology/" }, - "https://bioregistry.io/schema/#0000005": "4DN", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/cellosaurus/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/cellosaurus/", + "https://bioregistry.io/schema/#0000005": "0007133", + "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/ontology/search?id=GRO:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nc976beb3ec914342b8df47f37d623366" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "gro-cpga" + }, + { + "@value": "cpga" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/ontology/search?id=GRO:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/4DN" + "@id": "http://www.gramene.org/db/ontology/search?id=GRO:0007133" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cellosaurus.resource" + "@value": "gramene.growthstage" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "_:Nc976beb3ec914342b8df47f37d623366", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plant Ontology Administrators" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "po-discuss@plantontology.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam", + "@id": "https://bioregistry.io/metaregistry/biocontext/PPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/vario", + "@id": "https://bioregistry.io/registry/npass", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data.\n", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Natural Product Activity and Species Source Database" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bidd.group/NPASS/" + }, + "https://bioregistry.io/schema/#0000005": "NPC139585", + "https://bioregistry.io/schema/#0000008": "^NPC\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "npass" } }, { - "@id": "http://www.wikidata.org/entity/P7807", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.obofoundry.org/ontology/gecko", + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ark", + "@id": "https://orcid.org/0000-0002-5171-1668", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Urmas Kõljalg" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "urmas.koljalg@ut.ee" + } + }, + { + "@id": "https://bioregistry.io/registry/sibo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver.", + "http://purl.org/dc/terms/description": "Social Behavior in insects", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/sibo" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Archival Resource Key" + "@value": "Social Insect Behavior Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark" + "@id": "http://www.ontobee.org/ontology/SIBO" }, { - "@id": "https://fairsharing.org/FAIRsharing.f928f1" + "@id": "https://bioportal.bioontology.org/ontologies/SIBO" }, { - "@id": "https://registry.identifiers.org/registry/ark" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARK" + "@id": "https://www.obofoundry.org/ontology/sibo" + }, + { + "@id": "http://aber-owl.net/ontology/SIBO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q09hck" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" + "@value": "biology" }, { - "@value": "data management" + "@value": "ontology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://arks.org" + "@id": "https://github.com/obophenotype/sibo" }, - "https://bioregistry.io/schema/#0000005": "/53355/cl010066723", - "https://bioregistry.io/schema/#0000006": "http://n2t.net/ark:$1", - "https://bioregistry.io/schema/#0000008": "^/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7604-8041" + "https://bioregistry.io/schema/#0000005": "0000509", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SIBO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/sibo.owl" }, - "https://bioregistry.io/schema/#0000024": "http://n2t.net/ark:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://n2t.net/ark:/53355/cl010066723" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SIBO_", "https://bioregistry.io/schema/#0000029": { - "@value": "ark" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "sibo" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_322", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO", + "@id": "http://aber-owl.net/ontology/NMR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-2193-0704", + "@id": "https://bioregistry.io/registry/ohpi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OHPI/ohpi" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jade Hotchkiss" + "@value": "Ontology of Host Pathogen Interactions" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "giant.plankton@gmail.com" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/ohpi" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi" + }, + { + "@id": "http://www.ontobee.org/ontology/OHPI" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHPI" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6" + }, + { + "@id": "http://aber-owl.net/ontology/OHPI" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/OHPI/ohpi" + }, + "https://bioregistry.io/schema/#0000005": "9001411", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHPI_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ohpi.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5159-414X" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHPI_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OHPI_9001411" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ohpi" } }, { - "@id": "https://orcid.org/0000-0003-4312-9552", + "@id": "https://orcid.org/0000-0002-6646-7274", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Daniel C. Berrios" + "@value": "Don Gilbert" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "daniel.c.berrios@nasa.gov" - } - }, - { - "@id": "http://edamontology.org/data_2662", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@value": "eugenes@iubio.bio.indiana.edu" } }, { - "@id": "https://bioregistry.io/registry/ogi", + "@id": "https://bioregistry.io/registry/modeldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n", + "http://purl.org/dc/terms/description": "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for genetic interval" + "@value": "ModelDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/OGI" + "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGI" + "@id": "https://registry.bio2kg.org/resource/modeldb" }, { - "@id": "http://aber-owl.net/ontology/OGI" + "@id": "http://edamontology.org/data_2669" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi" + "@id": "https://fairsharing.org/FAIRsharing.5rb3fk" }, { - "@id": "https://www.obofoundry.org/ontology/ogi" + "@id": "https://registry.identifiers.org/registry/modeldb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011330" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "life science" }, { - "@value": "ontology" + "@value": "computational biology" + }, + { + "@value": "neurobiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://code.google.com/archive/p/ontology-for-genetic-interval/" - }, - "https://bioregistry.io/schema/#0000005": "0000019", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ogi.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5379-5359" + "@id": "https://modeldb.science" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "OGI.owl" + "https://bioregistry.io/schema/#0000005": "45539", + "https://bioregistry.io/schema/#0000006": "https://modeldb.science/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://modeldb.science/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://modeldb.science/45539" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGI_", "https://bioregistry.io/schema/#0000029": { - "@value": "ogi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "modeldb" } }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype", + "@id": "http://aber-owl.net/ontology/MMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.psn0h2", + "@id": "https://fairsharing.org/FAIRsharing.17zapb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/clb", + "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/SOPHARM", + "@id": "https://bioregistry.io/registry/metnetdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Metabolic Network Exchange Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/metnetdb" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "protein" + }, + { + "@value": "rna" + }, + { + "@value": "interaction" + }, + { + "@value": "regulation" + }, + { + "@value": "pathway" + }, + { + "@value": "small molecule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.metnetdb.org/MetNet_db.htm" + }, + "https://bioregistry.io/schema/#0000005": "377369", + "https://bioregistry.io/schema/#0000006": "http://metnetonline.org/browse_pathway2.php?pthID=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://metnetonline.org/browse_pathway2.php?pthID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://metnetonline.org/browse_pathway2.php?pthID=377369" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metnetdb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT", + "@id": "https://www.obofoundry.org/ontology/mro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9d5f5r", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/tigrfam", + "@id": "https://registry.identifiers.org/registry/csd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.disease", + "@id": "https://registry.identifiers.org/registry/glyconavi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/CLO", + "@id": "https://bioregistry.io/metaregistry/biocontext/IMR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki", + "@id": "https://registry.identifiers.org/registry/ensembl.metazoa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp", + "@id": "http://aber-owl.net/ontology/APAONTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/fbdv", + "@id": "https://registry.bio2kg.org/resource/psi.mi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/intact", + "@id": "https://bioregistry.io/registry/pfr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data.", + "http://purl.org/dc/terms/description": "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IntAct protein interaction database" + "@value": "Proteoform Atlas" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0051" + "@id": "https://www.re3data.org/repository/r3d100012385" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT" - }, + "@id": "https://fairsharing.org/FAIRsharing.wqsxtg" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct" + "@value": "data management" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://repository.topdownproteomics.org/proteoforms" + }, + "https://bioregistry.io/schema/#0000005": "1001", + "https://bioregistry.io/schema/#0000006": "http://repository.topdownproteomics.org/proteoforms/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "TDR" + }, + "https://bioregistry.io/schema/#0000024": "http://repository.topdownproteomics.org/proteoforms/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://repository.topdownproteomics.org/proteoforms/1001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pfr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/polbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PolBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.d05nwx" + "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE" }, { - "@id": "https://registry.bio2kg.org/resource/intact" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase" }, { - "@id": "https://registry.identifiers.org/registry/intact" + "@id": "https://registry.identifiers.org/registry/polbase" }, { - "@id": "https://www.re3data.org/repository/r3d100010671" + "@id": "https://fairsharing.org/FAIRsharing.s9ztmd" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "biology" + "@value": "genetics" }, { - "@value": "interaction" + "@value": "biochemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/intact/" + "@id": "http://polbase.neb.com/" }, - "https://bioregistry.io/schema/#0000005": "EBI-2307691", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/interaction/$1", - "https://bioregistry.io/schema/#0000008": "^EBI\\-[0-9]+$", + "https://bioregistry.io/schema/#0000005": "19-T4", + "https://bioregistry.io/schema/#0000006": "https://polbase.neb.com/polymerases/$1#sequences", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8878-3972" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/interaction/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/polbase:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/intact/interaction/EBI-2307691" + "@id": "https://polbase.neb.com/polymerases/19-T4#sequences" }, "https://bioregistry.io/schema/#0000029": { - "@value": "intact" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ATOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@value": "polbase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/TRANS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012517", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://aber-owl.net/ontology/PATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/FaBiO", + "@id": "https://registry.bio2kg.org/resource/cgd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-6982-4660", + "@id": "https://orcid.org/0000-0003-2497-2210", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alex Bateman" + "@value": " Christos Louis" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "agb@ebi.ac.uk" + "@value": "louis@imbb.forth.gr" } }, { - "@id": "http://aber-owl.net/ontology/BFO", + "@id": "https://bartoc.org/en/node/572", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://registry.identifiers.org/registry/tair.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-2265-5572", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael Y Galperin" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cogs@ncbi.nlm.nih.gov" } }, { - "@id": "https://registry.identifiers.org/registry/linguist", + "@id": "https://fairsharing.org/FAIRsharing.9e9683", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT", + "@id": "https://bioregistry.io/registry/licebase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-8461-9745", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Marie-Angélique Laporte" + "@value": "LiceBase" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "m.a.laporte@cgiar.org" - } - }, - { - "@id": "https://registry.identifiers.org/registry/myco.tuber", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.c7w81a" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013547" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase" + }, + { + "@id": "https://registry.identifiers.org/registry/licebase" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://licebase.org" + }, + "https://bioregistry.io/schema/#0000005": "EMLSAT00000003403", + "https://bioregistry.io/schema/#0000006": "https://licebase.org/?q=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\-\\/]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4110-0748" + }, + "https://bioregistry.io/schema/#0000024": "https://licebase.org/?q=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://licebase.org/?q=EMLSAT00000003403" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "licebase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack", + "@id": "https://www.re3data.org/repository/r3d100012901", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://orcid.org/0000-0002-9654-0073", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bob Thacker" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "robert.thacker@stonybrook.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AEO", + "@id": "https://www.re3data.org/repository/r3d100010415", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/kegg.drug", + "@id": "https://bioregistry.io/registry/arachnoserver", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/kegg" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Drug" + "@value": "ArachnoServer" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG" + "@id": "https://www.uniprot.org/database/DB-0145" }, { - "@id": "https://registry.identifiers.org/registry/kegg.drug" + "@id": "http://edamontology.org/data_2578" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug" + "@id": "https://www.re3data.org/repository/r3d100012902" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://registry.identifiers.org/registry/arachnoserver" }, { - "@id": "http://edamontology.org/data_2609" + "@id": "https://fairsharing.org/FAIRsharing.c54ywe" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver" + }, + { + "@id": "https://registry.bio2kg.org/resource/arachnoserver" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/kegg/drug/" - }, - "https://bioregistry.io/schema/#0000005": "D00123", - "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^D\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "KEGG.DRUG" + "@value": "life science" }, { - "@value": "KEGG DRUG" + "@value": "protein" + }, + { + "@value": "drug" } ], - "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.arachnoserver.org/" + }, + "https://bioregistry.io/schema/#0000005": "AS000060", + "https://bioregistry.io/schema/#0000006": "http://www.arachnoserver.org/toxincard.html?id=$1", + "https://bioregistry.io/schema/#0000008": "^AS\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.arachnoserver.org/toxincard.html?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kegg.jp/entry/D00123" + "@id": "http://www.arachnoserver.org/toxincard.html?id=AS000060" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.drug" + "@value": "arachnoserver" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350", + "@id": "https://cropontology.org/ontology/CO_358", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/foodex2", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FoodEx2 is a comprehensive food classification and description system aimed at covering the need to describe food in data collections across different food safety domains.", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Food Classification and Description System" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.efsa.europa.eu/" - }, - "https://bioregistry.io/schema/#0000005": "A0TMC", - "https://bioregistry.io/schema/#0000006": "http://data.food.gov.uk/codes/foodtype/id/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nf42f1ec046d341cc9a6884792076b13b" - }, - "https://bioregistry.io/schema/#0000024": "http://data.food.gov.uk/codes/foodtype/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://data.food.gov.uk/codes/foodtype/id/A0TMC" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "foodex2" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "_:Nf42f1ec046d341cc9a6884792076b13b", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Food Safety Authority" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "datex@efsa.europa.eu" + "@id": "http://www.ontobee.org/ontology/EFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://aber-owl.net/ontology/CHEBI", + "@id": "https://registry.identifiers.org/registry/vegbank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.0pUMYW", + "@id": "https://fairsharing.org/FAIRsharing.c886cd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/TGMA", + "@id": "https://registry.identifiers.org/registry/compulyeast", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR", + "@id": "https://bioregistry.io/metaregistry/biocontext/DUO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/DOID", + "@id": "http://www.ontobee.org/ontology/MRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://aber-owl.net/ontology/CPT", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CAO", + "@id": "https://fairsharing.org/FAIRsharing.mgxgza", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/sao", + "@id": "https://bioregistry.io/registry/zfa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.", + "http://purl.org/dc/terms/description": "ZFA description.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/cerivs/zebrafish-anatomical-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Subcellular Anatomy Ontology" + "@value": "Zebrafish anatomy and development ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SAO" + "@id": "https://fairsharing.org/FAIRsharing.s3r6sk" }, { - "@id": "https://registry.bio2kg.org/resource/sao" + "@id": "http://www.ontobee.org/ontology/ZFA" }, { - "@id": "https://www.obofoundry.org/ontology/sao" + "@id": "https://bioportal.bioontology.org/ontologies/ZFA" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SAO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa" }, { - "@id": "http://aber-owl.net/ontology/SAO" + "@id": "https://www.obofoundry.org/ontology/zfa" + }, + { + "@id": "https://registry.bio2kg.org/resource/zfa" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA" + }, + { + "@id": "http://aber-owl.net/ontology/ZFA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "zebrafish" }, { "@value": "ontology" }, { - "@value": "owl" + "@value": "life science" }, { - "@value": "biochemistry" + "@value": "developmental biology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ccdb.ucsd.edu/CCDBWebSite/sao.html" + "@id": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" }, - "https://bioregistry.io/schema/#0000005": "5277619", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/sao$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0005926", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZFA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SAO/2/sao.owl" + "@id": "http://purl.obolibrary.org/obo/zfa.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/zp" }, - "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nf22035a46e7c43d2b632a2ab5a697c5e" + "@id": "https://orcid.org/0000-0002-2244-7917" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/sao", + "https://bioregistry.io/schema/#0000023": { + "@value": "ZFA_RETIRED" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZFA_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/sao5277619" + "@id": "http://purl.obolibrary.org/obo/ZFA_0005926" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sao" + "@value": "zfa" + } + }, + { + "@id": "http://edamontology.org/data_1141", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4c0b6b", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "_:Nf22035a46e7c43d2b632a2ab5a697c5e", + "@id": "https://orcid.org/0000-0003-4110-0748", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stephen Larson" + "@value": "Inge Jonassen" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "slarson@ncmir.ucsd.edu" + "@value": "Inge.Jonassen@uib.no" } }, { - "@id": "https://bioregistry.io/registry/ricenetdb.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RiceNetDB Reaction" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bis.zju.edu.cn/ricenetdb" - }, - "https://bioregistry.io/schema/#0000005": "OSR0818", - "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^OSR\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=OSR0818" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ricenetdb.reaction" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://www.ontobee.org/ontology/MP", + "@id": "http://www.wikidata.org/entity/P1928", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/bigg.compartment", + "@id": "https://bioregistry.io/registry/oid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.", + "http://purl.org/dc/terms/description": "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BiGG Compartment" + "@value": "ISO Object Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bigg.compartment" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment" + "@id": "https://registry.identifiers.org/registry/oid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bigg.ucsd.edu/compartments/" + "@id": "http://www.oid-info.com/introduction.htm" }, - "https://bioregistry.io/schema/#0000005": "c", - "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/compartments/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z]+$", + "https://bioregistry.io/schema/#0000005": "2.16.840", + "https://bioregistry.io/schema/#0000006": "http://oid-info.com/get/$1", + "https://bioregistry.io/schema/#0000008": "^[\\d.]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/compartments/", + "https://bioregistry.io/schema/#0000024": "http://oid-info.com/get/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bigg.ucsd.edu/compartments/c" + "@id": "http://oid-info.com/get/2.16.840" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bigg.compartment" + "@value": "oid" } }, { - "@id": "https://bioregistry.io/registry/tair.protein", + "@id": "https://fairsharing.org/FAIRsharing.3b36hk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11949", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/tigrfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/napp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/gxa.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept", + "http://purl.org/dc/terms/description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TAIR Protein" + "@value": "GXA Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein" - }, - { - "@id": "https://registry.identifiers.org/registry/tair.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE" }, { - "@id": "https://registry.bio2kg.org/resource/tair.protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN" + "@id": "https://registry.identifiers.org/registry/gxa.gene" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://arabidopsis.org/index.jsp" + "@id": "https://www.ebi.ac.uk/gxa/" }, - "https://bioregistry.io/schema/#0000005": "1009107926", - "https://bioregistry.io/schema/#0000006": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{10}$", + "https://bioregistry.io/schema/#0000005": "AT4G01080", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gxa/genes/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gxa/genes/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:1009107926" + "@id": "https://www.ebi.ac.uk/gxa/genes/AT4G01080" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tair.protein" + "@value": "gxa.gene" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION", + "@id": "https://fairsharing.org/FAIRsharing.hw3bh2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ghr", + "@id": "https://registry.bio2kg.org/resource/kegg.brite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/eropmoscow", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA).", + "http://purl.org/dc/terms/description": "EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genetics Home Reference" + "@value": "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/eropmoscow" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://medlineplus.gov/genetics/condition" + "@id": "http://erop.inbi.ras.ru" }, - "https://bioregistry.io/schema/#0000005": "saddan", - "https://bioregistry.io/schema/#0000006": "https://medlineplus.gov/genetics/condition/$1", + "https://bioregistry.io/schema/#0000005": "E00002", + "https://bioregistry.io/schema/#0000006": "http://erop.inbi.ras.ru/result2.php?PepName=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://medlineplus.gov/genetics/condition/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://erop.inbi.ras.ru/result2.php?PepName=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://medlineplus.gov/genetics/condition/saddan" + "@id": "http://erop.inbi.ras.ru/result2.php?PepName=E00002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ghr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/xenbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/yeastract", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/insdc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "eropmoscow" } }, { - "@id": "https://registry.bio2kg.org/resource/bgee", + "@id": "https://fairsharing.org/FAIRsharing.a8z6gz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/gwascentral.study", + "@id": "https://bioregistry.io/registry/mirex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study.", + "http://purl.org/dc/terms/description": "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GWAS Central Study" + "@value": "mirEX" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/hgvbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY" + "@id": "https://registry.identifiers.org/registry/mirex" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX" }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.study" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex" }, { - "@value": "gene" + "@id": "https://fairsharing.org/FAIRsharing.q3b39v" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gwascentral.org/studies" + "@id": "http://comgen.pl/mirex/?page=home" }, - "https://bioregistry.io/schema/#0000005": "HGVST1828", - "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/study/$1", - "https://bioregistry.io/schema/#0000008": "^HGVST\\d+$", + "https://bioregistry.io/schema/#0000005": "165a", + "https://bioregistry.io/schema/#0000006": "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes", + "https://bioregistry.io/schema/#0000008": "^\\d+(\\w+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/study/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mirex:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gwascentral.org/study/HGVST1828" + "@id": "http://comgen.pl/mirex1/?page=results/record&name=165a&exref=pp2a&limit=yes" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gwascentral.study" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ad3137", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "mirex" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD", + "@id": "https://registry.identifiers.org/registry/kegg.genome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/epso", + "@id": "https://bioregistry.io/registry/vmhmetabolite", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. ", + "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Epilepsy and Seizure Ontology" + "@value": "VMH metabolite" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ttprgy" - }, - { - "@id": "http://www.ontobee.org/ontology/EPSO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EPSO" + "@id": "https://registry.identifiers.org/registry/vmhmetabolite" }, { - "@id": "http://aber-owl.net/ontology/EPSO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "neurology" + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://prism.case.edu/prism/index.php/EpilepsyOntology" - }, - "https://bioregistry.io/schema/#0000005": "0000400", - "https://bioregistry.io/schema/#0000006": "http://www.case.edu/EpilepsyOntology.owl#$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/EPSO/3/epso.owl" + "@id": "https://www.vmh.life/" }, + "https://bioregistry.io/schema/#0000005": "h2o", + "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#metabolite/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9190-4256" - }, - "https://bioregistry.io/schema/#0000024": "http://www.case.edu/EpilepsyOntology.owl#", + "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#metabolite/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.case.edu/EpilepsyOntology.owl#0000400" + "@id": "https://www.vmh.life/#metabolite/h2o" }, "https://bioregistry.io/schema/#0000029": { - "@value": "epso" + "@value": "vmhmetabolite" } }, { - "@id": "http://www.ontobee.org/ontology/CTO", + "@id": "https://registry.identifiers.org/registry/tgd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/bao", + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.jr30xc", + "@id": "http://agroportal.lirmm.fr/ontologies/AGRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_347", + "@id": "https://registry.identifiers.org/registry/isfinder", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/gro", + "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/webelements", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes.", + "http://purl.org/dc/terms/description": "Browser for the periodic table of the elements", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Regulation Ontology" + "@value": "Web Elements" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/GRO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GRO" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "chemistry" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html" - }, - "https://bioregistry.io/schema/#0000005": "Lipid", - "https://bioregistry.io/schema/#0000006": "http://www.bootstrep.eu/ontology/GRO#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/GRO/5/gro.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N41714787cd9047729c702a0d53c298fe" + "@id": "https://www.webelements.com/" }, - "https://bioregistry.io/schema/#0000024": "http://www.bootstrep.eu/ontology/GRO#", + "https://bioregistry.io/schema/#0000005": "chromium", + "https://bioregistry.io/schema/#0000006": "https://www.webelements.com/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.webelements.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bootstrep.eu/ontology/GRO#Lipid" + "@id": "https://www.webelements.com/chromium" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gro" - } - }, - { - "@id": "_:N41714787cd9047729c702a0d53c298fe", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vivian Lee" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "vlee@ebi.ac.uk" + "@value": "webelements" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/schema/#0000008", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The pattern for identifiers in the given resource" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "https://bioregistry.io/registry/mmp.db", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MarDB includes all sequenced marine microbial genomes regardless of level of completeness.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has local unique identifier pattern" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@value": "MarDB" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://identifiers.org/idot/identifierPattern" + "@id": "https://registry.identifiers.org/registry/mmp.db" }, { - "@id": "http://www.wikidata.org/entity/P1793" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db" }, { - "@id": "http://vocabularies.bridgedb.org/ops#hasRegexPattern" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB" } - ] + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mmp.sfb.uit.no/databases/mardb/" + }, + "https://bioregistry.io/schema/#0000005": "MMP02954345.1", + "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/mardb/#/records/$1", + "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/mardb/#/records/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mmp.sfb.uit.no/databases/mardb/#/records/MMP02954345.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mmp.db" + } }, { - "@id": "https://bioregistry.io/registry/soybase", + "@id": "https://bioregistry.io/registry/mex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SoyBase is a repository for curated genetics, genomics and related data resources for soybean.", + "http://purl.org/dc/terms/description": "A public place to process, interpret and share GC/MS metabolomics datasets.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SoyBase" + "@value": "Metabolome Express" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.z4agsr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex" }, { - "@id": "https://registry.identifiers.org/registry/soybase" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEX" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE" - }, + "@id": "https://registry.identifiers.org/registry/mex" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.metabolome-express.org/" + }, + "https://bioregistry.io/schema/#0000005": "36", + "https://bioregistry.io/schema/#0000006": "https://www.metabolome-express.org/datasetview.php?datasetid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.metabolome-express.org/datasetview.php?datasetid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.metabolome-express.org/datasetview.php?datasetid=36" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mex" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000002", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A type for entries in the Bioregistry's metaregistry." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Registry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/3dmet", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/irefweb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7rngj0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/pdb-ccd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chemical Component Dictionary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010846" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD" }, { - "@id": "https://registry.bio2kg.org/resource/soy" + "@id": "https://registry.identifiers.org/registry/pdb-ccd" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase" + "@id": "https://registry.bio2kg.org/resource/ccd" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "comparative genomics" - }, - { - "@value": "spider" - }, - { - "@value": "life science" - }, - { - "@value": "phenotype" - }, - { - "@value": "agriculture" - }, - { - "@value": "obo" - }, - { - "@value": "development" + "@value": "classification" }, { - "@value": "plant breeding" + "@value": "chemical" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://soybase.org/" + "@id": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/" }, - "https://bioregistry.io/schema/#0000005": "BARC-013845-01256", - "https://bioregistry.io/schema/#0000006": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\-)?\\w+(\\-)?\\w+$", + "https://bioregistry.io/schema/#0000005": "AB0", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{1,3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2787-3955" + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/pdb.ligand" }, - "https://bioregistry.io/schema/#0000024": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=", + "https://bioregistry.io/schema/#0000023": { + "@value": "pdbechem" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=BARC-013845-01256" + "@id": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/AB0" }, "https://bioregistry.io/schema/#0000029": { - "@value": "soybase" + "@value": "pdb-ccd" } }, { - "@id": "https://bioregistry.io/registry/vido", + "@id": "http://www.ontobee.org/ontology/DOID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/lipidmaps", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/hagr.genage", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.", + "http://purl.org/dc/terms/description": "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/infectious-disease-ontology-extensions/ido-virus" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Virus Infectious Disease Ontology" + "@value": "The Ageing Gene Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/genage" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/VIDO" + "@value": "longevity" }, { - "@id": "http://aber-owl.net/ontology/VIDO" + "@value": "genes" }, { - "@id": "http://www.ontobee.org/ontology/VIDO" + "@value": "aging" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/infectious-disease-ontology-extensions/ido-virus" - }, - "https://bioregistry.io/schema/#0000005": "0001114", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VIDO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl" + "@id": "http://genomics.senescence.info/genes/" }, + "https://bioregistry.io/schema/#0000005": "0001", + "https://bioregistry.io/schema/#0000006": "http://genomics.senescence.info/genes/details.php?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1118-1738" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VIDO_", + "https://bioregistry.io/schema/#0000024": "http://genomics.senescence.info/genes/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VIDO_0001114" + "@id": "http://genomics.senescence.info/genes/details.php?id=0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vido" + "@value": "hagr.genage" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9vtwjs", + "@id": "https://fairsharing.org/FAIRsharing.ATwSZG", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ndex", + "@id": "https://bioregistry.io/registry/dideo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.", + "http://purl.org/dc/terms/description": "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ndexbio" + "@id": "https://github.com/DIDEO/DIDEO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Network Data Exchange" + "@value": "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100012690" + "@id": "http://aber-owl.net/ontology/DIDEO" }, { - "@id": "https://fairsharing.org/FAIRsharing.8nq9t6" + "@id": "http://www.ontobee.org/ontology/DIDEO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo" + }, + { + "@id": "https://www.obofoundry.org/ontology/dideo" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DIDEO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9y8f0n" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "microbiology" + "@value": "biochemistry" }, { - "@value": "epidemiology" + "@value": "ontology" }, { - "@value": "life science" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ndexbio.org" + "@id": "https://github.com/DIDEO/DIDEO" + }, + "https://bioregistry.io/schema/#0000005": "00000180", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DIDEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/dideo.owl" }, - "https://bioregistry.io/schema/#0000005": "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf", - "https://bioregistry.io/schema/#0000006": "https://www.ndexbio.org/viewer/networks/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8682-0568" + "@id": "https://orcid.org/0000-0003-1834-3856" }, - "https://bioregistry.io/schema/#0000024": "https://www.ndexbio.org/viewer/networks/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DIDEO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ndexbio.org/viewer/networks/aa78a43f-9c4d-11eb-9e72-0ac135e8bacf" + "@id": "http://purl.obolibrary.org/obo/DIDEO_00000180" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ndex" + "@value": "dideo" } }, { - "@id": "http://www.ontobee.org/ontology/MFOMD", + "@id": "https://registry.identifiers.org/registry/assembly", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/emapa", + "@id": "http://aber-owl.net/ontology/FB-SP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.identifiers.org/registry/darc", + "@id": "https://fairsharing.org/FAIRsharing.6L6MjA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/storedb.dataset", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/fairsharing.user", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Datasets inside StoreDB", + "http://purl.org/dc/terms/description": "A user of FAIRsharing", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/storedb" + "@id": "https://bioregistry.io/registry/fairsharing" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "STOREDB at University of Cambridge" + "@value": "FAIRsharing User" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.storedb.org/" + "@id": "https://fairsharing.org" }, - "https://bioregistry.io/schema/#0000005": "1251", - "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/?STOREDB:DATASET$1", + "https://bioregistry.io/schema/#0000005": "5112", + "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/users/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/?STOREDB:DATASET", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7702-4495" + }, + "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/users/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.storedb.org/?STOREDB:DATASET1251" + "@id": "https://fairsharing.org/users/5112" }, "https://bioregistry.io/schema/#0000029": { - "@value": "storedb.dataset" + "@value": "fairsharing.user" } }, { - "@id": "https://registry.bio2kg.org/resource/hamap", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/napp", + "@id": "https://www.obofoundry.org/ontology/aero", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/pass2", + "@id": "https://bioregistry.io/registry/co_323", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.", + "http://purl.org/dc/terms/description": "ICARDA - TDv5 - Sept 2018", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Alignment organised as Structural Superfamily" + "@value": "Barley ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323" }, { - "@id": "https://registry.bio2kg.org/resource/pass2" + "@id": "https://fairsharing.org/FAIRsharing.f69084" }, { - "@id": "https://registry.identifiers.org/registry/pass2" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_323" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2" + "@id": "https://cropontology.org/ontology/CO_323" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" - }, - { - "@value": "classification" + "@value": "agriculture" }, { - "@value": "genome" + "@value": "botany" }, { - "@value": "dna" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://caps.ncbs.res.in/pass2" + "@id": "https://cropontology.org/ontology/CO_323/Barley" }, - "https://bioregistry.io/schema/#0000005": "46977", - "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=", + "https://bioregistry.io/schema/#0000005": "0000252", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_323:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_323/Barley/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N5f89f946900e4eebb0589865b407f817" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_323:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=46977" + "@id": "https://cropontology.org/rdf/CO_323:0000252" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pass2" + "@value": "co_323" } }, { - "@id": "http://edamontology.org/data_1133", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "_:N5f89f946900e4eebb0589865b407f817", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ramesh Verna" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pso", + "@id": "https://registry.bio2kg.org/resource/string", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FIX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_1039", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/pocketome", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.", + "http://purl.org/dc/terms/description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Planteome/plant-stress-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Stress Ontology" + "@value": "Pocketome" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dyj433" - }, - { - "@id": "https://www.obofoundry.org/ontology/pso" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PSO" - }, - { - "@id": "http://www.ontobee.org/ontology/PSO" - }, - { - "@id": "http://aber-owl.net/ontology/PSO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "occupational medicine" + "@id": "https://registry.identifiers.org/registry/pocketome" }, { - "@value": "medical informatics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.tc6df8" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Planteome/plant-stress-ontology" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" }, - "https://bioregistry.io/schema/#0000005": "0000013", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pso.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pocketome.org/sfSearch.cgi?act=browseall" }, + "https://bioregistry.io/schema/#0000005": "1433C_TOBAC_1_252", + "https://bioregistry.io/schema/#0000006": "http://www.pocketome.org/files/$1.html", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/ro" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6379-8932" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PSO_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pocketome:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PSO_0000013" + "@id": "http://www.pocketome.org/files/1433C_TOBAC_1_252.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pso" + "@value": "pocketome" } }, { - "@id": "https://bioregistry.io/registry/beiresources", + "@id": "https://registry.identifiers.org/registry/gdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2619", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/alzgene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BEI Resources" + "@value": "Alzheimer Gene Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources" + "@id": "https://registry.bio2kg.org/resource/alzgene" }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "cell lines" + "@value": "gene" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.beiresources.org" + "@id": "http://www.alzgene.org" }, - "https://bioregistry.io/schema/#0000005": "MRA-253", - "https://bioregistry.io/schema/#0000006": "https://www.beiresources.org/Catalog/cellBanks/$1.aspx", + "https://bioregistry.io/schema/#0000005": "88", + "https://bioregistry.io/schema/#0000006": "http://www.alzgene.org/geneoverview.asp?geneid=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "BEI_Resources" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/beiresources:", + "https://bioregistry.io/schema/#0000024": "http://www.alzgene.org/geneoverview.asp?geneid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.beiresources.org/Catalog/cellBanks/MRA-253.aspx" + "@id": "http://www.alzgene.org/geneoverview.asp?geneid=88" }, "https://bioregistry.io/schema/#0000029": { - "@value": "beiresources" + "@value": "alzgene" } }, { - "@id": "https://bioregistry.io/registry/mi", + "@id": "https://bioregistry.io/registry/sh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.", + "http://purl.org/dc/terms/description": "A language for validating RDF graphs against a set of conditions", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HUPO-PSI/psi-mi-CV" + "@id": "https://github.com/w3c/data-shapes" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular Interactions Controlled Vocabulary" + "@value": "Shapes Constraint Language" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.f1449d" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/MI" - }, - { - "@id": "https://registry.bio2kg.org/resource/psi.mi" - }, - { - "@id": "https://www.obofoundry.org/ontology/mi" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI" - }, - { - "@id": "https://registry.identifiers.org/registry/mi" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8qzmtr" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi" - }, - { - "@id": "http://www.ontobee.org/ontology/MI" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MI" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "molecule" + "@value": "ontology" }, { - "@value": "obo" + "@value": "knowledge and information systems" }, { - "@value": "ontology" + "@value": "informatics" }, { - "@value": "interaction" + "@value": "ontology and terminology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/HUPO-PSI/psi-mi-CV" + "@id": "https://www.w3.org/TR/shacl/" }, - "https://bioregistry.io/schema/#0000005": "0058", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000005": "NodeShape", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/shacl#$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mi.owl" + "@id": "https://triplydb.com/w3c/sh/download.trig.gz" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5084-9000" + "@id": "https://orcid.org/0000-0002-3884-3420" }, "https://bioregistry.io/schema/#0000023": { - "@value": "PSI-MI" + "@value": "shacl" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MI_", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/shacl#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MI_0058" + "@id": "http://www.w3.org/ns/shacl#NodeShape" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mi" + "@value": "sh" } }, { - "@id": "https://orcid.org/0000-0001-9163-5180", + "@id": "https://www.obofoundry.org/ontology/cl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CSA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bitterdb.rec", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012311", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rfec93", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/OMIM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-2993-2085", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mike Cherry" + "@value": "Richard Boyce" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cherry@genome.stanford.edu" + "@value": "rdb20@pitt.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist", + "@id": "http://aber-owl.net/ontology/CDAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.uniprot.org/database/DB-0117", + "@id": "https://registry.bio2kg.org/resource/go", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/tcdb", + "@id": "http://aber-owl.net/ontology/CL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/atcc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally.", + "http://purl.org/dc/terms/description": "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Transporter Classification Database" + "@value": "American Type Culture Collection" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.p3bzqb" - }, - { - "@id": "https://registry.identifiers.org/registry/tcdb" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC" }, { - "@id": "http://www.wikidata.org/entity/P7260" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77" }, { - "@id": "http://edamontology.org/data_2756" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc" }, { - "@id": "https://registry.bio2kg.org/resource/tcdb" + "@id": "https://fairsharing.org/FAIRsharing.j0ezpm" }, { - "@id": "https://www.uniprot.org/database/DB-0135" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TC" + "@id": "https://registry.identifiers.org/registry/atcc" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "epidemiology" }, { - "@value": "life science" + "@value": "virology" }, { - "@value": "phylogenetics" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.lgcstandards-atcc.org" + }, + "https://bioregistry.io/schema/#0000005": "11303", + "https://bioregistry.io/schema/#0000006": "https://www.atcc.org/products/$1", + "https://bioregistry.io/schema/#0000008": "^([a-zA-Z]+-)?\\d+(\\.\\d)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "knowledge and information systems" + "@value": "ATCC" }, { - "@value": "structure" + "@value": "ATCC number" }, { - "@value": "computational biology" + "@value": "ATCC(in host)" }, { - "@value": "cell biology" + "@value": "ATCC(dna)" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.tcdb.org" - }, - "https://bioregistry.io/schema/#0000005": "5.A.1.1.1", - "https://bioregistry.io/schema/#0000006": "http://www.tcdb.org/search/result.php?tc=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5530-0017" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "TC" - }, - "https://bioregistry.io/schema/#0000024": "http://www.tcdb.org/search/result.php?tc=", + "https://bioregistry.io/schema/#0000024": "https://www.atcc.org/products/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.tcdb.org/search/result.php?tc=5.A.1.1.1" + "@id": "https://www.atcc.org/products/11303" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tcdb" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/aphidbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-4054-1827", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dawood B. Dudekula" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dawood@helix.nih.gov" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "atcc" } }, { - "@id": "https://registry.identifiers.org/registry/charprot", + "@id": "https://registry.identifiers.org/registry/spike.map", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/hbvar", + "@id": "https://registry.identifiers.org/registry/cbioportal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/mcc", + "@id": "https://bioregistry.io/registry/vmhgene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.", + "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Line Ontology [derivative]" + "@value": "VMH Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioportal.bioontology.org/ontologies/MCCL" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/vmhgene" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.molecularconnections.com" - }, - "https://bioregistry.io/schema/#0000005": "ThoracicArtery", - "https://bioregistry.io/schema/#0000006": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nd9b3195f68dc45c99c9355f67278f11b" + "@id": "https://www.vmh.life/" }, - "https://bioregistry.io/schema/#0000024": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#", + "https://bioregistry.io/schema/#0000005": "8639.1", + "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#gene/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+\\.[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#ThoracicArtery" + "@id": "https://www.vmh.life/#gene/8639.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mcc" + "@value": "vmhgene" } }, { - "@id": "_:Nd9b3195f68dc45c99c9355f67278f11b", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Usha Mahadevan" - }, + "@id": "https://orcid.org/0000-0002-9881-1017", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "William Hogan" + }, + { + "@value": "Bill Hogan" + } + ], "http://xmlns.com/foaf/0.1/mbox": { - "@value": "usha@molecularconnections.com" + "@value": "hoganwr@gmail.com" } }, { - "@id": "https://www.re3data.org/repository/r3d100010285", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/antweb", + "@id": "http://agroportal.lirmm.fr/ontologies/FALDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.bio2kg.org/resource/pibase", + "@id": "https://registry.bio2kg.org/resource/ird.segment", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC", + "@id": "https://bioportal.bioontology.org/ontologies/RADLEX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ecoportal" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.27rndz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/registry/fairsharing.organization", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An organization in FAIRsharing, including universities, labs, etc.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/fairsharing" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FAIRsharing Organization" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fairsharing.org" + }, + "https://bioregistry.io/schema/#0000005": "3851", + "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/organisations/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7702-4495" + }, + "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/organisations/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://fairsharing.org/organisations/3851" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fairsharing.organization" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dyj433", + "@id": "https://registry.identifiers.org/registry/ito", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/VIDO", + "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/FOBI", + "@id": "https://bartoc.org/en/node/454", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://orcid.org/0000-0001-9472-2589", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Karel Berka" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "karel.berka@upol.cz" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "http://www.ontobee.org/ontology/MPATH", + "@id": "https://registry.bio2kg.org/resource/smart", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/chemdb", + "@id": "https://orcid.org/0000-0002-7981-8504", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sheeba Samuel" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sheeba.samuel@uni-jena.de" + } + }, + { + "@id": "http://aber-owl.net/ontology/CLAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/hmdb", + "@id": "https://bioregistry.io/registry/clo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.", + "http://purl.org/dc/terms/description": "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/CLO-Ontology/CLO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Metabolome Database" + "@value": "Cell Line Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/hmdb" + "@id": "https://registry.identifiers.org/registry/clo" }, { - "@id": "https://registry.bio2kg.org/resource/hmdb" + "@id": "https://fairsharing.org/FAIRsharing.4dvtcz" }, { - "@id": "http://www.wikidata.org/entity/P2057" + "@id": "https://www.obofoundry.org/ontology/clo" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000408" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB" + "@id": "https://registry.bio2kg.org/resource/clo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLO" }, { - "@id": "https://fairsharing.org/FAIRsharing.sye5js" + "@id": "http://aber-owl.net/ontology/CLO" }, { - "@id": "http://edamontology.org/data_2622" + "@id": "http://www.wikidata.org/entity/P2158" }, { - "@id": "https://www.re3data.org/repository/r3d100011285" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "human" + "@id": "https://bioportal.bioontology.org/ontologies/CLO" }, { - "@value": "metabolomics" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO" }, { - "@value": "chemical" - }, + "@id": "http://www.ontobee.org/ontology/CLO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "molecular biology" + "@value": "ontology" }, { - "@value": "phenomics" + "@value": "life science" }, { - "@value": "proteomics" + "@value": "obo" }, { - "@value": "life science" - }, + "@value": "cell biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.clo-ontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0000091", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/clo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "biochemistry" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@value": "metabolite" + "@id": "https://bioregistry.io/registry/cl" }, { - "@value": "omics" + "@id": "https://bioregistry.io/registry/doid" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.hmdb.ca/" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mco" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2548-641X" }, - "https://bioregistry.io/schema/#0000005": "HMDB00001", - "https://bioregistry.io/schema/#0000006": "http://www.hmdb.ca/metabolites/$1", - "https://bioregistry.io/schema/#0000008": "^HMDB\\d+$", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "HMDB" + "@value": "CLO" }, - "https://bioregistry.io/schema/#0000024": "http://www.hmdb.ca/metabolites/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.hmdb.ca/metabolites/HMDB00001" + "@id": "http://purl.obolibrary.org/obo/CLO_0000091" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hmdb" + "@value": "clo" } }, { - "@id": "https://bioregistry.io/registry/ncbibook", + "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/noncode", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/VT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.0a2576", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cadsr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/aphidbase.transcript", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. ", + "http://purl.org/dc/terms/description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Bookshelf" + "@value": "AphidBase Transcript" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/aphidbase.transcript" + }, + { + "@id": "https://registry.bio2kg.org/resource/aphidbase" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/books" + "@id": "http://www.aphidbase.com/aphidbase" }, - "https://bioregistry.io/schema/#0000005": "NBK331", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/books/$1", - "https://bioregistry.io/schema/#0000008": "^NBK\\d+$", + "https://bioregistry.io/schema/#0000005": "ACYPI000159", + "https://bioregistry.io/schema/#0000006": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1", + "https://bioregistry.io/schema/#0000008": "^ACYPI\\d{6}(-RA)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/books/", + "https://bioregistry.io/schema/#0000024": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/books/NBK331" + "@id": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbibook" + "@value": "aphidbase.transcript" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMO", + "@id": "https://fairsharing.org/FAIRsharing.j0t0pe", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0002-8214-1696", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sheng-Da Hsu" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ken.sd.hsu@gmail.com" + "@id": "https://bioportal.bioontology.org/ontologies/MF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAO", + "@id": "https://bioregistry.io/registry/owlstar", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/linkml/owlstar" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontological Interpretations for Web Property Graphs" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://linkml.io/owlstar/" + }, + "https://bioregistry.io/schema/#0000005": "AllSomeInterpretation", + "https://bioregistry.io/schema/#0000006": "http://w3id.org/owlstar/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://w3id.org/owlstar/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://w3id.org/owlstar/AllSomeInterpretation" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "owlstar" } }, { - "@id": "https://registry.bio2kg.org/resource/snornalbmedb", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/aspgd.protein", + "@id": "https://registry.identifiers.org/registry/clinvar.record", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-8123-5351", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Adnan Malik" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "amalik@ebi.ac.uk" } }, { - "@id": "https://www.re3data.org/repository/r3d100010785", + "@id": "https://bioregistry.io/registry/ricegap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://orcid.org/0000-0003-3889-2879", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kristian Axelsen" + "@value": "Rice Genome Annotation Project" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kristian.axelsen@sib.swiss" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap" + }, + { + "@id": "https://registry.identifiers.org/registry/ricegap" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml" + }, + "https://bioregistry.io/schema/#0000005": "LOC_Os02g13300", + "https://bioregistry.io/schema/#0000006": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1", + "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=LOC_Os02g13300" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ricegap" } }, { - "@id": "https://fairsharing.org/FAIRsharing.a8z6gz", + "@id": "http://aber-owl.net/ontology/FOVT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED", + "@id": "https://registry.bio2kg.org/resource/ncbigene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo", + "@id": "https://bioregistry.io/metaregistry/biocontext/SWH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/PHENX", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/gsfa", + "@id": "https://bioregistry.io/registry/kyinno", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "General Standard for Food Additives Online Database" + "@value": "KYinno cell lines" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.fao.org/gsfaonline" + "@id": "https://www.kyinno.com/" }, - "https://bioregistry.io/schema/#0000005": "174", - "https://bioregistry.io/schema/#0000006": "http://www.fao.org/gsfaonline/additives/details.html?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "KC-0979", + "https://bioregistry.io/schema/#0000006": "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "FAO/WHO_standards" - }, - "https://bioregistry.io/schema/#0000024": "http://www.fao.org/gsfaonline/additives/details.html?id=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/kyinno:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.fao.org/gsfaonline/additives/details.html?id=174" + "@id": "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=KC-0979.pdf" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gsfa" - } - }, - { - "@id": "https://registry.identifiers.org/registry/panther.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "kyinno" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/TTO", + "@id": "https://bioregistry.io/metaregistry/biocontext/GO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/issn", + "@id": "http://edamontology.org/data_2292", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/fbbt", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://fairsharing.org/FAIRsharing.t19hpa", + "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/VARIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://orcid.org/0000-0003-3001-4908", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "URGI Contact" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "urgi-contact@versailles.inra.fr" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-6379-8932", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Laurel Cooper" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cooperl@oregonstate.edu" } }, { - "@id": "https://bioregistry.io/registry/rbo", + "@id": "https://bioregistry.io/registry/biocyc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.", + "http://purl.org/dc/terms/description": "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Radiobiology-Informatics-Consortium/RBO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Radiation Biology Ontology" + "@value": "BioCyc collection of metabolic pathway databases" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/RBO" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC" }, { - "@id": "http://aber-owl.net/ontology/RBO" + "@id": "https://registry.bio2kg.org/resource/biocyc" }, { - "@id": "http://www.ontobee.org/ontology/RBO" + "@id": "https://registry.identifiers.org/registry/biocyc" }, { - "@id": "https://www.obofoundry.org/ontology/rbo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.uniprot.org/database/DB-0005" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc" }, { - "@value": "ontology" + "@id": "http://edamontology.org/data_2104" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Radiobiology-Informatics-Consortium/RBO" - }, - "https://bioregistry.io/schema/#0000005": "00000105", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6,8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/rbo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/obi" - }, - { - "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/chmo" - }, - { - "@id": "https://bioregistry.io/registry/ro" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/uo" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/envo" + "@value": "sequence" }, { - "@id": "https://bioregistry.io/registry/pato" + "@value": "genome" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4312-9552" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://biocyc.org" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RBO_", + "https://bioregistry.io/schema/#0000005": "ECOLI:CYT-D-UBIOX-CPLX", + "https://bioregistry.io/schema/#0000006": "http://biocyc.org/getid?id=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://biocyc.org/getid?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/RBO_00000105" + "@id": "http://biocyc.org/getid?id=ECOLI:CYT-D-UBIOX-CPLX" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rbo" + "@value": "biocyc" } }, { - "@id": "https://bioregistry.io/registry/gdsc", + "@id": "https://bioportal.bioontology.org/ontologies/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ega.study", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.", + "http://purl.org/dc/terms/description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomics of Drug Sensitivity in Cancer" + "@value": "European Genome-phenome Archive Study" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gdsc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC" + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc" + "@id": "https://registry.identifiers.org/registry/ega.study" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cancerrxgene.org" + "@id": "https://www.ebi.ac.uk/ega/studies" }, - "https://bioregistry.io/schema/#0000005": "1242", - "https://bioregistry.io/schema/#0000006": "https://www.cancerrxgene.org/translation/Drug/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "EGAS00000000001", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ega/studies/$1", + "https://bioregistry.io/schema/#0000008": "^EGAS\\d{11}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.cancerrxgene.org/translation/Drug/", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ega/studies/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cancerrxgene.org/translation/Drug/1242" + "@id": "https://www.ebi.ac.uk/ega/studies/EGAS00000000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gdsc" + "@value": "ega.study" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMO", + "@id": "https://registry.identifiers.org/registry/hpa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ntyq70", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2292", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary", + "@id": "https://bioportal.bioontology.org/ontologies/AMPHX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PROPREO", + "@id": "http://edamontology.org/data_2356", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://orcid.org/0000-0002-6680-578X", + "@id": "https://orcid.org/0000-0003-1613-5981", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jeffrey A. Detras" + "@value": "Heather Piwowar" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "j.detras@cgiar.org" + "@value": "hpiwowar@gmail.com" } }, { - "@id": "https://registry.identifiers.org/registry/pirsf", + "@id": "https://bioportal.bioontology.org/ontologies/ENVO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cstr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/alzgene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data.", + "@id": "https://www.re3data.org/repository/r3d100010921", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alzheimer Gene Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/alzgene" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.alzgene.org" - }, - "https://bioregistry.io/schema/#0000005": "88", - "https://bioregistry.io/schema/#0000006": "http://www.alzgene.org/geneoverview.asp?geneid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.alzgene.org/geneoverview.asp?geneid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.alzgene.org/geneoverview.asp?geneid=88" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "alzgene" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.wikidata.org/entity/P2115", + "@id": "http://edamontology.org/data_1138", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/pigqtldb", + "@id": "https://bioregistry.io/metaregistry/biocontext/AAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/ypo", + "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_2660", + "@id": "https://fairsharing.org/FAIRsharing.kj336a", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/itmctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)", + "@id": "https://www.re3data.org/repository/r3d100013331", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Traditional Medicine Clinical Trial Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://itmctr.ccebtcm.org.cn" - }, - "https://bioregistry.io/schema/#0000005": "ITMCTR2023000002", - "https://bioregistry.io/schema/#0000008": "^ITMCTR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "itmctr" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/treebase", + "@id": "https://bioregistry.io/registry/co_322", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.", + "http://purl.org/dc/terms/description": "Maize Trait Dictionary in template 5 - CIMMYT- September 2016", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/TreeBASE/treebase/issues" + "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TreeBASE" + "@value": "Maize ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.zcn4w4" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE" - }, - { - "@id": "https://registry.bio2kg.org/resource/treebase" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322" }, { - "@id": "https://www.re3data.org/repository/r3d100010170" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_322" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase" + "@id": "https://fairsharing.org/FAIRsharing.eeyne8" }, { - "@id": "https://registry.identifiers.org/registry/treebase" + "@id": "https://cropontology.org/ontology/CO_322" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "classification" + "@value": "agriculture" }, { - "@value": "phylogenomics" + "@value": "botany" }, { - "@value": "phylogenetics" + "@value": "ontology" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://treebase.org/" + "@id": "https://cropontology.org/ontology/CO_322/Maize" + }, + "https://bioregistry.io/schema/#0000005": "0000773", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_322:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_322/Maize/owl" }, - "https://bioregistry.io/schema/#0000005": "TB2:S1000", - "https://bioregistry.io/schema/#0000006": "http://purl.org/phylo/treebase/phylows/study/$1?format=html", - "https://bioregistry.io/schema/#0000008": "^TB[1,2]?:[A-Z][a-z]?\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9254-7318" + "@id": "_:N216cbdecc2d7444289dbaf0f948d7bb1" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/treebase:", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_322:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/phylo/treebase/phylows/study/TB2:S1000?format=html" + "@id": "https://cropontology.org/rdf/CO_322:0000773" }, "https://bioregistry.io/schema/#0000029": { - "@value": "treebase" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bartoc.org/en/node/2054", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@value": "co_322" } }, { - "@id": "https://orcid.org/0000-0002-7356-1779", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/babelon" - }, - { - "@id": "https://bioregistry.io/registry/sssom" - }, - { - "@id": "https://bioregistry.io/registry/pav" - } - ], + "@id": "_:N216cbdecc2d7444289dbaf0f948d7bb1", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nicolas Matentzoglu" + "@value": "Crop Ontology Helpdesk" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nicolas.matentzoglu@gmail.com" + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/registry/refseq", + "@id": "https://bioregistry.io/registry/xlmod", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HUPO-PSI/xlmod-CV" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Reference Sequence Collection" + "@value": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010285" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4jg0qw" - }, - { - "@id": "https://registry.bio2kg.org/resource/refseq" + "@id": "https://bioportal.bioontology.org/ontologies/XLMOD" }, { - "@id": "https://registry.identifiers.org/registry/refseq" + "@id": "http://www.ontobee.org/ontology/XLMOD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod" }, { - "@id": "https://www.uniprot.org/database/DB-0117" + "@id": "https://www.obofoundry.org/ontology/xlmod" }, { - "@id": "http://edamontology.org/data_1098" + "@id": "http://aber-owl.net/ontology/XLMOD" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280" + "@id": "https://fairsharing.org/FAIRsharing.6ccbe6" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "rna" - }, - { - "@value": "life science" + "@value": "ontology" }, { - "@value": "genetics" + "@value": "metabolomics" }, { - "@value": "computational biology" + "@value": "chemical biology" }, { - "@value": "dna" + "@value": "obo" }, { - "@value": "protein" + "@value": "omics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/projects/RefSeq/" + "@id": "http://www.psidev.info/groups/controlled-vocabularies" }, - "https://bioregistry.io/schema/#0000005": "NP_012345", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1", - "https://bioregistry.io/schema/#0000008": "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/ncbiprotein" + "https://bioregistry.io/schema/#0000005": "00050", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XLMOD_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/xlmod.owl" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "REFSEQ_PROT" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4978-0864" }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/protein/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XLMOD_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/protein/NP_012345" + "@id": "http://purl.obolibrary.org/obo/XLMOD_00050" }, "https://bioregistry.io/schema/#0000029": { - "@value": "refseq" + "@value": "xlmod" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC", + "@id": "https://registry.identifiers.org/registry/cdpd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/ceph", + "@id": "https://orcid.org/0000-0003-0169-8159", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Núria Queralt Rosinach" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "n.queralt_rosinach@lumc.nl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ncbitaxon", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/tokue", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "@id": "https://registry.identifiers.org/registry/glytoucan", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TOKU-E Cell-culture Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cell-lines.toku-e.com" - }, - "https://bioregistry.io/schema/#0000006": "http://cell-lines.toku-e.com/Cell-Lines_$1.html", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/tokue:", - "https://bioregistry.io/schema/#0000029": { - "@value": "tokue" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/ADO", + "@id": "http://www.wikidata.org/entity/P2410", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/igsn", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID", + "@id": "https://registry.bio2kg.org/resource/wbbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.x989d5", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ppo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pass2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/pdro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.", + "http://purl.org/dc/terms/description": "An ontology to describe entities related to prescription of drugs", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PlantPhenoOntology/PPO" + "@id": "https://github.com/OpenLHS/PDRO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Phenology Ontology" + "@value": "The Prescription of Drugs Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PPO" - }, - { - "@id": "http://www.ontobee.org/ontology/PPO" + "@id": "http://www.ontobee.org/ontology/PDRO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PPO" + "@id": "https://fairsharing.org/FAIRsharing.9te3ev" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo" + "@id": "http://aber-owl.net/ontology/PDRO" }, { - "@id": "http://aber-owl.net/ontology/PPO" + "@id": "https://www.obofoundry.org/ontology/pdro" }, { - "@id": "https://fairsharing.org/FAIRsharing.hakg7c" + "@id": "https://bioportal.bioontology.org/ontologies/PDRO" }, { - "@id": "https://www.obofoundry.org/ontology/ppo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PPO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "primary health care" }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/PlantPhenoOntology/PPO" + "@id": "https://github.com/OpenLHS/PDRO" }, - "https://bioregistry.io/schema/#0000005": "0002058", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PPO_$1", + "https://bioregistry.io/schema/#0000005": "0010039", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PDRO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ppo.owl" + "@id": "http://purl.obolibrary.org/obo/pdro.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8815-0078" + "@id": "https://orcid.org/0000-0002-3336-2476" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PPO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PDRO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PPO_0002058" + "@id": "http://purl.obolibrary.org/obo/PDRO_0010039" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ppo" - } - }, - { - "@id": "https://orcid.org/0000-0002-2404-1582", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clement Jonquet" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "clement.jonquet@inrae.fr" + "@value": "pdro" } }, { - "@id": "http://aber-owl.net/ontology/PCO", + "@id": "https://bioportal.bioontology.org/ontologies/DCAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/po", + "@id": "https://bioregistry.io/registry/htn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.", + "http://purl.org/dc/terms/description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Planteome/plant-ontology" + "@id": "https://github.com/aellenhicks/htn_owl" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Ontology" + "@value": "Hypertension Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn" }, { - "@id": "https://registry.identifiers.org/registry/po" + "@id": "https://www.obofoundry.org/ontology/htn" }, { - "@id": "https://registry.bio2kg.org/resource/po" + "@id": "http://aber-owl.net/ontology/HTN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po" + "@id": "https://bioportal.bioontology.org/ontologies/HTN" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PO" + "@id": "http://www.ontobee.org/ontology/HTN" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" }, { - "@id": "http://www.ontobee.org/ontology/PO" + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/aellenhicks/htn_owl" + }, + "https://bioregistry.io/schema/#0000005": "00000014", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HTN_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/htn.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1795-5570" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HTN_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/HTN_00000014" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "htn" + } + }, + { + "@id": "https://bioregistry.io/registry/pco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/PopulationAndCommunityOntology/pco" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Population and Community Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://agroportal.lirmm.fr/ontologies/PCO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PO" + "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PO" + "@id": "http://www.ontobee.org/ontology/PCO" }, { - "@id": "https://www.obofoundry.org/ontology/po" + "@id": "https://bioregistry.io/metaregistry/biocontext/PCO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/po" + "@id": "https://bioportal.bioontology.org/ontologies/PCO" }, { - "@id": "http://edamontology.org/data_1180" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco" }, { - "@id": "https://fairsharing.org/FAIRsharing.3ngg40" + "@id": "https://fairsharing.org/FAIRsharing.vq28qp" }, { - "@id": "http://aber-owl.net/ontology/PO" + "@id": "http://aber-owl.net/ontology/PCO" + }, + { + "@id": "https://www.obofoundry.org/ontology/pco" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "plant anatomy" + "@value": "biodiversity" }, { - "@value": "life science" + "@value": "obo" }, { - "@value": "structure" + "@value": "social and behavioural science" }, { - "@value": "classification" + "@value": "community care" }, { - "@value": "obo" + "@value": "ecology" }, { - "@value": "ontology" + "@value": "population genetics" }, { - "@value": "botany" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://browser.planteome.org/amigo" + "@id": "https://github.com/PopulationAndCommunityOntology/pco" }, - "https://bioregistry.io/schema/#0000005": "0009089", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0000021", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PCO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/po.owl" + "@id": "http://purl.obolibrary.org/obo/pco.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/registry/genepio" + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/caro" }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + } + ], + "https://bioregistry.io/schema/#0000018": [ { "@id": "https://bioregistry.io/registry/envo" }, @@ -20626,1342 +23945,1017 @@ } ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1005-8383" + "@id": "https://orcid.org/0000-0001-8815-0078" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PCO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PO_0009089" + "@id": "http://purl.obolibrary.org/obo/PCO_0000021" }, "https://bioregistry.io/schema/#0000029": { - "@value": "po" + "@value": "pco" } }, { - "@id": "https://bioregistry.io/registry/pdb-ccd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.", + "@id": "http://www.ontobee.org/ontology/EMAPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/dpo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for the description of Drosophila melanogaster phenotypes.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/fbcv" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/FlyBase/drosophila-phenotype-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Component Dictionary" + "@value": "Drosophila Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/pdb-ccd" + "@id": "http://www.ontobee.org/ontology/DPO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD" + "@id": "https://bioportal.bioontology.org/ontologies/DPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd" + "@id": "http://aber-owl.net/ontology/DPO" }, { - "@id": "https://registry.bio2kg.org/resource/ccd" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo" + }, + { + "@id": "https://www.obofoundry.org/ontology/dpo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "classification" + "@value": "obo" }, { - "@value": "chemical" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/" + "@id": "http://purl.obolibrary.org/obo/fbcv" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBcv_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/dpo.owl" }, - "https://bioregistry.io/schema/#0000005": "AB0", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{1,3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/pdb.ligand" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1373-1705" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "pdbechem" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBcv_", + "https://bioregistry.io/schema/#0000029": { + "@value": "dpo" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/sgn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/cellrepo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Version Control Repository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/cellrepo" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cellrepo.ico2s.org/" + }, + "https://bioregistry.io/schema/#0000005": "82", + "https://bioregistry.io/schema/#0000006": "https://cellrepo.ico2s.org/repositories/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cellrepo.ico2s.org/repositories/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/AB0" + "@id": "https://cellrepo.ico2s.org/repositories/82" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pdb-ccd" + "@value": "cellrepo" } }, { - "@id": "https://bioregistry.io/registry/dbgap", + "@id": "https://bioregistry.io/registry/seed.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.", + "http://purl.org/dc/terms/description": "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Genotypes and Phenotypes" + "@value": "SEED Reactions" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP" - }, - { - "@id": "https://registry.identifiers.org/registry/dbgap" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.88v2k0" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/seed.reaction" }, { - "@value": "genetics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction" }, { - "@value": "epigenetics" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/projects/gap" + "@id": "http://modelseed.org/biochem/reactions/" }, - "https://bioregistry.io/schema/#0000005": "phs000768.v2.p1", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1", - "https://bioregistry.io/schema/#0000008": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", + "https://bioregistry.io/schema/#0000005": "rxn00001", + "https://bioregistry.io/schema/#0000006": "http://modelseed.org/biochem/reactions/$1", + "https://bioregistry.io/schema/#0000008": "^rxn\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=", + "https://bioregistry.io/schema/#0000024": "http://modelseed.org/biochem/reactions/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000768.v2.p1" + "@id": "http://modelseed.org/biochem/reactions/rxn00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dbgap" - } - }, - { - "@id": "https://registry.identifiers.org/registry/maxo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "seed.reaction" } }, { - "@id": "https://bioregistry.io/registry/panther.pathway", + "@id": "https://bioregistry.io/registry/uniref", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/panther" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PANTHER Pathway" + "@value": "UniRef" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_1161" - }, - { - "@id": "https://registry.identifiers.org/registry/panther.pathway" + "@id": "https://www.re3data.org/repository/r3d100011518" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway" + "@id": "http://edamontology.org/data_2346" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY" + "@id": "https://registry.identifiers.org/registry/uniref" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pantherdb.org/" + "@id": "https://www.uniprot.org/" }, - "https://bioregistry.io/schema/#0000005": "P00024", - "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1", - "https://bioregistry.io/schema/#0000008": "^P\\d{5}$", + "https://bioregistry.io/schema/#0000005": "UniRef90_P00750", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/uniref/$1", + "https://bioregistry.io/schema/#0000008": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=", + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/uniref/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=P00024" + "@id": "https://www.uniprot.org/uniref/UniRef90_P00750" }, "https://bioregistry.io/schema/#0000029": { - "@value": "panther.pathway" - } - }, - { - "@id": "http://aber-owl.net/ontology/OBCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PROCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xhwrnr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "uniref" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_327", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/ensembl.metazoa", + "@id": "https://bioregistry.io/registry/fma", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.", + "http://purl.org/dc/terms/description": "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://bitbucket.org/uwsig/fma" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." + "@value": "Foundational Model of Anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA" + "@id": "https://bartoc.org/en/node/571" }, { - "@id": "https://fairsharing.org/FAIRsharing.c23cqq" + "@id": "https://registry.bio2kg.org/resource/fma" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.metazoa" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa" + "@id": "https://fairsharing.org/FAIRsharing.x56jsy" }, { - "@id": "https://www.uniprot.org/database/DB-0149" + "@id": "http://aber-owl.net/ontology/FMA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma" }, { - "@id": "https://www.re3data.org/repository/r3d100011198" + "@id": "http://www.ontobee.org/ontology/FMA" + }, + { + "@id": "http://www.wikidata.org/entity/P1402" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FMA" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma" + }, + { + "@id": "https://www.obofoundry.org/ontology/fma" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FMA" + }, + { + "@id": "https://registry.identifiers.org/registry/fma" + }, + { + "@id": "http://edamontology.org/data_1182" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "radiology" }, { - "@value": "comparative genomics" + "@value": "human" }, { - "@value": "genome" + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "owl" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metazoa.ensembl.org/" + "@id": "http://si.washington.edu/projects/fma" }, - "https://bioregistry.io/schema/#0000005": "FBtr0084214", - "https://bioregistry.io/schema/#0000006": "https://metazoa.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://metazoa.ensembl.org/id/", + "https://bioregistry.io/schema/#0000005": "63189", + "https://bioregistry.io/schema/#0000006": "http://purl.org/sig/ont/fma/fma$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fma.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N19a416df860e42448f691692a038666c" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "FMA_RETIRED" + }, + { + "@value": "FMAID" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.org/sig/ont/fma/fma", "https://bioregistry.io/schema/#0000027": { - "@id": "https://metazoa.ensembl.org/id/FBtr0084214" + "@id": "http://purl.org/sig/ont/fma/fma63189" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl.metazoa" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JWS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.anpa6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wp0134", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ny3z9j", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ped.ensemble", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/MCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "fma" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2y1KMt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "_:N19a416df860e42448f691692a038666c", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Onard Mejino" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mejino@u.washington.edu" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CDAO", + "@id": "http://www.wikidata.org/entity/P3890", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OA", + "@id": "https://bioportal.bioontology.org/ontologies/NBO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/mo", + "@id": "https://bioregistry.io/registry/interlex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data.", + "http://purl.org/dc/terms/description": "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Microarray experimental conditions" + "@value": "InterLex" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/MO" - }, - { - "@id": "https://registry.identifiers.org/registry/mo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MO" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo" + "@id": "https://fairsharing.org/FAIRsharing.67sssf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MO" + "@id": "http://www.wikidata.org/entity/P696" }, { - "@id": "https://www.obofoundry.org/ontology/mo" + "@id": "https://registry.identifiers.org/registry/ilx" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "biomedical science" }, { - "@value": "ontology" + "@value": "anatomy" + }, + { + "@value": "neurobiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mged.sourceforge.net/ontologies/MGEDontology.php" - }, - "https://bioregistry.io/schema/#0000005": "ArrayGroup", - "https://bioregistry.io/schema/#0000006": "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mo.owl" + "@id": "https://www.fdilab.org" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5714-991X" + "https://bioregistry.io/schema/#0000005": "0101963", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/scicrunch/interlex/view/ilx_$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "ILX" }, - "https://bioregistry.io/schema/#0000024": "https://mged.sourceforge.net/ontologies/MGEDontology.php#", + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/scicrunch/interlex/view/ilx_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mged.sourceforge.net/ontologies/MGEDontology.php#ArrayGroup" + "@id": "https://scicrunch.org/scicrunch/interlex/view/ilx_0101963" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mo" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FB-BT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "interlex" } }, { - "@id": "https://bioregistry.io/registry/evm", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://registry.identifiers.org/registry/emdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eVOC mouse development stage" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "evm" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/sgn", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3", + "@id": "https://fairsharing.org/FAIRsharing.2ck3st", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/LEPAO", + "@id": "https://bioportal.bioontology.org/ontologies/CARO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/oarcs", + "@id": "https://bioregistry.io/registry/mfmo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OArCS is an ontology describing the Arthropod ciruclatory system.", + "http://purl.org/dc/terms/description": "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/aszool/oarcs" + "@id": "https://github.com/RDruzinsky/feedontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Arthropod Circulatory Systems" + "@value": "Mammalian Feeding Muscle Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OARCS" + "@id": "https://www.obofoundry.org/ontology/mfmo" }, { - "@id": "http://www.ontobee.org/ontology/OARCS" + "@id": "http://www.ontobee.org/ontology/MFMO" }, { - "@id": "http://aber-owl.net/ontology/OARCS" + "@id": "http://aber-owl.net/ontology/MFMO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs" + "@id": "https://bioportal.bioontology.org/ontologies/MFMO" }, { - "@id": "https://www.obofoundry.org/ontology/oarcs" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO" }, { - "@id": "https://fairsharing.org/FAIRsharing.yqn857" + "@id": "https://fairsharing.org/FAIRsharing.669cnk" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "ontology" }, { - "@value": "angiology" + "@value": "anatomy" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/aszool/oarcs" + "@id": "https://github.com/rdruzinsky/feedontology" }, - "https://bioregistry.io/schema/#0000005": "0000029", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OARCS_$1", + "https://bioregistry.io/schema/#0000005": "0000208", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFMO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/oarcs.owl" + "@id": "http://purl.obolibrary.org/obo/mfmo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/uberon" }, - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5640-5491" + "@id": "https://orcid.org/0000-0002-1572-1316" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OARCS_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFMO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OARCS_0000029" + "@id": "http://purl.obolibrary.org/obo/MFMO_0000208" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oarcs" + "@value": "mfmo" } }, { - "@id": "https://bioregistry.io/registry/pandit", + "@id": "https://bioregistry.io/registry/mro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains.", + "http://purl.org/dc/terms/description": "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/IEDB/MRO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein and Associated NucleotideDomains with Inferred Trees" + "@value": "MHC Restriction Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/pandit" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011232" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "protein" + "@id": "http://aber-owl.net/ontology/MRO" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/goldman-srv/pandit" - }, - "https://bioregistry.io/schema/#0000005": "PF00004", - "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/pfam" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=PF00004" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pandit" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.etp533", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/lipro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0147", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/dpo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for the description of Drosophila melanogaster phenotypes.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://www.ontobee.org/ontology/MRO" }, { - "@id": "https://bioregistry.io/registry/fbcv" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FlyBase/drosophila-phenotype-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drosophila Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/DPO" + "@id": "https://fairsharing.org/FAIRsharing.k893xa" }, { - "@id": "https://www.obofoundry.org/ontology/dpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/MRO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo" + "@id": "https://www.obofoundry.org/ontology/mro" }, { - "@id": "http://aber-owl.net/ontology/DPO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro" }, { - "@id": "http://www.ontobee.org/ontology/DPO" + "@id": "https://bioportal.bioontology.org/ontologies/MRO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "immunology" }, { "@value": "ontology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/fbcv" + "@id": "https://github.com/IEDB/MRO" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBcv_$1", + "https://bioregistry.io/schema/#0000005": "0000634", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/dpo.owl" + "@id": "http://purl.obolibrary.org/obo/mro.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1373-1705" + "@id": "https://orcid.org/0000-0002-8457-6693" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MRO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MRO_0000634" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBcv_", "https://bioregistry.io/schema/#0000029": { - "@value": "dpo" + "@value": "mro" } }, { - "@id": "https://bioregistry.io/registry/oryzabase.reference", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryzabase Reference" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference" - }, - { - "@id": "https://registry.identifiers.org/registry/oryzabase.reference" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" - }, - "https://bioregistry.io/schema/#0000005": "42840", - "https://bioregistry.io/schema/#0000006": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/42840" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oryzabase.reference" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/peroxibase", + "@id": "https://bioregistry.io/registry/atcvet", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.", + "http://purl.org/dc/terms/description": "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Peroxibase" + "@value": "Anatomical Therapeutic Chemical Vetinary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE" - }, - { - "@id": "https://www.uniprot.org/database/DB-0072" - }, - { - "@id": "https://registry.identifiers.org/registry/peroxibase" - }, - { - "@id": "https://registry.bio2kg.org/resource/peroxibase" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z1czxj" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "enzyme" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet" }, { - "@value": "regulation" + "@id": "https://registry.identifiers.org/registry/atcvet" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://peroxibase.toulouse.inra.fr/" + "@id": "http://www.whocc.no/atcvet/atcvet_index/" }, - "https://bioregistry.io/schema/#0000005": "5282", - "https://bioregistry.io/schema/#0000006": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "QJ51RV02", + "https://bioregistry.io/schema/#0000006": "http://www.whocc.no/atcvet/atcvet_index/?code=$1", + "https://bioregistry.io/schema/#0000008": "^Q[A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1637-404" - }, - "https://bioregistry.io/schema/#0000024": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=", + "https://bioregistry.io/schema/#0000024": "http://www.whocc.no/atcvet/atcvet_index/?code=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=5282" + "@id": "http://www.whocc.no/atcvet/atcvet_index/?code=QJ51RV02" }, "https://bioregistry.io/schema/#0000029": { - "@value": "peroxibase" + "@value": "atcvet" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://orcid.org/0000-0002-3458-4839", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Trish Whetzel" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "plwhetzel@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MO", + "@id": "http://www.ontobee.org/ontology/TXPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.tc6df8", + "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/tarbase", + "@id": "https://bioregistry.io/registry/eol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.", + "http://purl.org/dc/terms/description": "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TarBase" + "@value": "Environment Ontology for Livestock" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase" + "@id": "https://fairsharing.org/FAIRsharing.w7bw2y" }, { - "@id": "https://registry.identifiers.org/registry/tarbase" + "@id": "http://aber-owl.net/ontology/EOL" }, { - "@id": "https://fairsharing.org/FAIRsharing.a0k4cd" + "@id": "https://www.re3data.org/repository/r3d100011663" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EOL" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/EOL" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "agriculture" }, { - "@value": "life science" + "@value": "animal husbandry" + }, + { + "@value": "ontology" + }, + { + "@value": "environmental science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index" + "@id": "http://www.atol-ontology.com" + }, + "https://bioregistry.io/schema/#0000005": "0001927", + "https://bioregistry.io/schema/#0000006": "http://purl.org/obo/owlEOL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=eol.owl" }, - "https://bioregistry.io/schema/#0000005": "hsa-let-7a-2-3p", - "https://bioregistry.io/schema/#0000006": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8310-5195" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/obo/owlEOL_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=hsa-let-7a-2-3p" + "@id": "http://purl.org/obo/owlEOL_0001927" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tarbase" + "@value": "eol" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330", + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/nlx.sub", + "@id": "https://bioregistry.io/registry/deo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO).", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://github.com/sparontologies/deo" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Subcellular Entities" + "@value": "Discourse Elements Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular" + "@id": "https://fairsharing.org/FAIRsharing.39fd58" }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "cellular components" + "@value": "subject agnostic" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "http://www.sparontologies.net/ontologies/deo" }, - "https://bioregistry.io/schema/#0000005": "090803", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "Reference", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/deo/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0003-0530-4305" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "NLXSUB" - }, - { - "@value": "nif_subcellular" - } - ], - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_", + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/deo/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_090803" + "@id": "http://purl.org/spar/deo/Reference" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.sub" + "@value": "deo" } }, { - "@id": "https://www.obofoundry.org/ontology/ipr", + "@id": "https://semanticscience.org/resource/CHEMINF_000447", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://registry.identifiers.org/registry/ligandbook", + "@id": "https://registry.identifiers.org/registry/bionumbers", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho", + "@id": "https://registry.identifiers.org/registry/pubmed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_1176", + "@id": "https://bioregistry.io/metaregistry/biocontext/HPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase", + "@id": "https://cropontology.org/ontology/CO_366", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project", + "@id": "https://fairsharing.org/FAIRsharing.wsfk5z", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN", + "@id": "https://www.re3data.org/repository/r3d100013715", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/cdao", + "@id": "https://www.obofoundry.org/ontology/psdo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/umbbd.rule", + "@id": "http://aber-owl.net/ontology/ONTONEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/wikidata", + "@id": "https://bioregistry.io/registry/anzctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": " The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0003-2715-335X", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Torsten Schwede" + "@value": "Australian New Zealand Clinical Trials Registry" }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "help-swissmodel@unibas.ch" - }, - { - "@value": "torsten.schwede@unibas.ch" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://anzctr.org.au" + }, + "https://bioregistry.io/schema/#0000005": "ACTRN12623000498695", + "https://bioregistry.io/schema/#0000006": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1", + "https://bioregistry.io/schema/#0000008": "^ACTRN\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "ACTRN" + }, + "https://bioregistry.io/schema/#0000024": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=ACTRN12623000498695" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "anzctr" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/VTO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-8841-5870", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Willy Wong" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wawong@gmail.com" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/cldb", + "@id": "https://bioregistry.io/registry/casspc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Line Database" + "@value": "Eschmeyer's Catalog of Fishes" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/cldb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC" }, - "https://bioregistry.io/schema/#0000005": "cl3603", - "https://bioregistry.io/schema/#0000006": "http://bioinformatics.hsanmartino.it/hypercldb/$1.html", - "https://bioregistry.io/schema/#0000008": "^(cl|tum)\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "hypercldb" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cldb:", + "https://bioregistry.io/schema/#0000005": "5359", + "https://bioregistry.io/schema/#0000006": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioinformatics.hsanmartino.it/hypercldb/cl3603.html" + "@id": "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=5359" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cldb" + "@value": "casspc" } }, { - "@id": "https://bioregistry.io/metaregistry/cropoct", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms" + "@id": "https://bioregistry.io/registry/apollosv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://cropontology.org/ontology/CO_325" - }, - { - "@id": "https://cropontology.org/ontology/CO_320" - }, - { - "@id": "https://cropontology.org/ontology/CO_341" - }, - { - "@id": "https://cropontology.org/ontology/CO_365" - }, - { - "@id": "https://cropontology.org/ontology/CO_336" - }, - { - "@id": "https://cropontology.org/ontology/CO_339" - }, - { - "@id": "https://cropontology.org/ontology/CO_348" - }, - { - "@id": "https://cropontology.org/ontology/CO_326" - }, - { - "@id": "https://cropontology.org/ontology/CO_346" - }, - { - "@id": "https://cropontology.org/ontology/CO_333" - }, - { - "@id": "https://cropontology.org/ontology/CO_335" - }, - { - "@id": "https://cropontology.org/ontology/CO_360" - }, - { - "@id": "https://cropontology.org/ontology/CO_345" - }, - { - "@id": "https://cropontology.org/ontology/CO_357" - }, - { - "@id": "https://cropontology.org/ontology/CO_323" - }, - { - "@id": "https://cropontology.org/ontology/CO_337" - }, - { - "@id": "https://cropontology.org/ontology/CO_340" - }, - { - "@id": "https://cropontology.org/ontology/CO_347" - }, - { - "@id": "https://cropontology.org/ontology/CO_358" - }, - { - "@id": "https://cropontology.org/ontology/CO_366" - }, - { - "@id": "https://cropontology.org/ontology/CO_321" - }, - { - "@id": "https://cropontology.org/ontology/CO_327" - }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ApolloDev/apollo-sv" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Apollo Structured Vocabulary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_343" + "@id": "https://www.obofoundry.org/ontology/apollo_sv" }, { - "@id": "https://cropontology.org/ontology/CO_338" + "@id": "http://aber-owl.net/ontology/APOLLO_SV" }, { - "@id": "https://cropontology.org/ontology/CO_324" + "@id": "http://www.ontobee.org/ontology/APOLLO_SV" }, { - "@id": "https://cropontology.org/ontology/CO_334" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv" }, { - "@id": "https://cropontology.org/ontology/CO_359" + "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV" }, { - "@id": "https://cropontology.org/ontology/CO_331" - }, + "@id": "https://fairsharing.org/FAIRsharing.ngv2xx" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://cropontology.org/ontology/CO_330" + "@value": "ecology" }, { - "@id": "https://cropontology.org/ontology/CO_367" + "@value": "epidemiology" }, { - "@id": "https://cropontology.org/ontology/CO_370" + "@value": "population genetics" }, { - "@id": "https://cropontology.org/ontology/CO_322" + "@value": "biomedical science" }, { - "@id": "https://cropontology.org/ontology/CO_356" + "@value": "ontology" }, { - "@id": "https://cropontology.org/ontology/CO_350" + "@value": "obo" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Curation Tool" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.cropontology.org" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CO_325" + "@id": "https://github.com/ApolloDev/apollo-sv" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://cropontology.org/ontology/$1" + "https://bioregistry.io/schema/#0000005": "00000443", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/APOLLO_SV_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/apollo_sv.owl" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "https://cropontology.org/term/$1:$2" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6020-5919" - } - }, - { - "@id": "https://bioregistry.io/registry/langual", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Langual stands for \"langua alimentaria\" or \"language of food\". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Langua aLimentaria Thesaurus" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.langual.org" + "@id": "https://orcid.org/0000-0002-9881-1017" }, - "https://bioregistry.io/schema/#0000005": "B2067", - "https://bioregistry.io/schema/#0000006": "https://www.langual.org/langual_thesaurus.asp?termid=$1", - "https://bioregistry.io/schema/#0000008": "^B\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.langual.org/langual_thesaurus.asp?termid=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/APOLLO_SV_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.langual.org/langual_thesaurus.asp?termid=B2067" + "@id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000443" }, "https://bioregistry.io/schema/#0000029": { - "@value": "langual" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.record", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "apollosv" } }, { - "@id": "http://www.wikidata.org/entity/P1930", + "@id": "http://www.wikidata.org/entity/P493", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MF", + "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://www.ontobee.org/ontology/ADO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/MA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://aber-owl.net/ontology/MIXS", + "@id": "https://www.obofoundry.org/ontology/apollo_sv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.wikidata.org/entity/P11955", + "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/civic.gid", + "@id": "https://bioregistry.io/registry/asin", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/civic" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC gene" + "@value": "Amazon Standard Identification Number" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/civic.gid" + "@id": "https://registry.identifiers.org/registry/asin" }, { - "@id": "http://www.wikidata.org/entity/P11277" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" + "@id": "https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182" }, - "https://bioregistry.io/schema/#0000005": "272", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/gene/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "0471491039", + "https://bioregistry.io/schema/#0000006": "https://amzn.com/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/gene/", + "https://bioregistry.io/schema/#0000024": "https://amzn.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/gene/272" + "@id": "https://amzn.com/0471491039" }, "https://bioregistry.io/schema/#0000029": { - "@value": "civic.gid" - } - }, - { - "@id": "https://registry.identifiers.org/registry/doqcs.model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hovergen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://edamontology.org/data_2656", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011195", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vario", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://www.ontobee.org/ontology/TGMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ITO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.gf8yhy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.wikidata.org/entity/P9157", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/so", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "asin" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/ctd.disease", + "@id": "https://bioregistry.io/registry/ctd.chemical", "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.", "http://purl.org/dc/terms/isPartOf": [ @@ -21973,3703 +24967,3290 @@ } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CTD Disease" + "@value": "CTD Chemical" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE" + "@id": "https://registry.identifiers.org/registry/ctd.chemical" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL" }, { - "@id": "https://registry.identifiers.org/registry/ctd.disease" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical" } ], "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://ctdbase.org/" }, - "https://bioregistry.io/schema/#0000005": "D053716", - "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1", - "https://bioregistry.io/schema/#0000008": "^D\\d+$", + "https://bioregistry.io/schema/#0000005": "D001151", + "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=chem&acc=$1", + "https://bioregistry.io/schema/#0000008": "^[CD]\\d+$", "https://bioregistry.io/schema/#0000011": { "@id": "https://bioregistry.io/registry/mesh" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=", + "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=chem&acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=D053716" + "@id": "http://ctdbase.org/detail.go?type=chem&acc=D001151" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ctd.disease" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hmgte8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.wikidata.org/entity/P7471", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8zqzm9", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl.bacteria", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/imex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.azr389", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/DATACITE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0174", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@value": "ctd.chemical" } }, { - "@id": "https://bioregistry.io/registry/conoserver", + "@id": "https://bioregistry.io/registry/planp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails.", + "http://purl.org/dc/terms/description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ConoServer" + "@value": "Planarian Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.y00hz4" + "@id": "http://www.ontobee.org/ontology/PLANP" }, { - "@id": "https://registry.identifiers.org/registry/conoserver" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp" }, { - "@id": "https://www.uniprot.org/database/DB-0156" + "@id": "http://aber-owl.net/ontology/PLANP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER" + "@id": "https://www.obofoundry.org/ontology/planp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver" + "@id": "https://bioportal.bioontology.org/ontologies/PLANP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "neurophysiology" - }, - { - "@value": "life science" - }, - { - "@value": "statistics" + "@value": "obo" }, { - "@value": "synthetic biology" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.conoserver.org/" + "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" }, - "https://bioregistry.io/schema/#0000005": "2639", - "https://bioregistry.io/schema/#0000006": "http://www.conoserver.org/?page=card&table=protein&id=$1", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLANP_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0007-6796" - }, - "https://bioregistry.io/schema/#0000024": "http://www.conoserver.org/?page=card&table=protein&id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.conoserver.org/?page=card&table=protein&id=2639" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "conoserver" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.619eqr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/exac.variant", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ExAC Variant" + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/planp.owl" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://registry.identifiers.org/registry/exac.variant" + "@id": "https://bioregistry.io/registry/plana" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant" + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/pato" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://exac.broadinstitute.org/" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3528-5267" }, - "https://bioregistry.io/schema/#0000005": "22-46615880-T-C", - "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/variant/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/variant/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLANP_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://exac.broadinstitute.org/variant/22-46615880-T-C" + "@id": "http://purl.obolibrary.org/obo/PLANP_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "exac.variant" + "@value": "planp" } }, { - "@id": "https://bioregistry.io/registry/myco.tuber", + "@id": "https://registry.bio2kg.org/resource/evoc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/hso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.", + "http://purl.org/dc/terms/description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SVA-SE/HSO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TubercuList knowledge base" + "@value": "Health Surveillance Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList" + "@id": "https://www.obofoundry.org/ontology/hso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER" + "@id": "http://aber-owl.net/ontology/HSO" }, { - "@id": "https://registry.bio2kg.org/resource/tuberculist" + "@id": "http://www.ontobee.org/ontology/HSO" }, { - "@id": "https://www.uniprot.org/database/DB-0106" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso" }, { - "@id": "https://registry.identifiers.org/registry/myco.tuber" + "@id": "https://bioportal.bioontology.org/ontologies/HSO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "dna" - }, - { - "@value": "genome" + "@value": "ontology" }, { - "@value": "protein" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://tuberculist.epfl.ch/" + "@id": "https://w3id.org/hso" + }, + "https://bioregistry.io/schema/#0000005": "0000062", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hso.owl" }, - "https://bioregistry.io/schema/#0000005": "Rv1908c", - "https://bioregistry.io/schema/#0000006": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1", - "https://bioregistry.io/schema/#0000008": "^Rv\\d{4}(A|B|c)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "TubercuList" + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/obi" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8638-8525" }, - "https://bioregistry.io/schema/#0000024": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HSO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=Rv1908c" + "@id": "http://purl.obolibrary.org/obo/HSO_0000062" }, "https://bioregistry.io/schema/#0000029": { - "@value": "myco.tuber" + "@value": "hso" } }, { - "@id": "https://orcid.org/0000-0003-2408-2883", + "@id": "https://bioregistry.io/registry/lonza", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Contains information about cells and data sheets related to transfection.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jingshan Huang" + "@value": "Lonza" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "huang@southalabama.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://knowledge.lonza.com" + }, + "https://bioregistry.io/schema/#0000005": "968", + "https://bioregistry.io/schema/#0000006": "https://knowledge.lonza.com/cell?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://knowledge.lonza.com/cell?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://knowledge.lonza.com/cell?id=968" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lonza" } }, { - "@id": "https://registry.identifiers.org/registry/merops.inhibitor", + "@id": "https://bioregistry.io/registry/rnaloops", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RNAloops" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "structural bioinformatcs" + }, + { + "@value": "rna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rnaloops.cs.put.poznan.pl" + }, + "https://bioregistry.io/schema/#0000005": "91792", + "https://bioregistry.io/schema/#0000006": "https://rnaloops.cs.put.poznan.pl/search/details/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5320-2023" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://rnaloops.cs.put.poznan.pl/search/details/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://rnaloops.cs.put.poznan.pl/search/details/91792" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rnaloops" } }, { - "@id": "http://edamontology.org/data_2641", + "@id": "https://registry.bio2kg.org/resource/redfly", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/agro", + "@id": "https://bioregistry.io/registry/vbrc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Viral Bioinformatics Resource Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/vbrc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC" + }, + { + "@id": "https://registry.identifiers.org/registry/vbrc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://vbrc.org/" + }, + "https://bioregistry.io/schema/#0000005": "35742", + "https://bioregistry.io/schema/#0000006": "http://vbrc.org/gene_detail.asp?gene_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://vbrc.org/gene_detail.asp?gene_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://vbrc.org/gene_detail.asp?gene_id=35742" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "vbrc" } }, { - "@id": "https://registry.identifiers.org/registry/mmp.cat", + "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE", + "@id": "https://registry.bio2kg.org/resource/hpa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/CTENO", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_340", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.yytevr", + "@id": "https://registry.bio2kg.org/resource/pr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/fix", + "@id": "https://cropontology.org/ontology/CO_360", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/pirsf", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ypo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PIR Superfamily Classification System" + "@value": "Yeast Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.vssch2" - }, - { - "@id": "https://registry.identifiers.org/registry/pirsf" - }, - { - "@id": "http://edamontology.org/data_1136" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF" - }, - { - "@id": "https://registry.bio2kg.org/resource/pirsf" + "@id": "https://www.obofoundry.org/ontology/ypo" }, { - "@id": "https://www.uniprot.org/database/DB-0079" + "@id": "https://bioregistry.io/metaregistry/biocontext/YPO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "proteomics" - }, - { - "@value": "life science" + "@value": "ontology" }, { - "@value": "structure" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pir.georgetown.edu/" + "@id": "http://www.yeastgenome.org/" }, - "https://bioregistry.io/schema/#0000005": "PIRSF000100", - "https://bioregistry.io/schema/#0000006": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1", - "https://bioregistry.io/schema/#0000008": "^PIRSF\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=PIRSF000100" + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/YPO_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9163-5180" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/YPO_", "https://bioregistry.io/schema/#0000029": { - "@value": "pirsf" + "@value": "ypo" } }, { - "@id": "https://www.obofoundry.org/ontology/pato", + "@id": "https://registry.identifiers.org/registry/iuphar.ligand", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/omop", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format.", + "@id": "http://aber-owl.net/ontology/ZFA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Observational Medical Outcomes Partnership" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ohdsi.org/data-standardization/the-common-data-model/" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://athena.ohdsi.org/search-terms/terms/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "OMOP" - }, - "https://bioregistry.io/schema/#0000024": "https://athena.ohdsi.org/search-terms/terms/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://athena.ohdsi.org/search-terms/terms/1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "omop" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav", + "@id": "http://agroportal.lirmm.fr/ontologies/RO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/nucleardb", + "@id": "https://bioregistry.io/registry/shibase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.", + "http://purl.org/dc/terms/description": "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NucleaRDB" + "@value": "ShiBASE" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/shibase" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mgc.ac.cn/ShiBASE/" + }, + "https://bioregistry.io/schema/#0000005": "SDY2614", + "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=SDY2614" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "shibase" + } + }, + { + "@id": "https://bioregistry.io/registry/bgee.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bgee gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene" }, { - "@id": "https://registry.bio2kg.org/resource/nucleardb" + "@id": "https://registry.identifiers.org/registry/bgee.gene" }, { - "@id": "https://registry.identifiers.org/registry/nuclearbd" + "@id": "https://registry.bio2kg.org/resource/bgee" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "classification" + "@value": "gene expression" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.receptors.org/nucleardb/" + "@id": "https://www.bgee.org" }, - "https://bioregistry.io/schema/#0000005": "prgr_human", - "https://bioregistry.io/schema/#0000006": "http://www.receptors.org/nucleardb/proteins/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+\\_\\w+$", + "https://bioregistry.io/schema/#0000005": "FBgn0000015", + "https://bioregistry.io/schema/#0000006": "https://www.bgee.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "nuclearbd" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3947-488X" }, - "https://bioregistry.io/schema/#0000024": "http://www.receptors.org/nucleardb/proteins/", + "https://bioregistry.io/schema/#0000024": "https://www.bgee.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.receptors.org/nucleardb/proteins/prgr_human" + "@id": "https://www.bgee.org/gene/FBgn0000015" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nucleardb" + "@value": "bgee.gene" } }, { - "@id": "https://bioregistry.io/registry/hathitrust", + "@id": "https://fairsharing.org/FAIRsharing.wwy1ns", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/phosphosite.residue", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world.", + "http://purl.org/dc/terms/description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hathi Trust Digital Library" + "@value": "PhosphoSite Residue" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue" + }, + { + "@id": "https://registry.identifiers.org/registry/phosphosite.residue" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hathitrust.org" + "@id": "http://www.phosphosite.org/homeAction.do" }, - "https://bioregistry.io/schema/#0000005": "008893080", - "https://bioregistry.io/schema/#0000006": "https://catalog.hathitrust.org/Record/$1", + "https://bioregistry.io/schema/#0000005": "2842", + "https://bioregistry.io/schema/#0000006": "http://www.phosphosite.org/siteAction.do?id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://catalog.hathitrust.org/Record/", + "https://bioregistry.io/schema/#0000024": "http://www.phosphosite.org/siteAction.do?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://catalog.hathitrust.org/Record/008893080" + "@id": "http://www.phosphosite.org/siteAction.do?id=2842" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hathitrust" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "phosphosite.residue" } }, { - "@id": "https://bioregistry.io/registry/cattleqtldb", + "@id": "https://bioregistry.io/registry/tair.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.", + "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/qtldb" + "@id": "https://bioregistry.io/registry/tair" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome Cattle QTL" + "@value": "TAIR Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb" - }, - { - "@id": "https://registry.identifiers.org/registry/cattleqtldb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene" }, { - "@id": "https://registry.bio2kg.org/resource/cattleqtldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://registry.identifiers.org/registry/tair.gene" }, { - "@value": "dna" + "@id": "https://registry.bio2kg.org/resource/tair.gene" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "gene" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org/QTLdb" + "@id": "http://arabidopsis.org/index.jsp" }, - "https://bioregistry.io/schema/#0000005": "4685", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "2200934", + "https://bioregistry.io/schema/#0000006": "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", + "https://bioregistry.io/schema/#0000024": "http://arabidopsis.org/servlets/TairObject?accession=Gene:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:4685" + "@id": "http://arabidopsis.org/servlets/TairObject?accession=Gene:2200934" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cattleqtldb" + "@value": "tair.gene" } }, { - "@id": "https://www.obofoundry.org/ontology/miro", + "@id": "https://www.re3data.org/repository/r3d100012535", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/conso", + "@id": "https://fairsharing.org/FAIRsharing.hFLKCn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/umbbd.enzyme", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/drsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.", + "http://purl.org/dc/terms/description": "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Curation of Neurodegeneration Supporting Ontology" + "@value": "Drosophila RNAi Screening Center" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "neuroscience" - }, - { - "@value": "biology" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/drsc" }, { - "@value": "neurodegeneration" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pharmacome.github.io/conso/" + "@id": "http://flyrnai.org/" }, - "https://bioregistry.io/schema/#0000005": "CONSO00010", - "https://bioregistry.io/schema/#0000006": "https://pharmacome.github.io/conso/$1", - "https://bioregistry.io/schema/#0000008": "^CONSO\\d{5}$", + "https://bioregistry.io/schema/#0000005": "DRSC05221", + "https://bioregistry.io/schema/#0000006": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1", + "https://bioregistry.io/schema/#0000008": "^DRSC\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pharmacome.github.io/conso/", + "https://bioregistry.io/schema/#0000024": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pharmacome.github.io/conso/CONSO00010" + "@id": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=DRSC05221" }, "https://bioregistry.io/schema/#0000029": { - "@value": "conso" + "@value": "drsc" } }, { - "@id": "https://bioregistry.io/registry/go.ref", + "@id": "https://fairsharing.org/FAIRsharing.j75srj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dmba", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made.", + "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the developing mouse brain", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Database references" + "@value": "Developing Mouse Brain Atlas" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/go_ref" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.geneontology.org/cgi-bin/references.cgi" + "@id": "https://developingmouse.brain-map.org/" + }, + "https://bioregistry.io/schema/#0000005": "15567", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/dmba/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo" }, - "https://bioregistry.io/schema/#0000005": "0000041", - "https://bioregistry.io/schema/#0000006": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/dmba/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref0000041" + "@id": "https://biopragmatics.github.io/providers/dmba/15567" }, "https://bioregistry.io/schema/#0000029": { - "@value": "go.ref" + "@value": "dmba" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://www.ontobee.org/ontology/ONTONEO", + "@id": "https://fairsharing.org/FAIRsharing.dvyrsz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0002-5379-5359", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Asiyah Yu Lin" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "linikujp@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.rbjs3e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/hdr", + "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/soybase", + "@id": "https://fairsharing.org/FAIRsharing.pmg2vd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/agroportal", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A vocabulary and ontology repository for agronomy and related domains." + "@id": "https://bioportal.bioontology.org/ontologies/FBbi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ogg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "http://agroportal.lirmm.fr/ontologies/RO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_341" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/EO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_359" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_339" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_365" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_334" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/VT" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/LBO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODON" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/GEMET" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_345" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_357" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_348" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SIO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_366" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_347" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ONS" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/EOL" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_331" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/STY" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_325" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ATOL" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_330" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_356" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/EDAM" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/BCO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FOBI" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_358" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_336" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ENVO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/VARIO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/PR" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SIREN" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/TO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_337" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_324" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/PATO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_321" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_322" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/AGRO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_338" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/EFO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CDAO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CDNO" - }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://bitbucket.org/hegroup/ogg" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Ontology of Genes and Genomes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_327" + "@id": "http://www.ontobee.org/ontology/OGG" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FALDO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGG" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_320" + "@id": "https://bioportal.bioontology.org/ontologies/OGG" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PPO" + "@id": "http://aber-owl.net/ontology/OGG" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_340" + "@id": "https://www.obofoundry.org/ontology/ogg" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_360" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_333" - }, + "@id": "https://fairsharing.org/FAIRsharing.zmx7nn" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/GO" + "@value": "ontology" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CL" + "@value": "life science" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PCO" + "@value": "obo" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_323" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bitbucket.org/hegroup/ogg" + }, + "https://bioregistry.io/schema/#0000005": "3000887619", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGG_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ogg.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGG_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OGG_3000887619" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ogg" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011569", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/github", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GitHub is an online host of Git source code repositories.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://services.github.com/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "github" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_346" + "@id": "https://registry.identifiers.org/registry/github" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_343" + "@id": "https://fairsharing.org/FAIRsharing.c55d5e" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/BFO" - }, + "@id": "https://www.re3data.org/repository/r3d100010375" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_350" + "@value": "subject agnostic" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_335" + "@value": "software engineering" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_370" - }, + "@value": "knowledge and information systems" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/" + }, + "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry", + "https://bioregistry.io/schema/#0000006": "https://github.com/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://github.com/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://github.com/biopragmatics/bioregistry" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "github" + } + }, + { + "@id": "https://bioregistry.io/registry/ito", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OpenBioLink/ITO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Intelligence Task Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/PECO" + "@id": "http://aber-owl.net/ontology/ITO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC" + "@id": "https://fairsharing.org/FAIRsharing.89e853" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/LPT" + "@id": "https://registry.identifiers.org/registry/ito" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO" - }, + "@id": "https://bioportal.bioontology.org/ontologies/ITO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/PO" + "@value": "artificial intelligence" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/OM" + "@value": "ontology" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AgroPortal" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://agroportal.lirmm.fr" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "ENVO" + "@id": "https://openbiolink.github.io/ITOExplorer/" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://agroportal.lirmm.fr/ontologies/$1" + "https://bioregistry.io/schema/#0000005": "01625", + "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ITO/17/ito.owl" }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2404-1582" + "@id": "https://orcid.org/0000-0002-4855-2571" + }, + "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_01625" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ito" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2bdvmk", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene", + "@id": "http://edamontology.org/data_1177", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PATO", + "@id": "https://bioportal.bioontology.org/ontologies/PTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/gmd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/icd9", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.", + "http://purl.org/dc/terms/description": "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Golm Metabolome Database" + "@value": "International Classification of Diseases, 9th Revision" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.jykmkw" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011046" - }, - { - "@id": "https://registry.identifiers.org/registry/gmd" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD" + "@id": "http://www.wikidata.org/entity/P493" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.cdc.gov/nchs/icd/icd9.htm" + }, + "https://bioregistry.io/schema/#0000005": "277.9", + "https://bioregistry.io/schema/#0000006": "http://www.icd9data.com/getICD9Code.ashx?icd9=$1", + "https://bioregistry.io/schema/#0000008": "^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "metabolomics" + "@value": "ICD9_2005" }, { - "@value": "life science" + "@value": "MTHICD9_2006" + }, + { + "@value": "ICD9" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gmd.mpimp-golm.mpg.de/" - }, - "https://bioregistry.io/schema/#0000005": "68513255-fc44-4041-bc4b-4fd2fae7541d", - "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx", - "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gmd:", + "https://bioregistry.io/schema/#0000024": "http://www.icd9data.com/getICD9Code.ashx?icd9=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://gmd.mpimp-golm.mpg.de/Metabolites/68513255-fc44-4041-bc4b-4fd2fae7541d.aspx" + "@id": "http://www.icd9data.com/getICD9Code.ashx?icd9=277.9" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gmd" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PW", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "icd9" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://edamontology.org/data_2325", + "@id": "https://fairsharing.org/FAIRsharing.93g1th", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/SYMP", + "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-7628-5565", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michelle Giglio" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mgiglio@som.umaryland.edu" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/umbbd", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/umbbd.rule" - }, - { - "@id": "https://bioregistry.io/registry/umbbd.enzyme" - }, - { - "@id": "https://bioregistry.io/registry/umbbd.compound" - }, - { - "@id": "https://bioregistry.io/registry/umbbd.pathway" - }, - { - "@id": "https://bioregistry.io/registry/umbbd.reaction" - } - ] - }, - { - "@id": "https://registry.identifiers.org/registry/bigg.compartment", + "@id": "http://www.wikidata.org/entity/P3853", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/morpheus", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0003-1384-116X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Morpheus model repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/morpheus" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://morpheus.gitlab.io/" - }, - "https://bioregistry.io/schema/#0000005": "M0001", - "https://bioregistry.io/schema/#0000006": "https://morpheus.gitlab.io/models/$1", - "https://bioregistry.io/schema/#0000008": "^M[0-9]{4,}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://morpheus.gitlab.io/models/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://morpheus.gitlab.io/models/M0001" + "@value": "Barry Smith" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "morpheus" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "phismith@buffalo.edu" } }, { - "@id": "https://registry.identifiers.org/registry/lipidmaps", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/oryzabase.strain", + "@id": "https://bioregistry.io/registry/rbk", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.", + "http://purl.org/dc/terms/description": "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/informatics-isi-edu/gudmap-rbk/wiki/Create-citable-datasets" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryzabase Strain" + "@value": "Rebuilding a Kidney" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/oryzabase.strain" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN" + "@id": "https://bioregistry.io/metaregistry/biocontext/RBK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain" + "@id": "https://registry.identifiers.org/registry/rbk" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.78d3ad" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genomics" + }, + { + "@value": "developmental biology" + }, + { + "@value": "cell biology" + }, + { + "@value": "molecular biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" + "@id": "https://www.rebuildingakidney.org/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "Q-2958", + "https://bioregistry.io/schema/#0000006": "https://www.rebuildingakidney.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/", + "https://bioregistry.io/schema/#0000024": "https://www.rebuildingakidney.org/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/1" + "@id": "https://www.rebuildingakidney.org/id/Q-2958" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oryzabase.strain" + "@value": "rbk" } }, { - "@id": "https://bioregistry.io/registry/datanator.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "\tDatanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", + "@id": "https://www.re3data.org/repository/r3d100013314", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oryzabase.reference", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/civic.tid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/civic" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Datanator Reaction" + "@value": "CIViC Therapy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/datanator.reaction" + "@id": "https://registry.identifiers.org/registry/civic.tid" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icahn.mssm.edu/" + "@id": "https://civicdb.org/" }, - "https://bioregistry.io/schema/#0000005": "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N", - "https://bioregistry.io/schema/#0000006": "https://datanator.info/reaction/$1", - "https://bioregistry.io/schema/#0000008": "^.*?--%3E.*?$", + "https://bioregistry.io/schema/#0000005": "14", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/drugs/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://datanator.info/reaction/", + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/drugs/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://datanator.info/reaction/XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N" + "@id": "https://civicdb.org/links/drugs/14" }, "https://bioregistry.io/schema/#0000029": { - "@value": "datanator.reaction" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/genefarm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_327", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "civic.tid" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/mfomd", + "@id": "https://bioregistry.io/registry/pmap.cutdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).", + "http://purl.org/dc/terms/description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/jannahastings/mental-functioning-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mental Disease Ontology" + "@value": "CutDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/MFOMD" - }, - { - "@id": "https://www.obofoundry.org/ontology/mfomd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.q053vb" - }, - { - "@id": "http://aber-owl.net/ontology/MFOMD" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFOMD" + "@id": "https://registry.identifiers.org/registry/pmap.cutdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd" + "@id": "https://registry.bio2kg.org/resource/pmap.cutdb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "pathway" }, { - "@value": "psychiatry" + "@value": "enzyme" }, { - "@value": "ontology" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/jannahastings/mental-functioning-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000046", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFOMD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mfomd.owl" + "@id": "http://cutdb.burnham.org" }, + "https://bioregistry.io/schema/#0000005": "25782", + "https://bioregistry.io/schema/#0000006": "http://cutdb.burnham.org/relation/show/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3469-4923" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFOMD_", + "https://bioregistry.io/schema/#0000024": "http://cutdb.burnham.org/relation/show/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MFOMD_0000046" + "@id": "http://cutdb.burnham.org/relation/show/25782" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mfomd" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PHIPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/spbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mya1ff", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ado", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "pmap.cutdb" } }, { - "@id": "https://bioregistry.io/registry/omit", + "@id": "https://bioregistry.io/registry/gold", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).", + "http://purl.org/dc/terms/description": "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OmniSearch/omit" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for MicroRNA Target" + "@value": "Genomes Online Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT" + "@id": "https://www.re3data.org/repository/r3d100010808" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit" + "@id": "https://registry.identifiers.org/registry/gold" }, { - "@id": "https://www.obofoundry.org/ontology/omit" + "@id": "https://registry.bio2kg.org/resource/gold" }, { - "@id": "http://www.ontobee.org/ontology/OMIT" + "@id": "https://fairsharing.org/FAIRsharing.5q1p14" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "metagenomics" }, { - "@id": "http://aber-owl.net/ontology/OMIT" + "@value": "phylogenetics" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMIT" + "@value": "genome" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit" + "@value": "ontology and terminology" }, { - "@id": "https://fairsharing.org/FAIRsharing.mf91p5" + "@value": "genomics" }, { - "@id": "https://registry.identifiers.org/registry/omit" + "@value": "metabolomics" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://gold.jgi.doe.gov/" + }, + "https://bioregistry.io/schema/#0000005": "Gs0000008", + "https://bioregistry.io/schema/#0000006": "https://gold.jgi.doe.gov/resolver?id=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z][a-z][0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://gold.jgi.doe.gov/resolver?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://gold.jgi.doe.gov/resolver?id=Gs0000008" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gold" + } + }, + { + "@id": "https://bioregistry.io/registry/co_345", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Brachiaria (forages) ontology TD v5 - Version Oct 2016", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Brachiaria ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.9e9683" }, { - "@value": "obo" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_345" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345" }, + { + "@id": "https://cropontology.org/ontology/CO_345" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "ontology" }, { - "@value": "biology" + "@value": "life science" + }, + { + "@value": "agriculture" + }, + { + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://omit.cis.usouthal.edu/" + "@id": "https://cropontology.org/ontology/CO_345/Brachiaria" }, - "https://bioregistry.io/schema/#0000005": "0000069", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMIT_$1", + "https://bioregistry.io/schema/#0000005": "0000127", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_345:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/omit.owl" + "@id": "https://cropontology.org/ontology/CO_345/Brachiaria/owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mco" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2408-2883" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "OMIT" + "@id": "_:N80b3ec35ee2f44e1bd79e2dfa8a15987" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMIT_", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_345:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OMIT_0000069" + "@id": "https://cropontology.org/rdf/CO_345:0000127" }, "https://bioregistry.io/schema/#0000029": { - "@value": "omit" + "@value": "co_345" } }, { - "@id": "https://orcid.org/0000-0002-5990-4157", + "@id": "_:N80b3ec35ee2f44e1bd79e2dfa8a15987", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stefan Kuhn" + "@value": "Crop Ontology Helpdesk" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "stefan.kuhn@dmu.ac.uk" + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://orcid.org/0000-0002-6443-9376", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Jennifer Smith" - }, - { - "@value": "Jennifer R Smith" - } - ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jrsmith@mcw.edu" + "@id": "https://registry.identifiers.org/registry/massbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/aceview.worm", + "@id": "https://fairsharing.org/FAIRsharing.1tbrdz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/ECTO", + "@id": "https://registry.identifiers.org/registry/ardb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast", + "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/brenda", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/glyconavi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data.", + "http://purl.org/dc/terms/description": "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://glyconavi.github.io/doc/" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BRENDA Enzyme" + "@value": "GlycoNAVI" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010616" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda" - }, - { - "@id": "https://registry.bio2kg.org/resource/brenda" - }, - { - "@id": "https://registry.identifiers.org/registry/brenda" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.etp533" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA" + "@id": "https://registry.identifiers.org/registry/glyconavi" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA" + "@id": "https://fairsharing.org/FAIRsharing.wvp1t7" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "enzyme" + "@value": "glycomics" }, { "@value": "life science" + }, + { + "@value": "chemistry" + }, + { + "@value": "organic chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.brenda-enzymes.org/" - }, - "https://bioregistry.io/schema/#0000005": "1.1.1.1", - "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1", - "https://bioregistry.io/schema/#0000008": "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/eccode" + "@id": "https://www.noguchi.or.jp/" }, + "https://bioregistry.io/schema/#0000005": "GN_G03681DA", + "https://bioregistry.io/schema/#0000006": "https://glyconavi.org/hub/?id=$1", + "https://bioregistry.io/schema/#0000008": "^GN_[A-Za-z0-9_:]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9504-189X" + }, + "https://bioregistry.io/schema/#0000024": "https://glyconavi.org/hub/?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=1.1.1.1" + "@id": "https://glyconavi.org/hub/?id=GN_G03681DA" }, "https://bioregistry.io/schema/#0000029": { - "@value": "brenda" + "@value": "glyconavi" } }, { - "@id": "http://aber-owl.net/ontology/NGBO", + "@id": "https://bioregistry.io/registry/slctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sri Lanka Clinical Trials Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://slctr.lk/" + }, + "https://bioregistry.io/schema/#0000005": "SLCTR/2023/010", + "https://bioregistry.io/schema/#0000008": "^SLCTR/\\d{4}/\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "slctr" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE", + "@id": "http://www.ontobee.org/ontology/OBCS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/supfam", + "@id": "https://orcid.org/0000-0002-8214-1696", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sheng-Da Hsu" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ken.sd.hsu@gmail.com" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ny9vnm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/bto", + "@id": "https://registry.bio2kg.org/resource/lgicdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/ogi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.", + "http://purl.org/dc/terms/description": "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BRENDA-Enzymes/BTO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BRENDA Tissue Ontology" + "@value": "Ontology for genetic interval" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BTO" - }, - { - "@id": "http://aber-owl.net/ontology/BTO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1414v8" - }, - { - "@id": "https://registry.bio2kg.org/resource/bto" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO" - }, - { - "@id": "http://www.wikidata.org/entity/P5501" - }, - { - "@id": "https://registry.identifiers.org/registry/bto" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi" }, { - "@id": "https://www.obofoundry.org/ontology/bto" + "@id": "https://bioportal.bioontology.org/ontologies/OGI" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto" + "@id": "http://www.ontobee.org/ontology/OGI" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO" + "@id": "https://www.obofoundry.org/ontology/ogi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BTO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGI" }, { - "@id": "http://www.ontobee.org/ontology/BTO" + "@id": "http://aber-owl.net/ontology/OGI" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, { "@value": "ontology" }, { - "@value": "enzymology" - }, - { - "@value": "tissue" - }, - { - "@value": "life science" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.brenda-enzymes.org" + "@id": "https://code.google.com/archive/p/ontology-for-genetic-interval/" }, - "https://bioregistry.io/schema/#0000005": "0000590", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BTO_$1", + "https://bioregistry.io/schema/#0000005": "0000019", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGI_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/bto.owl" + "@id": "http://purl.obolibrary.org/obo/ogi.owl" }, - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9117-7909" + "@id": "https://orcid.org/0000-0002-5379-5359" }, "https://bioregistry.io/schema/#0000023": { - "@value": "BTO" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BTO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/BTO_0000590" + "@value": "OGI.owl" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGI_", "https://bioregistry.io/schema/#0000029": { - "@value": "bto" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "ogi" } }, { - "@id": "https://bioregistry.io/registry/funderregistry", + "@id": "https://bioregistry.io/registry/cgsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world.", + "http://purl.org/dc/terms/description": "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FunderRegistry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/funderregistry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.crossref.org/" + "@value": "Coli Genetic Stock Center" }, - "https://bioregistry.io/schema/#0000005": "100000001", - "https://bioregistry.io/schema/#0000006": "http://data.crossref.org/fundingdata/funder/10.13039/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{9,9}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "FundRef" + "@id": "https://fairsharing.org/FAIRsharing.1tbrdz" }, { - "@value": "crossref.funder" - } - ], - "https://bioregistry.io/schema/#0000024": "http://data.crossref.org/fundingdata/funder/10.13039/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://data.crossref.org/fundingdata/funder/10.13039/100000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "funderregistry" - } - }, - { - "@id": "https://bioregistry.io/registry/ird.segment", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IRD Segment Sequence" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC" + }, { - "@id": "https://registry.bio2kg.org/resource/ird.segment" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment" + "@id": "https://www.re3data.org/repository/r3d100010585" }, { - "@id": "https://registry.identifiers.org/registry/ird.segment" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT" + "@id": "https://registry.identifiers.org/registry/cgsc" + }, + { + "@id": "https://registry.bio2kg.org/resource/cgsc" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "life science" }, { - "@value": "protein" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.fludb.org/" + "@id": "http://cgsc.biology.yale.edu/index.php" }, - "https://bioregistry.io/schema/#0000005": "CY077097", - "https://bioregistry.io/schema/#0000006": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\_)?\\d+(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "74", + "https://bioregistry.io/schema/#0000006": "http://cgsc.biology.yale.edu/Site.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=", + "https://bioregistry.io/schema/#0000024": "http://cgsc.biology.yale.edu/Site.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=CY077097" + "@id": "http://cgsc.biology.yale.edu/Site.php?ID=74" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ird.segment" + "@value": "cgsc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door", + "@id": "https://semanticscience.org/resource/CHEMINF_000407", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS", + "@id": "https://www.re3data.org/repository/r3d100013361", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/topfind", + "@id": "https://bioportal.bioontology.org/ontologies/PPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/pcl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli.", + "http://purl.org/dc/terms/description": "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/provisional_cell_ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TopFind" + "@value": "Provisional Cell Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100012721" + "@id": "https://fairsharing.org/FAIRsharing.bfcfd0" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl" }, { - "@id": "https://registry.identifiers.org/registry/topfind" + "@id": "https://bioportal.bioontology.org/ontologies/PCL" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND" + "@id": "https://www.obofoundry.org/ontology/pcl" }, { - "@id": "https://fairsharing.org/FAIRsharing.rkpmhn" + "@id": "http://aber-owl.net/ontology/PCL" + }, + { + "@id": "http://www.ontobee.org/ontology/PCL" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://topfind.clip.msl.ubc.ca" - }, - "https://bioregistry.io/schema/#0000005": "Q9UKQ2", - "https://bioregistry.io/schema/#0000006": "http://clipserve.clip.ubc.ca/topfind/proteins/$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://clipserve.clip.ubc.ca/topfind/proteins/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://clipserve.clip.ubc.ca/topfind/proteins/Q9UKQ2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "topfind" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vajn3f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/cog", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.", - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cog.pathway" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/cog.category" + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "cell biology" + }, + { + "@value": "obo" } ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/provisional_cell_ontology" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cluster of orthologous genes" + "https://bioregistry.io/schema/#0000005": "0011124", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PCL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/pcl.owl" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://fairsharing.org/FAIRsharing.djsbw2" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://registry.bio2kg.org/resource/cog" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@id": "https://registry.identifiers.org/registry/cog" + "@id": "https://bioregistry.io/registry/pr" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/omo" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/go" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/nbo" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/so" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/" - }, - "https://bioregistry.io/schema/#0000005": "COG0001", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/cog/$1", - "https://bioregistry.io/schema/#0000008": "^COG\\d+$", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2265-5572" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "COG_Cluster" + "@id": "https://orcid.org/0000-0002-7073-9172" }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/cog/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PCL_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/cog/COG0001" + "@id": "http://purl.obolibrary.org/obo/PCL_0011124" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cog" + "@value": "pcl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ricenetdb.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/gmd.analyte", + "@id": "https://bioregistry.io/registry/ietf.language", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes.", + "http://purl.org/dc/terms/description": "Shorthand representations of languages and their subtypes", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Golm Metabolome Database Analyte" + "@value": "Internet Engineering Task Force Language Tag" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE" - }, - { - "@id": "https://registry.identifiers.org/registry/gmd.analyte" + "@id": "http://www.wikidata.org/entity/P305" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte" + "@id": "https://bartoc.org/en/node/2022" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gmd.mpimp-golm.mpg.de/" + "@id": "http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry" }, - "https://bioregistry.io/schema/#0000005": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", - "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Analytes/$1", - "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000005": "en-GB", + "https://bioregistry.io/schema/#0000008": "^\\w{2,3}(-\\w+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/Analytes/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://gmd.mpimp-golm.mpg.de/Analytes/4f0fa9b6-514f-4ff4-98cc-0009bc08eb80" + "https://bioregistry.io/schema/#0000023": { + "@value": "bcp47" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gmd.analyte" + "@value": "ietf.language" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-9765-2990", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ryan Brinkman" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rbrinkman@bccrc.ca" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0118", + "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ecoportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily", + "@id": "https://www.obofoundry.org/ontology/aeo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/tgd", + "@id": "http://aber-owl.net/ontology/NANDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/ndfrt", + "@id": "https://bioregistry.io/registry/reactome", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].", + "http://purl.org/dc/terms/description": "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Drug File - Reference Terminology" + "@value": "Reactome" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/NDF-RT" + "@id": "https://www.re3data.org/repository/r3d100010861" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209" + "@id": "https://registry.identifiers.org/registry/reactome" }, { - "@id": "https://registry.bio2kg.org/resource/ndfrt" + "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME" }, { - "@id": "http://aber-owl.net/ontology/NDFRT" + "@id": "https://registry.bio2kg.org/resource/reactome" }, { - "@id": "https://fairsharing.org/FAIRsharing.901nkj" + "@id": "https://semanticscience.org/resource/CHEMINF_000411" }, { - "@id": "http://www.wikidata.org/entity/P2115" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NDFRT" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "medicine" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome" }, { - "@value": "ontology" + "@id": "http://www.wikidata.org/entity/P3937" }, { - "@value": "physiology" + "@id": "http://edamontology.org/data_1155" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" }, { - "@value": "biomedical science" + "@value": "human" }, { - "@value": "health science" + "@value": "reaction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT" + "@id": "https://www.reactome.org/" }, - "https://bioregistry.io/schema/#0000005": "N0000001662", - "https://bioregistry.io/schema/#0000006": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#$1", - "https://bioregistry.io/schema/#0000008": "^N[0-9]{10}$", + "https://bioregistry.io/schema/#0000005": "R-BTA-418592", + "https://bioregistry.io/schema/#0000006": "https://reactome.org/content/detail/$1", + "https://bioregistry.io/schema/#0000008": "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N441b18bc09374ab9a3f9a92447d2330a" - }, "https://bioregistry.io/schema/#0000023": [ { - "@value": "NUI" + "@value": "REACT" }, { - "@value": "ndf-rt" + "@value": "RE" } ], - "https://bioregistry.io/schema/#0000024": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#", + "https://bioregistry.io/schema/#0000024": "https://reactome.org/content/detail/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000001662" + "@id": "https://reactome.org/content/detail/R-BTA-418592" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ndfrt" - } - }, - { - "@id": "_:N441b18bc09374ab9a3f9a92447d2330a", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael J. Lincoln MD" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "michael.lincoln@va.gov" + "@value": "reactome" } }, { - "@id": "https://registry.bio2kg.org/resource/pato", + "@id": "http://edamontology.org/data_2104", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM", + "@id": "https://www.uniprot.org/database/DB-0121", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/rgd.strain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0001-5025-5886", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Idan Gabdank" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gabdank@stanford.edu" } }, { - "@id": "https://bioregistry.io/registry/epo", + "@id": "https://bioregistry.io/registry/ihw", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology designed to support the semantic annotation of epidemiology resources", + "http://purl.org/dc/terms/description": "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Epidemiology Ontology" + "@value": "International Histocompatibility Workshop cell lines" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPO" - }, - { - "@id": "http://www.ontobee.org/ontology/EPO" - }, - { - "@id": "https://www.obofoundry.org/ontology/epo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://code.google.com/p/epidemiology-ontology/" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EPO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/epidemiology-ontology/epo.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EPO_", + "https://bioregistry.io/schema/#0000005": "IHW09326", + "https://bioregistry.io/schema/#0000008": "^IHW\\d+$", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { - "@value": "epo" - } - }, - { - "@id": "http://aber-owl.net/ontology/PCL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/conoserver", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "ihw" } }, { - "@id": "https://www.re3data.org/repository/r3d100012702", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/coriell", + "@id": "https://bioregistry.io/registry/begdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.", + "http://purl.org/dc/terms/description": "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Coriell Institute for Medical Research" + "@value": "Benchmark Energy & Geometry Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/coriell" + "@id": "https://registry.identifiers.org/registry/begdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell" + "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell" + "@id": "https://fairsharing.org/FAIRsharing.nbe4fq" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell" + "@id": "https://www.re3data.org/repository/r3d100011166" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ccr.coriell.org/" + "@id": "http://www.begdb.com" }, - "https://bioregistry.io/schema/#0000005": "GM17027", - "https://bioregistry.io/schema/#0000006": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{2}\\d+$", + "https://bioregistry.io/schema/#0000005": "4214", + "https://bioregistry.io/schema/#0000006": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=", + "https://bioregistry.io/schema/#0000024": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM17027" + "@id": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=4214" }, "https://bioregistry.io/schema/#0000029": { - "@value": "coriell" + "@value": "begdb" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR", + "@id": "https://fairsharing.org/FAIRsharing.bg7bb6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/GENEPIO", + "@id": "https://registry.identifiers.org/registry/gwascentral.study", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/hgmd", + "@id": "https://registry.identifiers.org/registry/ensembl.fungi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P1154", + "@id": "https://fairsharing.org/FAIRsharing.4jg0qw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-9052-2854", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Kim Durante" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kdurante@stanford.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs", + "@id": "https://bioregistry.io/registry/tctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Thai Clinical Trials Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.thaiclinicaltrials.org" + }, + "https://bioregistry.io/schema/#0000005": "TCTR20230429001", + "https://bioregistry.io/schema/#0000006": "https://www.thaiclinicaltrials.org/show/$1", + "https://bioregistry.io/schema/#0000008": "^TCTR\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.thaiclinicaltrials.org/show/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.thaiclinicaltrials.org/show/TCTR20230429001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tctr" } }, { - "@id": "http://edamontology.org/data_1162", + "@id": "https://registry.identifiers.org/registry/funcbase.human", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/homd.seq", + "@id": "https://bioregistry.io/registry/vegbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.", + "http://purl.org/dc/terms/description": "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HOMD Sequence Metainformation" + "@value": "VegBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/homd.seq" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ" - }, - { - "@id": "https://registry.identifiers.org/registry/homd.seq" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://www.re3data.org/repository/r3d100010153" }, { - "@value": "microbial" + "@id": "https://registry.identifiers.org/registry/vegbank" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.homd.org/index.php" + "@id": "http://vegbank.org/" }, - "https://bioregistry.io/schema/#0000005": "SEQF1003", - "https://bioregistry.io/schema/#0000006": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1", - "https://bioregistry.io/schema/#0000008": "^SEQF\\d+$", + "https://bioregistry.io/schema/#0000005": "VB.Ob.3736.GRSM125", + "https://bioregistry.io/schema/#0000006": "http://vegbank.org/cite/$1", + "https://bioregistry.io/schema/#0000008": "^VB\\.[A-Za-z][A-Za-z]\\..*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=", + "https://bioregistry.io/schema/#0000024": "http://vegbank.org/cite/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=SEQF1003" + "@id": "http://vegbank.org/cite/VB.Ob.3736.GRSM125" }, "https://bioregistry.io/schema/#0000029": { - "@value": "homd.seq" + "@value": "vegbank" } }, { - "@id": "https://bioregistry.io/registry/colao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.", + "@id": "http://www.wikidata.org/entity/P5806", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/insect-morphology/colao" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Coleoptera Anatomy Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.ontobee.org/ontology/COLAO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/COLAO" - }, - { - "@id": "http://aber-owl.net/ontology/COLAO" - }, - { - "@id": "https://www.obofoundry.org/ontology/colao" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/insect-morphology/colao" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COLAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/colao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/bspo" - }, - { - "@id": "https://bioregistry.io/registry/pato" - }, - { - "@id": "https://bioregistry.io/registry/aism" - }, - { - "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/caro" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0851-6883" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COLAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/COLAO_0000000" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "colao" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PTO", + "@id": "https://www.obofoundry.org/ontology/apo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YID", + "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/BTO", + "@id": "https://fairsharing.org/FAIRsharing.knp11s", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt", + "@id": "https://www.re3data.org/repository/r3d100011519", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.ontobee.org/ontology/OOSTT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/schema/#0000018", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "Terms from the source appear in the target resource" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "appears in" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000001" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom", + "@id": "https://www.obofoundry.org/ontology/ogms", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.drug", + "@id": "https://bioregistry.io/metaregistry/biocontext/skos", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein", + "@id": "https://bioportal.bioontology.org/ontologies/PDRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.veg2d6", + "@id": "http://edamontology.org/data_2653", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/metlin", + "@id": "https://bioregistry.io/registry/iuphar.family", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry.", + "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolite and Tandem Mass Spectrometry Database" + "@value": "IUPHAR family" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family" }, { - "@id": "https://registry.identifiers.org/registry/metlin" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY" }, { - "@id": "https://www.re3data.org/repository/r3d100012311" + "@id": "https://registry.identifiers.org/registry/iuphar.family" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN" + "@id": "https://registry.bio2kg.org/resource/iuphar.family" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://masspec.scripps.edu/" + "@id": "http://www.guidetopharmacology.org/" }, - "https://bioregistry.io/schema/#0000005": "1455", - "https://bioregistry.io/schema/#0000006": "http://metlin.scripps.edu/metabo_info.php?molid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000005": "78", + "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://metlin.scripps.edu/metabo_info.php?molid=", + "https://bioregistry.io/schema/#0000023": { + "@value": "IUPHARfam" + }, + "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://metlin.scripps.edu/metabo_info.php?molid=1455" + "@id": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=78" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metlin" + "@value": "iuphar.family" } }, { - "@id": "https://bioregistry.io/registry/imgt.ligm", + "@id": "https://bioregistry.io/registry/vac", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.", + "http://purl.org/dc/terms/description": "The Vaccine Adjuvant Compendium (VAC) was established in 2020 by the NIAID Division of Allergy, Immunology, and Transplantation to foster collaborations between NIAID-supported adjuvant researchers and the broader scientific community. The VAC displays adjuvant characteristics or metadata defined through NIAID-supported adjuvant studies to help vaccine developers identify suitable adjuvants for various vaccine indications, including immune-mediated and infectious diseases. In addition, the VAC welcomes the inclusion of adjuvant metadata generated by other research programs.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" + "@value": "Vaccine Adjuvant Compendium" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM" - }, - { - "@id": "https://registry.identifiers.org/registry/imgt.ligm" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/imgt.ligm" + "@value": "immunology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm" + "@value": "vaccines" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM" + "@value": "biology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.imgt.org/" + "@id": "https://vac.niaid.nih.gov" }, - "https://bioregistry.io/schema/#0000005": "M94112", - "https://bioregistry.io/schema/#0000006": "http://www.imgt.org/ligmdb/view?id=$1", - "https://bioregistry.io/schema/#0000008": "^M\\d+$", + "https://bioregistry.io/schema/#0000005": "15", + "https://bioregistry.io/schema/#0000006": "https://vac.niaid.nih.gov/view?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.imgt.org/ligmdb/view?id=", + "https://bioregistry.io/schema/#0000024": "https://vac.niaid.nih.gov/view?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.imgt.org/ligmdb/view?id=M94112" + "@id": "https://vac.niaid.nih.gov/view?id=15" }, "https://bioregistry.io/schema/#0000029": { - "@value": "imgt.ligm" + "@value": "vac" } }, { - "@id": "https://bioregistry.io/registry/cellosaurus", + "@id": "https://registry.identifiers.org/registry/pw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/slm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.", + "http://purl.org/dc/terms/description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/calipho-sib/cellosaurus" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellosaurus" + "@value": "SwissLipid" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus" + "@id": "https://registry.identifiers.org/registry/slm" }, { - "@id": "http://www.wikidata.org/entity/P3289" + "@id": "https://www.uniprot.org/database/DB-0197" }, { - "@id": "https://www.re3data.org/repository/r3d100013293" + "@id": "https://fairsharing.org/FAIRsharing.pxr7x2" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS" + "@id": "http://www.wikidata.org/entity/P8691" }, { - "@id": "https://registry.identifiers.org/registry/cellosaurus" + "@id": "https://www.re3data.org/repository/r3d100012603" }, { - "@id": "https://fairsharing.org/FAIRsharing.hkk309" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "thesaurus" - }, - { - "@value": "cell lines" - }, - { - "@value": "ontologies" + "@value": "ontology" }, { - "@value": "controlled vocabularies" + "@value": "metabolomics" }, { - "@value": "ontology" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cellosaurus.org" + "@id": "http://www.swisslipids.org/#/" }, - "https://bioregistry.io/schema/#0000005": "0440", - "https://bioregistry.io/schema/#0000006": "https://www.cellosaurus.org/CVCL_$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{4}$", + "https://bioregistry.io/schema/#0000005": "000000341", + "https://bioregistry.io/schema/#0000006": "https://www.swisslipids.org/#/entity/SLM:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/calipho-sib/cellosaurus/raw/master/cellosaurus.obo" + "@id": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/swisslipids.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2826-6444" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "CVCL" + "@id": "https://orcid.org/0000-0003-2148-9135" }, - "https://bioregistry.io/schema/#0000024": "https://www.cellosaurus.org/CVCL_", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "swisslipid" + }, + { + "@value": "swisslipids" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.swisslipids.org/#/entity/SLM:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cellosaurus.org/CVCL_0440" + "@id": "https://www.swisslipids.org/#/entity/SLM:000000341" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "slm" } }, { - "@id": "https://bioregistry.io/registry/topdb", + "@id": "https://bioregistry.io/registry/faldo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.", + "http://purl.org/dc/terms/description": "It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OBF/FALDO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Topology Data Bank of Transmembrane Proteins" + "@value": "Feature Annotation Location Description Ontology " }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb" + "@id": "http://agroportal.lirmm.fr/ontologies/FALDO" }, { - "@id": "http://edamontology.org/data_2789" + "@id": "https://bioportal.bioontology.org/ontologies/FALDO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB" + "@id": "https://fairsharing.org/FAIRsharing.haxp7g" }, { - "@id": "https://registry.bio2kg.org/resource/topdb" + "@id": "http://aber-owl.net/ontology/FALDO" }, { - "@id": "https://registry.identifiers.org/registry/topdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/faldo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "genetics" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://topdb.enzim.hu/" + "@id": "http://biohackathon.org/resource/faldo" + }, + "https://bioregistry.io/schema/#0000005": "ForwardStrandPosition", + "https://bioregistry.io/schema/#0000006": "http://biohackathon.org/resource/faldo#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/FALDO/1/faldo.owl" }, - "https://bioregistry.io/schema/#0000005": "AP00378", - "https://bioregistry.io/schema/#0000006": "http://topdb.enzim.hu/?m=show&id=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://topdb.enzim.hu/?m=show&id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N65fbd436827845f5847a7d3a01a8aa66" + }, + "https://bioregistry.io/schema/#0000024": "http://biohackathon.org/resource/faldo#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://topdb.enzim.hu/?m=show&id=AP00378" + "@id": "http://biohackathon.org/resource/faldo#ForwardStrandPosition" }, "https://bioregistry.io/schema/#0000029": { - "@value": "topdb" + "@value": "faldo" } }, { - "@id": "http://www.ontobee.org/ontology/EDAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "_:N65fbd436827845f5847a7d3a01a8aa66", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FALDO group" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "faldo@googlegroups.com" } }, { - "@id": "https://bioregistry.io/registry/obib", + "@id": "https://bioregistry.io/registry/ncit", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.", + "http://purl.org/dc/terms/description": "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/biobanking/biobanking" + "@id": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Biobanking" + "@value": "NCI Thesaurus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib" + "@id": "https://registry.identifiers.org/registry/ncit" }, { - "@id": "https://www.obofoundry.org/ontology/obib" + "@id": "http://www.ontobee.org/ontology/NCIT" }, { - "@id": "https://fairsharing.org/FAIRsharing.bxc508" + "@id": "https://registry.bio2kg.org/resource/ncit" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBIB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206" }, { - "@id": "http://www.ontobee.org/ontology/OBIB" + "@id": "https://bioportal.bioontology.org/ontologies/NCIT" }, { - "@id": "http://aber-owl.net/ontology/OBIB" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4cvwxa" + }, + { + "@id": "http://aber-owl.net/ontology/NCIT" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt" + }, + { + "@id": "http://www.wikidata.org/entity/P1748" + }, + { + "@id": "https://www.obofoundry.org/ontology/ncit" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "health science" + "@value": "preclinical studies" }, { "@value": "obo" }, + { + "@value": "thesaurus" + }, + { + "@value": "biomedical science" + }, { "@value": "ontology" + }, + { + "@value": "translational medicine" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/biobanking/biobanking" + "@id": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" }, - "https://bioregistry.io/schema/#0000005": "0000389", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBIB_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "C138986", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCIT_$1", + "https://bioregistry.io/schema/#0000008": "^C\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/obib.owl" + "@id": "http://purl.obolibrary.org/obo/ncit.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBIB_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OBIB_0000389" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "obib" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bold.taxonomy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/pmr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Resource for the community to store, retrieve, search, reference, and reuse CellML models.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Physical Medicine and Rehabilitation" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://registry.identifiers.org/registry/pmr" + "@id": "https://bioregistry.io/registry/mco" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PMR" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "http://aber-owl.net/ontology/PMR" + "@id": "https://bioregistry.io/registry/ontoavida" }, { - "@id": "https://fairsharing.org/FAIRsharing.bcjrnq" + "@id": "https://bioregistry.io/registry/ecto" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9114-8737" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "ontology" + "@value": "NCI" }, { - "@value": "physiology" + "@value": "NCI2004_11_17" }, { - "@value": "systems biology" + "@value": "ncithesaurus" }, { - "@value": "mathematics" + "@value": "NCITm" }, { - "@value": "biomedical science" + "@value": "NCIt" }, { - "@value": "life science" + "@value": "NCI_Thesaurus" + }, + { + "@value": "NCIT_Thesaurus" + }, + { + "@value": "NCIT" + }, + { + "@value": "NCit" + }, + { + "@value": "NCITt" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.auckland.ac.nz/en.html" - }, - "https://bioregistry.io/schema/#0000005": "ebf69ca24298b28b2361e7d43eb52d6c", - "https://bioregistry.io/schema/#0000006": "https://models.physiomeproject.org/exposure/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9]{32,32}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/PMR/4/pmr.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8646-5463" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCIT_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/040gcmg81" }, - "https://bioregistry.io/schema/#0000024": "https://models.physiomeproject.org/exposure/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://models.physiomeproject.org/exposure/ebf69ca24298b28b2361e7d43eb52d6c" + "@id": "http://purl.obolibrary.org/obo/NCIT_C138986" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pmr" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FOODON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "ncit" } }, { - "@id": "https://fairsharing.org/FAIRsharing.xwqg9h", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ensembl.plant", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.", + "@id": "https://www.obofoundry.org/ontology/pgdso", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Plants" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant" - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl.plant" - }, - { - "@id": "https://registry.bio2kg.org/resource/ensembl.plant" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://plants.ensembl.org/" - }, - "https://bioregistry.io/schema/#0000005": "AT1G73965", - "https://bioregistry.io/schema/#0000006": "https://plants.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\.\\d+)?(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://plants.ensembl.org/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://plants.ensembl.org/id/AT1G73965" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl.plant" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/xlmod", + "@id": "https://bioregistry.io/registry/gemet", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.", + "http://purl.org/dc/terms/description": "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HUPO-PSI/xlmod-CV" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" + "@value": "General Multilingual Environmental Thesaurus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/XLMOD" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6ccbe6" - }, - { - "@id": "http://aber-owl.net/ontology/XLMOD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XLMOD" + "@id": "http://agroportal.lirmm.fr/ontologies/GEMET" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod" + "@id": "https://bartoc.org/en/node/16" }, { - "@id": "https://www.obofoundry.org/ontology/xlmod" + "@id": "https://fairsharing.org/FAIRsharing.9091d9" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "omics" - }, - { - "@value": "obo" - }, - { - "@value": "metabolomics" + "@value": "biodiversity" }, { - "@value": "ontology" + "@value": "environmental science" }, { - "@value": "chemical biology" + "@value": "ecology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.psidev.info/groups/controlled-vocabularies" - }, - "https://bioregistry.io/schema/#0000005": "00050", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XLMOD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/xlmod.owl" + "@id": "https://www.eionet.europa.eu/gemet/en/themes/" }, + "https://bioregistry.io/schema/#0000005": "627", + "https://bioregistry.io/schema/#0000006": "https://www.eionet.europa.eu/gemet/en/concept/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4978-0864" + "@id": "_:N748c45da2ac44701ab1793f47c9389da" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XLMOD_", + "https://bioregistry.io/schema/#0000024": "https://www.eionet.europa.eu/gemet/en/concept/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/XLMOD_00050" + "@id": "https://www.eionet.europa.eu/gemet/en/concept/627" }, "https://bioregistry.io/schema/#0000029": { - "@value": "xlmod" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.61c2x6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "gemet" } }, { - "@id": "https://registry.identifiers.org/registry/tair.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "_:N748c45da2ac44701ab1793f47c9389da", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Eionet Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@eionet.europa.eu" } }, { - "@id": "https://www.obofoundry.org/ontology/wbphenotype", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ricenetdb.protein", + "@id": "https://bioregistry.io/registry/cadsr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", + "http://purl.org/dc/terms/description": "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RiceNetDB Protein" + "@value": "Cancer Data Standards Registry and Repository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN" - }, - { - "@id": "https://registry.identifiers.org/registry/ricenetdb.protein" + "@id": "https://registry.identifiers.org/registry/cadsr" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bis.zju.edu.cn/ricenetdb/" + "@id": "https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki" }, - "https://bioregistry.io/schema/#0000005": "LOC_Os01g49190", - "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}$", + "https://bioregistry.io/schema/#0000005": "3771992", + "https://bioregistry.io/schema/#0000006": "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]", + "https://bioregistry.io/schema/#0000008": "^[0-9]*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cadsr:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=LOC_Os01g49190" + "@id": "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=3771992]" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ricenetdb.protein" + "@value": "cadsr" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APD", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao", + "@id": "https://bartoc.org/en/node/181", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5ab0n7", + "@id": "https://fairsharing.org/FAIRsharing.5pfx4r", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/mamo", + "@id": "https://bioregistry.io/registry/sael", + "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "sael" } }, { - "@id": "https://bioregistry.io/registry/hoelzel", + "@id": "https://bioregistry.io/registry/igrhcellid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog.", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hölzel Diagnostika" + "@value": "Integrated Genomic Resources of human Cell Lines for Identification" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "assays" - }, - { - "@value": "inhibitors" - }, - { - "@value": "elisa-kits" - }, - { - "@value": "antibodies" - }, - { - "@value": "proteins" - }, - { - "@value": "biologics" - }, - { - "@value": "vendor" - }, - { - "@value": "life sciences" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hoelzel-biotech.com" + "@id": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi" }, - "https://bioregistry.io/schema/#0000005": "40592-R001-100", - "https://bioregistry.io/schema/#0000006": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1", + "https://bioregistry.io/schema/#0000005": "ACHN", + "https://bioregistry.io/schema/#0000006": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0009-0009-3816-8777" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "hölzel" - }, - "https://bioregistry.io/schema/#0000024": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=", + "https://bioregistry.io/schema/#0000024": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=40592-R001-100" + "@id": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=ACHN" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hoelzel" - } - }, - { - "@id": "https://registry.identifiers.org/registry/tritrypdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "igrhcellid" } }, { - "@id": "https://registry.identifiers.org/registry/iuphar.ligand", + "@id": "https://www.obofoundry.org/ontology/ppo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY", + "@id": "https://www.obofoundry.org/ontology/chmo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes", + "@id": "https://semanticscience.org/resource/CHEMINF_000408", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS", + "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii", + "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm", + "@id": "https://fairsharing.org/FAIRsharing.6bd5k6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.e28v7g", + "@id": "https://bioportal.bioontology.org/ontologies/RDFS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/registry/pubchem.substance", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/pubchem" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubChem Substance ID (SID)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://semanticscience.org/resource/CHEMINF_000141" + }, + { + "@id": "http://www.wikidata.org/entity/P2153" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE" + }, + { + "@id": "https://registry.bio2kg.org/resource/pubchem.substance" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance" + }, + { + "@id": "https://registry.identifiers.org/registry/pubchem.substance" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "small molecule" + }, + { + "@value": "protein" + }, + { + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "100101", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/substance/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "DSSTox_Generic_SID" + }, + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/substance/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/substance/100101" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pubchem.substance" } }, { - "@id": "https://bioregistry.io/registry/mondo", + "@id": "https://bioregistry.io/registry/eccode", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.", + "http://purl.org/dc/terms/description": "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/mondo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mondo Disease Ontology" + "@value": "Enzyme Commission Code" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/mondo" + "@id": "http://www.wikidata.org/entity/P591" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo" + "@id": "https://www.re3data.org/repository/r3d100010803" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO" + "@id": "https://bartoc.org/en/node/671" }, { - "@id": "http://aber-owl.net/ontology/MONDO" + "@id": "https://registry.bio2kg.org/resource/intenz" }, { - "@id": "https://fairsharing.org/FAIRsharing.b2979t" + "@id": "https://registry.identifiers.org/registry/ec-code" }, { - "@id": "http://www.wikidata.org/entity/P5270" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code" }, { - "@id": "http://www.ontobee.org/ontology/MONDO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EC" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MONDO" + "@id": "http://edamontology.org/data_1011" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rfLD2u" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE" + }, + { + "@id": "https://www.uniprot.org/database/DB-0024" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "medicine" + "@value": "biochemistry" }, { - "@value": "obo" + "@value": "enzymology" }, { - "@value": "ontology" + "@value": "classification" }, { - "@value": "infectious disease medicine" + "@value": "enzyme" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://monarch-initiative.github.io/mondo" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MONDO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mondo.owl" + "@id": "https://www.enzyme-database.org/" }, + "https://bioregistry.io/schema/#0000005": "1.1.1.1", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5208-3432" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MONDO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MONDO_0000001" + "@id": "https://orcid.org/0000-0003-3889-2879" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mondo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/worfdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/genatlas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.AYegqK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P686", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ecyano.model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/EHDAA2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/iceberg.ime", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.", - "http://purl.org/dc/terms/isPartOf": [ + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/iceberg" + "@value": "ECCODE" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ICEberg integrative and mobilizable element" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "EC" + }, { - "@value": "biology" + "@value": "EC-CODE" }, { - "@value": "genomics" + "@value": "EC number" + }, + { + "@value": "EC_CODE" + }, + { + "@value": "intenz" + }, + { + "@value": "ec-code" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_IME.php?type=alpha&alpha=100" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/iceberg.ime:", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=1_IME" + "@id": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1.1.1.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iceberg.ime" + "@value": "eccode" } }, { - "@id": "https://registry.identifiers.org/registry/mmp.fun", + "@id": "https://registry.identifiers.org/registry/pmp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3xwMon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/iao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://aber-owl.net/ontology/OM", + "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ligea", + "@id": "https://bioregistry.io/registry/arraymap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Polymorphism and mutation databases", + "http://purl.org/dc/terms/description": "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cancer cell LInes GEne fusions portAl" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://hpc-bioinformatics.cineca.it/fusion/main" - }, - "https://bioregistry.io/schema/#0000005": "CCLE_867", - "https://bioregistry.io/schema/#0000006": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/CCLE_867" + "@value": "ArrayMap" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ligea" - } - }, - { - "@id": "https://bioregistry.io/registry/umbbd.enzyme", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/umbbd" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.re3data.org/repository/r3d100012630" + }, + { + "@id": "https://registry.identifiers.org/registry/arraymap" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1fbc5y" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EAWAG Biocatalysis/Biodegradation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme" + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.enzyme" + "@value": "life science" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME" + "@value": "bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://umbbd.ethz.ch/" + "@id": "https://www.arraymap.org" }, - "https://bioregistry.io/schema/#0000005": "e0333", - "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1", - "https://bioregistry.io/schema/#0000008": "^e\\d+$", + "https://bioregistry.io/schema/#0000005": "icdom:8500_3", + "https://bioregistry.io/schema/#0000006": "https://www.arraymap.org/pgx:$1", + "https://bioregistry.io/schema/#0000008": "^[\\w\\-:,]{3,64}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UM-BBD_enzymeID" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9903-4248" }, - "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=", + "https://bioregistry.io/schema/#0000024": "https://www.arraymap.org/pgx:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=e0333" + "@id": "https://www.arraymap.org/pgx:icdom:8500_3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "umbbd.enzyme" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/genetree", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hogenom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/oostt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "arraymap" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE", + "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/rapdb", + "@id": "http://www.ontobee.org/ontology/RO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://orcid.org/0000-0002-1795-5570", + "@id": "https://orcid.org/0000-0001-6875-5360", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Amanda Hicks" + "@value": "John Graybeal" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "aellenhicks@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4495", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dragondb.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "support@bioontology.org" + }, + { + "@value": "jgraybeal@stanford.edu" + } + ] }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD", + "@id": "https://registry.identifiers.org/registry/oryzabase.mutant", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid", + "@id": "https://registry.bio2kg.org/resource/scop", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.pathway", + "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/pseudogene", + "@id": "https://bioregistry.io/registry/bigg.metabolite", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.", + "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PseudoGene" + "@value": "BiGG Metabolite" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/pseudogene" + "@id": "https://registry.identifiers.org/registry/bigg.metabolite" }, { - "@id": "https://bioportal.bioontology.org/ontologies/pseudo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pseudogene.org" + "@id": "http://bigg.ucsd.edu/universal/metabolites" }, - "https://bioregistry.io/schema/#0000005": "PGOHUM00000289843", - "https://bioregistry.io/schema/#0000006": "http://tables.pseudogene.org/[?species_name]/$1", + "https://bioregistry.io/schema/#0000005": "12dgr161", + "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/universal/metabolites/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9746-371" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "pseudogene.org" - }, - "https://bioregistry.io/schema/#0000024": "http://tables.pseudogene.org/[?species_name]/", + "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/universal/metabolites/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://tables.pseudogene.org/[?species_name]/PGOHUM00000289843" + "@id": "http://bigg.ucsd.edu/models/universal/metabolites/12dgr161" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pseudogene" + "@value": "bigg.metabolite" } }, { - "@id": "https://www.uniprot.org/database/DB-0019", + "@id": "https://orcid.org/0000-0002-0412-9018", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Harry E. Pence" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pencehe@oneonta.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cryptodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://edamontology.org/data_2609", + "@id": "https://registry.bio2kg.org/resource/pride", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/nlx.qual", + "@id": "https://bioregistry.io/registry/salmon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "http://purl.org/dc/terms/description": "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Qualities" + "@value": "Salmon Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "qualities" + "@id": "http://aber-owl.net/ontology/SALMON" }, { - "@value": "dispositions" + "@id": "https://bioportal.bioontology.org/ontologies/SALMON" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://github.com/DataONEorg/sem-prov-ontologies/" }, - "https://bioregistry.io/schema/#0000005": "100810", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1", + "https://bioregistry.io/schema/#0000005": "00000674", + "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/SALMON_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/SALMON/2/salmon.owl" + }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXQUAL" + "@id": "https://orcid.org/0000-0002-0381-3766" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_", + "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/SALMON_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_100810" + "@id": "https://purl.dataone.org/odo/SALMON_00000674" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.qual" - } - }, - { - "@id": "https://orcid.org/0000-0001-8149-5890", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Robert Hoehndorf" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "robert.hoehndorf@kaust.edu.sa" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gitlab", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "salmon" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN", + "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PCO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/gtex", + "@id": "https://bioregistry.io/registry/cattleqtldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/qtldb" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genotype-Tissue Expression" + "@value": "Animal Genome Cattle QTL" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gtex" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex" + "@id": "https://registry.bio2kg.org/resource/cattleqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx" + "@id": "https://registry.identifiers.org/registry/cattleqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genome" + }, + { + "@value": "dna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gtexportal.org" + "@id": "https://www.animalgenome.org/QTLdb" }, - "https://bioregistry.io/schema/#0000005": "BRIP1", - "https://bioregistry.io/schema/#0000006": "https://www.gtexportal.org/home/gene/$1", - "https://bioregistry.io/schema/#0000008": "^\\w.+$", + "https://bioregistry.io/schema/#0000005": "4685", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.gtexportal.org/home/gene/", + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gtexportal.org/home/gene/BRIP1" + "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:4685" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gtex" + "@value": "cattleqtldb" } }, { - "@id": "https://bioregistry.io/registry/eaglei", + "@id": "https://bioregistry.io/registry/scr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Discovery tool for biomedical research resources available at institutions throughout the U.S.", + "http://purl.org/dc/terms/description": "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eagle-i" + "@value": "SciCrunch Registry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR" }, { - "@id": "https://www.re3data.org/repository/r3d100011564" + "@id": "https://fairsharing.org/FAIRsharing.kj4pvk" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "neurobiology" + }, + { + "@value": "interactive portal" + }, + { + "@value": "nih initiative" + }, + { + "@value": "rrid" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://hawaii.eagle-i.net" + "@id": "https://scicrunch.org/browse/resourcedashboard" }, - "https://bioregistry.io/schema/#0000005": "0000012b-5661-2f63-2f73-b43980000000", - "https://bioregistry.io/schema/#0000006": "http://hawaii.eagle-i.net/i/$1", + "https://bioregistry.io/schema/#0000005": "022586", + "https://bioregistry.io/schema/#0000006": "http://scicrunch.org/resolver/SCR_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://hawaii.eagle-i.net/i/", + "https://bioregistry.io/schema/#0000023": { + "@value": "scicrunch" + }, + "https://bioregistry.io/schema/#0000024": "http://scicrunch.org/resolver/SCR_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://hawaii.eagle-i.net/i/0000012b-5661-2f63-2f73-b43980000000" + "@id": "http://scicrunch.org/resolver/SCR_022586" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eaglei" + "@value": "scr" } }, { - "@id": "https://bioregistry.io/registry/ms", + "@id": "https://bioregistry.io/registry/txpo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.", + "http://purl.org/dc/terms/description": "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HUPO-PSI/psi-ms-CV" + "@id": "https://github.com/txpo-ontology/TXPO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mass spectrometry ontology" + "@value": "Toxic Process Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/MS" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms" - }, - { - "@id": "https://www.obofoundry.org/ontology/ms" - }, - { - "@id": "https://registry.identifiers.org/registry/ms" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MS" + "@id": "http://www.ontobee.org/ontology/TXPO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MS" + "@id": "https://bioportal.bioontology.org/ontologies/TXPO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms" + "@id": "https://www.obofoundry.org/ontology/txpo" }, { - "@id": "http://aber-owl.net/ontology/MS" + "@id": "http://aber-owl.net/ontology/TXPO" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -25681,745 +28262,977 @@ } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.psidev.info/groups/controlled-vocabularies" + "@id": "https://toxpilot.nibiohn.go.jp/" }, - "https://bioregistry.io/schema/#0000005": "1000560", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MS_$1", + "https://bioregistry.io/schema/#0000005": "0002066", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TXPO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ms.owl" + "@id": "http://purl.obolibrary.org/obo/txpo.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9673-1283" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TXPO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/TXPO_0002066" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "txpo" + } + }, + { + "@id": "http://aber-owl.net/ontology/OBIB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/om", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HajoRijgersberg/OM" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of units of Measure" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/uo" + "@id": "http://aber-owl.net/ontology/OM" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioportal.bioontology.org/ontologies/OM" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/OM" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/om" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/HajoRijgersberg/OM" + }, + "https://bioregistry.io/schema/#0000005": "Dimension", + "https://bioregistry.io/schema/#0000006": "http://www.ontology-of-units-of-measure.org/resource/om-2/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/HajoRijgersberg/OM/master/om-2.0.rdf" + }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1767-2343" + "@id": "_:N1bbada1527ec4d42b30fec1f0ff0bdb1" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MS_", + "https://bioregistry.io/schema/#0000024": "http://www.ontology-of-units-of-measure.org/resource/om-2/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MS_1000560" + "@id": "http://www.ontology-of-units-of-measure.org/resource/om-2/Dimension" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ms" + "@value": "om" } }, { - "@id": "https://bioregistry.io/registry/cgd", + "@id": "_:N1bbada1527ec4d42b30fec1f0ff0bdb1", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hajo Rijgersberg" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hajo.rijgersberg@wur.nl" + } + }, + { + "@id": "http://edamontology.org/data_2700", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://orcid.org/0000-0002-5153-9079", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "John-Marc Chandonia" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "JMChandonia@lbl.gov" + } + }, + { + "@id": "http://www.ontobee.org/ontology/RXNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/NOMEN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0119", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/eco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products.", + "http://purl.org/dc/terms/description": "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/evidenceontology/evidenceontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Candida Genome Database" + "@value": "Evidence ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD" + "@id": "https://bartoc.org/en/node/1028" }, { - "@id": "https://registry.bio2kg.org/resource/cgd" + "@id": "http://www.ontobee.org/ontology/ECO" }, { - "@id": "https://fairsharing.org/FAIRsharing.j7j53" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGD" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco" }, { - "@id": "https://www.uniprot.org/database/DB-0126" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD" + "@id": "http://aber-owl.net/ontology/ECO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd" + "@id": "https://bioportal.bioontology.org/ontologies/ECO" }, { - "@id": "https://registry.identifiers.org/registry/cgd" + "@id": "https://registry.identifiers.org/registry/eco" }, { - "@id": "https://www.re3data.org/repository/r3d100010617" + "@id": "https://fairsharing.org/FAIRsharing.wvpgwn" + }, + { + "@id": "http://www.wikidata.org/entity/P3811" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECO" + }, + { + "@id": "https://registry.bio2kg.org/resource/eco" + }, + { + "@id": "https://www.obofoundry.org/ontology/eco" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "eukaryotic" + "@value": "life science" }, { - "@value": "life science" + "@value": "obo" }, { - "@value": "nucleotide" + "@value": "computational biology" }, { - "@value": "genome" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.candidagenome.org/" + "@id": "https://www.evidenceontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0007807", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/eco.owl" }, - "https://bioregistry.io/schema/#0000005": "CAL0003079", - "https://bioregistry.io/schema/#0000006": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1", - "https://bioregistry.io/schema/#0000008": "^CAL\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7628-5565" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=CAL0003079" + "@id": "http://purl.obolibrary.org/obo/ECO_0007807" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cgd" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "eco" } }, { - "@id": "https://bioregistry.io/registry/bitterdb.rec", + "@id": "https://bioregistry.io/registry/imotdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.", + "http://purl.org/dc/terms/description": "The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BitterDB Receptor" + "@value": "Database of Spatially Interacting Motifs in Proteins" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/imotdb" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC" + "@value": "interaction" }, { - "@id": "https://registry.identifiers.org/registry/bitterdb.rec" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bitterdb.agri.huji.ac.il/dbbitter.php" + "@id": "http://caps.ncbs.res.in/imotdb/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=", + "https://bioregistry.io/schema/#0000005": "53784", + "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=1" + "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=53784" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bitterdb.rec" + "@value": "imotdb" } }, { - "@id": "https://bioregistry.io/registry/hagr.gendr", + "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0001-5282-3250", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sean May" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sean@arabidopsis.org.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/gitlab", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals", + "http://purl.org/dc/terms/description": "GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Dietary Restriction Gene Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/gendr" + "@value": "GitLab" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "dietary restriction" + "@id": "https://registry.identifiers.org/registry/gitlab" }, { - "@value": "longevity" + "@id": "https://fairsharing.org/FAIRsharing.530e61" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "subject agnostic" }, { - "@value": "aging" + "@value": "software engineering" }, { - "@value": "genes" + "@value": "knowledge and information systems" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genomics.senescence.info/diet/" + "@id": "https://gitlab.com/" }, - "https://bioregistry.io/schema/#0000005": "2", - "https://bioregistry.io/schema/#0000006": "http://genomics.senescence.info/diet/details.php?id=$1", + "https://bioregistry.io/schema/#0000005": "morpheus.lab/morpheus", + "https://bioregistry.io/schema/#0000006": "https://gitlab.com/$1", + "https://bioregistry.io/schema/#0000008": "^.*/.*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://genomics.senescence.info/diet/details.php?id=", + "https://bioregistry.io/schema/#0000024": "https://gitlab.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://genomics.senescence.info/diet/details.php?id=2" + "@id": "https://gitlab.com/morpheus.lab/morpheus" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hagr.gendr" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mfomd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "gitlab" } }, { - "@id": "https://registry.identifiers.org/registry/cabri", + "@id": "https://registry.identifiers.org/registry/biosimulators", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-8424-0604", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/nmdc" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Donny Winston" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "donny@polyneme.xyz" } }, { - "@id": "https://bioregistry.io/registry/siren", + "@id": "https://bioregistry.io/registry/graingenes.reference", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods", + "http://purl.org/dc/terms/description": "A database for Triticeae and Avena references.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scientific Information Retrieval and Exchange Network" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://agroportal.lirmm.fr/ontologies/SIREN" + "@value": "GrainGenes" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.langual.org/langual_indexed_datasets.asp" + "@id": "http://wheat.pw.usda.gov" }, - "https://bioregistry.io/schema/#0000005": "F11903", - "https://bioregistry.io/schema/#0000008": "^F\\d+$", + "https://bioregistry.io/schema/#0000005": "WGS-95-1333", + "https://bioregistry.io/schema/#0000006": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9134-5404" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "SUBSET_SIREN" + "https://bioregistry.io/schema/#0000024": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=WGS-95-1333" }, "https://bioregistry.io/schema/#0000029": { - "@value": "siren" + "@value": "graingenes.reference" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc", + "@id": "https://registry.identifiers.org/registry/wormpep", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/gold", + "@id": "http://edamontology.org/data_2386", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/NBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ONS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.identifiers.org/registry/civic.mpid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/zinc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/agsd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/aphidbase.transcript", + "@id": "https://bioregistry.io/registry/dbd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information.", + "http://purl.org/dc/terms/description": "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AphidBase Transcript" + "@value": "Transcription Factor Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/aphidbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT" + "@id": "https://registry.identifiers.org/registry/dbd" }, { - "@id": "https://registry.identifiers.org/registry/aphidbase.transcript" + "@id": "https://registry.bio2kg.org/resource/dbd" + }, + { + "@id": "http://edamontology.org/data_2716" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.aphidbase.com/aphidbase" - }, - "https://bioregistry.io/schema/#0000005": "ACYPI000159", - "https://bioregistry.io/schema/#0000006": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1", - "https://bioregistry.io/schema/#0000008": "^ACYPI\\d{6}(-RA)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=ACYPI000159" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aphidbase.transcript" - } - }, - { - "@id": "https://bioregistry.io/registry/proteomicsdb.peptide", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProteomicsDB Peptide" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide" + "@value": "regulation" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.proteomicsdb.org/#peptideSearch" + "@id": "http://www.transcriptionfactor.org/" }, - "https://bioregistry.io/schema/#0000005": "53504", - "https://bioregistry.io/schema/#0000006": "https://www.proteomicsdb.org/#human/proteinDetails/$1", + "https://bioregistry.io/schema/#0000005": "0045310", + "https://bioregistry.io/schema/#0000006": "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.proteomicsdb.org/#human/proteinDetails/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dbd:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.proteomicsdb.org/#human/proteinDetails/53504" + "@id": "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:0045310+cat:DBD" }, "https://bioregistry.io/schema/#0000029": { - "@value": "proteomicsdb.peptide" + "@value": "dbd" } }, { - "@id": "http://www.ontobee.org/ontology/PHIPO", + "@id": "http://www.ontobee.org/ontology/HANCESTRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA", + "@id": "https://www.obofoundry.org/ontology/clao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/signor", + "@id": "https://bioregistry.io/registry/abcd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/signor.relation" - }, + "http://purl.org/dc/terms/description": "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Signaling Network Open Resource" + "@value": "AntiBodies Chemically Defined database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ss78t4" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD" }, { - "@id": "https://www.uniprot.org/database/DB-0206" + "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5" }, { - "@id": "https://registry.identifiers.org/registry/signor" + "@id": "https://www.uniprot.org/database/DB-0236" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "immunology" + }, + { + "@value": "molecular biology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "biology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://signor.uniroma2.it/" + "@id": "https://web.expasy.org/abcd/" }, - "https://bioregistry.io/schema/#0000005": "SIGNOR-C41", - "https://bioregistry.io/schema/#0000006": "https://signor.uniroma2.it/relation_result.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^SIGNOR\\-[A-Z]+\\d+$", + "https://bioregistry.io/schema/#0000005": "AD834", + "https://bioregistry.io/schema/#0000006": "https://web.expasy.org/abcd/ABCD_$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9528-6018" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "SIGNOR" - }, - "https://bioregistry.io/schema/#0000024": "https://signor.uniroma2.it/relation_result.php?id=", + "https://bioregistry.io/schema/#0000024": "https://web.expasy.org/abcd/ABCD_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://signor.uniroma2.it/relation_result.php?id=SIGNOR-C41" + "@id": "https://web.expasy.org/abcd/ABCD_AD834" }, "https://bioregistry.io/schema/#0000029": { - "@value": "signor" + "@value": "abcd" } }, { - "@id": "https://bioregistry.io/registry/uniprot.ptm", + "@id": "https://bioregistry.io/registry/cog.pathway", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format", + "http://purl.org/dc/terms/description": "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/cog" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Post-Translational Modification" + "@value": "COG Pathways" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biochemistry" - }, - { - "@value": "post-translational modification" - }, - { - "@value": "structural biology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/docs/ptmlist" + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/pathways" }, - "https://bioregistry.io/schema/#0000005": "PTM-0450", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/uniprot.ptm/$1", - "https://bioregistry.io/schema/#0000008": "^PTM-\\d{4}$", + "https://bioregistry.io/schema/#0000005": "NAD%20biosynthesis", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "PTM" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2265-5572" }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/uniprot.ptm/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/uniprot.ptm/PTM-0450" + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/NAD%20biosynthesis" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.ptm" + "@value": "cog.pathway" } }, { - "@id": "https://bioregistry.io/registry/ctis", + "@id": "https://cropontology.org/ontology/CO_345", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100000039", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ecn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)", + "http://purl.org/dc/terms/description": "identifier for a chemical compound per EINECS or ELINCS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clinical Trials Information System" + "@value": "EC number" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://semanticscience.org/resource/CHEMINF_000447" + }, + { + "@id": "http://www.wikidata.org/entity/P232" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://euclinicaltrials.eu/" + "@id": "https://echa.europa.eu/information-on-chemicals" }, - "https://bioregistry.io/schema/#0000005": "2023-503698-40-00", - "https://bioregistry.io/schema/#0000006": "https://euclinicaltrials.eu/app/#/view/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d+-\\d+-\\d+$", + "https://bioregistry.io/schema/#0000005": "200-003-9", + "https://bioregistry.io/schema/#0000008": "^\\d{3}-\\d{3}-\\d$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://euclinicaltrials.eu/app/#/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://euclinicaltrials.eu/app/#/view/2023-503698-40-00" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "ctis" + "@value": "ecn" } }, { - "@id": "https://orcid.org/0000-0001-8003-6860", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Samuel Friedman" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "samuel.friedman@cammlab.org" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/GENEPIO", + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ohmi", + "@id": "https://registry.bio2kg.org/resource/unists", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/img.taxon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.", + "http://purl.org/dc/terms/description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ohmi-ontology/ohmi" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Host-Microbiome Interactions" + "@value": "Integrated Microbial Genomes Taxon" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.cz9cnp" - }, - { - "@id": "http://aber-owl.net/ontology/OHMI" - }, - { - "@id": "https://www.obofoundry.org/ontology/ohmi" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon" }, { - "@id": "http://www.ontobee.org/ontology/OHMI" + "@id": "https://registry.identifiers.org/registry/img.taxon" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OHMI" + "@id": "https://registry.bio2kg.org/resource/img.taxon" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "genome" }, { - "@value": "life science" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ohmi-ontology/ohmi" - }, - "https://bioregistry.io/schema/#0000005": "0000460", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHMI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ohmi.owl" + "@id": "http://img.jgi.doe.gov/" }, + "https://bioregistry.io/schema/#0000005": "648028003", + "https://bioregistry.io/schema/#0000006": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHMI_", + "https://bioregistry.io/schema/#0000024": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OHMI_0000460" + "@id": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=648028003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ohmi" + "@value": "img.taxon" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE", + "@id": "https://www.uniprot.org/database/DB-0182", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/autdb", + "@id": "http://edamontology.org/data_2298", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/omid", + "@id": "https://bioregistry.io/registry/datacommons", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted.", + "http://purl.org/dc/terms/description": "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/datacommonsorg/website" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OpenCitations Meta Identifier" + "@value": "Data Commons" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/omid" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://opencitations.net/" + "@id": "https://datacommons.org" }, - "https://bioregistry.io/schema/#0000005": "br/0601", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/meta/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$", + "https://bioregistry.io/schema/#0000005": "Gene", + "https://bioregistry.io/schema/#0000006": "https://datacommons.org/browser/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/meta/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://datacommons.org/browser/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/oc/meta/br/0601" + "@id": "https://datacommons.org/browser/Gene" }, "https://bioregistry.io/schema/#0000029": { - "@value": "omid" + "@value": "datacommons" } }, { - "@id": "https://bioregistry.io/registry/google.scholar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites.", + "@id": "https://registry.identifiers.org/registry/antibodyregistry", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Google Scholar Researcher" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scholar.google.com/" - }, - "https://bioregistry.io/schema/#0000005": "PjrpzUIAAAAJ", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "google.scholar" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/tair", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/tair.gene" + "@id": "https://fairsharing.org/FAIRsharing.65dmtr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CDNO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CL", + "@id": "http://www.ontobee.org/ontology/OMRSE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kj3m5n", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ncim", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NDDF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.re3data.org/repository/r3d100011569", + "@id": "https://fairsharing.org/FAIRsharing.p3bzqb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/scopus.work", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "unique academic work identifier assigned in Scopus bibliographic database", + "@id": "http://www.wikidata.org/entity/P7963", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scopus Work" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1154" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.scopus.com/" - }, - "https://bioregistry.io/schema/#0000005": "2-s2.0-0030770923", - "https://bioregistry.io/schema/#0000006": "http://www.scopus.com/record/display.url?origin=inward&eid=$1", - "https://bioregistry.io/schema/#0000008": "^2-s2\\.0-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "scopus.eid" - }, - "https://bioregistry.io/schema/#0000024": "http://www.scopus.com/record/display.url?origin=inward&eid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-0030770923" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scopus.work" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/sgd.pathways", + "@id": "https://registry.identifiers.org/registry/phenolexplorer", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/vegbank", + "@id": "https://bioregistry.io/registry/rnamods", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. ", + "http://purl.org/dc/terms/description": "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VegBank" + "@value": "RNA Modification Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/vegbank" + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS" }, { - "@id": "https://www.re3data.org/repository/r3d100010153" + "@id": "https://registry.bio2kg.org/resource/rnamods" + }, + { + "@id": "https://registry.identifiers.org/registry/rnamods" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "rna" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://vegbank.org/" + "@id": "http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm" }, - "https://bioregistry.io/schema/#0000005": "VB.Ob.3736.GRSM125", - "https://bioregistry.io/schema/#0000006": "http://vegbank.org/cite/$1", - "https://bioregistry.io/schema/#0000008": "^VB\\.[A-Za-z][A-Za-z]\\..*$", + "https://bioregistry.io/schema/#0000005": "101", + "https://bioregistry.io/schema/#0000006": "http://mods.rna.albany.edu/mods/modifications/view/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://vegbank.org/cite/", + "https://bioregistry.io/schema/#0000024": "http://mods.rna.albany.edu/mods/modifications/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://vegbank.org/cite/VB.Ob.3736.GRSM125" + "@id": "http://mods.rna.albany.edu/mods/modifications/view/101" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vegbank" + "@value": "rnamods" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc", + "@id": "http://aber-owl.net/ontology/ICD10CM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/hprd", + "@id": "https://registry.identifiers.org/registry/d1id", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element", + "@id": "https://registry.identifiers.org/registry/metabolights", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GECKO", + "@id": "https://fairsharing.org/FAIRsharing.np2wfz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei", + "@id": "https://bioregistry.io/registry/tgma", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of mosquitoes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VEuPathDB-ontology/TGMA" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mosquito gross anatomy ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/TGMA" + }, + { + "@id": "http://www.ontobee.org/ontology/TGMA" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dqnfkg" + }, + { + "@id": "https://registry.bio2kg.org/resource/tgma" + }, + { + "@id": "https://www.obofoundry.org/ontology/tgma" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TGMA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "mosquito" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.vectorbase.org/ontology-browser" + }, + "https://bioregistry.io/schema/#0000005": "0000984", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TGMA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/tgma.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1635-4810" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TGMA_", + "https://bioregistry.io/schema/#0000029": { + "@value": "tgma" + } + }, + { + "@id": "https://orcid.org/0000-0002-1373-1705", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Clare Pilgrim" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cp390@cam.ac.uk" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/icdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c86b48", + "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://aber-owl.net/ontology/NBO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { @@ -26433,76 +29246,76 @@ }, "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/hmdb" + "@id": "https://bioregistry.io/registry/resid" }, { - "@id": "https://bioregistry.io/registry/drugbank" + "@id": "https://bioregistry.io/registry/pdb" }, { - "@id": "https://bioregistry.io/registry/molbase.sheffield" + "@id": "https://bioregistry.io/registry/kegg.drug" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/registry/kegg.glycan" }, { - "@id": "https://bioregistry.io/registry/metacyc.compound" + "@id": "https://bioregistry.io/registry/google.patent" }, { - "@id": "https://bioregistry.io/registry/smid" + "@id": "https://bioregistry.io/registry/chemidplus" }, { - "@id": "https://bioregistry.io/registry/kegg.drug" + "@id": "https://bioregistry.io/registry/pesticides" }, { - "@id": "https://bioregistry.io/registry/google.patent" + "@id": "https://bioregistry.io/registry/lipidmaps" }, { - "@id": "https://bioregistry.io/registry/umbbd.compound" + "@id": "https://bioregistry.io/registry/ymdb" }, { - "@id": "https://bioregistry.io/registry/lipidmaps" + "@id": "https://bioregistry.io/registry/knapsack" }, { - "@id": "https://bioregistry.io/registry/knapsack" + "@id": "https://bioregistry.io/registry/ecmdb" }, { - "@id": "https://bioregistry.io/registry/kegg.compound" + "@id": "https://bioregistry.io/registry/lincs.smallmolecule" }, { - "@id": "https://bioregistry.io/registry/webelements" + "@id": "https://bioregistry.io/registry/umbbd.compound" }, { - "@id": "https://bioregistry.io/registry/lincs.smallmolecule" + "@id": "https://bioregistry.io/registry/metacyc.compound" }, { - "@id": "https://bioregistry.io/registry/eurofir" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://bioregistry.io/registry/ymdb" + "@id": "https://bioregistry.io/registry/hmdb" }, { - "@id": "https://bioregistry.io/registry/kegg.glycan" + "@id": "https://bioregistry.io/registry/eurofir" }, { - "@id": "https://bioregistry.io/registry/resid" + "@id": "https://bioregistry.io/registry/drugbank" }, { - "@id": "https://bioregistry.io/registry/come" + "@id": "https://bioregistry.io/registry/kegg.compound" }, { - "@id": "https://bioregistry.io/registry/chemidplus" + "@id": "https://bioregistry.io/registry/webelements" }, { - "@id": "https://bioregistry.io/registry/pdb" + "@id": "https://bioregistry.io/registry/pdb-ccd" }, { - "@id": "https://bioregistry.io/registry/pesticides" + "@id": "https://bioregistry.io/registry/smid" }, { - "@id": "https://bioregistry.io/registry/ecmdb" + "@id": "https://bioregistry.io/registry/come" }, { - "@id": "https://bioregistry.io/registry/pdb-ccd" + "@id": "https://bioregistry.io/registry/molbase.sheffield" } ], "http://www.w3.org/2000/01/rdf-schema#label": { @@ -26510,1001 +29323,981 @@ } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank", + "@id": "https://registry.bio2kg.org/resource/brenda", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/rnao", + "@id": "https://bioregistry.io/registry/cst.ab", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Signaling Technology Antibody" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/cst.ab" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB" + }, + { + "@id": "https://registry.bio2kg.org/resource/cst" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pathway" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cellsignal.com/catalog/index.html" + }, + "https://bioregistry.io/schema/#0000005": "3305", + "https://bioregistry.io/schema/#0000006": "http://www.cellsignal.com/products/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cst.ab:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.cellsignal.com/products/3305.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cst.ab" } }, { - "@id": "https://www.re3data.org/repository/r3d100010421", + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/fplx", + "@id": "http://aber-owl.net/ontology/CIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/po", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ricecyc", + "@id": "http://edamontology.org/data_2392", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/COB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/prefixcommons", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project", + "http://purl.org/dc/terms/description": "A registry of life science prefxes", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rice Metabolic Pathways" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/ricecyc" + "@value": "Prefix Commons" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "pathway" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/pathway/ricecyc.html" + "@id": "https://prefixcommons.org" }, - "https://bioregistry.io/schema/#0000005": "PWY-1042", - "https://bioregistry.io/schema/#0000006": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1", + "https://bioregistry.io/schema/#0000005": "ChEBI", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/prefixcommons/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/prefixcommons/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=PWY-1042" + "@id": "https://bioregistry.io/metaregistry/prefixcommons/ChEBI" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ricecyc" + "@value": "prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/TAO", + "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/cco", + "@id": "https://www.obofoundry.org/ontology/ev", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao", + "@id": "https://bioregistry.io/registry/cas", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/re3data", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://www.re3data.org/repository/r3d100010891" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011232" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010546" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011277" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012721" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012193" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011906" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012176" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CAS Registry Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100011646" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAS" }, { - "@id": "https://www.re3data.org/repository/r3d100010616" + "@id": "http://www.wikidata.org/entity/P231" }, { - "@id": "https://www.re3data.org/repository/r3d100012074" + "@id": "https://registry.bio2kg.org/resource/cas" }, { - "@id": "https://www.re3data.org/repository/r3d100011556" + "@id": "http://edamontology.org/data_1002" }, { - "@id": "https://www.re3data.org/repository/r3d100010741" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS" }, { - "@id": "https://www.re3data.org/repository/r3d100012850" + "@id": "https://semanticscience.org/resource/CHEMINF_000446" }, { - "@id": "https://www.re3data.org/repository/r3d100012535" + "@id": "https://registry.identifiers.org/registry/cas" }, { - "@id": "https://www.re3data.org/repository/r3d100010405" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas" }, { - "@id": "https://www.re3data.org/repository/r3d100011373" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61" }, { - "@id": "https://www.re3data.org/repository/r3d100010424" - }, + "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.re3data.org/repository/r3d100010889" + "@value": "cheminformatics" }, { - "@id": "https://www.re3data.org/repository/r3d100011301" + "@value": "structure" }, { - "@id": "https://www.re3data.org/repository/r3d100010539" - }, + "@value": "chemical" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://commonchemistry.cas.org/" + }, + "https://bioregistry.io/schema/#0000005": "50-00-0", + "https://bioregistry.io/schema/#0000006": "https://commonchemistry.cas.org/detail?cas_rn=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,7}\\-\\d{2}\\-\\d$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://www.re3data.org/repository/r3d100011046" + "@value": "cas_id" }, { - "@id": "https://www.re3data.org/repository/r3d100011521" + "@value": "CASID" }, { - "@id": "https://www.re3data.org/repository/r3d100013330" + "@value": "CAS_RN" }, { - "@id": "https://www.re3data.org/repository/r3d100013051" - }, + "@value": "SECONDARY_CAS_RN" + } + ], + "https://bioregistry.io/schema/#0000024": "https://commonchemistry.cas.org/detail?cas_rn=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://commonchemistry.cas.org/detail?cas_rn=50-00-0" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cas" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/sbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0002-8600-949X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Evan Patterson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "evan@epatters.org" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/dbd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6375zh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.rclass", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://www.re3data.org/repository/r3d100014071" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://www.re3data.org/repository/r3d100012755" - }, + "@id": "https://bioregistry.io/registry/kegg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Reaction Class" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.jp/kegg/reaction/" + }, + "https://bioregistry.io/schema/#0000005": "RC00001", + "https://bioregistry.io/schema/#0000008": "^RC\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://www.re3data.org/repository/r3d100012630" + "@value": "KEGG_REACTION_CLASS" }, { - "@id": "https://www.re3data.org/repository/r3d100011285" - }, + "@value": "KEGG_RCLASS" + } + ], + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.rclass" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/signaling-gateway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-4131-735X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "John Garavelli" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "john.garavelli@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/registry/biomodels.kisao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SED-ML/KiSAO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Kinetic Simulation Algorithm Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010137" + "@id": "https://bioportal.bioontology.org/ontologies/KISAO" }, { - "@id": "https://www.re3data.org/repository/r3d100010846" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100011033" + "@id": "http://aber-owl.net/ontology/KISAO" }, { - "@id": "https://www.re3data.org/repository/r3d100013432" + "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO" }, { - "@id": "https://www.re3data.org/repository/r3d100012171" + "@id": "https://registry.identifiers.org/registry/biomodels.kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100012458" + "@id": "https://registry.bio2kg.org/resource/kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100012725" + "@id": "http://www.ontobee.org/ontology/KISAO" }, { - "@id": "https://www.re3data.org/repository/r3d100013316" + "@id": "https://www.obofoundry.org/ontology/kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100012715" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100010591" - }, + "@id": "https://fairsharing.org/FAIRsharing.jcg19w" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.re3data.org/repository/r3d100011865" + "@value": "ontology" }, { - "@id": "https://www.re3data.org/repository/r3d100010417" + "@value": "bioinformatics" }, { - "@id": "https://www.re3data.org/repository/r3d100011479" + "@value": "computer science" }, { - "@id": "https://www.re3data.org/repository/r3d100011222" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SED-ML/KiSAO" + }, + "https://bioregistry.io/schema/#0000005": "0000057", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/KISAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/kisao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2605-5080" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://www.re3data.org/repository/r3d100010228" + "@value": "biomodels.kisao" }, { - "@id": "https://www.re3data.org/repository/r3d100010468" - }, + "@value": "kisao" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/KISAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/KISAO_0000057" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biomodels.kisao" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://orcid.org/0000-0002-3583-7340", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/sphn" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Deepak Unni" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://www.re3data.org/repository/r3d100012435" + "@value": "deepak.unni3@gmail.com" }, { - "@id": "https://www.re3data.org/repository/r3d100014165" - }, + "@value": "deepak.unni3@lbl.gov" + } + ] + }, + { + "@id": "http://edamontology.org/data_2622", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6wf1zw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/go.gpi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Product Information Schema" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" + }, + "https://bioregistry.io/schema/#0000005": "db-object-id", + "https://bioregistry.io/schema/#0000006": "http://geneontology.org/docs/gene-product-information-gpi-format/#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://geneontology.org/docs/gene-product-information-gpi-format/#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "go.gpi" + } + }, + { + "@id": "https://bioregistry.io/registry/niaest", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIA Mouse cDNA Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100011213" + "@id": "https://fairsharing.org/FAIRsharing.xwqg9h" }, { - "@id": "https://www.re3data.org/repository/r3d100010266" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST" }, { - "@id": "https://www.re3data.org/repository/r3d100012362" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest" }, { - "@id": "https://www.re3data.org/repository/r3d100012647" + "@id": "https://registry.identifiers.org/registry/niaest" }, { - "@id": "https://www.re3data.org/repository/r3d100012688" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST" }, { - "@id": "https://www.re3data.org/repository/r3d100012657" - }, + "@id": "https://registry.bio2kg.org/resource/niaest" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.re3data.org/repository/r3d100011166" + "@value": "dna" }, { - "@id": "https://www.re3data.org/repository/r3d100013060" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://lgsun.grc.nia.nih.gov/cDNA/" + }, + "https://bioregistry.io/schema/#0000005": "J0705A10", + "https://bioregistry.io/schema/#0000006": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1", + "https://bioregistry.io/schema/#0000008": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4054-1827" + }, + "https://bioregistry.io/schema/#0000024": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=J0705A10" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "niaest" + } + }, + { + "@id": "https://bioregistry.io/registry/tred", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Transcriptional Regulatory Element Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/tred" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.re3data.org/repository/r3d100012863" + "@value": "regulation" }, { - "@id": "https://www.re3data.org/repository/r3d100010527" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012828" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013293" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012902" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012321" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010652" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010906" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010586" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010219" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010880" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011330" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012731" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010129" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011316" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011052" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010585" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012344" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010671" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012311" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012733" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013413" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013547" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012189" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010785" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010549" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011527" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012901" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010617" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012627" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011564" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010350" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012015" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012517" - }, - { - "@id": "https://www.re3data.org/repository/r3d100014113" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012429" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011478" - }, - { - "@id": "https://www.re3data.org/repository/r3d100000023" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012265" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010414" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010245" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010648" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011049" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011280" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011196" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012461" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010180" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012457" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010153" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011331" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013361" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011569" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010604" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010861" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011519" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012078" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010419" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010222" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010415" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011198" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010421" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013314" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013715" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010910" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010775" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012197" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013650" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010978" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012041" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011663" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013478" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012315" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010912" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010672" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013295" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013816" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011931" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010205" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012690" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013263" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012388" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010798" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010142" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012820" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010283" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010626" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013331" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012273" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010931" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012603" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011242" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010170" - }, - { - "@id": "https://www.re3data.org/repository/r3d100000039" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010921" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010375" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010285" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010544" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010776" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011195" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010528" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013638" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010676" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012928" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010197" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010566" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010562" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012152" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010605" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011496" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012575" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012385" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011294" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012702" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010372" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010804" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013668" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010795" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010670" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010666" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010191" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012705" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010650" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010975" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010774" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011936" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010561" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010669" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012626" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010229" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010808" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012629" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010803" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011518" + "@value": "dna" } ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rulai.cshl.edu/TRED" + }, + "https://bioregistry.io/schema/#0000005": "21552", + "https://bioregistry.io/schema/#0000006": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=21552" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tred" + } + }, + { + "@id": "https://bioregistry.io/registry/umls.aui", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Registry of Research Data Repositories" + "@value": "Unified Medical Language System Atomic Unique Identifier" }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.re3data.org" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "r3d100014165" + "@id": "https://www.nlm.nih.gov/research/umls" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://www.re3data.org/repository/$1" + "https://bioregistry.io/schema/#0000005": "A0118748", + "https://bioregistry.io/schema/#0000008": "^A\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "UMLS_ICD9CM_2005_AUI" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4221-7956" + "https://bioregistry.io/schema/#0000029": { + "@value": "umls.aui" } }, { - "@id": "https://www.uniprot.org/database/DB-0135", + "@id": "https://registry.bio2kg.org/resource/neuromorpho", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/CMO", + "@id": "https://registry.identifiers.org/registry/fb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_1004", + "@id": "https://fairsharing.org/FAIRsharing.t3nprm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/PO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://edamontology.org/data_2346", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_322", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6hna78", + "@id": "https://www.re3data.org/repository/r3d100011331", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/atc", + "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0214", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biosample", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/nemo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.", + "@id": "https://www.obofoundry.org/ontology/epo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Neuroscience Multi-Omic BRAIN Initiative Data" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/nemo" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nemoarchive.org" - }, - "https://bioregistry.io/schema/#0000005": "smp-m3w9hbe", - "https://bioregistry.io/schema/#0000006": "https://assets.nemoarchive.org/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]{3}-[a-km-z0-9]{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://assets.nemoarchive.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://assets.nemoarchive.org/smp-m3w9hbe" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nemo" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/idoden", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for dengue fever.", + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/CHEMROF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0001-5208-3432", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dengue Fever Ontology" + "@value": "Nicole Vasilevsky" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" - }, - { - "@id": "http://aber-owl.net/ontology/IDODEN" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.askzq4" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/mbox": [ { - "@value": "medicine" + "@value": "nicole@tislab.org" }, { - "@value": "ontology" + "@value": "vasilevs@ohsu.edu" } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" - }, - "https://bioregistry.io/schema/#0000005": "0003463", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/IDODEN_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/IDODEN/6/idoden.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0719-3485" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/IDODEN_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/IDODEN_0003463" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "idoden" - } + ] }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_350", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://orcid.org/0000-0002-3458-4839", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Trish Whetzel" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "plwhetzel@gmail.com" + "@id": "http://aber-owl.net/ontology/CCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb", + "@id": "https://registry.bio2kg.org/resource/doi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/miaa", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimal Information About Anatomy ontology" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "miaa" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10", + "@id": "https://fairsharing.org/FAIRsharing.g7t2hv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/peptideatlas", + "@id": "https://bioregistry.io/registry/geogeo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.", + "http://purl.org/dc/terms/description": "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\".", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ufbmi/geographical-entity-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PeptideAtlas" + "@value": "Geographical Entity Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2626" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS" + "@id": "https://registry.identifiers.org/registry/geogeo" }, { - "@id": "https://www.re3data.org/repository/r3d100010889" + "@id": "https://www.obofoundry.org/ontology/geo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas" + "@id": "https://bioportal.bioontology.org/ontologies/GEO" }, { - "@id": "https://registry.bio2kg.org/resource/peptideatlas" + "@id": "https://fairsharing.org/FAIRsharing.27rndz" }, { - "@id": "https://www.uniprot.org/database/DB-0071" + "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" }, { - "@id": "https://registry.identifiers.org/registry/peptideatlas" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo" }, { - "@id": "https://fairsharing.org/FAIRsharing.dvyrsz" + "@id": "http://www.ontobee.org/ontology/GEO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "mass spectrometry" + "@value": "ontology" }, { - "@value": "protein" + "@value": "human geography" }, { - "@value": "proteomics" + "@value": "obo" }, { - "@value": "structure" + "@value": "physical geography" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.peptideatlas.org/" + "@id": "https://github.com/ufbmi/geographical-entity-ontology/wiki" + }, + "https://bioregistry.io/schema/#0000005": "000000021", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{9}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/geo.owl" }, - "https://bioregistry.io/schema/#0000005": "PAp00000009", - "https://bioregistry.io/schema/#0000006": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1", - "https://bioregistry.io/schema/#0000008": "^PAp[0-9]{8}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8732-0928" + "@id": "https://orcid.org/0000-0002-9881-1017" }, - "https://bioregistry.io/schema/#0000024": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GEO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=PAp00000009" + "@id": "http://purl.obolibrary.org/obo/GEO_000000021" }, "https://bioregistry.io/schema/#0000029": { - "@value": "peptideatlas" + "@value": "geogeo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/one", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://www.ontobee.org/ontology/MA", + "@id": "https://bioregistry.io/registry/horizon_discovery", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Horizon Discovery cell line collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://horizondiscovery.com/" + }, + "https://bioregistry.io/schema/#0000005": "HD+118-001", + "https://bioregistry.io/schema/#0000006": "https://horizondiscovery.com/en/search?searchterm=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://horizondiscovery.com/en/search?searchterm=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://horizondiscovery.com/en/search?searchterm=HD+118-001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "horizon_discovery" } }, { - "@id": "https://registry.bio2kg.org/resource/lgicdb", + "@id": "https://bioregistry.io/registry/ocid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology Concept Identifiers" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ocid" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ontochem.com/" + }, + "https://bioregistry.io/schema/#0000005": "190000021540", + "https://bioregistry.io/schema/#0000006": "https://ocid.ontochem.com/prefname?ocid=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://ocid.ontochem.com/prefname?ocid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ocid.ontochem.com/prefname?ocid=190000021540" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ocid" } }, { - "@id": "https://bioregistry.io/registry/decipher", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/phosphopoint.kinase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms", + "http://purl.org/dc/terms/description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DECIPHER CNV Syndromes" + "@value": "PhosphoPoint Kinase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x" + "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://kinase.bioinformatics.tw/" + }, + "https://bioregistry.io/schema/#0000005": "AURKA", + "https://bioregistry.io/schema/#0000006": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/phosphopoint.kinase:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "phosphopoint.kinase" + } + }, + { + "@id": "https://bioregistry.io/registry/ncbi.genome", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Genome" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biomedical science" + "@id": "https://www.re3data.org/repository/r3d100010785" }, { - "@value": "life science" + "@id": "http://edamontology.org/data_2787" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.deciphergenomics.org/" + "@id": "https://www.ncbi.nlm.nih.gov/genome" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://www.deciphergenomics.org/syndrome/$1", + "https://bioregistry.io/schema/#0000005": "51", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/genome/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.deciphergenomics.org/syndrome/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/genome/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.deciphergenomics.org/syndrome/1" + "@id": "https://www.ncbi.nlm.nih.gov/genome/51" }, "https://bioregistry.io/schema/#0000029": { - "@value": "decipher" + "@value": "ncbi.genome" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw", + "@id": "http://www.wikidata.org/entity/P938", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256", + "@id": "https://orcid.org/0000-0002-1780-5230", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ada Hamosh" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ahamosh@jhmi.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/scop", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ogsf", + "@id": "https://bioregistry.io/registry/mcro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process.", + "http://purl.org/dc/terms/description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/linikujp/OGSF" + "@id": "https://github.com/UTHealth-Ontology/MCRO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Genetic Susceptibility Factor" + "@value": "Model Card Report Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/OGSF" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.egv2cz" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OGSF" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf" + "@id": "http://aber-owl.net/ontology/MCRO" }, { - "@id": "http://www.ontobee.org/ontology/OGSF" + "@id": "https://www.obofoundry.org/ontology/mcro" }, { - "@id": "https://www.obofoundry.org/ontology/ogsf" + "@id": "http://www.ontobee.org/ontology/MCRO" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -27513,9868 +30306,7720 @@ }, { "@value": "ontology" - }, - { - "@value": "epidemiology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "genetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/linikujp/OGSF" + "@id": "https://github.com/UTHealth-Ontology/MCRO" }, - "https://bioregistry.io/schema/#0000005": "0000025", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGSF_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MCRO_$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ogsf.owl" + "@id": "http://purl.obolibrary.org/obo/mcro.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/swo" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5379-5359" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGSF_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OGSF_0000025" + "@id": "https://orcid.org/0000-0003-4333-1857" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MCRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "ogsf" + "@value": "mcro" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB", + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT", + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/hpscreg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl", + "@id": "https://bioregistry.io/registry/bcrc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BCRC Strain Collection Catalog" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "cell lines" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://catalog.bcrc.firdi.org.tw" + }, + "https://bioregistry.io/schema/#0000005": "60316", + "https://bioregistry.io/schema/#0000006": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=60316" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bcrc" } }, { - "@id": "http://www.ontobee.org/ontology/FMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://orcid.org/0000-0003-4494-839X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Xeni Kechagioglou" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "xeni.kechagioglou@lifewatch.eu" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM", + "@id": "https://bioregistry.io/registry/mesh.2013", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MeSH 2013" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013" + }, + { + "@id": "https://registry.identifiers.org/registry/mesh.2013" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.nlm.nih.gov/mesh/" + }, + "https://bioregistry.io/schema/#0000005": "17165", + "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/mesh" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mesh.2013:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=17165&view=expanded" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mesh.2013" } }, { - "@id": "https://bioregistry.io/registry/epio", + "@id": "https://bioregistry.io/registry/omp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A application driven Epilepsy Ontology with official terms from the ILAE.", + "http://purl.org/dc/terms/description": "An ontology of phenotypes covering microbes", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SCAI-BIO/EpilepsyOntology" + "@id": "https://github.com/microbialphenotypes/OMP-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Epilepsy Ontology" + "@value": "Ontology of Microbial Phenotypes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/EPIO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp" }, { - "@id": "http://www.ontobee.org/ontology/EPIO" + "@id": "http://www.ontobee.org/ontology/OMP" }, { - "@id": "https://www.obofoundry.org/ontology/epio" + "@id": "https://www.obofoundry.org/ontology/omp" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EPIO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMP" + }, + { + "@id": "http://aber-owl.net/ontology/OMP" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cc3f2x" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OMP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "microbiology" }, { "@value": "ontology" + }, + { + "@value": "obo" + }, + { + "@value": "data mining" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SCAI-BIO/EpilepsyOntology" + "@id": "http://microbialphenotypes.org" }, - "https://bioregistry.io/schema/#0000005": "0000011", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EPIO_$1", + "https://bioregistry.io/schema/#0000005": "0005067", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMP_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/epio.owl" + "@id": "http://purl.obolibrary.org/obo/omp.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/bfo" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mco" }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9896-3531" + "@id": "https://orcid.org/0000-0001-9016-2684" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EPIO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMP_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/EPIO_0000011" + "@id": "http://purl.obolibrary.org/obo/OMP_0005067" }, "https://bioregistry.io/schema/#0000029": { - "@value": "epio" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "omp" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/NIFSTD", + "@id": "https://bioregistry.io/registry/bgee.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bgee family" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY" + }, + { + "@id": "https://registry.identifiers.org/registry/bgee.family" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bgee.unil.ch/bgee/bgee" + }, + "https://bioregistry.io/schema/#0000005": "ENSFM00500000270089", + "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1", + "https://bioregistry.io/schema/#0000008": "^(ENSFM|ENSGTV:)\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=ENSFM00500000270089" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bgee.family" } }, { - "@id": "https://bioregistry.io/registry/sssom", + "@id": "https://bioregistry.io/registry/nsf.award", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace.", + "http://purl.org/dc/terms/description": "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/mapping-commons/sssom" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simple Standard for Sharing Ontological Mappings" + "@value": "National Science Foundation Award" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org/sssom" + "@id": "https://www.nsf.gov/awards/about.jsp" }, - "https://bioregistry.io/schema/#0000005": "mapping_justification", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/sssom/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_]+$", + "https://bioregistry.io/schema/#0000005": "1458400", + "https://bioregistry.io/schema/#0000006": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7356-1779" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/sssom/", + "https://bioregistry.io/schema/#0000024": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/sssom/mapping_justification" + "@id": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sssom" + "@value": "nsf.award" } }, { - "@id": "https://www.uniprot.org/database/DB-0089", + "@id": "https://bioregistry.io/registry/dragondb", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/dragondb.dna" + }, + { + "@id": "https://bioregistry.io/registry/dragondb.protein" + }, + { + "@id": "https://bioregistry.io/registry/dragondb.allele" + }, + { + "@id": "https://bioregistry.io/registry/dragondb.locus" + } + ] + }, + { + "@id": "https://registry.identifiers.org/registry/fairsharing", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.reaction", + "@id": "https://bioregistry.io/metaregistry/biocontext/TAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/qtldb", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://www.obofoundry.org/ontology/ddanat", + "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/swo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.wikidata.org/entity/P5458", + "@id": "https://fairsharing.org/FAIRsharing.nx58jg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/phosphopoint.protein", + "@id": "http://www.ontobee.org/ontology/ICEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN", + "@id": "https://www.obofoundry.org/ontology/mfoem", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/co_324", + "@id": "https://fairsharing.org/FAIRsharing.nbfwwv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-6062-7492", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Support Email" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "support@ccdc.cam.ac.uk" + } + }, + { + "@id": "https://orcid.org/0000-0002-7073-9172", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Osumi-Sutherland" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "davidos@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/clinvar.record", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sorghum TDv5 - Oct 2019", + "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/clinvar" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ClinVar Record" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD" + }, + { + "@id": "https://registry.identifiers.org/registry/clinvar.record" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" + }, + "https://bioregistry.io/schema/#0000005": "RCV000033555.3", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/clinvar/$1", + "https://bioregistry.io/schema/#0000008": "^RCV\\d+(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/clinvar/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ncbi.nlm.nih.gov/clinvar/RCV000033555.3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "clinvar.record" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3841", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hamap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0003-0719-3485", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Elvira Mitraka" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "elvira@imbb.forth.gr" + } + }, + { + "@id": "https://bioregistry.io/registry/cellimage", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sorghum ontology" + "@value": "Cell Image Library" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_324" + "@id": "https://registry.identifiers.org/registry/cellimage" }, { - "@id": "https://fairsharing.org/FAIRsharing.dxx0c" + "@id": "https://registry.bio2kg.org/resource/cellimage" }, { - "@id": "https://cropontology.org/ontology/CO_324" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324" + "@id": "https://www.re3data.org/repository/r3d100000023" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8t18te" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" + "@value": "life science" }, { - "@value": "ontology" + "@value": "cell biology" }, { - "@value": "botany" + "@value": "image" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_324/Sorghum" - }, - "https://bioregistry.io/schema/#0000005": "0000111", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_324:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_324/Sorghum/owl" + "@id": "http://cellimagelibrary.org/" }, + "https://bioregistry.io/schema/#0000005": "24801", + "https://bioregistry.io/schema/#0000006": "http://cellimagelibrary.org/images/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N9ff3b0b9e9be44da9da4229138535296" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_324:", + "https://bioregistry.io/schema/#0000024": "http://cellimagelibrary.org/images/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_324:0000111" + "@id": "http://cellimagelibrary.org/images/24801" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_324" + "@value": "cellimage" } }, { - "@id": "_:N9ff3b0b9e9be44da9da4229138535296", + "@id": "https://bioregistry.io/registry/scomp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Selventa legacy complex namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" + "@value": "Selventa Complexes" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "selventa" + }, + { + "@value": "bel" + }, + { + "@value": "protein complexes" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-named-complexes.txt" + }, + "https://bioregistry.io/schema/#0000005": "C0001", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/scomp/$1", + "https://bioregistry.io/schema/#0000008": "^C\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/scomp/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/scomp/C0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scomp" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qje0v8", + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb", + "@id": "https://bioregistry.io/registry/yeastintron", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yeast Intron Database v4.3" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON" + }, + { + "@id": "https://registry.identifiers.org/registry/yeastintron" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://intron.ucsc.edu/yeast4.3/" + }, + "https://bioregistry.io/schema/#0000005": "SNR17A", + "https://bioregistry.io/schema/#0000006": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=SNR17A" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "yeastintron" } }, { - "@id": "https://registry.identifiers.org/registry/drugbankv4.target", + "@id": "https://bioregistry.io/collection/0000010", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/pharmgkb.drug" + }, + { + "@id": "https://bioregistry.io/registry/pmc" + }, + { + "@id": "https://bioregistry.io/registry/panther.pathway" + }, + { + "@id": "https://bioregistry.io/registry/zfin" + }, + { + "@id": "https://bioregistry.io/registry/pharmgkb.gene" + }, + { + "@id": "https://bioregistry.io/registry/brenda" + }, + { + "@id": "https://bioregistry.io/registry/pharmgkb.pathways" + }, + { + "@id": "https://bioregistry.io/registry/orphanet.ordo" + }, + { + "@id": "https://bioregistry.io/registry/gbif" + }, + { + "@id": "https://bioregistry.io/registry/hgnc" + }, + { + "@id": "https://bioregistry.io/registry/sgd" + }, + { + "@id": "https://bioregistry.io/registry/pdb" + }, + { + "@id": "https://bioregistry.io/registry/interpro" + }, + { + "@id": "https://bioregistry.io/registry/px" + }, + { + "@id": "https://bioregistry.io/registry/mgi" + }, + { + "@id": "https://bioregistry.io/registry/panther.family" + }, + { + "@id": "https://bioregistry.io/registry/rhea" + }, + { + "@id": "https://bioregistry.io/registry/reactome" + }, + { + "@id": "https://bioregistry.io/registry/ucsc" + }, + { + "@id": "https://bioregistry.io/registry/ena.embl" + }, + { + "@id": "https://bioregistry.io/registry/agrkb" + }, + { + "@id": "https://bioregistry.io/registry/civic.tid" + }, + { + "@id": "https://bioregistry.io/registry/civic.vid" + }, + { + "@id": "https://bioregistry.io/registry/civic.sid" + }, + { + "@id": "https://bioregistry.io/registry/pharmgkb.disease" + }, + { + "@id": "https://bioregistry.io/registry/pombase" + }, + { + "@id": "https://bioregistry.io/registry/bacdive" + }, + { + "@id": "https://bioregistry.io/registry/eupath" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/ecocyc" + }, + { + "@id": "https://bioregistry.io/registry/panther.pthcmp" + }, + { + "@id": "https://bioregistry.io/registry/chembl" + }, + { + "@id": "https://bioregistry.io/registry/brenda.ligand" + }, + { + "@id": "https://bioregistry.io/registry/civic.gid" + }, + { + "@id": "https://bioregistry.io/registry/rgd" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/panther.node" + }, + { + "@id": "https://bioregistry.io/registry/ensembl" + }, + { + "@id": "https://bioregistry.io/registry/brenda.ligandgroup" + }, + { + "@id": "https://bioregistry.io/registry/civic.eid" + }, + { + "@id": "https://bioregistry.io/registry/civic.did" + }, + { + "@id": "https://bioregistry.io/registry/flybase" + }, + { + "@id": "https://bioregistry.io/registry/wormbase" + }, + { + "@id": "https://bioregistry.io/registry/civic.aid" + }, + { + "@id": "https://bioregistry.io/registry/uniprot" + }, + { + "@id": "https://bioregistry.io/registry/orphanet" + }, + { + "@id": "https://bioregistry.io/registry/gnomad" + }, + { + "@id": "https://bioregistry.io/registry/bto" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Global Biodata Coalition - Global Core Biodata Resources" + } + }, + { + "@id": "http://www.wikidata.org/entity/P7001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ligandbook", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain", + "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/bind", + "@id": "https://bioregistry.io/registry/gramene.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Accession number of an entry from the BIND database.", + "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BIND accession number" + "@value": "Gramene protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIND" - }, - { - "@id": "http://edamontology.org/data_1129" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein" }, { - "@id": "https://registry.bio2kg.org/resource/bind" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathway" + "@id": "https://registry.identifiers.org/registry/gramene.protein" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN" }, { - "@value": "small molecule" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bind.ca" + "@id": "http://www.gramene.org/" }, - "https://bioregistry.io/schema/#0000005": "98346", - "https://bioregistry.io/schema/#0000006": "http://www.bind.ca/Action?identifier=bindid&idsearch=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://www.bind.ca/Action?identifier=bindid&idsearch=", + "https://bioregistry.io/schema/#0000005": "78073", + "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/protein/protein_search?protein_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "GR_PROTEIN" + }, + "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/protein/protein_search?protein_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bind.ca/Action?identifier=bindid&idsearch=98346" + "@id": "http://www.gramene.org/db/protein/protein_search?protein_id=78073" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bind" + "@value": "gramene.protein" } }, { - "@id": "https://registry.identifiers.org/registry/aspgd.locus", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://registry.bio2kg.org/resource/tcdb", + "@id": "https://fairsharing.org/FAIRsharing.sjf113", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug", + "@id": "https://www.obofoundry.org/ontology/tto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/ZFS", + "@id": "https://registry.identifiers.org/registry/reactome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/asap", + "@id": "https://bioregistry.io/registry/toxoplasma", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ToxoDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/toxoplasma" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://toxodb.org/toxo/" + }, + "https://bioregistry.io/schema/#0000005": "TGME49_053730", + "https://bioregistry.io/schema/#0000006": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TGME49_053730" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "toxoplasma" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIO", + "@id": "https://fairsharing.org/FAIRsharing.a14123", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/co_341", + "@id": "https://bioregistry.io/registry/fideo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015", + "http://purl.org/dc/terms/description": "Food-Drug interactions automatically extracted from scientific literature", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://gitub.u-bordeaux.fr/erias/fideo" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pigeonpea ontology" + "@value": "Food Interactions with Drugs Evidence Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_341" + "@id": "http://aber-owl.net/ontology/FIDEO" }, { - "@id": "https://fairsharing.org/FAIRsharing.ehe3yp" + "@id": "https://www.obofoundry.org/ontology/fideo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341" + "@id": "https://bioportal.bioontology.org/ontologies/FIDEO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_341" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo" + }, + { + "@id": "http://www.ontobee.org/ontology/FIDEO" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "agriculture" - }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_341/Pigeonpea" + "@id": "https://gitub.u-bordeaux.fr/erias/fideo" }, - "https://bioregistry.io/schema/#0000005": "0000140", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_341:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "00000021", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FIDEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_341/Pigeonpea/owl" + "@id": "http://purl.obolibrary.org/obo/fideo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6020-5919" + "@id": "https://orcid.org/0000-0001-9921-8234" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_341:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FIDEO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_341:0000140" + "@id": "http://purl.obolibrary.org/obo/FIDEO_00000021" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_341" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010670", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://www.ontobee.org/ontology/AEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "fideo" } }, { - "@id": "https://bioregistry.io/registry/co_345", + "@id": "https://bioregistry.io/registry/clyh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Brachiaria (forages) ontology TD v5 - Version Oct 2016", + "http://purl.org/dc/terms/description": "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/EBISPOT/clyh_ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brachiaria ontology" + "@value": "Clytia hemisphaerica Development and Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_345" + "@id": "http://www.ontobee.org/ontology/CLYH" }, { - "@id": "https://fairsharing.org/FAIRsharing.9e9683" + "@id": "http://aber-owl.net/ontology/CLYH" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345" + "@id": "https://www.obofoundry.org/ontology/clyh" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_345" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CLYH" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "agriculture" - }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_345/Brachiaria" + "@id": "https://github.com/EBISPOT/clyh_ontology" }, - "https://bioregistry.io/schema/#0000005": "0000127", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_345:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "1000100", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLYH_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_345/Brachiaria/owl" + "@id": "http://purl.obolibrary.org/obo/clyh.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8d54b1a6872b486aa13afa60bc27dd39" + "@id": "https://orcid.org/0000-0002-7440-0467" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_345:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLYH_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_345:0000127" + "@id": "http://purl.obolibrary.org/obo/CLYH_1000100" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_345" + "@value": "clyh" } }, { - "@id": "_:N8d54b1a6872b486aa13afa60bc27dd39", + "@id": "https://orcid.org/0000-0002-3375-1738", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" + "@value": "Michael K. Gilson" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "http://aber-owl.net/ontology/SEPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "mgilson@health.ucsd.edu" } }, { - "@id": "http://aber-owl.net/ontology/PROPREO", + "@id": "http://www.wikidata.org/entity/P2892", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://aber-owl.net/ontology/CCO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/agilent.probe", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-6982-4660", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Agilent Probe" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "transcriptomics" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-2320/A-MEXP-2320.adf.txt" + "@value": "Alex Bateman" }, - "https://bioregistry.io/schema/#0000005": "A_24_P98555", - "https://bioregistry.io/schema/#0000008": "^A_\\d+_.+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "agilent.probe" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "agb@ebi.ac.uk" } }, { - "@id": "https://bioregistry.io/registry/jcggdb", + "@id": "https://bioregistry.io/registry/eolife", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.", + "http://purl.org/dc/terms/description": "A collaborative project intended to create an encyclopedia documenting all living species known to science", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Japan Consortium for Glycobiology and Glycotechnology Database" + "@value": "Encyclopedia of Life" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/jcggdb" + "@id": "https://fairsharing.org/FAIRsharing.3J6NYn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB" + "@id": "https://www.re3data.org/repository/r3d100010229" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb" + "@id": "http://www.wikidata.org/entity/P830" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biodiversity" + }, + { + "@value": "taxonomy" + }, + { + "@value": "biology" + }, + { + "@value": "ecology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://jcggdb.jp/index_en.html" + "@id": "https://eol.org" }, - "https://bioregistry.io/schema/#0000005": "JCGG-STR008690", - "https://bioregistry.io/schema/#0000006": "http://jcggdb.jp/idb/jcggdb/$1", - "https://bioregistry.io/schema/#0000008": "^JCGG-STR\\d{6}$", + "https://bioregistry.io/schema/#0000005": "1044544", + "https://bioregistry.io/schema/#0000006": "https://eol.org/pages/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://jcggdb.jp/idb/jcggdb/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9943-2342" + }, + "https://bioregistry.io/schema/#0000024": "https://eol.org/pages/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://jcggdb.jp/idb/jcggdb/JCGG-STR008690" + "@id": "https://eol.org/pages/1044544" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jcggdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "eolife" } }, { - "@id": "http://www.wikidata.org/entity/P4550", + "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.environ", + "@id": "https://fairsharing.org/FAIRsharing.m3jtpg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/cio", + "@id": "http://agroportal.lirmm.fr/ontologies/SO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://edamontology.org/data_2309", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/PCO", + "@id": "https://bioregistry.io/registry/supfam", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://orcid.org/0000-0003-4849-628X", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jean-Luc Jannink" + "@value": "SUPERFAMILY" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ry1ezg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SCDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://www.wikidata.org/entity/P591", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2576", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/superfamily" + }, + { + "@id": "https://registry.identifiers.org/registry/supfam" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM" + }, + { + "@id": "https://www.uniprot.org/database/DB-0155" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "classification" + }, + { + "@value": "protein" + }, + { + "@value": "structure" + }, + { + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://supfam.org/SUPERFAMILY/" + }, + "https://bioregistry.io/schema/#0000005": "SSF57615", + "https://bioregistry.io/schema/#0000006": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF57615" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "supfam" } }, { - "@id": "http://aber-owl.net/ontology/ICO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/flowrepository", + "@id": "https://bioregistry.io/registry/hcpcs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.", + "http://purl.org/dc/terms/description": "HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlowRepository" + "@value": "Healthcare Common Procedure Coding System" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository" + "@id": "https://bioportal.bioontology.org/ontologies/HCPCS" }, { - "@id": "https://registry.identifiers.org/registry/flowrepository" + "@id": "https://fairsharing.org/FAIRsharing.x81wz8" }, { - "@id": "https://www.re3data.org/repository/r3d100011280" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS" }, { - "@id": "https://fairsharing.org/FAIRsharing.veg2d6" + "@id": "http://aber-owl.net/ontology/HCPCS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "business administration" }, { - "@value": "cell biology" + "@value": "ontology" }, { - "@value": "biology" + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://flowrepository.org/" + "@id": "https://www.cms.gov/Medicare/Coding/MedHCPCSGenInfo" }, - "https://bioregistry.io/schema/#0000005": "FR-FCM-ZYGW", - "https://bioregistry.io/schema/#0000006": "https://flowrepository.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^FR\\-FCM\\-\\w{4}$", + "https://bioregistry.io/schema/#0000005": "G8944", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/HCPCS/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9765-2990" + "@id": "_:N2370bb67565241488d5b2870551a9eb7" }, - "https://bioregistry.io/schema/#0000024": "https://flowrepository.org/id/", + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/HCPCS/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://flowrepository.org/id/FR-FCM-ZYGW" + "@id": "http://purl.bioontology.org/ontology/HCPCS/G8944" }, "https://bioregistry.io/schema/#0000029": { - "@value": "flowrepository" + "@value": "hcpcs" } }, { - "@id": "https://orcid.org/0000-0001-9254-7318", + "@id": "_:N2370bb67565241488d5b2870551a9eb7", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rutger Vos" + "@value": "Cynthia Hake" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rutgeraldo@gmail.com" + "@value": "Cynthia.Hake@cms.hhs.gov" } }, { - "@id": "http://edamontology.org/data_1146", + "@id": "https://registry.bio2kg.org/resource/unipathway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://edamontology.org/data_2616", + "@id": "http://aber-owl.net/ontology/DDPHENO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM", + "@id": "http://edamontology.org/data_1027", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.obofoundry.org/ontology/mamo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://orcid.org/0000-0003-2338-8872", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fernanda Farinelli" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "fernanda.farinelli@gmail.com" } }, { - "@id": "https://bioregistry.io/registry/conference", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-2801-0767", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Conference Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.scholarlydata.org/ontology/doc/" - }, - "https://bioregistry.io/schema/#0000005": "isDocumentRelatedTo", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#isDocumentRelatedTo" + "@value": "Dalia Alghamdi" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "conference" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dal.alghamdi92@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider", + "@id": "https://bioportal.bioontology.org/ontologies/GECKO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.obofoundry.org/ontology/fao", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.cwx04e", + "@id": "http://aber-owl.net/ontology/BCI-O", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RETO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, + "@id": "https://bioregistry.io/registry/nlx.chem", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXCHEM covers chemicals. Most classes are also in ChEBI.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Chemical" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "chemistry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "90801", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXCHEM" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_chem_90801" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.chem" + } + }, { - "@id": "https://registry.identifiers.org/registry/oma.protein", + "@id": "https://registry.bio2kg.org/resource/reactome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.czzmpg", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/po", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/drugbank", + "@id": "https://cropontology.org/ontology/CO_347", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://registry.identifiers.org/registry/pathwaycommons", + "@id": "https://bartoc.org/en/node/581", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/erm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/collection/0000005", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Registry of Materials" + "http://purl.org/dc/elements/1.1/description": { + "@value": "This collection contains various brain atlases from the Allen Institute." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.identifiers.org/registry/erm" + "@id": "https://bioregistry.io/registry/dmba" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm" + "@id": "https://bioregistry.io/registry/mba" }, { - "@id": "https://fairsharing.org/FAIRsharing.c26a4e" + "@id": "https://bioregistry.io/registry/hba" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000569" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "nanotechnology" + "@id": "https://bioregistry.io/registry/dhba" }, { - "@value": "materials informatics" + "@id": "https://bioregistry.io/registry/pba" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nanocommons.github.io/identifiers/" - }, - "https://bioregistry.io/schema/#0000005": "ERM00000044", - "https://bioregistry.io/schema/#0000006": "https://nanocommons.github.io/identifiers/registry#$1", - "https://bioregistry.io/schema/#0000008": "^ERM[0-9]{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" - }, - "https://bioregistry.io/schema/#0000024": "https://nanocommons.github.io/identifiers/registry#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://nanocommons.github.io/identifiers/registry#ERM00000044" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "erm" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Allen Institute Ontologies" } }, { - "@id": "http://www.ontobee.org/ontology/CHEMINF", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/metatlas.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A subspace of Metabolic Atlas for reactions.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/metatlas" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolic Atlas Reaction" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "reactions" - }, - { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metabolicatlas.org" - }, - "https://bioregistry.io/schema/#0000005": "MAR11851", - "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", - "https://bioregistry.io/schema/#0000008": "^MAR\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7753-9042" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAR11851" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "metatlas.reaction" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/refseq", + "@id": "http://edamontology.org/data_1179", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/biocatalogue.service", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.", + "@id": "http://aber-owl.net/ontology/GFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioCatalogue Service" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/biocatalogue.service" - }, - { - "@id": "https://registry.bio2kg.org/resource/biocatalogue" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.biocatalogue.org/" - }, - "https://bioregistry.io/schema/#0000005": "614", - "https://bioregistry.io/schema/#0000006": "https://www.biocatalogue.org/services/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.biocatalogue.org/services/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.biocatalogue.org/services/614" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biocatalogue.service" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/VO", + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study", + "@id": "http://aber-owl.net/ontology/AISM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE", + "@id": "https://registry.bio2kg.org/resource/beetlebase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/xao", + "@id": "https://bioregistry.io/registry/antibodyregistry", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.", + "http://purl.org/dc/terms/description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/xenopus-anatomy/xao" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Xenopus Anatomy Ontology" + "@value": "Antibody Registry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/581" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/XAO" - }, - { - "@id": "http://www.ontobee.org/ontology/XAO" - }, - { - "@id": "http://www.wikidata.org/entity/P4495" - }, - { - "@id": "https://www.obofoundry.org/ontology/xao" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.17zapb" + "@id": "https://registry.identifiers.org/registry/antibodyregistry" }, { - "@id": "https://bioportal.bioontology.org/ontologies/XAO" + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry" }, { - "@id": "http://aber-owl.net/ontology/XAO" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "reagent" }, { - "@value": "anatomy" + "@value": "unique identifiers" }, { - "@value": "life science" + "@value": "antibody" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.xenbase.org/anatomy/xao.do?method=display" - }, - "https://bioregistry.io/schema/#0000005": "0004486", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/xao.owl" + "@id": "http://antibodyregistry.org/" }, + "https://bioregistry.io/schema/#0000005": "493771", + "https://bioregistry.io/schema/#0000006": "http://antibodyregistry.org/AB_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/xpo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9611-1279" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XAO_", + "https://bioregistry.io/schema/#0000024": "http://antibodyregistry.org/AB_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/XAO_0004486" + "@id": "http://antibodyregistry.org/AB_493771" }, "https://bioregistry.io/schema/#0000029": { - "@value": "xao" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ecogene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "antibodyregistry" } }, { - "@id": "http://aber-owl.net/ontology/PR", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://edamontology.org/data_1188", + "@id": "https://www.uniprot.org/database/DB-0129", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208", + "@id": "http://www.wikidata.org/entity/P8061", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOVT", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/peco", + "@id": "https://bioregistry.io/registry/mycobank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.", + "http://purl.org/dc/terms/description": "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Planteome/plant-experimental-conditions-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Experimental Conditions Ontology" + "@value": "Fungal Nomenclature and Species Bank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PECO" - }, - { - "@id": "http://www.ontobee.org/ontology/PECO" + "@id": "https://registry.identifiers.org/registry/mycobank" }, { - "@id": "https://fairsharing.org/FAIRsharing.6yNXYK" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PECO" + "@id": "https://registry.bio2kg.org/resource/mycobank" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco" + "@id": "https://www.re3data.org/repository/r3d100011222" }, { - "@id": "http://aber-owl.net/ontology/PECO" + "@id": "https://fairsharing.org/FAIRsharing.v8se8r" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PECO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank" }, { - "@id": "https://www.obofoundry.org/ontology/peco" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "classification" }, { - "@value": "ontology" + "@value": "taxonomy" }, { - "@value": "botany" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://planteome.org/" - }, - "https://bioregistry.io/schema/#0000005": "0007114", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PECO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/peco.owl" + "@id": "http://www.mycobank.org/" }, + "https://bioregistry.io/schema/#0000005": "349124", + "https://bioregistry.io/schema/#0000006": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/mco" - }, - { - "@id": "https://bioregistry.io/registry/agro" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1005-8383" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PECO_", + "https://bioregistry.io/schema/#0000024": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PECO_0007114" + "@id": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=349124" }, "https://bioregistry.io/schema/#0000029": { - "@value": "peco" + "@value": "mycobank" } }, { - "@id": "https://bioregistry.io/registry/dgrc", + "@id": "https://bioregistry.io/registry/bartoc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drosophila Genomics Resource Center" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/gbv/bartoc.org" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Basic Register of Thesauri, Ontologies & Classifications" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.f1777e" + }, + { + "@id": "http://www.wikidata.org/entity/P2689" + }, + { + "@id": "https://bartoc.org/en/node/2054" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology and terminology" + }, + { + "@value": "knowledge and information systems" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dgrc.bio.indiana.edu/cells/Catalog" + "@id": "https://bartoc.org" }, - "https://bioregistry.io/schema/#0000005": "215", - "https://bioregistry.io/schema/#0000006": "https://dgrc.bio.indiana.edu/product/View?product=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "241", + "https://bioregistry.io/schema/#0000006": "https://bartoc.org/en/node/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dgrc.bio.indiana.edu/product/View?product=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7613-4123" + }, + "https://bioregistry.io/schema/#0000024": "https://bartoc.org/en/node/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/048vdhs48" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "https://dgrc.bio.indiana.edu/product/View?product=215" + "@id": "https://bartoc.org/en/node/241" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dgrc" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pzvw40", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "bartoc" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM", + "@id": "http://aber-owl.net/ontology/GAZ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/ird.segment", + "@id": "https://registry.bio2kg.org/resource/hmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.uniprot.org/database/DB-0046", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi", + "@id": "https://bioregistry.io/registry/snornabase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "snoRNABase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/snornalbmedb" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "rna" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www-snorna.biotoul.fr/" + }, + "https://bioregistry.io/schema/#0000005": "SR0000178", + "https://bioregistry.io/schema/#0000006": "http://www-snorna.biotoul.fr/plus.php?id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www-snorna.biotoul.fr/plus.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www-snorna.biotoul.fr/plus.php?id=SR0000178" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "snornabase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb", + "@id": "http://aber-owl.net/ontology/ERO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD", + "@id": "https://bioportal.bioontology.org/ontologies/OOSTT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE", + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ega.dataset", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/caps", + "@id": "https://bioregistry.io/registry/viaf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.", + "http://purl.org/dc/terms/description": "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CAPS-DB" + "@value": "Virtual International Authority File" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS" + "@id": "https://registry.identifiers.org/registry/viaf" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf" }, { - "@id": "https://registry.identifiers.org/registry/caps" + "@id": "https://bartoc.org/en/node/2053" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home" + "@id": "http://viaf.org" }, - "https://bioregistry.io/schema/#0000005": "434", - "https://bioregistry.io/schema/#0000006": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1", + "https://bioregistry.io/schema/#0000005": "75121530", + "https://bioregistry.io/schema/#0000006": "http://viaf.org/viaf/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=", + "https://bioregistry.io/schema/#0000024": "http://viaf.org/viaf/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=434" + "@id": "http://viaf.org/viaf/75121530" }, "https://bioregistry.io/schema/#0000029": { - "@value": "caps" + "@value": "viaf" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi", + "@id": "https://bioregistry.io/registry/dolce", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Descriptive Ontology for Linguistic and Cognitive Engineering" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.ae8hpt" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "linguistics" + }, + { + "@value": "subject agnostic" + }, + { + "@value": "knowledge and information systems" + }, + { + "@value": "computer science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.loa.istc.cnr.it/dolce/overview.html" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "dolce" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug", + "@id": "https://bioregistry.io/metaregistry/biocontext/NBN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100010219", + "@id": "http://www.wikidata.org/entity/P3852", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.nwgynk", + "@id": "https://bioregistry.io/registry/idoo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifiers.org Ontology", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-5208-3432", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nicole Vasilevsky" + "@value": "Identifiers.org Ontology" }, - "http://xmlns.com/foaf/0.1/mbox": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "nicole@tislab.org" + "@id": "https://registry.identifiers.org/registry/idoo" }, { - "@value": "vasilevs@ohsu.edu" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo" } - ] + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology" + }, + "https://bioregistry.io/schema/#0000005": "DataCollection", + "https://bioregistry.io/schema/#0000006": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#DataCollection" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "idoo" + } }, { - "@id": "https://registry.identifiers.org/registry/mir", + "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/complexportal", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/multicellds.collection", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/stn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/multicellds" - } - ], + "http://purl.org/dc/terms/description": "The pre-IND tracking number for submissions to the FDA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MultiCellDS collection" + "@value": "FDA Submission Tracking Number" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/multicellds.collection" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://multicellds.org/MultiCellDB.php" + "@id": "https://www.fda.gov/media/128698/download" }, - "https://bioregistry.io/schema/#0000005": "MCDS_C_0000000001", - "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", - "https://bioregistry.io/schema/#0000008": "^MCDS_C_[a-zA-Z0-9]{1,10}$", + "https://bioregistry.io/schema/#0000005": "125768", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://multicellds.org/MultiCellDB/MCDS_C_0000000001" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "multicellds.collection" + "@value": "stn" } }, { - "@id": "https://bioregistry.io/registry/oryzabase.stage", + "@id": "https://bioregistry.io/registry/lotus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.", + "http://purl.org/dc/terms/description": "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryzabase Stage" + "@value": "LOTUS Initiative for Open Natural Products Research" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE" + "@value": "chemistry" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.stage" + "@value": "drugs" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage" + "@value": "metabolites" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" + "@id": "https://lotus.naturalproducts.net" }, - "https://bioregistry.io/schema/#0000005": "34", - "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "LTS0004651", + "https://bioregistry.io/schema/#0000006": "https://lotus.naturalproducts.net/compound/lotus_id/$1", + "https://bioregistry.io/schema/#0000008": "^LTS\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0443-9902" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://lotus.naturalproducts.net/compound/lotus_id/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/34" + "@id": "https://lotus.naturalproducts.net/compound/lotus_id/LTS0004651" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oryzabase.stage" + "@value": "lotus" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICEO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb", + "@id": "https://registry.bio2kg.org/resource/isbn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/iev", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0001-6512-3296", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Peter Midford" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "peteremidford@yahoo.com" + "@id": "https://registry.bio2kg.org/resource/scpd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SPD", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/signaling-gateway", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling.", + "@id": "http://www.ontobee.org/ontology/MICRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Signaling Gateway" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/signaling-gateway" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway" - }, - { - "@id": "https://registry.bio2kg.org/resource/signaling-gateway" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathway" - }, - { - "@value": "protein" - }, - { - "@value": "small molecule" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.signaling-gateway.org/molecule" - }, - "https://bioregistry.io/schema/#0000005": "A001094", - "https://bioregistry.io/schema/#0000006": "http://www.signaling-gateway.org/molecule/query?afcsid=$1", - "https://bioregistry.io/schema/#0000008": "^A\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.signaling-gateway.org/molecule/query?afcsid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.signaling-gateway.org/molecule/query?afcsid=A001094" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "signaling-gateway" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/ogms", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/intact", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/funcbase.yeast", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.", + "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OGMS/ogms" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for General Medical Science" + "@value": "FuncBase Yeast" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/OGMS" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rvz0m9" - }, - { - "@id": "https://www.obofoundry.org/ontology/ogms" - }, - { - "@id": "http://www.ontobee.org/ontology/OGMS" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms" - }, - { - "@id": "http://aber-owl.net/ontology/OGMS" - }, - { - "@id": "https://bartoc.org/en/node/216" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" - }, - { - "@value": "medicine" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast" }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/funcbase.yeast" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OGMS/ogms" - }, - "https://bioregistry.io/schema/#0000005": "0000031", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGMS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ogms.owl" + "@id": "http://func.mshri.on.ca/yeast" }, + "https://bioregistry.io/schema/#0000005": "2701", + "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" - }, - { - "@id": "https://bioregistry.io/registry/labo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1346-1327" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ogms/OMRE" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGMS_", + "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OGMS_0000031" + "@id": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/2701" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ogms" + "@value": "funcbase.yeast" } }, { - "@id": "https://orcid.org/0000-0002-1767-2343", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gerhard Mayer" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gerhard.mayer@rub.de" + "@id": "https://www.re3data.org/repository/r3d100012715", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/gabi", + "@id": "https://registry.bio2kg.org/resource/splicenest", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/FYPO", + "@id": "https://registry.identifiers.org/registry/maizegdb.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/mesh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://orcid.org/0000-0001-8638-8525", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fernanda Dorea" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "fernanda.dorea@sva.se" } }, { - "@id": "https://registry.bio2kg.org/resource/wbphenotype", + "@id": "https://registry.identifiers.org/registry/civic.gid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/PORO", + "@id": "https://registry.identifiers.org/registry/rebase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFOEM", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://www.ontobee.org/ontology/GECKO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100010372", + "@id": "https://registry.identifiers.org/registry/clb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_320", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://orcid.org/0000-0002-2627-833X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Peer Bork" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bork@embl.de" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-5325-4934", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ctibor Škuta" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ctibor.skuta@img.cas.cz" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/ncbiprotein", + "@id": "http://aber-owl.net/ontology/FMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/fma", + "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.uniprot.org/database/DB-0258", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/foodb.compound", + "@id": "https://bioregistry.io/registry/gmd.ref", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.", + "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FooDB compound" + "@value": "Golm Metabolome Database Reference Substance" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND" - }, - { - "@id": "https://registry.identifiers.org/registry/foodb.compound" - }, - { - "@id": "http://www.wikidata.org/entity/P8117" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodb.compound" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref" }, { - "@id": "https://www.re3data.org/repository/r3d100012152" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound" + "@id": "https://registry.identifiers.org/registry/gmd.ref" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://foodb.ca/" + "@id": "http://gmd.mpimp-golm.mpg.de/" }, - "https://bioregistry.io/schema/#0000005": "FDB002100", - "https://bioregistry.io/schema/#0000006": "http://foodb.ca/compounds/$1", - "https://bioregistry.io/schema/#0000008": "^FDB\\d+$", + "https://bioregistry.io/schema/#0000005": "8cf84adb-b4db-4807-ac98-0004247c35df", + "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1", + "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "foodb" - }, - "https://bioregistry.io/schema/#0000024": "http://foodb.ca/compounds/", + "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://foodb.ca/compounds/FDB002100" + "@id": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/8cf84adb-b4db-4807-ac98-0004247c35df" }, "https://bioregistry.io/schema/#0000029": { - "@value": "foodb.compound" + "@value": "gmd.ref" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MPIO", + "@id": "https://fairsharing.org/FAIRsharing.a4ww64", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/WB-LS", + "@id": "https://orcid.org/0000-0002-5990-4157", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stefan Kuhn" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "stefan.kuhn@dmu.ac.uk" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/sdgio", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d3pqw7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/IOBC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/clb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.", + "http://purl.org/dc/terms/description": "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SDG-InterfaceOntology/sdgio" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sustainable Development Goals Interface Ontology" + "@value": "ChecklistBank" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO" - }, - { - "@id": "http://www.ontobee.org/ontology/SDGIO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d5ff6e" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "environmental science" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SDG-InterfaceOntology/sdgio" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/clb" }, - "https://bioregistry.io/schema/#0000005": "00020134", - "https://bioregistry.io/schema/#0000006": "http://purl.unep.org/sdg/SDGIO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.checklistbank.org" }, + "https://bioregistry.io/schema/#0000005": "1010", + "https://bioregistry.io/schema/#0000006": "https://www.checklistbank.org/dataset/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+(LR)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4366-3088" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.unep.org/sdg/SDGIO_", + "https://bioregistry.io/schema/#0000024": "https://www.checklistbank.org/dataset/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.unep.org/sdg/SDGIO_00020134" + "@id": "https://www.checklistbank.org/dataset/1010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sdgio" + "@value": "clb" } }, { - "@id": "https://bioregistry.io/registry/bcgo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An application ontology built for beta cell genomics studies.", + "@id": "https://registry.bio2kg.org/resource/tao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obi-bcgo/bcgo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Beta Cell Genomics Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.obofoundry.org/ontology/bcgo" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO" - }, - { - "@id": "http://aber-owl.net/ontology/BCGO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BCGO" - }, - { - "@id": "http://www.ontobee.org/ontology/BCGO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obi-bcgo/bcgo" - }, - "https://bioregistry.io/schema/#0000005": "0000015", - "https://bioregistry.io/schema/#0000006": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/obi-bcgo/bcgo/raw/master/ontology/bcgo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/0000015" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bcgo" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/pdb-ccd", + "@id": "https://fairsharing.org/FAIRsharing.dzxae", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/sio", + "@id": "https://fairsharing.org/FAIRsharing.mye76w", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mm72as", + "@id": "https://bioportal.bioontology.org/ontologies/NMR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/olatdv", + "@id": "https://bioportal.bioontology.org/ontologies/FLU", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/insdc.run", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Life cycle stages for Medaka", + "http://purl.org/dc/terms/description": "An experimental run, served thrugh the ENA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medaka Developmental Stages" + "@value": "International Nucleotide Sequence Database Collaboration (INSDC) Run" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.c86z66" - }, - { - "@id": "http://aber-owl.net/ontology/OLATDV" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv" - }, - { - "@id": "https://www.obofoundry.org/ontology/olatdv" - }, - { - "@id": "http://www.ontobee.org/ontology/OlatDv" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OLATDV" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, - { - "@value": "aquaculture" - }, - { - "@value": "ontology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv" - }, - "https://bioregistry.io/schema/#0000005": "0000210", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OlatDv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/olatdv.owl" + "@id": "https://www.insdc.org/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" + "https://bioregistry.io/schema/#0000005": "ERR436051", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/browser/view/$1", + "https://bioregistry.io/schema/#0000008": "^(E|D|S)RR[0-9]{6,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OlatDv_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/browser/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OlatDv_0000210" + "@id": "https://www.ebi.ac.uk/ena/browser/view/ERR436051" }, "https://bioregistry.io/schema/#0000029": { - "@value": "olatdv" + "@value": "insdc.run" } }, { - "@id": "https://registry.identifiers.org/registry/utrdb", + "@id": "https://bioportal.bioontology.org/ontologies/LPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STRING", + "@id": "https://fairsharing.org/FAIRsharing.gkw1w8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://orcid.org/0000-0003-1082-8760", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alvin Walker" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "awalker@apa.org" } }, { - "@id": "http://aber-owl.net/ontology/OGMS", + "@id": "https://fairsharing.org/FAIRsharing.yk38tw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/agricola", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_360", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Agricultural Online Access" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/agricola" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA" - }, - { - "@id": "https://www.uniprot.org/database/DB-0266" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://agricola.nal.usda.gov/" - }, - "https://bioregistry.io/schema/#0000005": "50018", - "https://bioregistry.io/schema/#0000006": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "AGRICOLA_ID" - }, - { - "@value": "AGR" - } - ], - "https://bioregistry.io/schema/#0000024": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=50018" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "agricola" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/ngbo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Dalalghamdi/NGBO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Next Generation Biobanking Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/NGBO" - }, - { - "@id": "https://www.obofoundry.org/ontology/ngbo" - }, - { - "@id": "http://www.ontobee.org/ontology/NGBO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NGBO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/merops", + "http://purl.org/dc/terms/hasPart": [ { - "@value": "obo" + "@id": "https://bioregistry.io/registry/merops.clan" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/merops.family" } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Dalalghamdi/NGBO" - }, - "https://bioregistry.io/schema/#0000005": "6000122", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NGBO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ngbo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2801-0767" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NGBO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NGBO_6000122" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ngbo" - } + ] }, { - "@id": "https://registry.bio2kg.org/resource/mirbase.mature", + "@id": "https://registry.bio2kg.org/resource/mmsinc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/nomen", + "@id": "https://bioregistry.io/registry/nlfff", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.", + "http://purl.org/dc/terms/description": "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SpeciesFileGroup/nomen" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A nomenclatural ontology for biological names" + "@value": "NLFFF Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen" - }, - { - "@id": "http://aber-owl.net/ontology/NOMEN" - }, - { - "@id": "http://www.ontobee.org/ontology/NOMEN" - }, - { - "@id": "https://www.obofoundry.org/ontology/nomen" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NOMEN" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SpeciesFileGroup/nomen" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/nlfff" }, - "https://bioregistry.io/schema/#0000005": "0000295", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NOMEN_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/nomen.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nlfff.dataset.deepsolar.space/en/" }, + "https://bioregistry.io/schema/#0000005": "345201101230312003", + "https://bioregistry.io/schema/#0000006": "http://database.deepsolar.space:18080/dbs/nlfff/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5640-5491" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NOMEN_", + "https://bioregistry.io/schema/#0000024": "http://database.deepsolar.space:18080/dbs/nlfff/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NOMEN_0000295" + "@id": "http://database.deepsolar.space:18080/dbs/nlfff/345201101230312003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nomen" + "@value": "nlfff" } }, { - "@id": "http://edamontology.org/data_2611", + "@id": "https://registry.bio2kg.org/resource/doqcs.pathway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-9528-6018", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gianni Cesareni" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gianni.cesareni@torvergata.it" + "@id": "https://fairsharing.org/FAIRsharing.g0c5qn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc", + "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/sasbdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.", + "@id": "https://registry.identifiers.org/registry/pgs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Small Angle Scattering Biological Data Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.re3data.org/repository/r3d100012273" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB" - }, - { - "@id": "https://registry.identifiers.org/registry/sasbdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb" - }, - { - "@id": "https://www.uniprot.org/database/DB-0258" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "molecular biology" - }, - { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sasbdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "SASDAX8", - "https://bioregistry.io/schema/#0000006": "http://www.sasbdb.org/data/$1", - "https://bioregistry.io/schema/#0000008": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1321-3956" - }, - "https://bioregistry.io/schema/#0000024": "http://www.sasbdb.org/data/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.sasbdb.org/data/SASDAX8" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sasbdb" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/orcid", + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/redfly", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.", + "http://purl.org/dc/terms/description": "REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ORCID" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Researcher and Contributor" + "@value": "Regulatory Elements Database for Drosophila" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/redfly" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "regulation" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.nx58jg" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID" - }, - { - "@id": "http://www.wikidata.org/entity/P496" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID" - }, - { - "@id": "https://bartoc.org/en/node/2021" - }, - { - "@id": "https://registry.identifiers.org/registry/orcid" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "person" - }, - { - "@value": "subject agnostic" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://orcid.org" + "@id": "http://redfly.ccr.buffalo.edu" }, - "https://bioregistry.io/schema/#0000005": "0000-0002-5355-2576", - "https://bioregistry.io/schema/#0000006": "https://orcid.org/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4654-1403" + "https://bioregistry.io/schema/#0000005": "8", + "https://bioregistry.io/schema/#0000006": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "ORCiD" - }, - { - "@value": "ORCID" - } - ], - "https://bioregistry.io/schema/#0000024": "https://orcid.org/", + "https://bioregistry.io/schema/#0000024": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://orcid.org/0000-0002-5355-2576" + "@id": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=8" }, "https://bioregistry.io/schema/#0000029": { - "@value": "orcid" + "@value": "redfly" } }, { - "@id": "https://bioregistry.io/registry/cryoem", + "@id": "https://bioregistry.io/metaregistry/biocontext/DOID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/microsporidia", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles", + "http://purl.org/dc/terms/description": "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cryo Electron Microscopy ontology" + "@value": "MicrosporidiaDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/CRYOEM" + "@id": "https://registry.bio2kg.org/resource/microsporidia" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM" + "@id": "https://registry.identifiers.org/registry/microsporidia" }, { - "@id": "https://fairsharing.org/FAIRsharing.q47I0t" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem" + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "eukaryotic" }, { - "@value": "structural biology" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://scipion.i2pc.es/ontology/cryoem" - }, - "https://bioregistry.io/schema/#0000005": "0000052", - "https://bioregistry.io/schema/#0000006": "http://scipion.i2pc.es/ontology/CRYOEM_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://scipion.i2pc.es/ontology/cryoem/releases/2021-03-09/cryoem.owl" + "@id": "http://microsporidiadb.org/micro/" }, + "https://bioregistry.io/schema/#0000005": "ECU03_0820i", + "https://bioregistry.io/schema/#0000006": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9473-283X" - }, - "https://bioregistry.io/schema/#0000024": "http://scipion.i2pc.es/ontology/CRYOEM_", + "https://bioregistry.io/schema/#0000024": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://scipion.i2pc.es/ontology/CRYOEM_0000052" + "@id": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=ECU03_0820i" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cryoem" - } - }, - { - "@id": "https://registry.identifiers.org/registry/civic.sid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tawpg2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/genecards", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "microsporidia" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE", + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap", + "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-5739-1781", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jianjiong Gao" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gaoj@mskcc.org" - } - }, - { - "@id": "https://bioregistry.io/registry/multicellds.cell_line", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/multicellds" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MultiCellDS Digital Cell Line" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/multicellds.cell_line" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://multicellds.org/MultiCellDB.php" - }, - "https://bioregistry.io/schema/#0000005": "MCDS_L_0000000001", - "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", - "https://bioregistry.io/schema/#0000008": "^MCDS_L_[a-zA-Z0-9]{1,10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://multicellds.org/MultiCellDB/MCDS_L_0000000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "multicellds.cell_line" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/XPO", + "@id": "https://registry.bio2kg.org/resource/viroligo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/funcbase.fly", + "@id": "https://bioregistry.io/registry/p3db.site", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", + "http://purl.org/dc/terms/description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FuncBase Fly" + "@value": "P3DB Site" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly" + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.fly" + "@id": "https://registry.identifiers.org/registry/p3db.site" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://func.mshri.on.ca/fly" + "@id": "http://www.p3db.org/" }, - "https://bioregistry.io/schema/#0000005": "10194", - "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1", + "https://bioregistry.io/schema/#0000005": "65", + "https://bioregistry.io/schema/#0000006": "http://www.p3db.org/phosphosite.php?id=$1&ref=0", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/p3db.site:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://func.mshri.on.ca/fly/genes/list_functional_scores/10194" + "@id": "http://www.p3db.org/phosphosite.php?id=65&ref=0" }, "https://bioregistry.io/schema/#0000029": { - "@value": "funcbase.fly" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3841", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010604", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/zea", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "p3db.site" } }, { - "@id": "https://bioregistry.io/registry/mtbd", + "@id": "https://bioregistry.io/registry/scopus.work", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors.", + "http://purl.org/dc/terms/description": "unique academic work identifier assigned in Scopus bibliographic database", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Tumor Biology Database" + "@value": "Scopus Work" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/mtbd" + "@id": "http://www.wikidata.org/entity/P1154" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "gene expression" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://tumor.informatics.jax.org" + "@id": "https://www.scopus.com/" }, - "https://bioregistry.io/schema/#0000005": "1374", - "https://bioregistry.io/schema/#0000006": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1", + "https://bioregistry.io/schema/#0000005": "2-s2.0-0030770923", + "https://bioregistry.io/schema/#0000006": "http://www.scopus.com/record/display.url?origin=inward&eid=$1", + "https://bioregistry.io/schema/#0000008": "^2-s2\\.0-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000023": { + "@value": "scopus.eid" }, - "https://bioregistry.io/schema/#0000024": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=", + "https://bioregistry.io/schema/#0000024": "http://www.scopus.com/record/display.url?origin=inward&eid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=1374" + "@id": "http://www.scopus.com/record/display.url?origin=inward&eid=2-s2.0-0030770923" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mtbd" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl.fungi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000407", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@value": "scopus.work" } }, { - "@id": "http://www.wikidata.org/entity/P3382", + "@id": "https://bartoc.org/en/node/20428", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/bbkg", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Blue Brain Project's published data as knowledge graphs and Web Studios.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-9667-0572", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Blue Brain Project Knowledge Graph" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/bbkg" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://portal.bluebrain.epfl.ch" - }, - "https://bioregistry.io/schema/#0000005": "topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a", - "https://bioregistry.io/schema/#0000006": "https://bbp.epfl.ch/nexus/web/studios/public/$1", - "https://bioregistry.io/schema/#0000008": "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bbp.epfl.ch/nexus/web/studios/public/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a" + "@value": "Yoshiharu Y. Yamamoto" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bbkg" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011646", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DATACITE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ppdb@gifu-u.ac.jp" } }, { - "@id": "https://orcid.org/0000-0001-7961-6091", + "@id": "https://orcid.org/0000-0002-3336-2476", + "http://purl.org/dc/terms/contributor": [ + { + "@id": "https://bioregistry.io/registry/hoso" + }, + { + "@id": "https://bioregistry.io/registry/hepro" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Monique Zahn" + "@value": "Paul Fabry" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "monique.zahn@sib.swiss" + "@value": "paul.fabry@usherbrooke.ca" } }, { - "@id": "https://registry.identifiers.org/registry/bugbase.expt", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/schema/#0000001", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A type for entries in the Bioregistry's registry." - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Resource" + "@id": "http://aber-owl.net/ontology/BIOLINK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/scop.sccs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0003-4614-562X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SCOP(e) concise classification string" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://edamontology.org/data_1041" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scop.berkeley.edu" - }, - "https://bioregistry.io/schema/#0000005": "a.39.1.1", - "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sccs=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5153-9079" - }, - "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sccs=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://scop.berkeley.edu/sccs=a.39.1.1" + "@value": "Pierre Grenon" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scop.sccs" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pierre.grenon@ifomis.uni-saarland.de" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5949vn", + "@id": "https://fairsharing.org/FAIRsharing.xs6t67", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/glycoepitope", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MESH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MONDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EHDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GSSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SEP", + "@id": "https://fairsharing.org/FAIRsharing.mzc066", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS", + "@id": "https://bioregistry.io/metaregistry/biocontext/CRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.we2r5a", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-6183-4429", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alberto Traverso" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "alberto.traverso@maastro.nl" - } - }, - { - "@id": "https://bioregistry.io/registry/vario", + "@id": "https://bioregistry.io/registry/trans", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.", + "http://purl.org/dc/terms/description": "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/DiseaseOntology/PathogenTransmissionOntology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Variation Ontology" + "@value": "Pathogen Transmission Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/VARIO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VARIO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO" + "@id": "https://registry.bio2kg.org/resource/pt" }, { - "@id": "https://registry.identifiers.org/registry/vario" + "@id": "http://aber-owl.net/ontology/TRANS" }, { - "@id": "http://aber-owl.net/ontology/VARIO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans" }, { - "@id": "https://www.obofoundry.org/ontology/vario" + "@id": "https://fairsharing.org/FAIRsharing.nygmp7" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario" + "@id": "https://www.obofoundry.org/ontology/trans" }, { - "@id": "https://fairsharing.org/FAIRsharing.65xkbs" + "@id": "http://www.ontobee.org/ontology/TRANS" }, { - "@id": "http://www.ontobee.org/ontology/VariO" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario" + "@id": "https://bioportal.bioontology.org/ontologies/TRANS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "obo" }, { - "@value": "genetics" + "@value": "health science" }, { - "@value": "obo" + "@value": "pathogen" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://variationontology.org" + "@id": "https://github.com/DiseaseOntology/PathogenTransmissionOntology" }, - "https://bioregistry.io/schema/#0000005": "0376", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VariO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0000024", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TRANS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vario.owl" + "@id": "http://purl.obolibrary.org/obo/trans.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9614-7976" + "@id": "https://orcid.org/0000-0001-8910-9851" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TRANS_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/TRANS_0000024" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VariO_", "https://bioregistry.io/schema/#0000029": { - "@value": "vario" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zx1td8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "trans" } }, { - "@id": "https://registry.identifiers.org/registry/snp2tfbs", + "@id": "http://aber-owl.net/ontology/PDUMDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/tcb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tick Cell Biobank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.pirbright.ac.uk/tick-cell-lines-views-page" + "@id": "https://bioregistry.io/collection/0000011", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": [ + { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + { + "@id": "https://orcid.org/0000-0001-5886-7860" + } + ], + "http://purl.org/dc/elements/1.1/description": { + "@value": "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." }, - "https://bioregistry.io/schema/#0000005": "2966", - "https://bioregistry.io/schema/#0000006": "https://www.pirbright.ac.uk/node/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.pirbright.ac.uk/node/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.pirbright.ac.uk/node/2966" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tcb" - } - }, - { - "@id": "https://bioregistry.io/registry/exo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/CTDbase/exposure-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Exposure ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/EXO" - }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXO" + "@id": "https://bioregistry.io/registry/afo" }, { - "@id": "http://www.ontobee.org/ontology/ExO" + "@id": "https://bioregistry.io/registry/emmo.cif" }, { - "@id": "https://www.obofoundry.org/ontology/exo" + "@id": "https://bioregistry.io/registry/cheminf" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EXO" + "@id": "https://bioregistry.io/registry/chmo" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://fairsharing.org/FAIRsharing.6hna78" + "@id": "https://bioregistry.io/registry/voc4cat" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "environmental science" + "@id": "https://bioregistry.io/registry/dolce" }, { - "@value": "epigenetics" + "@id": "https://bioregistry.io/registry/iso15926" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/rxno" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/bfo" }, { - "@value": "toxicology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/CTDbase/exposure-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000078", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ExO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/exo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/registry/cao" }, { - "@id": "https://bioregistry.io/registry/ecto" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2908-3327" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ExO" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ExO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ExO_0000078" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "exo" - } - }, - { - "@id": "https://bioregistry.io/registry/emmo.cif", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/emmo-repo/CIF-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crystallographic Information Framework" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.iucr.org/resources/cif" - }, - "https://bioregistry.io/schema/#0000005": "_space_group_symop.operation_xyz", - "https://bioregistry.io/schema/#0000006": "http://emmo.info/emmo/cif-core#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1560-809X" - }, - "https://bioregistry.io/schema/#0000024": "http://emmo.info/emmo/cif-core#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://emmo.info/emmo/cif-core#_space_group_symop.operation_xyz" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "emmo.cif" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/po", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/pina", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Interaction Network Analysis" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/pina" + "@id": "https://bioregistry.io/registry/sbo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PINA" + "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina" + "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" }, { - "@id": "https://fairsharing.org/FAIRsharing.7q4gsz" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "https://bioregistry.io/registry/rex" }, { - "@value": "data visualization" + "@id": "https://bioregistry.io/registry/emmo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cbg.garvan.unsw.edu.au/pina/" - }, - "https://bioregistry.io/schema/#0000005": "Q13485", - "https://bioregistry.io/schema/#0000006": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8876-128X" - }, - "https://bioregistry.io/schema/#0000024": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=Q13485" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pina" - } - }, - { - "@id": "https://bioregistry.io/registry/linkml", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/linkml/" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LinkML" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.cb7086" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "data integration" - }, - { - "@value": "ontology and terminology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://linkml.io/linkml-model/docs/SchemaDefinition/" - }, - "https://bioregistry.io/schema/#0000005": "SchemaDefinition", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/linkml/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/linkml/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/linkml/SchemaDefinition" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "linkml" + "@value": "NDFI4Cat Collection" } }, { - "@id": "https://fairsharing.org/FAIRsharing.aSszvY", + "@id": "https://fairsharing.org/FAIRsharing.jr30xc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ised", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea.", + "@id": "https://bioportal.bioontology.org/ontologies/CEPH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Influenza Sequence and Epitope Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/ised" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://influenza.korea.ac.kr" - }, - "https://bioregistry.io/schema/#0000005": "AY209920", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "ised" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon", + "@id": "http://www.ontobee.org/ontology/OVAE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://www.ontobee.org/ontology/AISM", + "@id": "https://bioregistry.io/metaregistry/biocontext/NASC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/mpid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Microbial Protein Interaction Database" + "@id": "https://bioregistry.io/metaregistry/obofoundry", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPID" + "@id": "https://www.obofoundry.org/ontology/oostt" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid" + "@id": "https://www.obofoundry.org/ontology/mop" }, { - "@id": "https://registry.bio2kg.org/resource/mpi" + "@id": "https://www.obofoundry.org/ontology/ovae" }, { - "@id": "https://fairsharing.org/FAIRsharing.eyjkws" + "@id": "https://www.obofoundry.org/ontology/obib" }, { - "@id": "https://registry.identifiers.org/registry/mpid" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "interaction" + "@id": "https://www.obofoundry.org/ontology/poro" }, { - "@value": "small molecule" + "@id": "https://www.obofoundry.org/ontology/clo" }, { - "@value": "life science" + "@id": "https://www.obofoundry.org/ontology/exo" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.jcvi.org/mpidb/about.php" - }, - "https://bioregistry.io/schema/#0000005": "172", - "https://bioregistry.io/schema/#0000006": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "mpidb" - }, - "https://bioregistry.io/schema/#0000024": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=172" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mpid" - } - }, - { - "@id": "https://bioregistry.io/registry/tahe", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terminology of Anatomy of Human Embryology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/rs" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE" + "@id": "https://www.obofoundry.org/ontology/xlmod" }, { - "@id": "https://www.obofoundry.org/ontology/tahe" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/spd" + }, { - "@value": "ontology" + "@id": "https://www.obofoundry.org/ontology/zp" }, { - "@value": "obo" - } - ], - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAHE_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb25d6d0b2d8c4f4791e8dc90a749eff0" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAHE_", - "https://bioregistry.io/schema/#0000029": { - "@value": "tahe" - } - }, - { - "@id": "_:Nb25d6d0b2d8c4f4791e8dc90a749eff0", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre Sprumont" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pierre.sprumont@unifr.ch" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7e9cff", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cgnc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/cmo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7xkx69", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/dbd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Transcription Factor Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/fbdv" + }, { - "@id": "http://edamontology.org/data_2716" + "@id": "https://www.obofoundry.org/ontology/ornaseq" }, { - "@id": "https://registry.bio2kg.org/resource/dbd" + "@id": "https://www.obofoundry.org/ontology/cdno" }, { - "@id": "https://registry.identifiers.org/registry/dbd" + "@id": "https://www.obofoundry.org/ontology/ohpi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd" + "@id": "https://www.obofoundry.org/ontology/obcs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBD" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/ontoavida" + }, { - "@value": "genome" + "@id": "https://www.obofoundry.org/ontology/xpo" }, { - "@value": "regulation" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.transcriptionfactor.org/" - }, - "https://bioregistry.io/schema/#0000005": "0045310", - "https://bioregistry.io/schema/#0000006": "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dbd:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:0045310+cat:DBD" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbd" - } - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.submitter", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b220d4", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://edamontology.org/data_2635", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mf91p5", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/unii", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/receptome.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Plasma Membrane Receptome Families" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/hpmr" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.receptome.org" - }, - "https://bioregistry.io/schema/#0000005": "5.1", - "https://bioregistry.io/schema/#0000006": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=5.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "receptome.family" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/sgd.pathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/nihhesc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIH Human Embryonic Stem Cell Registry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://grants.nih.gov/stem_cells/registry/current.htm" - }, - "https://bioregistry.io/schema/#0000005": "NIHhESC-10-0083", - "https://bioregistry.io/schema/#0000006": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=NIHhESC-10-0083" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nihhesc" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pktgc6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.65dmtr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.LYsiMd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/RS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-9667-0572", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yoshiharu Y. Yamamoto" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ppdb@gifu-u.ac.jp" - } - }, - { - "@id": "https://bartoc.org/en/node/576", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012321", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ino", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-9125-4337", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Francesco Vitali" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "francesco.vitali@ibba.cnr.it" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tair.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/pdro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/pr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PROconsortium/PRoteinOntology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/txpo" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr" + "@id": "https://www.obofoundry.org/ontology/sopharm" }, { - "@id": "https://registry.identifiers.org/registry/pr" + "@id": "https://www.obofoundry.org/ontology/taxrank" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PR" + "@id": "https://www.obofoundry.org/ontology/fbcv" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PR" + "@id": "https://www.obofoundry.org/ontology/iev" }, { - "@id": "http://www.ontobee.org/ontology/PR" + "@id": "https://www.obofoundry.org/ontology/ohd" }, { - "@id": "http://www.wikidata.org/entity/P4926" + "@id": "https://www.obofoundry.org/ontology/ero" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr" + "@id": "https://www.obofoundry.org/ontology/psdo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PR" + "@id": "https://www.obofoundry.org/ontology/flu" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PR" + "@id": "https://www.obofoundry.org/ontology/pdumdv" }, { - "@id": "https://www.obofoundry.org/ontology/pr" + "@id": "https://www.obofoundry.org/ontology/chmo" }, { - "@id": "https://fairsharing.org/FAIRsharing.4ndncv" + "@id": "https://www.obofoundry.org/ontology/ppo" }, { - "@id": "https://registry.bio2kg.org/resource/pr" + "@id": "https://www.obofoundry.org/ontology/cteno" }, { - "@id": "https://www.uniprot.org/database/DB-0181" + "@id": "https://www.obofoundry.org/ontology/mmo" }, { - "@id": "http://aber-owl.net/ontology/PR" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/vario" + }, { - "@value": "obo" + "@id": "https://www.obofoundry.org/ontology/omit" }, { - "@value": "ontology" + "@id": "https://www.obofoundry.org/ontology/fix" }, { - "@value": "protein" + "@id": "https://www.obofoundry.org/ontology/gro" }, { - "@value": "biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://proconsortium.org" - }, - "https://bioregistry.io/schema/#0000005": "000000024", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PR_$1", - "https://bioregistry.io/schema/#0000008": "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pr.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://www.obofoundry.org/ontology/scdo" + }, { - "@id": "https://bioregistry.io/registry/chiro" + "@id": "https://www.obofoundry.org/ontology/ceph" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://www.obofoundry.org/ontology/swo" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://www.obofoundry.org/ontology/geo" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://www.obofoundry.org/ontology/mpio" }, { - "@id": "https://bioregistry.io/registry/pcl" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5809-9523" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://www.obofoundry.org/ontology/cro" + }, { - "@value": "PRO" + "@id": "https://www.obofoundry.org/ontology/ms" }, { - "@value": "PR" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PR_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PR_000000024" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pr" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biotools", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xgcyyn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/NMR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/p3db", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/drugbank.salt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://www.obofoundry.org/ontology/ons" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.obofoundry.org/ontology/ido" }, { - "@id": "https://bioregistry.io/registry/drugbank" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Salts" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.drugbank.ca" - }, - "https://bioregistry.io/schema/#0000005": "DBSALT001211", - "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/salts/$1", - "https://bioregistry.io/schema/#0000008": "^DBSALT\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/salts/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://go.drugbank.com/salts/DBSALT001211" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.salt" - } - }, - { - "@id": "https://bioregistry.io/registry/jgi.proposal", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifiers for proposals/projects at the Joint Genome Institute", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Joint Genome Institute Proposals" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://genome.jgi.doe.gov/portal/" - }, - "https://bioregistry.io/schema/#0000005": "502930", - "https://bioregistry.io/schema/#0000006": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8489-208X" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=502930" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "jgi.proposal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010605", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bdn9br", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ECAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/stap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Statistical Torsional Angles Potentials" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/plana" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STAP" + "@id": "https://www.obofoundry.org/ontology/mco" }, { - "@id": "https://registry.identifiers.org/registry/stap" + "@id": "https://www.obofoundry.org/ontology/aism" }, { - "@id": "https://fairsharing.org/FAIRsharing.ja9cdq" + "@id": "https://www.obofoundry.org/ontology/ehda" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/ro" + }, { - "@value": "life science" + "@id": "https://www.obofoundry.org/ontology/upa" }, { - "@value": "statistics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://psb.kobic.re.kr/STAP/refinement/" - }, - "https://bioregistry.io/schema/#0000005": "1a24", - "https://bioregistry.io/schema/#0000006": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=1a24" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "stap" - } - }, - { - "@id": "https://bioregistry.io/registry/isrctn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ISRCTN registry is a primary clinical trial registry recognised by WHO and ICMJE that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Traditional Medicine Clinical Trial Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.isrctn.com/" - }, - "https://bioregistry.io/schema/#0000005": "ISRCTN10175490", - "https://bioregistry.io/schema/#0000006": "https://www.isrctn.com/$1", - "https://bioregistry.io/schema/#0000008": "^ISRCTN\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.isrctn.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.isrctn.com/ISRCTN10175490" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "isrctn" - } - }, - { - "@id": "https://bioregistry.io/registry/grsdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "G-Rich Sequences Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/miapa" + }, { - "@id": "https://registry.bio2kg.org/resource/grsdb" + "@id": "https://www.obofoundry.org/ontology/dc_cl" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb" + "@id": "https://www.obofoundry.org/ontology/mfmo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB" + "@id": "https://www.obofoundry.org/ontology/ogsf" }, { - "@id": "https://registry.identifiers.org/registry/grsdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/dron" + }, { - "@value": "dna" + "@id": "https://www.obofoundry.org/ontology/sao" }, { - "@value": "rna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinformatics.ramapo.edu/GRSDB2/" - }, - "https://bioregistry.io/schema/#0000005": "10142", - "https://bioregistry.io/schema/#0000006": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=10142" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "grsdb" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013314", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/agrovoc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Agronomy Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/lepao" + }, { - "@id": "https://fairsharing.org/FAIRsharing.anpj91" + "@id": "https://www.obofoundry.org/ontology/mamo" }, { - "@id": "http://www.wikidata.org/entity/P8061" + "@id": "https://www.obofoundry.org/ontology/sibo" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC" + "@id": "https://www.obofoundry.org/ontology/aero" }, { - "@id": "https://bartoc.org/en/node/305" + "@id": "https://www.obofoundry.org/ontology/ncbitaxon" }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/phipo" + }, { - "@value": "fisheries science" + "@id": "https://www.obofoundry.org/ontology/hom" }, { - "@value": "botany" + "@id": "https://www.obofoundry.org/ontology/emapa" }, { - "@value": "nutritional science" + "@id": "https://www.obofoundry.org/ontology/fbsp" }, { - "@value": "forest management" + "@id": "https://www.obofoundry.org/ontology/ncit" }, { - "@value": "environmental science" + "@id": "https://www.obofoundry.org/ontology/labo" }, { - "@value": "data management" + "@id": "https://www.obofoundry.org/ontology/pso" }, { - "@value": "agriculture" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://data.apps.fao.org/catalog/organization/agrovoc" - }, - "https://bioregistry.io/schema/#0000005": "2842", - "https://bioregistry.io/schema/#0000006": "http://aims.fao.org/aos/agrovoc/c_$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N4ddba5cc6d3848468da76008f7a33671" - }, - "https://bioregistry.io/schema/#0000024": "http://aims.fao.org/aos/agrovoc/c_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://aims.fao.org/aos/agrovoc/c_2842" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "agrovoc" - } - }, - { - "@id": "_:N4ddba5cc6d3848468da76008f7a33671", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AGROVOC Team" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "agrovoc@fao.org" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/dbest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011331", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/vita", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Virus' miRNA target" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/vita" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/ehdaa" + }, { - "@value": "gene expression" + "@id": "https://www.obofoundry.org/ontology/emap" }, { - "@value": "rna" + "@id": "https://www.obofoundry.org/ontology/fypo" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://vita.mbc.nctu.edu.tw/" - }, - "https://bioregistry.io/schema/#0000005": "AB016785", - "https://bioregistry.io/schema/#0000006": "http://vita.mbc.nctu.edu.tw/search.php?acc=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://vita.mbc.nctu.edu.tw/search.php?acc=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://vita.mbc.nctu.edu.tw/search.php?acc=AB016785" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vita" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/kestrelo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KESTREL Ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gitlab.pnnl.gov/kestrel/kestrel_ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/kestrelo_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8741-7823" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/kestrelo_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/kestrelo_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kestrelo" - } - }, - { - "@id": "https://orcid.org/0000-0002-1216-2969", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anne Morgat" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://www.obofoundry.org/ontology/eupath" + }, { - "@value": "Anne.Morgat@sib.swiss" + "@id": "https://www.obofoundry.org/ontology/ypo" }, { - "@value": "anne.morgat@sib.swiss" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/greengenes", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "16S rRNA gene database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/zeco" + }, { - "@id": "https://registry.bio2kg.org/resource/greengenes" + "@id": "https://www.obofoundry.org/ontology/rbo" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes" + "@id": "https://www.obofoundry.org/ontology/tto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES" + "@id": "https://www.obofoundry.org/ontology/symp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes" + "@id": "https://www.obofoundry.org/ontology/aeo" }, { - "@id": "https://www.re3data.org/repository/r3d100010549" + "@id": "https://www.obofoundry.org/ontology/rxno" }, { - "@id": "https://fairsharing.org/FAIRsharing.bpxgb6" + "@id": "https://www.obofoundry.org/ontology/tahh" }, { - "@id": "https://registry.identifiers.org/registry/greengenes" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/mmusdv" + }, { - "@value": "rna" + "@id": "https://www.obofoundry.org/ontology/geno" }, { - "@value": "life science" + "@id": "https://www.obofoundry.org/ontology/hao" }, { - "@value": "genetics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://greengenes.lbl.gov/" - }, - "https://bioregistry.io/schema/#0000005": "100000", - "https://bioregistry.io/schema/#0000006": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1618-9827" - }, - "https://bioregistry.io/schema/#0000024": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=100000" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "greengenes" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ordb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/ncbitaxon" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Taxonomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/mat" + }, { - "@id": "http://aber-owl.net/ontology/NCBITAXON" + "@id": "https://www.obofoundry.org/ontology/fao" }, { - "@id": "https://fairsharing.org/FAIRsharing.fj07xj" + "@id": "https://www.obofoundry.org/ontology/miro" }, { - "@id": "https://bartoc.org/en/node/509" + "@id": "https://www.obofoundry.org/ontology/caro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON" + "@id": "https://www.obofoundry.org/ontology/gsso" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy" + "@id": "https://www.obofoundry.org/ontology/vo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID" + "@id": "https://www.obofoundry.org/ontology/doid" }, { - "@id": "http://edamontology.org/data_1179" + "@id": "https://www.obofoundry.org/ontology/tads" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon" + "@id": "https://www.obofoundry.org/ontology/hp" }, { - "@id": "http://www.ontobee.org/ontology/NCBITaxon" + "@id": "https://www.obofoundry.org/ontology/vhog" }, { - "@id": "http://www.wikidata.org/entity/P685" + "@id": "https://www.obofoundry.org/ontology/uberon" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON" + "@id": "https://www.obofoundry.org/ontology/mirnao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY" + "@id": "https://www.obofoundry.org/ontology/mcro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon" + "@id": "https://www.obofoundry.org/ontology/omp" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon" + "@id": "https://www.obofoundry.org/ontology/maxo" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205" + "@id": "https://www.obofoundry.org/ontology/one" }, { - "@id": "https://registry.identifiers.org/registry/taxonomy" + "@id": "https://www.obofoundry.org/ontology/pco" }, { - "@id": "https://www.obofoundry.org/ontology/ncbitaxon" + "@id": "https://www.obofoundry.org/ontology/bco" }, { - "@id": "https://registry.bio2kg.org/resource/taxonomy" + "@id": "https://www.obofoundry.org/ontology/mro" }, { - "@id": "https://www.re3data.org/repository/r3d100010415" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/ato" + }, { - "@value": "protein" + "@id": "https://www.obofoundry.org/ontology/gno" }, { - "@value": "life science" + "@id": "https://www.obofoundry.org/ontology/cl" }, { - "@value": "phylogenetics" + "@id": "https://www.obofoundry.org/ontology/apollo_sv" }, { - "@value": "structure" + "@id": "https://www.obofoundry.org/ontology/ecocore" }, { - "@value": "classification" + "@id": "https://www.obofoundry.org/ontology/oba" }, { - "@value": "dna" + "@id": "https://www.obofoundry.org/ontology/pcl" }, { - "@value": "taxonomy" + "@id": "https://www.obofoundry.org/ontology/omo" }, { - "@value": "obo" + "@id": "https://www.obofoundry.org/ontology/chiro" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/ncbitaxon" - }, - "https://bioregistry.io/schema/#0000005": "2170610", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCBITaxon_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ncbitaxon.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://www.obofoundry.org/ontology/gaz" + }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "https://www.obofoundry.org/ontology/mao" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://www.obofoundry.org/ontology/vsao" }, { - "@id": "https://bioregistry.io/registry/go" + "@id": "https://www.obofoundry.org/ontology/ino" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://www.obofoundry.org/ontology/ado" }, { - "@id": "https://bioregistry.io/registry/ecto" + "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy" }, { - "@id": "https://bioregistry.io/registry/hso" + "@id": "https://www.obofoundry.org/ontology/clao" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@id": "https://www.obofoundry.org/ontology/ncro" }, { - "@id": "https://bioregistry.io/registry/ons" + "@id": "https://www.obofoundry.org/ontology/pgdso" }, { - "@id": "https://bioregistry.io/registry/genepio" + "@id": "https://www.obofoundry.org/ontology/epo" }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://www.obofoundry.org/ontology/mp" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://www.obofoundry.org/ontology/ecto" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://www.obofoundry.org/ontology/olatdv" }, { - "@id": "https://bioregistry.io/registry/chiro" + "@id": "https://www.obofoundry.org/ontology/opl" }, { - "@id": "https://bioregistry.io/registry/vbo" + "@id": "https://www.obofoundry.org/ontology/amphx" }, { - "@id": "https://bioregistry.io/registry/clo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://www.obofoundry.org/ontology/flopo" + }, { - "@value": "uniprot.taxonomy" + "@id": "https://www.obofoundry.org/ontology/ddpheno" }, { - "@value": "NCBITaxonomyID" + "@id": "https://www.obofoundry.org/ontology/zea" }, { - "@value": "NCBITaxon" + "@id": "https://www.obofoundry.org/ontology/mpath" }, { - "@value": "taxid" + "@id": "https://www.obofoundry.org/ontology/aao" }, { - "@value": "NCBI Taxonomy" + "@id": "https://www.obofoundry.org/ontology/nif_cell" }, { - "@value": "taxon" + "@id": "https://www.obofoundry.org/ontology/genepio" }, { - "@value": "TaxonomyID" + "@id": "https://www.obofoundry.org/ontology/mo" }, { - "@value": "NCBI_taxid" + "@id": "https://www.obofoundry.org/ontology/eo" }, { - "@value": "taxonomy" + "@id": "https://www.obofoundry.org/ontology/clyh" }, { - "@value": "TAX" + "@id": "https://www.obofoundry.org/ontology/pw" }, { - "@value": "NCBI_Taxon_ID" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCBITaxon_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02meqm098" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NCBITaxon_2170610" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ncbitaxon" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/spp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Signaling Pathways Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.obofoundry.org/ontology/ogg" + }, { - "@id": "https://registry.identifiers.org/registry/spp" + "@id": "https://www.obofoundry.org/ontology/fideo" }, { - "@id": "https://fairsharing.org/FAIRsharing.WxI96O" + "@id": "https://www.obofoundry.org/ontology/resid" }, { - "@id": "https://www.re3data.org/repository/r3d100013650" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.obofoundry.org/ontology/ontoneo" + }, { - "@value": "omics" + "@id": "https://www.obofoundry.org/ontology/cido" }, { - "@value": "transcriptomics" + "@id": "https://www.obofoundry.org/ontology/peco" + }, + { + "@id": "https://www.obofoundry.org/ontology/oae" + }, + { + "@id": "https://www.obofoundry.org/ontology/vbo" + }, + { + "@id": "https://www.obofoundry.org/ontology/tahe" + }, + { + "@id": "https://www.obofoundry.org/ontology/cmf" + }, + { + "@id": "https://www.obofoundry.org/ontology/fma" + }, + { + "@id": "https://www.obofoundry.org/ontology/imr" + }, + { + "@id": "https://www.obofoundry.org/ontology/mondo" + }, + { + "@id": "https://www.obofoundry.org/ontology/ma" + }, + { + "@id": "https://www.obofoundry.org/ontology/mf" + }, + { + "@id": "https://www.obofoundry.org/ontology/gecko" + }, + { + "@id": "https://www.obofoundry.org/ontology/ecao" + }, + { + "@id": "https://www.obofoundry.org/ontology/propreo" + }, + { + "@id": "https://www.obofoundry.org/ontology/disdriv" + }, + { + "@id": "https://www.obofoundry.org/ontology/nmr" + }, + { + "@id": "https://www.obofoundry.org/ontology/vto" + }, + { + "@id": "https://www.obofoundry.org/ontology/mi" + }, + { + "@id": "https://www.obofoundry.org/ontology/ogi" + }, + { + "@id": "https://www.obofoundry.org/ontology/bila" + }, + { + "@id": "https://www.obofoundry.org/ontology/po" + }, + { + "@id": "https://www.obofoundry.org/ontology/sep" + }, + { + "@id": "https://www.obofoundry.org/ontology/ipr" + }, + { + "@id": "https://www.obofoundry.org/ontology/xco" + }, + { + "@id": "https://www.obofoundry.org/ontology/pdro" + }, + { + "@id": "https://www.obofoundry.org/ontology/bcgo" + }, + { + "@id": "https://www.obofoundry.org/ontology/t4fs" + }, + { + "@id": "https://www.obofoundry.org/ontology/plo" + }, + { + "@id": "https://www.obofoundry.org/ontology/ogms" + }, + { + "@id": "https://www.obofoundry.org/ontology/duo" + }, + { + "@id": "https://www.obofoundry.org/ontology/tao" + }, + { + "@id": "https://www.obofoundry.org/ontology/ico" + }, + { + "@id": "https://www.obofoundry.org/ontology/upheno" + }, + { + "@id": "https://www.obofoundry.org/ontology/nbo" + }, + { + "@id": "https://www.obofoundry.org/ontology/sepio" + }, + { + "@id": "https://www.obofoundry.org/ontology/kisao" + }, + { + "@id": "https://www.obofoundry.org/ontology/bfo" + }, + { + "@id": "https://www.obofoundry.org/ontology/ehdaa2" + }, + { + "@id": "https://www.obofoundry.org/ontology/nomen" + }, + { + "@id": "https://www.obofoundry.org/ontology/ddanat" + }, + { + "@id": "https://www.obofoundry.org/ontology/mod" + }, + { + "@id": "https://www.obofoundry.org/ontology/bto" + }, + { + "@id": "https://www.obofoundry.org/ontology/apo" + }, + { + "@id": "https://www.obofoundry.org/ontology/xao" + }, + { + "@id": "https://www.obofoundry.org/ontology/fobi" + }, + { + "@id": "https://www.obofoundry.org/ontology/tgma" + }, + { + "@id": "https://www.obofoundry.org/ontology/hsapdv" + }, + { + "@id": "https://www.obofoundry.org/ontology/dinto" + }, + { + "@id": "https://www.obofoundry.org/ontology/eco" + }, + { + "@id": "https://www.obofoundry.org/ontology/foodon" + }, + { + "@id": "https://www.obofoundry.org/ontology/adw" + }, + { + "@id": "https://www.obofoundry.org/ontology/loggerhead" + }, + { + "@id": "https://www.obofoundry.org/ontology/agro" + }, + { + "@id": "https://www.obofoundry.org/ontology/zfa" + }, + { + "@id": "https://www.obofoundry.org/ontology/habronattus" + }, + { + "@id": "https://www.obofoundry.org/ontology/uo" + }, + { + "@id": "https://www.obofoundry.org/ontology/micro" + }, + { + "@id": "https://www.obofoundry.org/ontology/rnao" + }, + { + "@id": "https://www.obofoundry.org/ontology/pd_st" + }, + { + "@id": "https://www.obofoundry.org/ontology/envo" + }, + { + "@id": "https://www.obofoundry.org/ontology/fbbt" + }, + { + "@id": "https://www.obofoundry.org/ontology/iceo" + }, + { + "@id": "https://www.obofoundry.org/ontology/colao" + }, + { + "@id": "https://www.obofoundry.org/ontology/fovt" + }, + { + "@id": "https://www.obofoundry.org/ontology/stato" + }, + { + "@id": "https://www.obofoundry.org/ontology/vt" + }, + { + "@id": "https://www.obofoundry.org/ontology/bootstrep" + }, + { + "@id": "https://www.obofoundry.org/ontology/lipro" + }, + { + "@id": "https://www.obofoundry.org/ontology/iao" + }, + { + "@id": "https://www.obofoundry.org/ontology/cio" + }, + { + "@id": "https://www.obofoundry.org/ontology/mfomd" + }, + { + "@id": "https://www.obofoundry.org/ontology/bspo" + }, + { + "@id": "https://www.obofoundry.org/ontology/opmi" + }, + { + "@id": "https://www.obofoundry.org/ontology/cvdo" + }, + { + "@id": "https://www.obofoundry.org/ontology/dideo" + }, + { + "@id": "https://www.obofoundry.org/ontology/sbo" + }, + { + "@id": "https://www.obofoundry.org/ontology/proco" + }, + { + "@id": "https://www.obofoundry.org/ontology/hso" + }, + { + "@id": "https://www.obofoundry.org/ontology/aro" + }, + { + "@id": "https://www.obofoundry.org/ontology/go" + }, + { + "@id": "https://www.obofoundry.org/ontology/epio" + }, + { + "@id": "https://www.obofoundry.org/ontology/pao" + }, + { + "@id": "https://www.obofoundry.org/ontology/htn" + }, + { + "@id": "https://www.obofoundry.org/ontology/planp" + }, + { + "@id": "https://www.obofoundry.org/ontology/cdao" + }, + { + "@id": "https://www.obofoundry.org/ontology/oarcs" + }, + { + "@id": "https://www.obofoundry.org/ontology/idomal" + }, + { + "@id": "https://www.obofoundry.org/ontology/hancestro" + }, + { + "@id": "https://www.obofoundry.org/ontology/ohmi" + }, + { + "@id": "https://www.obofoundry.org/ontology/dpo" + }, + { + "@id": "https://www.obofoundry.org/ontology/fbbi" + }, + { + "@id": "https://www.obofoundry.org/ontology/wbphenotype" + }, + { + "@id": "https://www.obofoundry.org/ontology/ngbo" + }, + { + "@id": "https://www.obofoundry.org/ontology/cob" + }, + { + "@id": "https://www.obofoundry.org/ontology/cto" + }, + { + "@id": "https://www.obofoundry.org/ontology/trans" + }, + { + "@id": "https://www.obofoundry.org/ontology/mfoem" + }, + { + "@id": "https://www.obofoundry.org/ontology/cmo" + }, + { + "@id": "https://www.obofoundry.org/ontology/wbbt" + }, + { + "@id": "https://www.obofoundry.org/ontology/rex" + }, + { + "@id": "https://www.obofoundry.org/ontology/cheminf" + }, + { + "@id": "https://www.obofoundry.org/ontology/mfo" + }, + { + "@id": "https://www.obofoundry.org/ontology/so" + }, + { + "@id": "https://www.obofoundry.org/ontology/pato" + }, + { + "@id": "https://www.obofoundry.org/ontology/chebi" + }, + { + "@id": "https://www.obofoundry.org/ontology/omrse" + }, + { + "@id": "https://www.obofoundry.org/ontology/zfs" + }, + { + "@id": "https://www.obofoundry.org/ontology/ev" + }, + { + "@id": "https://www.obofoundry.org/ontology/pr" + }, + { + "@id": "https://www.obofoundry.org/ontology/wbls" + }, + { + "@id": "https://www.obofoundry.org/ontology/omiabis" + }, + { + "@id": "https://www.obofoundry.org/ontology/nif_dysfunction" + }, + { + "@id": "https://www.obofoundry.org/ontology/obi" + }, + { + "@id": "https://www.obofoundry.org/ontology/to" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OBO Foundry" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.signalingpathways.org/index.jsf" + "@value": "http://www.obofoundry.org/" }, - "https://bioregistry.io/schema/#0000005": "10.1621/vwN2g2HaX3", - "https://bioregistry.io/schema/#0000006": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1", - "https://bioregistry.io/schema/#0000008": "^10.\\w{4}/\\w{10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6689-0104" + "https://bioregistry.io/schema/#0000005": { + "@value": "CHEBI" }, - "https://bioregistry.io/schema/#0000024": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=10.1621/vwN2g2HaX3" + "https://bioregistry.io/schema/#0000006": { + "@value": "https://www.obofoundry.org/ontology/$1" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "spp" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SYMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/omiabis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "https://bioregistry.io/schema/#0000007": { + "@value": "http://purl.obolibrary.org/obo/$1_$2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" } }, { - "@id": "http://edamontology.org/data_3274", + "@id": "https://registry.bio2kg.org/resource/rs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://edamontology.org/data_1181", + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/fbtc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The cell line vocabulary inside FlyBase", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/flybase" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Flybase Cell Line" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://flybase.org" - }, - "https://bioregistry.io/schema/#0000005": "0000190", - "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/FBtc$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "FlyBase_Cell_line" - }, - "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/FBtc", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://flybase.org/reports/FBtc0000190" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fbtc" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed", + "@id": "https://www.re3data.org/repository/r3d100010975", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/ero", + "@id": "https://bioregistry.io/registry/mdm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.", + "http://purl.org/dc/terms/description": "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eagle-i resource ontology" + "@value": "Medical Data Models" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ERO" + "@id": "https://fairsharing.org/FAIRsharing.wnk2eq" }, { - "@id": "http://aber-owl.net/ontology/ERO" + "@id": "https://registry.identifiers.org/registry/mdm" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero" + "@id": "http://aber-owl.net/ontology/MDM" }, { - "@id": "https://www.obofoundry.org/ontology/ero" + "@id": "https://bioportal.bioontology.org/ontologies/MDM" }, { - "@id": "http://www.ontobee.org/ontology/ERO" + "@id": "https://www.re3data.org/repository/r3d100013816" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm" }, { - "@id": "https://fairsharing.org/FAIRsharing.nwgynk" + "@id": "https://bioregistry.io/metaregistry/biocontext/MDM" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "medicine" }, { - "@value": "ontology" + "@value": "translational medicine" }, { "@value": "biomedical science" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology" + "@id": "https://medical-data-models.org/" }, - "https://bioregistry.io/schema/#0000005": "0001655", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ERO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "4776", + "https://bioregistry.io/schema/#0000006": "https://medical-data-models.org/forms/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ero.owl" + "@id": "http://aber-owl.net/media/ontologies/MDM/4/mdm.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3734-1859" + "@id": "https://orcid.org/0000-0003-3062-8192" + }, + "https://bioregistry.io/schema/#0000024": "https://medical-data-models.org/forms/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://medical-data-models.org/forms/4776" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ERO_", "https://bioregistry.io/schema/#0000029": { - "@value": "ero" + "@value": "mdm" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qnkw45", + "@id": "https://bartoc.org/en/node/571", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/drduke", + "@id": "https://www.re3data.org/repository/r3d100011373", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/adcad", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for chemicals linked to information on occurrence in plants", + "http://purl.org/dc/terms/description": "An ontology to support disciplinary annotation of Arctic Data Center datasets.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/NCEAS/adc-disciplines" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" + "@value": "Arctic Data Center Academic Disciplines Ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P10074" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/ADCAD" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ADCAD" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://phytochem.nal.usda.gov/phytochem/search/list" + "@id": "https://arcticdata.io/" + }, + "https://bioregistry.io/schema/#0000005": "00000", + "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/ADCAD_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ADCAD/1/adcad.owl" }, - "https://bioregistry.io/schema/#0000005": "19", - "https://bioregistry.io/schema/#0000006": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0381-3766" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/ADCAD_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/19" + "@id": "https://purl.dataone.org/odo/ADCAD_00000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drduke" + "@value": "adcad" } }, { - "@id": "http://www.wikidata.org/entity/P2063", + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mediadive.medium", + "@id": "https://bioregistry.io/registry/limore", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MediaDive Medium" + "@value": "Liver Cancer Model Repository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mediadive.dsmz.de/media" + "@id": "https://www.picb.ac.cn/limore/home" }, - "https://bioregistry.io/schema/#0000005": "77", - "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/medium/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+\\w?$", + "https://bioregistry.io/schema/#0000005": "Li7", + "https://bioregistry.io/schema/#0000006": "https://www.picb.ac.cn/limore/cellLines/single?para=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3909-7201" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/medium/", + "https://bioregistry.io/schema/#0000024": "https://www.picb.ac.cn/limore/cellLines/single?para=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mediadive.dsmz.de/medium/77" + "@id": "https://www.picb.ac.cn/limore/cellLines/single?para=Li7" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mediadive.medium" + "@value": "limore" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2gpf81", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MA", + "@id": "http://edamontology.org/data_2616", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://aber-owl.net/ontology/T4FS", + "@id": "https://registry.bio2kg.org/resource/matrixdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/uniprot.location", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/uniprot" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Subcellular Locations" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/locations/" - }, - "https://bioregistry.io/schema/#0000005": "SL-0002", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/locations/$1", - "https://bioregistry.io/schema/#0000008": "^SL-\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://rest.uniprot.org/locations/stream?compressed=true&format=obo&query=%28%2A%29" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "UniProtKB-SubCell" - }, - { - "@value": "UPLOC" - }, - { - "@value": "SP_SL" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/locations/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/locations/SL-0002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.location" + "@id": "https://cropontology.org/ontology/CO_324", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/fairsharing", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/fairsharing.organization" - }, - { - "@id": "https://bioregistry.io/registry/srao" - }, - { - "@id": "https://bioregistry.io/registry/fairsharing.user" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FAIRsharing" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIRsharing" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING" - }, - { - "@id": "https://registry.identifiers.org/registry/fairsharing" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2abjs5" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010142" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "database management" - }, - { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, - { - "@value": "natural science" - }, - { - "@value": "environmental science" - }, - { - "@value": "ontology and terminology" - }, - { - "@value": "data governance" - }, - { - "@value": "agriculture" - }, - { - "@value": "policy" - }, - { - "@value": "humanities" - }, - { - "@value": "earth science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fairsharing.org/" - }, - "https://bioregistry.io/schema/#0000005": "bsg-000052", - "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/$1", - "https://bioregistry.io/schema/#0000008": "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" - }, - "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://fairsharing.org/bsg-000052" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/omp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of phenotypes covering microbes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/microbialphenotypes/OMP-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Microbial Phenotypes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.cc3f2x" - }, - { - "@id": "http://aber-owl.net/ontology/OMP" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp" - }, - { - "@id": "http://www.ontobee.org/ontology/OMP" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMP" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMP" - }, - { - "@id": "https://www.obofoundry.org/ontology/omp" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "microbiology" - }, - { - "@value": "data mining" - }, - { - "@value": "biology" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://microbialphenotypes.org" - }, - "https://bioregistry.io/schema/#0000005": "0005067", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/omp.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mco" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9016-2684" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OMP_0005067" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "omp" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011052", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/atcvet", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.", + "@id": "https://www.uniprot.org/database/DB-0149", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anatomical Therapeutic Chemical Vetinary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET" - }, - { - "@id": "https://registry.identifiers.org/registry/atcvet" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.whocc.no/atcvet/atcvet_index/" - }, - "https://bioregistry.io/schema/#0000005": "QJ51RV02", - "https://bioregistry.io/schema/#0000006": "http://www.whocc.no/atcvet/atcvet_index/?code=$1", - "https://bioregistry.io/schema/#0000008": "^Q[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.whocc.no/atcvet/atcvet_index/?code=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.whocc.no/atcvet/atcvet_index/?code=QJ51RV02" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "atcvet" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PDRO", + "@id": "https://bioportal.bioontology.org/ontologies/FOBI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://orcid.org/0000-0001-9921-8234", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Georgeta Bordea" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "georgeta.bordea@u-bordeaux.fr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_321", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/xsd", + "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ega.study", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Genome-phenome Archive Study" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/ega.study" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/ega/studies" - }, - "https://bioregistry.io/schema/#0000005": "EGAS00000000001", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ega/studies/$1", - "https://bioregistry.io/schema/#0000008": "^EGAS\\d{11}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ega/studies/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ega/studies/EGAS00000000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ega.study" - } - }, - { - "@id": "https://registry.identifiers.org/registry/protclustdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase", + "@id": "https://www.re3data.org/repository/r3d100013413", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://aber-owl.net/ontology/PO", + "@id": "http://aber-owl.net/ontology/MFMO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/taxrank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010804", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC", + "@id": "https://registry.identifiers.org/registry/allergome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE", + "@id": "http://aber-owl.net/ontology/GSSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam", + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/nasc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/intact.molecule", + "@id": "https://registry.identifiers.org/registry/pmap.cutdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/comptox", + "@id": "https://bioregistry.io/registry/probesanddrugs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.", + "http://purl.org/dc/terms/description": "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DSSTox substance" + "@value": "Probes and Drugs" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P11199" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX" - }, - { - "@id": "https://registry.identifiers.org/registry/comptox" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox" - }, - { - "@id": "http://www.wikidata.org/entity/P3117" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://comptox.epa.gov/dashboard" + "@id": "https://www.probes-drugs.org" }, - "https://bioregistry.io/schema/#0000005": "DTXSID2021028", - "https://bioregistry.io/schema/#0000006": "https://comptox.epa.gov/dashboard/$1", - "https://bioregistry.io/schema/#0000008": "^DTXSID\\d+$", + "https://bioregistry.io/schema/#0000005": "PD000596", + "https://bioregistry.io/schema/#0000006": "https://www.probes-drugs.org/compound/$1", + "https://bioregistry.io/schema/#0000008": "^PD\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://comptox.epa.gov/dashboard/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5325-4934" + }, + "https://bioregistry.io/schema/#0000024": "https://www.probes-drugs.org/compound/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://comptox.epa.gov/dashboard/DTXSID2021028" + "@id": "https://www.probes-drugs.org/compound/PD000596" }, "https://bioregistry.io/schema/#0000029": { - "@value": "comptox" + "@value": "probesanddrugs" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/KISAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://orcid.org/0000-0003-4606-0597", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sue Bello" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "drsbello@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO", + "@id": "https://www.uniprot.org/database/DB-0052", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/aop.events", + "@id": "https://bioregistry.io/registry/genewiki", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", + "http://purl.org/dc/terms/description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AOPWiki (Key Event)" + "@value": "Gene Wiki" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events" + "@id": "https://fairsharing.org/FAIRsharing.t3snf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki" }, { - "@id": "https://registry.identifiers.org/registry/aop.events" + "@id": "https://registry.identifiers.org/registry/genewiki" + }, + { + "@id": "https://www.uniprot.org/database/DB-0180" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "genetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://aopwiki.org/" + "@id": "http://en.wikipedia.org/wiki/Gene_Wiki" }, - "https://bioregistry.io/schema/#0000005": "3", - "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/events/$1", + "https://bioregistry.io/schema/#0000005": "1017", + "https://bioregistry.io/schema/#0000006": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbigene" + }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/events/", + "https://bioregistry.io/schema/#0000024": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://aopwiki.org/events/3" + "@id": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=1017" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aop.events" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SASAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_326", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cog", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/peptideatlas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "genewiki" } }, { - "@id": "https://bioregistry.io/registry/maxo", + "@id": "https://bioregistry.io/registry/doid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.", + "http://purl.org/dc/terms/description": "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/MAxO" + "@id": "https://github.com/DiseaseOntology/HumanDiseaseOntology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medical Action Ontology" + "@value": "Human Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo" + "@id": "http://www.ontobee.org/ontology/DOID" }, { - "@id": "http://www.ontobee.org/ontology/MAXO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid" }, { - "@id": "http://aber-owl.net/ontology/MAXO" + "@id": "http://www.wikidata.org/entity/P699" }, { - "@id": "https://fairsharing.org/FAIRsharing.945c78" + "@id": "https://bartoc.org/en/node/576" }, { - "@id": "https://www.obofoundry.org/ontology/maxo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAXO" + "@id": "https://www.obofoundry.org/ontology/doid" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO" + "@id": "https://registry.bio2kg.org/resource/do" }, { - "@id": "https://registry.identifiers.org/registry/maxo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioportal.bioontology.org/ontologies/DOID" + }, { - "@value": "medicine" + "@id": "https://registry.identifiers.org/registry/doid" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.8b6wfq" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/DOID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DOID" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/monarch-initiative/MAxO" - }, - "https://bioregistry.io/schema/#0000005": "0000008", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAXO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/maxo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/nbo" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/uberon" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/go" + "@value": "disease" }, { - "@id": "https://bioregistry.io/registry/ro" + "@value": "human" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/iao" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/hp" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.disease-ontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0110974", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DOID_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/doid.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/obi" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/registry/clo" } ], - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/ecto" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7941-2961" + "@id": "https://orcid.org/0000-0001-8910-9851" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAXO_", + "https://bioregistry.io/schema/#0000023": { + "@value": "do" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DOID_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MAXO_0000008" + "@id": "http://purl.obolibrary.org/obo/DOID_0110974" }, "https://bioregistry.io/schema/#0000029": { - "@value": "maxo" + "@value": "doid" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam", + "@id": "https://www.re3data.org/repository/r3d100012517", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0003-4606-0597", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sue Bello" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "drsbello@gmail.com" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.re3data.org/repository/r3d100012630", + "@id": "http://www.wikidata.org/entity/P305", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.62qk8w", + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wpxab1", + "@id": "https://bioportal.bioontology.org/ontologies/EDAM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.wikidata.org/entity/P3951", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://orcid.org/0000-0001-6689-0104", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Neil McKenna" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nmckenna@bcm.edu" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3e88d6", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/facebase", + "@id": "https://bioregistry.io/registry/ev", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.", + "http://purl.org/dc/terms/description": "Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FaceBase Data Repository" + "@value": "eVOC (Expressed Sequence Annotation for Humans)" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.mqvqde" - }, - { - "@id": "https://registry.identifiers.org/registry/facebase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase" + "@id": "https://registry.bio2kg.org/resource/evoc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE" + "@id": "https://bioregistry.io/metaregistry/biocontext/EV" }, { - "@id": "https://www.re3data.org/repository/r3d100013263" + "@id": "https://www.obofoundry.org/ontology/ev" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "epigenetics" + "@value": "cell" }, { - "@value": "medicine" + "@value": "ontology" }, { - "@value": "developmental biology" + "@value": "anatomy" }, { - "@value": "anatomy" + "@value": "obo" }, { - "@value": "genetics" + "@value": "experiment" + }, + { + "@value": "development" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.facebase.org" + "@id": "http://www.evocontology.org/" }, - "https://bioregistry.io/schema/#0000005": "FB00000917", - "https://bioregistry.io/schema/#0000006": "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1", - "https://bioregistry.io/schema/#0000008": "^FB\\d{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.facebase.org/data/record/#1/isa:dataset/accession=", + "https://bioregistry.io/schema/#0000005": "EV_0100011", + "https://bioregistry.io/schema/#0000006": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/cl" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nfd4722f4f2fc4fdb85afda178e8669b4" + }, + "https://bioregistry.io/schema/#0000024": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.facebase.org/data/record/#1/isa:dataset/accession=FB00000917" + "@id": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=EV_0100011" }, "https://bioregistry.io/schema/#0000029": { - "@value": "facebase" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_365", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ogi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "ev" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "_:Nfd4722f4f2fc4fdb85afda178e8669b4", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "eVOC mailing list" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "evoc@sanbi.ac.za" } }, { - "@id": "https://bioregistry.io/registry/mat", + "@id": "https://bioregistry.io/registry/bao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Minimal set of terms for anatomy", + "http://purl.org/dc/terms/description": "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BioAssayOntology/BAO/wiki" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimal Anatomical Terminology" + "@value": "BioAssay Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/MAT" + "@id": "https://registry.identifiers.org/registry/bao" }, { - "@id": "http://aber-owl.net/ontology/MAT" + "@id": "https://fairsharing.org/FAIRsharing.mye76w" }, { - "@id": "https://www.obofoundry.org/ontology/mat" + "@id": "http://www.ontobee.org/ontology/BAO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAT" + "@id": "https://bioportal.bioontology.org/ontologies/BAO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BAO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao" + }, + { + "@id": "http://aber-owl.net/ontology/BAO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "biochemistry" + }, + { + "@value": "biomedical science" }, { "@value": "ontology" + }, + { + "@value": "life science" } ], - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAT_$1", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioassayontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0002989", + "https://bioregistry.io/schema/#0000006": "http://www.bioassayontology.org/bao#BAO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/MAT/3/mat.obo" + "@id": "http://www.bioassayontology.org/bao/bao_complete.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N4e049b627b3a4edaa7e72a9425ccc457" + "@id": "_:Ndd908229bd3749e79cfbb01b1a38ec97" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "BAO" + }, + "https://bioregistry.io/schema/#0000024": "http://www.bioassayontology.org/bao#BAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bioassayontology.org/bao#BAO_0002989" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAT_", "https://bioregistry.io/schema/#0000029": { - "@value": "mat" + "@value": "bao" } }, { - "@id": "_:N4e049b627b3a4edaa7e72a9425ccc457", + "@id": "_:Ndd908229bd3749e79cfbb01b1a38ec97", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Bard" + "@value": "Stephan Schurer" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "j.bard@ed.ac.uk" + "@value": "sschurer@med.miami.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER", + "@id": "https://www.obofoundry.org/ontology/tads", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0001-8941-3984", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alayne Cuzick" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "alayne.cuzick@rothamsted.ac.uk" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.hFLKCn", + "@id": "https://bioregistry.io/metaregistry/biocontext/void", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BTO", + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo", + "@id": "https://registry.bio2kg.org/resource/propreo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5p12xh", + "@id": "https://registry.bio2kg.org/resource/clo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-8397-8810", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clair Kronk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kronkcj@mail.uc.edu" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus", + "@id": "https://www.re3data.org/repository/r3d100012755", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/unirule", + "@id": "https://bioregistry.io/registry/epcc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites.", + "http://purl.org/dc/terms/description": "Collection of European paediatric cardiac coding files", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniRule" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule" + "@value": "European Paediatric Cardiac Codes" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/unirule/" + "@id": "https://www.aepc.org/european-paediatric-cardiac-coding" }, - "https://bioregistry.io/schema/#0000005": "UR000124451", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/unirule/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/unirule/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/unirule/UR000124451" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "unirule" + "@value": "epcc" } }, { - "@id": "https://www.obofoundry.org/ontology/tads", + "@id": "https://registry.bio2kg.org/resource/mmmp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/microscope", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.", + "@id": "https://bioportal.bioontology.org/ontologies/VANDF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MicroScope" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gf8yhy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/umbbd.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE" - }, + "@id": "https://bioregistry.io/registry/umbbd" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UM-BBD compound" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100012928" + "@id": "http://www.wikidata.org/entity/P8121" }, { - "@id": "https://registry.identifiers.org/registry/microscope" + "@id": "https://registry.identifiers.org/registry/umbbd.compound" }, { - "@id": "https://fairsharing.org/FAIRsharing.3t5qc3" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound" }, { - "@value": "comparative genomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genoscope.cns.fr/agc/microscope" + "@id": "http://umbbd.ethz.ch/" }, - "https://bioregistry.io/schema/#0000005": "5601141", - "https://bioregistry.io/schema/#0000006": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "c0001", + "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1", + "https://bioregistry.io/schema/#0000008": "^c\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=", + "https://bioregistry.io/schema/#0000023": { + "@value": "UM-BBD_compID" + }, + "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=5601141" + "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=c0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "microscope" + "@value": "umbbd.compound" } }, { - "@id": "https://orcid.org/0000-0001-8135-3489", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lars Holm Nielsen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "lars.holm.nielsen@cern.ch" + "@id": "https://fairsharing.org/FAIRsharing.b9znd5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.eeyne8", + "@id": "https://fairsharing.org/FAIRsharing.945c78", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA", + "@id": "https://fairsharing.org/FAIRsharing.4ndncv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb", + "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA", + "@id": "https://registry.identifiers.org/registry/caps", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi", + "@id": "https://bioregistry.io/registry/iso15926", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ISO 15926-14" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://15926.org/home/" + }, + "https://bioregistry.io/schema/#0000005": "activityBoundOf", + "https://bioregistry.io/schema/#0000006": "http://standards.iso.org/iso/15926/part14/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://standards.iso.org/iso/15926/part14/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://standards.iso.org/iso/15926/part14/activityBoundOf" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iso15926" } }, { - "@id": "https://registry.bio2kg.org/resource/go", + "@id": "https://fairsharing.org/FAIRsharing.e7skwg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://cropontology.org/ontology/CO_336", + "@id": "https://bioportal.bioontology.org/ontologies/EUPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/dictybase.est", + "@id": "https://bioregistry.io/registry/dandi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/dictybase" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/dandi/dandiarchive" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "dictyBase Expressed Sequence Tag" + "@value": "Distributed Archives for Neurophysiology Data Integration" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST" + "@id": "https://registry.identifiers.org/registry/dandi" }, { - "@id": "https://registry.identifiers.org/registry/dictybase.est" + "@id": "https://fairsharing.org/FAIRsharing.f2c119" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est" + "@id": "https://www.re3data.org/repository/r3d100013638" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "neurophysiology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dictybase.org/" + "@id": "https://dandiarchive.org/" }, - "https://bioregistry.io/schema/#0000005": "DDB0016567", - "https://bioregistry.io/schema/#0000006": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1", - "https://bioregistry.io/schema/#0000008": "^DDB\\d+$", + "https://bioregistry.io/schema/#0000005": "000017", + "https://bioregistry.io/schema/#0000006": "https://dandiarchive.org/dandiset/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3456-2493" + }, + "https://bioregistry.io/schema/#0000024": "https://dandiarchive.org/dandiset/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=DDB0016567" + "@id": "https://dandiarchive.org/dandiset/000017" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dictybase.est" + "@value": "dandi" } }, { - "@id": "https://bioregistry.io/registry/arrayexpress.platform", + "@id": "https://bioregistry.io/registry/kegg.disease", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/kegg" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ArrayExpress Platform" + "@value": "KEGG Disease" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM" + "@id": "https://registry.identifiers.org/registry/kegg.disease" }, { - "@id": "https://registry.identifiers.org/registry/arrayexpress.platform" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform" + "@id": "https://registry.bio2kg.org/resource/kegg.disease" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "classification" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/arrayexpress/" + "@id": "http://www.genome.jp/kegg/disease/" }, - "https://bioregistry.io/schema/#0000005": "A-GEOD-50", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/arrayexpress/arrays/$1", - "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", + "https://bioregistry.io/schema/#0000005": "H00076", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^H\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/arrayexpress/arrays/", + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/arrayexpress/arrays/A-GEOD-50" + "@id": "http://www.kegg.jp/entry/H00076" }, "https://bioregistry.io/schema/#0000029": { - "@value": "arrayexpress.platform" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TXPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/myco.lepra", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "kegg.disease" } }, { - "@id": "https://registry.bio2kg.org/resource/sbo", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction", + "@id": "https://bioregistry.io/registry/ark", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/ZEA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A modeling paradigm-specific registry of prefixes and their URL expansions" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Archival Resource Key" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARK" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema" + "@id": "https://registry.identifiers.org/registry/ark" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv" - }, + "@id": "https://fairsharing.org/FAIRsharing.f928f1" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf" + "@value": "data management" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase" + "@value": "subject agnostic" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biolink Model Registry" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://github.com/biolink/biolink-model" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "doi" + "@id": "https://arks.org" }, + "https://bioregistry.io/schema/#0000005": "/53355/cl010066723", + "https://bioregistry.io/schema/#0000006": "http://n2t.net/ark:$1", + "https://bioregistry.io/schema/#0000008": "^/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3583-7340" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-7604-8041" + }, + "https://bioregistry.io/schema/#0000024": "http://n2t.net/ark:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://n2t.net/ark:/53355/cl010066723" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ark" } }, { - "@id": "https://registry.bio2kg.org/resource/genage", + "@id": "https://registry.bio2kg.org/resource/sep", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/funcbase.yeast", + "@id": "https://bioregistry.io/registry/dragondb.locus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/dragondb" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FuncBase Yeast" + "@value": "DragonDB Locus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.yeast" + "@id": "https://registry.identifiers.org/registry/dragondb.locus" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://func.mshri.on.ca/yeast" + "@id": "http://www.antirrhinum.net/" }, - "https://bioregistry.io/schema/#0000005": "2701", - "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/", + "https://bioregistry.io/schema/#0000005": "DEF", + "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.locus:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/2701" + "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=DEF&class=Locus" }, "https://bioregistry.io/schema/#0000029": { - "@value": "funcbase.yeast" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pubchem.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://edamontology.org/data_2719", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/unite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "dragondb.locus" } }, { - "@id": "http://www.wikidata.org/entity/P233", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://cropontology.org/ontology/CO_345", + "@id": "https://bioportal.bioontology.org/ontologies/ARO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.wikidata.org/entity/P356", + "@id": "https://bioregistry.io/registry/nemo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Neuroscience Multi-Omic BRAIN Initiative Data" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/nemo" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nemoarchive.org" + }, + "https://bioregistry.io/schema/#0000005": "smp-m3w9hbe", + "https://bioregistry.io/schema/#0000006": "https://assets.nemoarchive.org/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]{3}-[a-km-z0-9]{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://assets.nemoarchive.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://assets.nemoarchive.org/smp-m3w9hbe" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nemo" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mzc066", + "@id": "http://aber-owl.net/ontology/AERO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/idoo", + "@id": "https://registry.identifiers.org/registry/imex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/huge", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d05nwx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://www.ontobee.org/ontology/TAXRANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.63m4ss", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3b36hk", + "@id": "https://www.obofoundry.org/ontology/ico", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/mipmod", + "@id": "https://bioregistry.io/registry/ega.dataset", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.", + "http://purl.org/dc/terms/description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MIPModDB" + "@value": "European Genome-phenome Archive Dataset" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/mipmod" + "@id": "https://www.re3data.org/repository/r3d100011242" }, { - "@id": "https://registry.identifiers.org/registry/mipmod" + "@id": "https://registry.identifiers.org/registry/ega.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod" + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD" + "@id": "https://fairsharing.org/FAIRsharing.mya1ff" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" + "@value": "biology" }, { - "@value": "protein" + "@value": "phenomics" + }, + { + "@value": "genomics" + }, + { + "@value": "biomedical science" + }, + { + "@value": "clinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinfo.iitk.ac.in/MIPModDB" + "@id": "https://ega-archive.org/" }, - "https://bioregistry.io/schema/#0000005": "HOSAPI0399", - "https://bioregistry.io/schema/#0000006": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "EGAD00000000001", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ega/datasets/$1", + "https://bioregistry.io/schema/#0000008": "^EGAD\\d{11}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ega/datasets/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=HOSAPI0399" + "@id": "https://www.ebi.ac.uk/ega/datasets/EGAD00000000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mipmod" + "@value": "ega.dataset" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://aber-owl.net/ontology/OBA", + "@id": "https://registry.identifiers.org/registry/clo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/uspto", + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/venom", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.", + "http://purl.org/dc/terms/description": "The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "United States Patent and Trademark Office" + "@value": "Veterinary Nomenclature" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://venomcoding.org/" + }, + "https://bioregistry.io/schema/#0000005": "12969", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/vbo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5628-4194" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "venom" + } + }, + { + "@id": "https://bioregistry.io/registry/dictybase.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/dictybase" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dictybase Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/uspto" + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto" + "@id": "https://registry.identifiers.org/registry/dictybase.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://patft.uspto.gov/netahtml/PTO/index.html" + "@id": "http://dictybase.org/" }, - "https://bioregistry.io/schema/#0000005": "4145692", - "https://bioregistry.io/schema/#0000006": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1", - "https://bioregistry.io/schema/#0000008": "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$", + "https://bioregistry.io/schema/#0000005": "DDB_G0267522", + "https://bioregistry.io/schema/#0000006": "http://dictybase.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^DDB_G\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/", + "https://bioregistry.io/schema/#0000024": "http://dictybase.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/4145692" + "@id": "http://dictybase.org/gene/DDB_G0267522" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uspto" + "@value": "dictybase.gene" } }, { - "@id": "https://bioregistry.io/registry/pao", + "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/VTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5701h1", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/soybase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1153", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/registry/metanetx.chemical", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Anatomy Ontology" + "@value": "MetaNetX chemical" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical" }, { - "@id": "https://www.obofoundry.org/ontology/pao" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/metanetx.chemical" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.plantontology.org" + "@id": "https://www.metanetx.org/" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PAO_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1005-8383" + "https://bioregistry.io/schema/#0000005": "MNXM1723", + "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/chem_info/$1", + "https://bioregistry.io/schema/#0000008": "^(MNXM\\d+|BIOMASS|WATER)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/chem_info/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.metanetx.org/chem_info/MNXM1723" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "pao" + "@value": "metanetx.chemical" } }, { - "@id": "https://bioregistry.io/registry/nextprot.family", + "@id": "https://bioregistry.io/registry/msigdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)", + "http://purl.org/dc/terms/description": "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "neXtProt family" + "@value": "Molecular Signatures Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nextprot.org/" + "@id": "https://www.gsea-msigdb.org" }, - "https://bioregistry.io/schema/#0000005": "01406", - "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/term/FA-$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "M1", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/msigdb/$1", + "https://bioregistry.io/schema/#0000008": "^M\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "NXPFA" + "@value": "msig" }, - "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/term/FA-", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/msigdb/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.nextprot.org/term/FA-01406" + "@id": "https://biopragmatics.github.io/providers/msigdb/M1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nextprot.family" + "@value": "msigdb" } }, { - "@id": "https://orcid.org/0000-0002-5705-5710", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/gear" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Joshua Orvis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jorvis@gmail.com" + "@id": "http://www.ontobee.org/ontology/AEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIAPA", + "@id": "https://registry.identifiers.org/registry/worfdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/UPHENO", + "@id": "https://www.obofoundry.org/ontology/uo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/emapa", + "@id": "https://bioregistry.io/registry/pmdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.", + "http://purl.org/dc/terms/description": "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Developmental Anatomy Ontology" + "@value": "Protein Model Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j0fa1d" - }, - { - "@id": "http://www.ontobee.org/ontology/EMAPA" - }, - { - "@id": "https://www.obofoundry.org/ontology/emapa" - }, - { - "@id": "https://bartoc.org/en/node/549" + "@id": "https://registry.bio2kg.org/resource/pmdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa" + "@id": "https://fairsharing.org/FAIRsharing.wkaakq" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EMAPA" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB" }, { - "@id": "http://aber-owl.net/ontology/EMAPA" + "@id": "https://registry.identifiers.org/registry/pmdb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "protein" }, { - "@value": "anatomy" + "@value": "structural biology" }, { - "@value": "developmental biology" + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.informatics.jax.org/expression.shtml" - }, - "https://bioregistry.io/schema/#0000005": "26753", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EMAPA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/emapa.owl" + "@id": "https://bioinformatics.cineca.it/PMDB/" }, + "https://bioregistry.io/schema/#0000005": "PM0012345", + "https://bioregistry.io/schema/#0000006": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1", + "https://bioregistry.io/schema/#0000008": "^PM\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0956-8634" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "EMAPA_RETIRED" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EMAPA_", + "https://bioregistry.io/schema/#0000024": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/EMAPA_26753" + "@id": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=PM0012345" }, "https://bioregistry.io/schema/#0000029": { - "@value": "emapa" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0236", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@value": "pmdb" } }, { - "@id": "https://bioregistry.io/registry/phenx", + "@id": "https://bioregistry.io/registry/idomal", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants.", + "http://purl.org/dc/terms/description": "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VEuPathDB-ontology/IDOMAL" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhenX Toolkit" + "@value": "Malaria Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PHENX" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL" }, { - "@id": "https://fairsharing.org/FAIRsharing.y5jcwa" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal" }, { - "@id": "http://aber-owl.net/ontology/PHENX" + "@id": "https://fairsharing.org/FAIRsharing.2q8c28" + }, + { + "@id": "http://www.ontobee.org/ontology/IDOMAL" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL" + }, + { + "@id": "http://aber-owl.net/ontology/IDOMAL" + }, + { + "@id": "https://www.obofoundry.org/ontology/idomal" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "biomedical science" }, { - "@value": "biomedical science" + "@value": "ontology" }, { "@value": "life science" }, { - "@value": "environmental science" + "@value": "molecular infection biology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.phenxtoolkit.org/" + "@id": "https://www.vectorbase.org/ontology-browser" }, - "https://bioregistry.io/schema/#0000005": "130502", - "https://bioregistry.io/schema/#0000006": "https://www.phenxtoolkit.org/protocols/view/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0002350", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IDOMAL_$1", + "https://bioregistry.io/schema/#0000008": "^(5?)\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/PHENX/16/phenx.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N324112f3c63245ab8f6b46586714a1c9" + "@id": "http://purl.obolibrary.org/obo/idomal.owl" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "phenxtoolkit" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" }, - "https://bioregistry.io/schema/#0000024": "https://www.phenxtoolkit.org/protocols/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.phenxtoolkit.org/protocols/view/130502" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1635-4810" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IDOMAL_", "https://bioregistry.io/schema/#0000029": { - "@value": "phenx" + "@value": "idomal" } }, { - "@id": "_:N324112f3c63245ab8f6b46586714a1c9", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhenX Admin" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "yingqin@rti.org" + "@id": "https://registry.bio2kg.org/resource/nasc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/come", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif.", + "@id": "http://aber-owl.net/ontology/T4FS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Bioinorganic Motif Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/come" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.flymine.org/come" - }, - "https://bioregistry.io/schema/#0000005": "MOL000160", - "https://bioregistry.io/schema/#0000006": "https://www.flymine.org/come/entry?gn=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.flymine.org/come/entry?gn=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.flymine.org/come/entry?gn=MOL000160" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "come" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/assembly", + "@id": "https://bioportal.bioontology.org/ontologies/XCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NMR", + "@id": "http://www.wikidata.org/entity/P494", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/lincs.smallmolecule", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-9922-9723", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LINCS Small Molecule" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lincsportal.ccs.miami.edu/SmallMolecules/" - }, - "https://bioregistry.io/schema/#0000005": "LSM-6306", - "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1", - "https://bioregistry.io/schema/#0000008": "^LSM-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "lincs" - }, - "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/LSM-6306" + "@value": "Yiming Bao" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lincs.smallmolecule" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "baoym@big.ac.cn" } }, { - "@id": "https://registry.bio2kg.org/resource/hmdb", + "@id": "https://fairsharing.org/FAIRsharing.c7f4d7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/esldb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions.", + "@id": "https://registry.bio2kg.org/resource/hssp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eukaryotic Subcellular Localization database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/esldb" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gpcr.biocomp.unibo.it/esldb" - }, - "https://bioregistry.io/schema/#0000005": "HS000015122", - "https://bioregistry.io/schema/#0000006": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=HS000015122" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "esldb" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/hpath", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Novartis/hpath" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Histopathology Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kj336a" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "taxonomy" - }, - { - "@value": "microbiology" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Novartis/hpath" - }, - "https://bioregistry.io/schema/#0000005": "2000191", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MC_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MC" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MC_2000191" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hpath" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/chemdb", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/shibase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format.", + "@id": "https://www.re3data.org/repository/r3d100010669", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ShiBASE" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/shibase" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mgc.ac.cn/ShiBASE/" - }, - "https://bioregistry.io/schema/#0000005": "SDY2614", - "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=SDY2614" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "shibase" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/gold", + "@id": "https://registry.bio2kg.org/resource/chebi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://cropontology.org/ontology/CO_330", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound", + "@id": "https://orcid.org/0000-0001-5530-0017", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Milton H. Saier, Jr." + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "msaier@ucsd.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PINA", + "@id": "http://www.wikidata.org/entity/P5501", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/ascl", + "@id": "http://aber-owl.net/ontology/ECOCORE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/bykdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P3811", + "@id": "http://aber-owl.net/ontology/SAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/cdd", + "@id": "https://registry.identifiers.org/registry/iuphar.receptor", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/mesh.2013", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dsm4", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.", + "http://purl.org/dc/terms/description": "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MeSH 2013" + "@value": "Diagnostic and Statistical Manual of Mental Disorders (4th Edition)" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013" - }, - { - "@id": "https://registry.identifiers.org/registry/mesh.2013" + "@id": "http://www.wikidata.org/entity/P663" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nlm.nih.gov/mesh/" - }, - "https://bioregistry.io/schema/#0000005": "17165", - "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/mesh" + "@id": "https://en.wikipedia.org/wiki/Diagnostic_and_Statistical_Manual_of_Mental_Disorders#DSM-IV-TR_(2000)" }, + "https://bioregistry.io/schema/#0000005": "315.1", + "https://bioregistry.io/schema/#0000008": "^\\d+\\.\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mesh.2013:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=17165&view=expanded" + "https://bioregistry.io/schema/#0000023": { + "@value": "dsm-iv" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mesh.2013" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "dsm4" } }, { - "@id": "https://bioregistry.io/registry/glyconavi", + "@id": "https://bioregistry.io/registry/apo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://glyconavi.github.io/doc/" + "@id": "https://github.com/obophenotype/ascomycete-phenotype-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlycoNAVI" + "@value": "Ascomycete phenotype ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.wvp1t7" + "@id": "https://bioregistry.io/metaregistry/biocontext/APO" }, { - "@id": "https://registry.identifiers.org/registry/glyconavi" + "@id": "https://fairsharing.org/FAIRsharing.dyqz3y" + }, + { + "@id": "https://www.obofoundry.org/ontology/apo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/APO" + }, + { + "@id": "http://www.ontobee.org/ontology/APO" + }, + { + "@id": "http://aber-owl.net/ontology/APO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "chemistry" + "@value": "obo" }, { - "@value": "glycomics" + "@value": "cell biology" }, { - "@value": "organic chemistry" + "@value": "ontology" }, { "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.noguchi.or.jp/" + "@id": "http://www.yeastgenome.org/" + }, + "https://bioregistry.io/schema/#0000005": "0000184", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/APO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/apo.owl" }, - "https://bioregistry.io/schema/#0000005": "GN_G03681DA", - "https://bioregistry.io/schema/#0000006": "https://glyconavi.org/hub/?id=$1", - "https://bioregistry.io/schema/#0000008": "^GN_[A-Za-z0-9_:]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9504-189X" + "@id": "https://orcid.org/0000-0001-5472-917X" }, - "https://bioregistry.io/schema/#0000024": "https://glyconavi.org/hub/?id=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/APO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://glyconavi.org/hub/?id=GN_G03681DA" + "@id": "http://purl.obolibrary.org/obo/APO_0000184" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glyconavi" + "@value": "apo" } }, { - "@id": "https://registry.identifiers.org/registry/ligandexpo", + "@id": "https://orcid.org/0000-0002-9134-5404", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Patrice Buche" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "patrice.buche@inrae.fr" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wx5r6f", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://fairsharing.org/FAIRsharing.g78mbm", + "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.xz5m1a", + "@id": "https://www.uniprot.org/database/DB-0092", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo", + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.uniprot.org/database/DB-0092", + "@id": "https://www.uniprot.org/database/DB-0110", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://www.uniprot.org/database/DB-0113", + "@id": "http://aber-owl.net/ontology/OARCS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/mp", + "@id": "https://bioportal.bioontology.org/ontologies/NPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/rnaloops", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank.", + "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNAloops" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structural bioinformatcs" - }, - { - "@value": "rna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rnaloops.cs.put.poznan.pl" - }, - "https://bioregistry.io/schema/#0000005": "91792", - "https://bioregistry.io/schema/#0000006": "https://rnaloops.cs.put.poznan.pl/search/details/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5320-2023" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://rnaloops.cs.put.poznan.pl/search/details/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://rnaloops.cs.put.poznan.pl/search/details/91792" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rnaloops" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/wikigenes", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WikiGenes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes" - }, - { - "@id": "https://registry.identifiers.org/registry/wikigenes" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.wikigenes.org/" - }, - "https://bioregistry.io/schema/#0000005": "3771877", - "https://bioregistry.io/schema/#0000006": "http://www.wikigenes.org/e/gene/e/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbigene" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/wikigenes:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.wikigenes.org/e/gene/e/3771877.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wikigenes" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/brenda", + "@id": "http://aber-owl.net/ontology/EHDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco", + "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/myco.marinum", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://aber-owl.net/ontology/BKO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.identifiers.org/registry/pid.pathway", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.1evfpc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bartoc.org/en/node/572", + "@id": "https://www.obofoundry.org/ontology/poro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/resid", + "@id": "http://www.wikidata.org/entity/P6049", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SCDO", + "@id": "https://registry.identifiers.org/registry/homologene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://cropontology.org/ontology/CO_334", + "@id": "http://www.ontobee.org/ontology/EPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.obofoundry.org/ontology/nbo", + "@id": "https://registry.identifiers.org/registry/tair.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/combine.specifications", + "@id": "https://registry.identifiers.org/registry/snomedct", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.39fd58", + "@id": "https://fairsharing.org/FAIRsharing.e1byny", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/gcst", + "@id": "http://edamontology.org/data_1180", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://www.re3data.org/repository/r3d100012273", + "@id": "http://www.wikidata.org/entity/P1690", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.bio2kg.org/resource/subtilist", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/odc.sci", + "@id": "https://bioregistry.io/registry/lpt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.", + "http://purl.org/dc/terms/description": "The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Data Commons for Spinal Cord Injury" + "@value": "Livestock Product Trait Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/odc.sci" + "@id": "http://aber-owl.net/ontology/LPT" }, { - "@id": "https://www.re3data.org/repository/r3d100014071" + "@id": "http://agroportal.lirmm.fr/ontologies/LPT" }, { - "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "neuroscience" + "@id": "https://bioportal.bioontology.org/ontologies/LPT" }, { - "@value": "biomedical science" + "@id": "https://fairsharing.org/FAIRsharing.g78mbm" }, { - "@value": "neurology" + "@id": "https://bioregistry.io/metaregistry/biocontext/LPT" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@value": "neurobiology" + "@value": "animal husbandry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://odc-sci.org" + "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000156", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LPT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl" }, - "https://bioregistry.io/schema/#0000005": "602", - "https://bioregistry.io/schema/#0000006": "https://odc-sci.org/data/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]*$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5212-7052" + "@id": "https://orcid.org/0000-0002-2346-5201" }, - "https://bioregistry.io/schema/#0000024": "https://odc-sci.org/data/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LPT_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://odc-sci.org/data/602" + "@id": "http://purl.obolibrary.org/obo/LPT_0000156" }, "https://bioregistry.io/schema/#0000029": { - "@value": "odc.sci" + "@value": "lpt" } }, { - "@id": "http://www.ontobee.org/ontology/APOLLO_SV", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/napp", + "@id": "https://www.obofoundry.org/ontology/ogi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bugbase.expt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.", + "http://purl.org/dc/terms/description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nucleic Acids Phylogenetic Profiling" + "@value": "BugBase Expt" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp" + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP" + "@id": "https://registry.identifiers.org/registry/bugbase.expt" }, { - "@id": "https://registry.identifiers.org/registry/napp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bugs.sgul.ac.uk/E-BUGS" + }, + "https://bioregistry.io/schema/#0000005": "288", + "https://bioregistry.io/schema/#0000006": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=288" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bugbase.expt" + } + }, + { + "@id": "https://bioregistry.io/registry/one", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology to standardize research output of nutritional epidemiologic studies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for Nutritional Epidemiology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/one" }, { - "@id": "https://registry.bio2kg.org/resource/napp" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/one" }, { - "@id": "https://fairsharing.org/FAIRsharing.vr52p3" + "@id": "http://aber-owl.net/ontology/ONE" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.USxx0K" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ONE" + }, + { + "@id": "http://www.ontobee.org/ontology/ONE" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "obo" }, { - "@value": "nucleotide" + "@value": "epidemiology" }, { - "@value": "clustering" + "@value": "nutritional science" + }, + { + "@value": "ontology" + }, + { + "@value": "metabolomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://napp.u-psud.fr/" + "@id": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" + }, + "https://bioregistry.io/schema/#0000005": "0001021", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/one.owl" }, - "https://bioregistry.io/schema/#0000005": "351", - "https://bioregistry.io/schema/#0000006": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/ons" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1508-8469" + "@id": "https://orcid.org/0000-0001-9202-5309" }, - "https://bioregistry.io/schema/#0000024": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONE_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=351" + "@id": "http://purl.obolibrary.org/obo/ONE_0001021" }, "https://bioregistry.io/schema/#0000029": { - "@value": "napp" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012074", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "one" } }, { - "@id": "https://www.uniprot.org/database/DB-0052", + "@id": "https://bartoc.org/en/node/109", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/ttd.target", + "@id": "https://bioregistry.io/registry/aop", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target.", + "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TTD Target" + "@value": "AOPWiki" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2654" - }, - { - "@id": "https://registry.identifiers.org/registry/ttd.target" + "@id": "https://registry.identifiers.org/registry/aop" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bidd.nus.edu.sg/group/ttd/ttd.asp" + "@id": "https://aopwiki.org/" }, - "https://bioregistry.io/schema/#0000005": "TTDS00056", - "https://bioregistry.io/schema/#0000006": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1", - "https://bioregistry.io/schema/#0000008": "^TTDS\\d+$", + "https://bioregistry.io/schema/#0000005": "98", + "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/aops/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", + "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/aops/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=TTDS00056" + "@id": "https://aopwiki.org/aops/98" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ttd.target" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/eropmoscow", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/CIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/COLAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "aop" } }, { - "@id": "https://www.uniprot.org/database/DB-0038", + "@id": "https://registry.identifiers.org/registry/pkdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ydpm", + "@id": "https://bioregistry.io/registry/seed", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.", + "http://purl.org/dc/terms/description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Deletion and the Mitochondrial Proteomics Project" + "@value": "The SEED;" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm" + "@id": "https://registry.identifiers.org/registry/seed" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED" }, { - "@id": "https://registry.identifiers.org/registry/ydpm" + "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED" }, { - "@id": "https://registry.bio2kg.org/resource/ydpm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.68b03f" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" + "@value": "earth science" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www-deletion.stanford.edu/YDPM/" + "@id": "http://seed-viewer.theseed.org/seedviewer.cgi" }, - "https://bioregistry.io/schema/#0000005": "YAL001C", - "https://bioregistry.io/schema/#0000006": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1", - "https://bioregistry.io/schema/#0000008": "^Y[A-Z]{2}\\d+[CW]$", + "https://bioregistry.io/schema/#0000005": "Biotin_biosynthesis", + "https://bioregistry.io/schema/#0000006": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=", + "https://bioregistry.io/schema/#0000024": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=YAL001C" + "@id": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=Biotin_biosynthesis" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ydpm" + "@value": "seed" } }, { - "@id": "https://bioregistry.io/registry/lrg", + "@id": "https://bioregistry.io/registry/scretf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.", + "http://purl.org/dc/terms/description": "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Locus Reference Genomic" + "@value": "ScerTF" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LRG" + "@id": "https://registry.identifiers.org/registry/scretf" }, { - "@id": "https://registry.identifiers.org/registry/lrg" + "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.lrg-sequence.org/" + "@id": "http://stormo.wustl.edu/ScerTF/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "RSC3", + "https://bioregistry.io/schema/#0000006": "http://stormo.wustl.edu/ScerTF/details/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/lrg:", + "https://bioregistry.io/schema/#0000024": "http://stormo.wustl.edu/ScerTF/details/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ftp.ebi.ac.uk/pub/databases/lrgex/1.xml" + "@id": "http://stormo.wustl.edu/ScerTF/details/RSC3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lrg" + "@value": "scretf" } }, { - "@id": "https://bioregistry.io/registry/nlx.res", + "@id": "https://fairsharing.org/FAIRsharing.6ccbe6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/apaonto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Psychology Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nif" + "@id": "http://aber-owl.net/ontology/APAONTO" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gkw1w8" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "psychology" + }, + { + "@value": "ontology" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Digital Resources" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "software and information systems" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" + }, + "https://bioregistry.io/schema/#0000005": "Abdomen", + "https://bioregistry.io/schema/#0000006": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/APAONTO/4/apaonto.owl" }, - "https://bioregistry.io/schema/#0000005": "090924", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_res_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXRES" + "@id": "https://orcid.org/0000-0003-1082-8760" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_res_", + "https://bioregistry.io/schema/#0000024": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_res_090924" + "@id": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Abdomen" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.res" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2sqcxs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/neurovault.collection", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "apaonto" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB", + "@id": "http://aber-owl.net/ontology/ORTH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb", + "@id": "https://fairsharing.org/FAIRsharing.j7j53", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kx2md1", + "@id": "https://www.re3data.org/repository/r3d100011936", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/uniprot.chain", + "@id": "https://registry.identifiers.org/registry/genefarm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug", + "@id": "http://aber-owl.net/ontology/NCIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.wikidata.org/entity/P685", + "@id": "https://fairsharing.org/FAIRsharing.qr6pqk", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/myco.marinum", + "@id": "https://bioregistry.io/registry/co_347", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.", + "http://purl.org/dc/terms/description": "March 2017 version ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MycoBrowser marinum" + "@value": "Castor bean ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/myco.marinum" + "@id": "https://cropontology.org/ontology/CO_347" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_347" }, { - "@id": "https://registry.identifiers.org/registry/myco.marinum" + "@id": "https://fairsharing.org/FAIRsharing.qrrvyk" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "botany" }, { - "@value": "sequence" + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mycobrowser.epfl.ch/marinolist.html" + "@id": "http://www.cropontology.org/ontology/CO_347/Castor%20bean" + }, + "https://bioregistry.io/schema/#0000005": "0000108", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_347:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_347/Castor%20bean/owl" }, - "https://bioregistry.io/schema/#0000005": "MMAR_2462", - "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1", - "https://bioregistry.io/schema/#0000008": "^MMAR\\_\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N2a6598dcac82449284e147289aeb0d56" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_347:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=MMAR_2462" + "@id": "https://cropontology.org/rdf/CO_347:0000108" }, "https://bioregistry.io/schema/#0000029": { - "@value": "myco.marinum" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "co_347" } }, { - "@id": "https://bioregistry.io/registry/violinnet", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Defunct vaccine information source from the He Lab", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "_:N2a6598dcac82449284e147289aeb0d56", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ViolinNet" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1925" - }, - "https://bioregistry.io/schema/#0000005": "4140", - "https://bioregistry.io/schema/#0000006": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/oae" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "violinID" - }, - { - "@value": "violinId" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=4140" + "@value": "Crop Ontology Helpdesk" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "violinnet" - } - }, - { - "@id": "https://registry.identifiers.org/registry/greengenes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/COVID19", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/mesh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vfdb.gene", + "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/plana", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/planaria-ontology" + "@id": "https://bioregistry.io/collection/0000008", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" + "http://purl.org/dc/elements/1.1/description": { + "@value": "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana" + "@id": "https://bioregistry.io/registry/hp" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PLANA" + "@id": "https://bioregistry.io/registry/vo" }, { - "@id": "https://www.obofoundry.org/ontology/plana" + "@id": "https://bioregistry.io/registry/ovae" }, { - "@id": "http://www.ontobee.org/ontology/PLANA" + "@id": "https://bioregistry.io/registry/pubmed" }, { - "@id": "https://fairsharing.org/FAIRsharing.g1qrqs" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA" + "@id": "https://bioregistry.io/registry/rdfs" }, { - "@id": "http://aber-owl.net/ontology/PLANA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/trans" + }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/doid" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/oae" }, { - "@value": "developmental biology" + "@id": "https://bioregistry.io/registry/ido" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/caro" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/planaria-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLANA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/plana.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/bfo" + }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/pmc" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/oboinowl" + }, + { + "@id": "https://bioregistry.io/registry/symp" + }, + { + "@id": "https://bioregistry.io/registry/doi" + }, + { + "@id": "https://bioregistry.io/registry/owl" + }, + { + "@id": "https://bioregistry.io/registry/dso" } ], - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/planp" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3528-5267" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLANA_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PLANA_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "plana" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ASKEM Epidemiology Prefixes" } }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa", + "@id": "https://bioportal.bioontology.org/ontologies/FIDEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/oclc", + "@id": "https://bioregistry.io/registry/cordis.project", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.", + "http://purl.org/dc/terms/description": "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Online Computer Library Center WorldCat" + "@value": "CORDIS Project" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC" - }, - { - "@id": "https://registry.identifiers.org/registry/oclc" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.oclc.org/en/about.html" + "@id": "https://cordis.europa.eu/" }, - "https://bioregistry.io/schema/#0000005": "634515043", - "https://bioregistry.io/schema/#0000006": "https://www.worldcat.org/oclc/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "817732", + "https://bioregistry.io/schema/#0000006": "https://cordis.europa.eu/project/id/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.worldcat.org/oclc/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://cordis.europa.eu/project/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.worldcat.org/oclc/634515043" + "@id": "https://cordis.europa.eu/project/id/817732" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oclc" + "@value": "cordis.project" } }, { - "@id": "https://registry.bio2kg.org/resource/chemspider", + "@id": "https://www.obofoundry.org/ontology/oae", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bartoc.org/en/node/391", + "@id": "http://aber-owl.net/ontology/PMR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/isbn", + "@id": "https://registry.identifiers.org/registry/otl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/img.gene", + "@id": "https://bioregistry.io/registry/rgd.strain", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.", + "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Microbial Genomes Gene" + "@value": "Rat Genome Database strain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene" - }, - { - "@id": "https://registry.identifiers.org/registry/img.gene" + "@id": "https://registry.identifiers.org/registry/rgd.strain" }, { - "@id": "https://registry.bio2kg.org/resource/img.gene" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://img.jgi.doe.gov/" + "@id": "http://rgd.mcw.edu/" }, - "https://bioregistry.io/schema/#0000005": "638309541", - "https://bioregistry.io/schema/#0000006": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1", + "https://bioregistry.io/schema/#0000005": "5688061", + "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=", + "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=638309541" + "@id": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=5688061" }, "https://bioregistry.io/schema/#0000029": { - "@value": "img.gene" + "@value": "rgd.strain" } }, { - "@id": "https://bioregistry.io/registry/lgic", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.", + "@id": "http://aber-owl.net/ontology/LOINC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ligand-Gated Ion Channel database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/lgicdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC" - }, - { - "@id": "https://registry.identifiers.org/registry/lgic" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "sequence" - }, - { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php" - }, - "https://bioregistry.io/schema/#0000005": "5HT3Arano", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/lgic:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/5HT3Arano.php" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lgic" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/macie", + "@id": "https://bioregistry.io/registry/civic.gid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mechanism, Annotation and Classification in Enzymes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.7xkx69" - }, - { - "@id": "http://edamontology.org/data_2641" - }, - { - "@id": "https://registry.bio2kg.org/resource/macie" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie" - }, + "http://purl.org/dc/terms/description": "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/macie" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE" + "@id": "https://bioregistry.io/registry/civic" } ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "enzyme" + "@id": "https://registry.identifiers.org/registry/civic.gid" }, { - "@value": "pathway" + "@id": "http://www.wikidata.org/entity/P11277" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/thornton-srv/databases/MACiE/index.html" + "@id": "https://civicdb.org/" }, - "https://bioregistry.io/schema/#0000005": "M0001", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1", - "https://bioregistry.io/schema/#0000008": "^M\\d{4}$", + "https://bioregistry.io/schema/#0000005": "272", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/gene/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=", + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=M0001" + "@id": "https://civicdb.org/links/gene/272" }, "https://bioregistry.io/schema/#0000029": { - "@value": "macie" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "civic.gid" } }, { - "@id": "https://registry.identifiers.org/registry/lei", + "@id": "https://bartoc.org/en/node/1895", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/aro", + "@id": "https://bioregistry.io/registry/fossilworks.taxon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Antibiotic resistance genes and mutations", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/arpcard/aro" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Antibiotic Resistance Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/ARO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ARO" - }, - { - "@id": "https://www.obofoundry.org/ontology/aro" - }, - { - "@id": "http://www.ontobee.org/ontology/ARO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://purl.org/dc/terms/description": "Identifier for an animal, plant, or microorganism from the fossilworks website", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/fossilworks" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/arpcard/aro" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fossilworks Taxon" }, - "https://bioregistry.io/schema/#0000005": "1000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ARO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/aro.owl" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P842" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.fossilworks.org" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1142-3063" + "https://bioregistry.io/schema/#0000005": "40565", + "https://bioregistry.io/schema/#0000006": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ARO_", + "https://bioregistry.io/schema/#0000024": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ARO_1000001" + "@id": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=40565" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aro" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010652", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5pfx4r", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "fossilworks.taxon" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY", + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods", + "@id": "https://bioportal.bioontology.org/ontologies/NCIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/gexo", + "@id": "https://bioregistry.io/registry/icf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gene Expression Ontology", + "http://purl.org/dc/terms/description": "The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Expression Ontology" + "@value": "International Classification of Functioning, Disability and Health" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/GEXO" + "@id": "https://fairsharing.org/FAIRsharing.7rngj0" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo" + "@id": "https://bioportal.bioontology.org/ontologies/ICF" }, { - "@id": "https://fairsharing.org/FAIRsharing.3e0sn4" + "@id": "http://aber-owl.net/ontology/ICF" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GEXO" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "primary health care" + }, + { + "@value": "medicine" + }, + { + "@value": "biomedical science" }, { "@value": "ontology" + }, + { + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.semantic-systems-biology.org/apo" + "@id": "https://icd.who.int/dev11/l-icf/en" }, + "https://bioregistry.io/schema/#0000005": "326705068", + "https://bioregistry.io/schema/#0000006": "http://id.who.int/icd/entity/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.bio.ntnu.no/ontology/GeXO/gexo.owl" + "@id": "http://aber-owl.net/media/ontologies/ICF/3/icf.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1171-9876" + "@id": "_:N41832f0c597c429ab1999cfcb8242156" + }, + "https://bioregistry.io/schema/#0000024": "http://id.who.int/icd/entity/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://id.who.int/icd/entity/326705068" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gexo" + "@value": "icf" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "_:N41832f0c597c429ab1999cfcb8242156", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The World Health Organization" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "info@who.int" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO", + "@id": "https://bioregistry.io/registry/ngl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A database-specific registry supporting curation in the Gene Ontology" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CL" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PR" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NASA GeneLab" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP" + "@id": "https://bioregistry.io/metaregistry/biocontext/NGL" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL" + "@id": "https://registry.identifiers.org/registry/ngl" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Registry" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://geneontology.org/" + "@id": "https://genelab-data.ndc.nasa.gov/genelab/" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CHEBI" + "https://bioregistry.io/schema/#0000005": "GLDS-141", + "https://bioregistry.io/schema/#0000006": "https://genelab-data.ndc.nasa.gov/genelab/accession/$1", + "https://bioregistry.io/schema/#0000008": "^GLDS-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://genelab-data.ndc.nasa.gov/genelab/accession/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-141" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" + "https://bioregistry.io/schema/#0000029": { + "@value": "ngl" } }, { - "@id": "https://registry.identifiers.org/registry/oma.hog", + "@id": "https://bioportal.bioontology.org/ontologies/DDANAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/biotools", + "@id": "http://www.ontobee.org/ontology/SEPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/sty", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.", + "http://purl.org/dc/terms/description": "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "http://github.com/bio-tools/biotoolsregistry/" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioTools" + "@value": "UMLS Semantic Types Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100013668" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.63520c" + "@id": "http://aber-owl.net/ontology/STY" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS" + "@id": "http://www.wikidata.org/entity/P11955" }, { - "@id": "https://registry.identifiers.org/registry/biotools" + "@id": "http://ecoportal.lifewatch.eu/ontologies/STY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biology" + "@id": "http://agroportal.lirmm.fr/ontologies/STY" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG" }, { - "@value": "bioinformatics" + "@id": "https://bioportal.bioontology.org/ontologies/STY" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bio.tools/" + "@id": "https://lhncbc.nlm.nih.gov/semanticnetwork/" }, - "https://bioregistry.io/schema/#0000005": "bioregistry", - "https://bioregistry.io/schema/#0000006": "https://bio.tools/$1", - "https://bioregistry.io/schema/#0000008": "^[-A-Za-z0-9\\_]*$", + "https://bioregistry.io/schema/#0000005": "T039", + "https://bioregistry.io/schema/#0000006": "https://uts.nlm.nih.gov/uts/umls/semantic-network/$1", + "https://bioregistry.io/schema/#0000008": "^T\\d{3}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9727-2544" + "@id": "_:N28837f905bbe4f449cd65892310641e6" }, - "https://bioregistry.io/schema/#0000024": "https://bio.tools/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "umls.st" + }, + { + "@value": "UMLSSG" + }, + { + "@value": "umls.sty" + } + ], + "https://bioregistry.io/schema/#0000024": "https://uts.nlm.nih.gov/uts/umls/semantic-network/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bio.tools/bioregistry" + "@id": "https://uts.nlm.nih.gov/uts/umls/semantic-network/T039" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biotools" + "@value": "sty" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV", + "@id": "_:N28837f905bbe4f449cd65892310641e6", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "bioportal" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "support@bioontology.org" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_333", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo", + "@id": "https://registry.identifiers.org/registry/mint", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/NDDF", + "@id": "http://www.wikidata.org/entity/P6209", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/metanetx.chemical", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/unists", + "@id": "https://fairsharing.org/FAIRsharing.fhcmwq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst", + "@id": "http://agroportal.lirmm.fr/ontologies/VARIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/bdgp.insertion", + "@id": "https://fairsharing.org/FAIRsharing.ae8hpt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rdf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts", + "@id": "https://www.obofoundry.org/ontology/dpo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Resource Description Framework" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.p77ph9" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdf" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "subject agnostic" - }, - { - "@value": "computer science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns" - }, - "https://bioregistry.io/schema/#0000005": "RDF", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5699-0515" - }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#RDF" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rdf" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile", + "@id": "https://www.obofoundry.org/ontology/rxno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P1579", + "@id": "https://www.re3data.org/repository/r3d100012629", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGI", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ex3fqk", + "@id": "https://fairsharing.org/FAIRsharing.48e326", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/dragondb.protein", + "@id": "https://registry.bio2kg.org/resource/hprd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/hc.trial", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]", + "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Canada Clinical Trials Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://health-products.canada.ca/ctdb-bdec" - }, - "https://bioregistry.io/schema/#0000005": "239287", - "https://bioregistry.io/schema/#0000006": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=239287" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hc.trial" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ccdc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/seo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SEO is a reference ontology for modelling data about scientific events such as conferences, symposioums and workshops.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scientific Event Ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org/seo" - }, - "https://bioregistry.io/schema/#0000005": "Symposium", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/seo#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/seo#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/seo#Symposium" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "seo" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/autdb", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1fbc5y", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EMAPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_2738", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/UPHENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/matrixdb.association", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/VIDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/virushostdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/fsnp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.", + "http://purl.org/dc/terms/description": "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AutDB" + "@value": "F-SNP" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/autdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB" + "@id": "https://registry.bio2kg.org/resource/fsnp" + }, + { + "@id": "https://registry.identifiers.org/registry/fsnp" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://autism.mindspec.org/autdb/" + "@id": "http://compbio.cs.queensu.ca/F-SNP/" }, - "https://bioregistry.io/schema/#0000005": "ADA", - "https://bioregistry.io/schema/#0000006": "http://autism.mindspec.org/GeneDetail/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]+[A-Z-0-9]{2,}$", + "https://bioregistry.io/schema/#0000005": "rs17852708", + "https://bioregistry.io/schema/#0000006": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1", + "https://bioregistry.io/schema/#0000008": "^rs\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://autism.mindspec.org/GeneDetail/", + "https://bioregistry.io/schema/#0000024": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://autism.mindspec.org/GeneDetail/ADA" + "@id": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=rs17852708" }, "https://bioregistry.io/schema/#0000029": { - "@value": "autdb" + "@value": "fsnp" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_346", + "@id": "http://aber-owl.net/ontology/OHD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/ensembl.protist", + "@id": "https://bioregistry.io/registry/vipr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes.", + "http://purl.org/dc/terms/description": "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VirusBRC" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Protists" + "@value": "Virus Pathogen Resource" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/ensembl.protist" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.protist" + "@id": "https://fairsharing.org/FAIRsharing.2qx8n8" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST" + "@id": "https://www.re3data.org/repository/r3d100011931" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR" + }, + { + "@id": "https://registry.identifiers.org/registry/vipr" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genomics" + }, + { + "@value": "immunology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "virology" + }, + { + "@value": "life science" + }, + { + "@value": "proteomics" + }, + { + "@value": "epidemiology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://protists.ensembl.org" + "@id": "http://www.viprbrc.org/brc/home.do?decorator=vipr" }, - "https://bioregistry.io/schema/#0000005": "PF3D7_1328700", - "https://bioregistry.io/schema/#0000006": "https://protists.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "BeAn 70563", + "https://bioregistry.io/schema/#0000006": "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z 0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://protists.ensembl.org/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://protists.ensembl.org/id/PF3D7_1328700" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1355-892X" }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vipr:", "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl.protist" + "@value": "vipr" } }, { - "@id": "https://registry.identifiers.org/registry/gold.genome", + "@id": "https://fairsharing.org/FAIRsharing.xhpc3h", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo", + "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/cutg", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0003-4446-6200", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Omar Harb" + }, + { + "@value": "Jessica Kissinger" + } + ], + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "oharb@pcbi.upenn.edu" + }, + { + "@value": "jkissing@uga.edu" + } + ] + }, + { + "@id": "https://www.uniprot.org/database/DB-0015", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/so", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/rgd.qtl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank.", + "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Codon Usage Tabulated from GenBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/cutg" + "@value": "Rat Genome Database qTL" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl" + }, + { + "@id": "https://registry.identifiers.org/registry/rgd.qtl" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kazusa.or.jp/codon/" - }, - "https://bioregistry.io/schema/#0000005": "9606", - "https://bioregistry.io/schema/#0000006": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "http://rgd.mcw.edu/" }, + "https://bioregistry.io/schema/#0000005": "1354581", + "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=", + "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=9606" + "@id": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=1354581" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cutg" + "@value": "rgd.qtl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER", + "@id": "https://orcid.org/0000-0002-6025-0015", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Heidi L. Rehm" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hrehm@mgh.harvard.edu" + } + }, + { + "@id": "http://edamontology.org/data_2344", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.identifiers.org/registry/mirtarbase", + "@id": "https://fairsharing.org/FAIRsharing.4c7f91", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/tol", + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON", + "@id": "http://www.wikidata.org/entity/P3606", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.rkpmhn", + "@id": "http://edamontology.org/data_1153", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.175hsz", + "@id": "https://registry.identifiers.org/registry/supfam", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/licebase", + "@id": "https://registry.identifiers.org/registry/dbest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/co_320", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects.", + "http://purl.org/dc/terms/description": "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LiceBase" + "@value": "Rice ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.c7w81a" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_320" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE" + "@id": "https://fairsharing.org/FAIRsharing.2jkxp5" }, { - "@id": "https://www.re3data.org/repository/r3d100013547" + "@id": "https://cropontology.org/ontology/CO_320" }, { - "@id": "https://registry.identifiers.org/registry/licebase" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase" + "@value": "life science" + }, + { + "@value": "agriculture" + }, + { + "@value": "botany" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://licebase.org" + "@id": "https://cropontology.org/ontology/CO_320/Rice" + }, + "https://bioregistry.io/schema/#0000005": "0000618", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_320:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_320/Rice/owl" }, - "https://bioregistry.io/schema/#0000005": "EMLSAT00000003403", - "https://bioregistry.io/schema/#0000006": "https://licebase.org/?q=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\-\\/]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4110-0748" + "@id": "https://orcid.org/0000-0002-6680-578X" }, - "https://bioregistry.io/schema/#0000024": "https://licebase.org/?q=", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_320:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://licebase.org/?q=EMLSAT00000003403" + "@id": "https://cropontology.org/rdf/CO_320:0000618" }, "https://bioregistry.io/schema/#0000029": { - "@value": "licebase" + "@value": "co_320" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c4e46c", + "@id": "https://www.re3data.org/repository/r3d100012315", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/gmd.ref", + "@id": "https://bioregistry.io/registry/unichem", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.", + "http://purl.org/dc/terms/description": "identifier of a compound in the UniChem database", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Golm Metabolome Database Reference Substance" + "@value": "UniChem compound" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P11089" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/gmd.ref" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gmd.mpimp-golm.mpg.de/" + "@id": "https://chembl.gitbook.io/unichem/downloads" }, - "https://bioregistry.io/schema/#0000005": "8cf84adb-b4db-4807-ac98-0004247c35df", - "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1", - "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000005": "161671", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/8cf84adb-b4db-4807-ac98-0004247c35df" + "@id": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=161671" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gmd.ref" + "@value": "unichem" } }, { - "@id": "http://aber-owl.net/ontology/MA", + "@id": "https://registry.bio2kg.org/resource/vt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/DUO", + "@id": "http://www.ontobee.org/ontology/SWO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://orcid.org/0000-0003-1617-8244", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-2340-5356", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lindsay Cowell" + "@value": "Troy Pells" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Lindsay.Cowell@utsouthwestern.edu" + "@value": "troy_pells@yahoo.ca" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CL", + "@id": "http://aber-owl.net/ontology/DOID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/credit", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/covid19", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output.", + "http://purl.org/dc/terms/description": "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CASRAI Contributor Roles Taxonomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.fe4816" + "@value": "COVID-19 Surveillance Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "data quality" + "@id": "http://aber-owl.net/ontology/COVID19" }, { - "@value": "subject agnostic" + "@id": "https://bioportal.bioontology.org/ontologies/COVID19" + }, + { + "@id": "https://registry.identifiers.org/registry/covid19" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://casrai.org/credit/" + "@id": "https://covid19.sfb.uit.no" + }, + "https://bioregistry.io/schema/#0000005": "SFB_COVID19_MW286762", + "https://bioregistry.io/schema/#0000006": "https://covid19.sfb.uit.no/api/records/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+_COVID19_[-\\w]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/COVID19/3/covid19.owl" }, - "https://bioregistry.io/schema/#0000005": "Software", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9298-3168" + "@id": "https://orcid.org/0000-0002-6772-2775" + }, + "https://bioregistry.io/schema/#0000024": "https://covid19.sfb.uit.no/api/records/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://covid19.sfb.uit.no/api/records/SFB_COVID19_MW286762" }, "https://bioregistry.io/schema/#0000029": { - "@value": "credit" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pina", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "covid19" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dvyrsz", + "@id": "https://fairsharing.org/FAIRsharing.tppk10", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna", + "@id": "http://www.ontobee.org/ontology/BFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/sharkipedia.trait", + "@id": "https://bioregistry.io/registry/dragondb.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", + "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/sharkipedia" + "@id": "https://bioregistry.io/registry/dragondb" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sharkipedia/sharkipedia" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sharkipedia Trait" + "@value": "DragonDB Protein" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein" + }, + { + "@id": "https://registry.identifiers.org/registry/dragondb.protein" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.sharkipedia.org/" - }, - "https://bioregistry.io/schema/#0000005": "13", - "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/traits/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1710-8256" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "http://www.antirrhinum.net/" }, - "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/traits/", + "https://bioregistry.io/schema/#0000005": "AMDEFA", + "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.protein:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.sharkipedia.org/traits/13" + "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=AMDEFA;class=Peptide" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sharkipedia.trait" + "@value": "dragondb.protein" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/kegg.module", + "@id": "https://orcid.org/0000-0003-1710-8256", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Christopher Mull" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "creeas@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/ricenetdb.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], + "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Module" + "@value": "RiceNetDB Protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module" + "@id": "https://registry.identifiers.org/registry/ricenetdb.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN" }, { - "@id": "https://registry.identifiers.org/registry/kegg.module" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kegg.jp/kegg/module.html" + "@id": "http://bis.zju.edu.cn/ricenetdb/" }, - "https://bioregistry.io/schema/#0000005": "M00002", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^([a-z]{3,5}_)?M\\d{5}$", + "https://bioregistry.io/schema/#0000005": "LOC_Os01g49190", + "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/M00002" + "@id": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=LOC_Os01g49190" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.module" + "@value": "ricenetdb.protein" } }, { - "@id": "https://registry.identifiers.org/registry/treebase", + "@id": "https://www.re3data.org/repository/r3d100011496", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/grin.taxonomy", + "@id": "http://edamontology.org/data_2723", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/string", + "@id": "https://registry.bio2kg.org/resource/symptom", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE", + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/debio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Decentralized Biomedical Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biopragmatics.github.io/debio" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/debio/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/biopragmatics/debio/main/releases/current/debio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/schema/#0000007", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." }, - "https://bioregistry.io/schema/#0000023": { - "@value": "DeBiO" + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000002" }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/debio/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/debio/0000001" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has resolver formatter" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "debio" + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION", + "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-9896-3531", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Dr. Alpha Tom Kodamullil" - }, - { - "@value": "Alpha Tom Kodamullil" - } - ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "alpha.tom.kodamullil@scai.fraunhofer.de" + "@id": "https://registry.identifiers.org/registry/gold", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.b084yh", + "@id": "https://fairsharing.org/FAIRsharing.dxx0c", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bartoc.org/en/node/400", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/bionumbers", + "@id": "https://registry.bio2kg.org/resource/spike", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/aop.events", + "@id": "http://edamontology.org/data_1041", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://orcid.org/0000-0002-8912-5699", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jeffrey Wong" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jeffvin.wong@utoronto.ca" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/UPA", + "@id": "http://aber-owl.net/ontology/DPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/genewiki", + "@id": "https://bioportal.bioontology.org/ontologies/FOAF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gtex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.uniprot.org/database/DB-0183", + "@id": "https://registry.identifiers.org/registry/ma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAO", + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model", + "@id": "https://bioregistry.io/registry/lincs.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LINCS Cell" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL" + }, + { + "@id": "https://registry.identifiers.org/registry/lincs.cell" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://lincsportal.ccs.miami.edu/cells/" + }, + "https://bioregistry.io/schema/#0000005": "LCL-2085", + "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/cells/#/view/$1", + "https://bioregistry.io/schema/#0000008": "^(LCL|LDC|ES|LSC|LPC)-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "LINCS_LDP" + }, + "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/cells/#/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://lincsportal.ccs.miami.edu/cells/#/view/LCL-2085" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lincs.cell" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBOREL", + "@id": "http://aber-owl.net/ontology/SALMON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/ecocore", + "@id": "http://aber-owl.net/ontology/NCBITAXON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/sstoss", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/mesh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.", + "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/mesh.vocab" + }, "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EcologicalSemantics/ecocore" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "An ontology of core ecological entities" + "@value": "Medical Subject Headings" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE" + "@id": "https://bartoc.org/en/node/391" }, { - "@id": "http://aber-owl.net/ontology/ECOCORE" + "@id": "https://registry.identifiers.org/registry/mesh" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore" + "@id": "https://registry.bio2kg.org/resource/mesh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE" + "@id": "http://www.wikidata.org/entity/P486" }, { - "@id": "https://www.obofoundry.org/ontology/ecocore" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH" }, { - "@id": "http://www.ontobee.org/ontology/ECOCORE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh" + }, + { + "@id": "http://edamontology.org/data_1177" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH" + }, + { + "@id": "http://aber-owl.net/ontology/MESH" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qnkw45" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MESH" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "classification" }, { "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "life science" + }, + { + "@value": "topics" + }, + { + "@value": "metascience" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EcologicalSemantics/ecocore" - }, - "https://bioregistry.io/schema/#0000005": "00000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECOCORE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ecocore.owl" + "@id": "http://id.nlm.nih.gov/mesh/" }, + "https://bioregistry.io/schema/#0000005": "C063233", + "https://bioregistry.io/schema/#0000006": "https://meshb.nlm.nih.gov/record/ui?ui=$1", + "https://bioregistry.io/schema/#0000008": "^(C|D)\\d{6,9}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N7620f5ed203042c99a506f091ba3d8a8" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/bfo" + "@value": "MSH2010_2010_02_22" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@value": "MESHPP" }, { - "@id": "https://bioregistry.io/registry/po" + "@value": "MESHD" }, { - "@id": "https://bioregistry.io/registry/go" + "@value": "MESH_SUPPLEMENTAL_RECORD_UI" }, { - "@id": "https://bioregistry.io/registry/ro" + "@value": "MESHCS" }, { - "@id": "https://bioregistry.io/registry/envo" + "@value": "MSH" }, { - "@id": "https://bioregistry.io/registry/iao" + "@value": "MESHA" }, { - "@id": "https://bioregistry.io/registry/pco" + "@value": "MESHC" }, { - "@id": "https://bioregistry.io/registry/pato" + "@value": "MESH_DESCRIPTOR_UI" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@value": "MESH" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4366-3088" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECOCORE_", + "https://bioregistry.io/schema/#0000024": "https://meshb.nlm.nih.gov/record/ui?ui=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ECOCORE_00000001" + "@id": "https://meshb.nlm.nih.gov/record/ui?ui=C063233" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecocore" + "@value": "mesh" } }, { - "@id": "https://registry.identifiers.org/registry/macie", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "_:N7620f5ed203042c99a506f091ba3d8a8", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NLM Customer Service" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "custserv@nlm.nih.gov" } }, { - "@id": "https://www.re3data.org/repository/r3d100010671", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zcn4w4", + "@id": "https://registry.bio2kg.org/resource/fbcv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-1466-062X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Adrien Coulet" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "adrien.coulet@loria.fr" + "@id": "https://www.obofoundry.org/ontology/nif_dysfunction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://orcid.org/0000-0002-0381-3766", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bryce Mecum" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "brycemecum@gmail.com" + "@id": "http://www.wikidata.org/entity/P1579", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod", + "@id": "https://registry.identifiers.org/registry/ctd.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/1884", + "@id": "https://bioregistry.io/registry/aceview.worm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Aceview Worm" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm" + }, + { + "@id": "https://registry.bio2kg.org/resource/aceview.worm" + }, + { + "@id": "https://registry.identifiers.org/registry/aceview.worm" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "rna" + }, + { + "@value": "gene" + }, + { + "@value": "dna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm" + }, + "https://bioregistry.io/schema/#0000005": "aap-1", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=aap-1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "aceview.worm" } }, { - "@id": "https://bioregistry.io/registry/protonet.proteincard", + "@id": "https://bioregistry.io/registry/protonet.cluster", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.", + "http://purl.org/dc/terms/description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProtoNet ProteinCard" + "@value": "ProtoNet Cluster" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/protonet.proteincard" + "@id": "https://registry.bio2kg.org/resource/protonet.cluster" }, { - "@id": "https://registry.bio2kg.org/resource/protonet.proteincard" + "@id": "https://registry.identifiers.org/registry/protonet.cluster" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "classification" + }, + { + "@value": "protein" + }, + { + "@value": "clustering" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { "@id": "http://www.protonet.cs.huji.ac.il/" }, - "https://bioregistry.io/schema/#0000005": "16941567", - "https://bioregistry.io/schema/#0000006": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1", + "https://bioregistry.io/schema/#0000005": "4349895", + "https://bioregistry.io/schema/#0000006": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=", + "https://bioregistry.io/schema/#0000024": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=16941567" + "@id": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=4349895" }, "https://bioregistry.io/schema/#0000029": { - "@value": "protonet.proteincard" + "@value": "protonet.cluster" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ca48xs", + "@id": "http://www.ontobee.org/ontology/OHMI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/ido", + "@id": "https://registry.identifiers.org/registry/ttd.target", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/pmc", + "@id": "http://aber-owl.net/ontology/PROPREO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-9625-1899", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bill Duncan" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wdduncan@gmail.com" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.uniprot.org/database/DB-0126", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GABI", + "@id": "https://bioportal.bioontology.org/ontologies/PR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/cosmic", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0003-3162-7490", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wasila Dahdul" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wasila.dahdul@usd.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-9922-9723", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yiming Bao" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "baoym@big.ac.cn" - } - }, - { - "@id": "https://bioregistry.io/registry/exac.gene", + "@id": "https://bioregistry.io/registry/unimod", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information.", + "http://purl.org/dc/terms/description": "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ExAC Gene" + "@value": "Unimod protein modification database for mass spectrometry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod" }, { - "@id": "https://registry.identifiers.org/registry/exac.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://exac.broadinstitute.org/" - }, - "https://bioregistry.io/schema/#0000005": "ENSG00000169174", - "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^ENSG\\d{11}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://exac.broadinstitute.org/gene/ENSG00000169174" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "exac.gene" - } - }, - { - "@id": "https://bioregistry.io/registry/nif.std", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" + "@id": "http://edamontology.org/data_3757" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD" + "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ" }, { - "@id": "https://fairsharing.org/FAIRsharing.vgw1m6" + "@id": "https://registry.identifiers.org/registry/unimod" }, { - "@id": "http://aber-owl.net/ontology/NIFSTD" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -37382,2764 +38027,2421 @@ "@value": "ontology" }, { - "@value": "neuroscience" + "@value": "bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "http://www.unimod.org/" }, - "https://bioregistry.io/schema/#0000005": "BAMSC981", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/$1", - "https://bioregistry.io/schema/#0000008": "^BAMSC\\d+$", + "https://bioregistry.io/schema/#0000005": "1200", + "https://bioregistry.io/schema/#0000006": "http://www.unimod.org/modifications_view.php?editid1=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/NIFSTD/23/nifstd.owl" + "@id": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/unimod.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NIFSTD" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/", + "https://bioregistry.io/schema/#0000024": "http://www.unimod.org/modifications_view.php?editid1=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/BAMSC981" + "@id": "http://www.unimod.org/modifications_view.php?editid1=1200" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nif.std" + "@value": "unimod" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan", + "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.drug", + "@id": "https://semanticscience.org/resource/CHEMINF_000565", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/registry/prodom", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.", + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProDom" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.a8z6gz" - }, - { - "@id": "https://registry.identifiers.org/registry/prodom" - }, - { - "@id": "https://registry.bio2kg.org/resource/prodom" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/storedb.file", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "File inside StoreDB", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@value": "classification" + "@id": "https://bioregistry.io/registry/storedb" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "STOREDB at University of Cambridge" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://prodom.prabi.fr/prodom/current/html/home.php" + "@id": "https://www.storedb.org/" }, - "https://bioregistry.io/schema/#0000005": "PD10000", - "https://bioregistry.io/schema/#0000006": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1", - "https://bioregistry.io/schema/#0000008": "^PD\\d+$", + "https://bioregistry.io/schema/#0000005": "12929", + "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/store_v3/download.jsp?fileId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=", + "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/store_v3/download.jsp?fileId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD10000" + "@id": "https://www.storedb.org/store_v3/download.jsp?fileId=12929" }, "https://bioregistry.io/schema/#0000029": { - "@value": "prodom" + "@value": "storedb.file" } }, { - "@id": "http://aber-owl.net/ontology/VTO", + "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/vao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/bioportal", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "http://github.com/ncbo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioPortal" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/bioportal" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012344" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4m97ah" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL" - }, - { - "@id": "https://registry.bio2kg.org/resource/bioportal" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "life science" - }, - { - "@value": "ontology and terminology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioportal.bioontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "1046", - "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/$1", - "https://bioregistry.io/schema/#0000008": "^(\\d+)|(\\w+)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6875-5360" - }, - "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioportal.bioontology.org/ontologies/1046" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/OMO", + "@id": "https://fairsharing.org/FAIRsharing.4vr0ys", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/nmr", + "@id": "http://www.wikidata.org/entity/P3811", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.63520c", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.8qcbs0", + "@id": "https://bioregistry.io/metaregistry/biocontext/DIP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell", + "@id": "https://bioregistry.io/metaregistry/biocontext/xsd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/gro", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.js20q3", + "@id": "https://cropontology.org/ontology/CO_330", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/kegg.brite", + "@id": "https://bioregistry.io/registry/umbbd.pathway", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships.", + "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.", "http://purl.org/dc/terms/isPartOf": [ { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "https://bioregistry.io/registry/umbbd" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG BRITE" + "@value": "EAWAG Biocatalysis/Biodegradation Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE" + "@id": "https://registry.identifiers.org/registry/umbbd.pathway" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.brite" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "classification" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway" }, { - "@value": "pathway" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/brite.html" + "@id": "http://umbbd.ethz.ch/" }, - "https://bioregistry.io/schema/#0000005": "ko00071", - "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$1", + "https://bioregistry.io/schema/#0000005": "ala", + "https://bioregistry.io/schema/#0000006": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+brko00071" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.brite" - } - }, - { - "@id": "https://bioregistry.io/registry/civic.sid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/civic" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Source" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.sid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" + "https://bioregistry.io/schema/#0000023": { + "@value": "UM-BBD_pathwayID" }, - "https://bioregistry.io/schema/#0000005": "62", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/sources/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/sources/", + "https://bioregistry.io/schema/#0000024": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/sources/62" + "@id": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=ala" }, "https://bioregistry.io/schema/#0000029": { - "@value": "civic.sid" + "@value": "umbbd.pathway" } }, { - "@id": "https://bioregistry.io/registry/ohd", + "@id": "https://bioregistry.io/registry/edda", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies.", + "http://purl.org/dc/terms/description": "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/oral-health-and-disease-ontologies/ohd-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oral Health and Disease Ontology" + "@value": "EDDA Study Designs Taxonomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/OHD" - }, - { - "@id": "https://www.obofoundry.org/ontology/ohd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bg7bb6" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OHD" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHD" + "@id": "https://bioportal.bioontology.org/ontologies/EDDA" }, { - "@id": "http://aber-owl.net/ontology/OHD" + "@id": "http://aber-owl.net/ontology/EDDA" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd" + "@id": "https://fairsharing.org/FAIRsharing.2ffmsb" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "oral surgery" - }, { "@value": "medicine" }, - { - "@value": "dentistry" - }, - { - "@value": "obo" - }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://purl.obolibrary.org/obo/ohd/home" + "@id": "https://bioportal.bioontology.org/ontologies/EDDA" }, - "https://bioregistry.io/schema/#0000005": "0000006", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "health_care_quality_assessment", + "https://bioregistry.io/schema/#0000006": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ohd.owl" + "@id": "http://aber-owl.net/media/ontologies/EDDA/11/edda.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9625-1899" + "@id": "https://orcid.org/0000-0002-8537-9077" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHD_", + "https://bioregistry.io/schema/#0000024": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OHD_0000006" + "@id": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#health_care_quality_assessment" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ohd" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vbase2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "edda" } }, { - "@id": "http://www.wikidata.org/entity/P10074", + "@id": "http://www.wikidata.org/entity/P3431", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bgkyd7", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/TXPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/omim", + "@id": "https://bioregistry.io/registry/ndfrt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/omim.ps" - }, + "http://purl.org/dc/terms/description": "NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction].", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Online Mendelian Inheritance in Man" + "@value": "National Drug File - Reference Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b084yh" - }, - { - "@id": "http://edamontology.org/data_1153" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMIM" + "@id": "https://fairsharing.org/FAIRsharing.901nkj" }, { - "@id": "http://aber-owl.net/ontology/OMIM" + "@id": "http://www.ontobee.org/ontology/NDF-RT" }, { - "@id": "http://www.wikidata.org/entity/P492" + "@id": "https://bioportal.bioontology.org/ontologies/NDFRT" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM" + "@id": "http://aber-owl.net/ontology/NDFRT" }, { - "@id": "https://registry.identifiers.org/registry/mim" + "@id": "https://registry.bio2kg.org/resource/ndfrt" }, { - "@id": "https://www.uniprot.org/database/DB-0062" + "@id": "http://www.wikidata.org/entity/P2115" }, { - "@id": "https://registry.bio2kg.org/resource/omim" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "medicine" }, { - "@value": "ontology" + "@value": "physiology" }, { - "@value": "gene expression" + "@value": "biomedical science" }, { - "@value": "biomedical science" + "@value": "ontology" + }, + { + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://omim.org/" + "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDFRT" }, - "https://bioregistry.io/schema/#0000005": "603903", - "https://bioregistry.io/schema/#0000006": "https://omim.org/MIM:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "N0000001662", + "https://bioregistry.io/schema/#0000006": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#$1", + "https://bioregistry.io/schema/#0000008": "^N[0-9]{10}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1780-5230" + "@id": "_:N87bd32b830b94121b49a5ee2bcc891af" }, "https://bioregistry.io/schema/#0000023": [ { - "@value": "mim" + "@value": "NUI" }, { - "@value": "OMIM" + "@value": "ndf-rt" } ], - "https://bioregistry.io/schema/#0000024": "https://omim.org/MIM:", + "https://bioregistry.io/schema/#0000024": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://omim.org/MIM:603903" + "@id": "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000001662" }, "https://bioregistry.io/schema/#0000029": { - "@value": "omim" + "@value": "ndfrt" } }, { - "@id": "https://registry.bio2kg.org/resource/yrc", + "@id": "_:N87bd32b830b94121b49a5ee2bcc891af", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael J. Lincoln MD" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "michael.lincoln@va.gov" + } + }, + { + "@id": "https://orcid.org/0000-0001-8815-0078", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ramona Walls" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rlwalls2008@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ATC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/XPO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2f3180", + "@id": "https://registry.bio2kg.org/resource/hogenom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECO", + "@id": "https://bioportal.bioontology.org/ontologies/WB-BT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zhwa8x", + "@id": "https://registry.identifiers.org/registry/chebi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_331", + "@id": "https://bioregistry.io/registry/scop.sccs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SCOP(e) concise classification string" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://edamontology.org/data_1041" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://scop.berkeley.edu" + }, + "https://bioregistry.io/schema/#0000005": "a.39.1.1", + "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sccs=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5153-9079" + }, + "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sccs=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://scop.berkeley.edu/sccs=a.39.1.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scop.sccs" } }, { - "@id": "https://registry.identifiers.org/registry/fcb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/isni", + "@id": "https://bioregistry.io/registry/covoc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.", + "http://purl.org/dc/terms/description": "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/covoc" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Standard Name Identifier" + "@value": "CoVoc Coronavirus Vocabulary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/isni" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.isni.org" + "@id": "https://github.com/EBISPOT/covoc" + }, + "https://bioregistry.io/schema/#0000005": "0010034", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COVOC_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/EBISPOT/covoc/releases/download/current/covoc.owl" }, - "https://bioregistry.io/schema/#0000005": "000000012281955X", - "https://bioregistry.io/schema/#0000006": "http://www.isni.org/isni/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{15}[0-9X]{1}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.isni.org/isni/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4071-8397" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COVOC_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.isni.org/isni/000000012281955X" + "@id": "http://purl.obolibrary.org/obo/COVOC_0010034" }, "https://bioregistry.io/schema/#0000029": { - "@value": "isni" + "@value": "covoc" } }, { - "@id": "https://orcid.org/0000-0003-1710-8256", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Christopher Mull" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "creeas@gmail.com" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/go", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/hpm.peptide", + "@id": "https://bioregistry.io/registry/hom", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.", + "http://purl.org/dc/terms/description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BgeeDB/homology-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Proteome Map Peptide" + "@value": "Homology Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom" }, { - "@id": "https://registry.identifiers.org/registry/hpm.peptide" + "@id": "http://www.ontobee.org/ontology/HOM" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE" + "@id": "https://bioportal.bioontology.org/ontologies/HOM" + }, + { + "@id": "http://aber-owl.net/ontology/HOM" + }, + { + "@id": "https://www.obofoundry.org/ontology/hom" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOM" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.efv7gw" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.humanproteomemap.org/index.php" + "@id": "https://github.com/BgeeDB/homology-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000049", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HOM_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hom.owl" }, - "https://bioregistry.io/schema/#0000005": "9606117", - "https://bioregistry.io/schema/#0000006": "http://www.humanproteomemap.org/spectrum.php?pep_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.humanproteomemap.org/spectrum.php?pep_id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9415-5104" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HOM_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.humanproteomemap.org/spectrum.php?pep_id=9606117" + "@id": "http://purl.obolibrary.org/obo/HOM_0000049" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hpm.peptide" + "@value": "hom" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bartoc.org/en/node/1897", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao", + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/metabolights", + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011556", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/cpt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.", + "http://purl.org/dc/terms/description": "Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MetaboLights Compound" + "@value": "Current Procedural Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/metabolights" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS" + "@id": "https://bioportal.bioontology.org/ontologies/CPT" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights" + "@id": "http://aber-owl.net/ontology/CPT" }, { - "@id": "http://www.wikidata.org/entity/P3890" + "@id": "https://fairsharing.org/FAIRsharing.wpxab1" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights" + "@value": "biomedical science" }, { - "@id": "https://www.re3data.org/repository/r3d100011556" + "@value": "health science" + }, + { + "@value": "medicine" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/metabolights/" + "@id": "https://www.aapc.com" }, - "https://bioregistry.io/schema/#0000005": "MTBLS1", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metabolights/$1", - "https://bioregistry.io/schema/#0000008": "^MTBLS\\d+$", + "https://bioregistry.io/schema/#0000005": "00103", + "https://bioregistry.io/schema/#0000006": "https://www.aapc.com/codes/cpt-codes/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metabolights/", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N3830f9a7c24d4ca0a42acc9fe0c217a9" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ama-cpt" + }, + "https://bioregistry.io/schema/#0000024": "https://www.aapc.com/codes/cpt-codes/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/metabolights/MTBLS1" + "@id": "https://www.aapc.com/codes/cpt-codes/00103" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metabolights" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0136", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@value": "cpt" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "_:N3830f9a7c24d4ca0a42acc9fe0c217a9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "American Medical Association" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Intellectual.PropertyServices@ama-assn.org" } }, { - "@id": "https://registry.identifiers.org/registry/ngl", + "@id": "http://www.ontobee.org/ontology/ADO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/dbg2introns", + "@id": "https://bioregistry.io/registry/sabiork.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.", + "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DBG2 Introns" + "@value": "SABIO-RK Reaction" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/mgiid" + "@id": "https://fairsharing.org/FAIRsharing.cwx04e" }, { - "@id": "https://registry.identifiers.org/registry/dbg2introns" + "@id": "http://edamontology.org/data_2309" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns" + "@id": "https://registry.bio2kg.org/resource/sabiork.reaction" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011052" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION" + }, + { + "@id": "https://registry.identifiers.org/registry/sabiork.reaction" + }, + { + "@id": "https://www.uniprot.org/database/DB-0177" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "kinetics" + }, + { + "@value": "pathway" + }, + { + "@value": "biochemistry" + }, + { + "@value": "reaction" + }, + { + "@value": "life science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://webapps2.ucalgary.ca/~groupii/" + "@id": "http://sabiork.h-its.org/" }, - "https://bioregistry.io/schema/#0000005": "Cu.me.I1", - "https://bioregistry.io/schema/#0000006": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1", - "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000005": "75", + "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/reacdetails.jsp?reactid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=", + "https://bioregistry.io/schema/#0000023": { + "@value": "SABIO-RK" + }, + "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/reacdetails.jsp?reactid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=Cu.me.I1" + "@id": "http://sabiork.h-its.org/reacdetails.jsp?reactid=75" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dbg2introns" + "@value": "sabiork.reaction" } }, { - "@id": "https://bioregistry.io/registry/utrdb", + "@id": "https://bioregistry.io/registry/gramene.reference", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. ", + "http://purl.org/dc/terms/description": "Literature references in Gramene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UTRdb" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/utrdb" + "@value": "Gramene Reference" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://utrdb.cloud.ba.infn.it/utrdb/index_107.html" + "@id": "http://www.gramene.org" }, - "https://bioregistry.io/schema/#0000005": "5UTR_107_ENST00000517291.2", - "https://bioregistry.io/schema/#0000006": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1", - "https://bioregistry.io/schema/#0000008": "^([3-5][A-Z])\\w+[^A-Z][0-9]$", + "https://bioregistry.io/schema/#0000005": "6200", + "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/literature/pub_search?ref_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=", + "https://bioregistry.io/schema/#0000023": { + "@value": "gramene.ref" + }, + "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/literature/pub_search?ref_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=5UTR_107_ENST00000517291.2" + "@id": "http://www.gramene.org/db/literature/pub_search?ref_id=6200" }, "https://bioregistry.io/schema/#0000029": { - "@value": "utrdb" + "@value": "gramene.reference" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp", + "@id": "https://fairsharing.org/FAIRsharing.e7e609", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/UO", + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/spike.map", + "@id": "https://fairsharing.org/FAIRsharing.e08886", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P11623", + "@id": "https://registry.bio2kg.org/resource/topdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/oma.grp", + "@id": "https://registry.identifiers.org/registry/metanetx.reaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/pseudo", + "@id": "https://registry.identifiers.org/registry/pazar", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/gold.genome", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GOLD genome" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/gold.genome" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi" - }, - "https://bioregistry.io/schema/#0000005": "Gi07796", - "https://bioregistry.io/schema/#0000006": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1", - "https://bioregistry.io/schema/#0000008": "^(Gi|Gc)\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=Gi07796" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gold.genome" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/VT", + "@id": "http://www.wikidata.org/entity/P8372", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy", + "@id": "http://www.wikidata.org/entity/P3406", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dc", + "@id": "https://registry.identifiers.org/registry/hinv.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.aVmpKl", + "@id": "https://registry.identifiers.org/registry/unimod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/aop.stressor", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", + "@id": "https://registry.bio2kg.org/resource/kegg.glycan", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AOPWiki (Stressor)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor" - }, - { - "@id": "https://registry.identifiers.org/registry/aop.stressor" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://aopwiki.org/" - }, - "https://bioregistry.io/schema/#0000005": "9", - "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/stressors/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/stressors/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://aopwiki.org/stressors/9" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aop.stressor" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://www.obofoundry.org/ontology/to", + "@id": "https://registry.bio2kg.org/resource/greengenes", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/uo", + "@id": "https://registry.identifiers.org/registry/pmc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/LEPAO", + "@id": "https://registry.identifiers.org/registry/hp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/pdbj", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/upheno", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/KISAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dlxc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/gmd.gcms", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.", + "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/upheno" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unified Phenotype Ontology" + "@value": "Golm Metabolome Database GC-MS spectra" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/UPHENO" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS" }, { - "@id": "http://aber-owl.net/ontology/UPHENO" + "@id": "https://registry.identifiers.org/registry/gmd.gcms" }, { - "@id": "https://www.obofoundry.org/ontology/upheno" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://gmd.mpimp-golm.mpg.de/" + }, + "https://bioregistry.io/schema/#0000005": "53d583d8-40c6-40e1-9296-23f821cd77a5", + "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1", + "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/Spectrums/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://gmd.mpimp-golm.mpg.de/Spectrums/53d583d8-40c6-40e1-9296-23f821cd77a5" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gmd.gcms" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/rexo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Regulation of Gene Expression", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Regulation of Gene Expression Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.r41qhx" + "@id": "http://aber-owl.net/ontology/REXO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UPHENO" + "@id": "https://bioportal.bioontology.org/ontologies/REXO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO" + "@id": "https://fairsharing.org/FAIRsharing.recas1" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "evolutionary biology" - }, - { - "@value": "obo" - }, { "@value": "ontology" }, { - "@value": "phenomics" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/upheno" + "@id": "http://www.semantic-systems-biology.org/apo" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UPHENO_$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/upheno.owl" + "@id": "https://www.bio.ntnu.no/ontology/ReXO/rexo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5208-3432" + "@id": "https://orcid.org/0000-0002-1171-9876" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UPHENO_", "https://bioregistry.io/schema/#0000029": { - "@value": "upheno" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ec-code", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "rexo" } }, { - "@id": "https://bioregistry.io/registry/nif.dysfunction", + "@id": "https://bioregistry.io/registry/merops.clan", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://bioregistry.io/registry/merops" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Dysfunction" + "@value": "MEROPS Clan" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION" - }, - { - "@id": "https://www.obofoundry.org/ontology/nif_dysfunction" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neuinfo.org/" + "@id": "https://www.ebi.ac.uk/merops" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4752-543X" + "https://bioregistry.io/schema/#0000005": "IA", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=IA" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_", "https://bioregistry.io/schema/#0000029": { - "@value": "nif.dysfunction" - } - }, - { - "@id": "https://registry.identifiers.org/registry/genatlas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OLATDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/plasmodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/EHDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/orthodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "merops.clan" } }, { - "@id": "https://www.re3data.org/repository/r3d100012715", + "@id": "https://www.re3data.org/repository/r3d100011166", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/d1id", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/jcsd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/metnetdb", + "@id": "https://bioregistry.io/registry/nucleardb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another.", + "http://purl.org/dc/terms/description": "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolic Network Exchange Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/metnetdb" + "@value": "NucleaRDB" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "regulation" - }, - { - "@value": "protein" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "interaction" + "@id": "https://registry.identifiers.org/registry/nuclearbd" }, { - "@value": "pathway" + "@id": "https://registry.bio2kg.org/resource/nucleardb" }, { - "@value": "small molecule" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd" }, { - "@value": "rna" + "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "classification" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.metnetdb.org/MetNet_db.htm" + "@id": "http://www.receptors.org/nucleardb/" }, - "https://bioregistry.io/schema/#0000005": "377369", - "https://bioregistry.io/schema/#0000006": "http://metnetonline.org/browse_pathway2.php?pthID=$1", + "https://bioregistry.io/schema/#0000005": "prgr_human", + "https://bioregistry.io/schema/#0000006": "http://www.receptors.org/nucleardb/proteins/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+\\_\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000023": { + "@value": "nuclearbd" }, - "https://bioregistry.io/schema/#0000024": "http://metnetonline.org/browse_pathway2.php?pthID=", + "https://bioregistry.io/schema/#0000024": "http://www.receptors.org/nucleardb/proteins/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://metnetonline.org/browse_pathway2.php?pthID=377369" + "@id": "http://www.receptors.org/nucleardb/proteins/prgr_human" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metnetdb" + "@value": "nucleardb" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ss78t4", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh", + "@id": "http://aber-owl.net/ontology/MI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://orcid.org/0000-0001-9202-5309", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chen Yang" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "chenyangnutrition@gmail.com" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/dbvar.study", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Studies in dbVar.", + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Genomic Structural Variation - Study" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/dbvar" - }, - "https://bioregistry.io/schema/#0000005": "nstd102", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "dbvar.studies" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/dbvar/studies/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd102" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbvar.study" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p3bzqb", + "@id": "https://registry.identifiers.org/registry/sdbs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHD", + "@id": "https://bioregistry.io/metaregistry/biocontext/SPD", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/mmmp:biomaps", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/registry/go.rule", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/go" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Ontology Rules" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/geneontology/go-site/tree/master/metadata/rules" + }, + "https://bioregistry.io/schema/#0000005": "0000004", + "https://bioregistry.io/schema/#0000006": "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/go.rule:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000004.md" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "go.rule" } }, { - "@id": "https://www.uniprot.org/database/DB-0139", + "@id": "http://aber-owl.net/ontology/COLAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/uniref", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-6680-578X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jeffrey A. Detras" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "j.detras@cgiar.org" } }, { - "@id": "https://fairsharing.org/FAIRsharing.w6cxgb", + "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/gnpis", + "@id": "https://bioregistry.io/registry/arxiv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.", + "http://purl.org/dc/terms/description": "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GnpIS" + "@value": "arXiv" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gnpis" + "@id": "http://www.wikidata.org/entity/P818" }, { - "@id": "https://fairsharing.org/FAIRsharing.dw22y3" + "@id": "https://bartoc.org/en/node/20434" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS" + "@id": "https://registry.identifiers.org/registry/arxiv" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV" }, { - "@id": "https://www.re3data.org/repository/r3d100012647" + "@id": "https://registry.bio2kg.org/resource/arxiv" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" + "@value": "bibliography" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://urgi.versailles.inra.fr/gnpis/" + "@id": "https://arxiv.org/" }, - "https://bioregistry.io/schema/#0000005": "AY109603", - "https://bioregistry.io/schema/#0000006": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000005": "0807.4956v1", + "https://bioregistry.io/schema/#0000006": "https://arxiv.org/abs/$1", + "https://bioregistry.io/schema/#0000008": "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3001-4908" - }, - "https://bioregistry.io/schema/#0000024": "https://urgi.versailles.inra.fr/gnpis/#result/term=", + "https://bioregistry.io/schema/#0000024": "https://arxiv.org/abs/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://urgi.versailles.inra.fr/gnpis/#result/term=AY109603" + "@id": "https://arxiv.org/abs/0807.4956v1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gnpis" + "@value": "arxiv" } }, { - "@id": "https://bioregistry.io/registry/datacommons", + "@id": "https://bioregistry.io/registry/gexo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces.", + "http://purl.org/dc/terms/description": "Gene Expression Ontology", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/datacommonsorg/website" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Data Commons" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid" + "@value": "Gene Expression Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.3e0sn4" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo" + }, + { + "@id": "http://aber-owl.net/ontology/GEXO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GEXO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://datacommons.org" + "@id": "http://www.semantic-systems-biology.org/apo" }, - "https://bioregistry.io/schema/#0000005": "Gene", - "https://bioregistry.io/schema/#0000006": "https://datacommons.org/browser/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000010": { + "@id": "https://www.bio.ntnu.no/ontology/GeXO/gexo.owl" }, - "https://bioregistry.io/schema/#0000024": "https://datacommons.org/browser/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://datacommons.org/browser/Gene" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1171-9876" }, "https://bioregistry.io/schema/#0000029": { - "@value": "datacommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/prosite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/REX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OBA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012015", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "gexo" } }, { - "@id": "https://bioregistry.io/registry/puro", + "@id": "https://bioregistry.io/registry/nif.dysfunction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/pro" - }, + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Publishing Roles Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.3e88d6" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "NIF Dysfunction" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION" + }, + { + "@id": "https://www.obofoundry.org/ontology/nif_dysfunction" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "ontology" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/pro" + "@id": "http://neuinfo.org/" }, - "https://bioregistry.io/schema/#0000005": "RoleInTime", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/pro/$1", - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/pro/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/pro/RoleInTime" + "@id": "https://orcid.org/0000-0003-4752-543X" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_", "https://bioregistry.io/schema/#0000029": { - "@value": "puro" + "@value": "nif.dysfunction" } }, { - "@id": "http://aber-owl.net/ontology/REXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0002-2548-641X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sirarat Sarntivijai" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "siiraa@umich.edu" } }, { - "@id": "https://bioregistry.io/registry/novus", + "@id": "https://bioregistry.io/registry/microscope", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vendor of antibodies and other biologics", + "http://purl.org/dc/terms/description": "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Novus Biologicals" + "@value": "MicroScope" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/microscope" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3t5qc3" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012928" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "comparative genomics" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.novusbio.com" + "@id": "http://www.genoscope.cns.fr/agc/microscope" }, - "https://bioregistry.io/schema/#0000005": "nb100-56351", - "https://bioregistry.io/schema/#0000006": "https://www.novusbio.com/products/$1", + "https://bioregistry.io/schema/#0000005": "5601141", + "https://bioregistry.io/schema/#0000006": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.novusbio.com/products/", + "https://bioregistry.io/schema/#0000024": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.novusbio.com/products/nb100-56351" + "@id": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=5601141" }, "https://bioregistry.io/schema/#0000029": { - "@value": "novus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "microscope" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PR", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/exac.transcript", + "@id": "https://registry.identifiers.org/registry/dg.f82a1a", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y00hz4", + "@id": "http://edamontology.org/data_1129", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://aber-owl.net/ontology/OHD", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE", + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100013547", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/begdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bdgp.est", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/datanator.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO", + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/wgs84", + "@id": "https://bioregistry.io/registry/dg5b0d", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum", + "http://purl.org/dc/terms/description": "The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WGS84 Geo Positioning" + "@value": "BloodPAC" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs" + "@id": "https://registry.identifiers.org/registry/dg.5b0d" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/2003/01/geo/wgs84_pos" + "@id": "https://data.bloodpac.org/." }, - "https://bioregistry.io/schema/#0000005": "latitude", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/01/geo/wgs84_pos#$1", + "https://bioregistry.io/schema/#0000005": "00000d53-99bc-4d3e-8ed7-6dc358baccb7", + "https://bioregistry.io/schema/#0000006": "https://data.bloodpac.org/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/01/geo/wgs84_pos#", + "https://bioregistry.io/schema/#0000024": "https://data.bloodpac.org/ga4gh/drs/v1/objects/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2003/01/geo/wgs84_pos#latitude" + "@id": "https://data.bloodpac.org/ga4gh/drs/v1/objects/00000d53-99bc-4d3e-8ed7-6dc358baccb7" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wgs84" + "@value": "dg5b0d" } }, { - "@id": "http://www.ontobee.org/ontology/MIAPA", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGSF", + "@id": "https://fairsharing.org/FAIRsharing.cb7086", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/splicenest", + "@id": "https://bioregistry.io/registry/gmd.profile", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome.", + "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SpliceNest" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/splicenest" + "@value": "Golm Metabolome Database Profile" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "dna" + "@id": "https://registry.identifiers.org/registry/gmd.profile" }, { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://splicenest.molgen.mpg.de/" - }, - "https://bioregistry.io/schema/#0000005": "Hs635", - "https://bioregistry.io/schema/#0000006": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "http://gmd.mpimp-golm.mpg.de/" }, - "https://bioregistry.io/schema/#0000024": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=", + "https://bioregistry.io/schema/#0000005": "10b38aaf-b977-4950-85b8-f4775f66658d", + "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1", + "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=Hs635" + "@id": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=10b38aaf-b977-4950-85b8-f4775f66658d" }, "https://bioregistry.io/schema/#0000029": { - "@value": "splicenest" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6bd5k6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "gmd.profile" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SIBO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/edam", + "@id": "https://registry.bio2kg.org/resource/kegg.disease", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.pdwqcr", + "@id": "https://www.uniprot.org/database/DB-0073", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/orphanet", + "@id": "https://bioregistry.io/registry/biosample", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.", + "http://purl.org/dc/terms/description": "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Orphanet" + "@value": "BioSample" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6bd5k6" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample" }, { - "@id": "https://registry.bio2kg.org/resource/orphanet" + "@id": "https://registry.identifiers.org/registry/biosample" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE" }, { - "@id": "https://www.uniprot.org/database/DB-0068" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples" }, { - "@id": "http://www.wikidata.org/entity/P1550" + "@id": "https://www.re3data.org/repository/r3d100012828" }, { - "@id": "https://registry.identifiers.org/registry/orphanet" + "@id": "https://fairsharing.org/FAIRsharing.qr6pqk" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology and terminology" + "@value": "biology" }, { - "@value": "human" + "@value": "cell" }, { - "@value": "disease" + "@value": "gold standard" }, { - "@value": "drug" + "@value": "dna" }, { - "@value": "life science" + "@value": "stem cell" + }, + { + "@value": "cell line" + }, + { + "@value": "rna" + }, + { + "@value": "biomaterial" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.orpha.net/consor/" + "@id": "https://www.ebi.ac.uk/biosamples/" }, - "https://bioregistry.io/schema/#0000005": "85163", - "https://bioregistry.io/schema/#0000006": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "SAMEA2397676", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biosamples/sample/$1", + "https://bioregistry.io/schema/#0000008": "^SAM[NED](\\w)?\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "ORPHA" + "@value": "biosamples" }, - "https://bioregistry.io/schema/#0000024": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biosamples/sample/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=85163" + "@id": "https://www.ebi.ac.uk/biosamples/sample/SAMEA2397676" }, "https://bioregistry.io/schema/#0000029": { - "@value": "orphanet" - } - }, - { - "@id": "https://orcid.org/0000-0003-3456-2493", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yaroslav Halchenko" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "yoh@dartmouth.edu" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/imr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://edamontology.org/data_2634", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.s5zmbp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NDFRT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "biosample" } }, { - "@id": "https://bioregistry.io/registry/interpro", + "@id": "https://bioregistry.io/registry/ehda", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://proteinswebteam.github.io/interpro-blog/" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "InterPro" + "@value": "Human developmental anatomy, timed version" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/interpro" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pda11d" - }, - { - "@id": "https://www.uniprot.org/database/DB-0052" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro" - }, - { - "@id": "http://www.wikidata.org/entity/P2926" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010798" + "@id": "https://registry.bio2kg.org/resource/ehda" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPR" + "@id": "http://aber-owl.net/ontology/EHDA" }, { - "@id": "https://www.obofoundry.org/ontology/ipr" + "@id": "https://www.obofoundry.org/ontology/ehda" }, { - "@id": "http://edamontology.org/data_1133" + "@id": "https://bioportal.bioontology.org/ontologies/EHDA" }, { - "@id": "https://registry.bio2kg.org/resource/interpro" + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "development" }, { - "@value": "biology" + "@value": "human" }, { - "@value": "domain" + "@value": "ontology" }, { - "@value": "bioinformatics" + "@value": "anatomy" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/interpro/index.html" + "@id": "http://genex.hgu.mrc.ac.uk/" }, - "https://bioregistry.io/schema/#0000005": "IPR016380", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IPR_$1", - "https://bioregistry.io/schema/#0000008": "^IPR\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Na8a26c21d620429599673f6ff0542396" + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/EHDA/6/ehda.obo" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "IPR" - }, - { - "@value": "InterPro" - }, - { - "@value": "IP" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IPR_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/IPR_IPR016380" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N559401d0120e4ad591fe8463d3f0d80f" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDA_", "https://bioregistry.io/schema/#0000029": { - "@value": "interpro" + "@value": "ehda" } }, { - "@id": "_:Na8a26c21d620429599673f6ff0542396", + "@id": "_:N559401d0120e4ad591fe8463d3f0d80f", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "InterPro Help" + "@value": "Jonathan Bard" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "interhelp@ebi.ac.uk" + "@value": "J.Bard@ed.ac.uk" } }, { - "@id": "https://bioregistry.io/registry/dermo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.orthology", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/kegg" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Dermatological Disease Ontology" + "@value": "KEGG Orthology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/DERMO" + "@id": "https://registry.identifiers.org/registry/kegg.orthology" }, { - "@id": "https://fairsharing.org/FAIRsharing.k008w7" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DERMO" + "@id": "https://registry.bio2kg.org/resource/kegg.orthology" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "pathway" }, { - "@value": "dermatology" + "@value": "classification" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DERMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/DERMO/10/dermo.obo" + "@id": "http://www.genome.jp/kegg/ko.html" }, + "https://bioregistry.io/schema/#0000005": "K00001", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^K\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5111-7263" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DERMO_", + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DERMO_0000000" + "@id": "http://www.kegg.jp/entry/K00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dermo" + "@value": "kegg.orthology" } }, { - "@id": "http://aber-owl.net/ontology/VSAO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.v0hbjs", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/ONE", + "@id": "https://registry.bio2kg.org/resource/ccd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/civic.did", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/civic" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Disease" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.did" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "46", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/diseases/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/diseases/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/diseases/46" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.did" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/drsanv0", + "@id": "https://bioregistry.io/registry/geonames.feature", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research. ", + "http://purl.org/dc/terms/description": "All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AnVIL DRS" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/drs.anv0" + "@value": "GeoNames Feature Code" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.gov/" + "@id": "https://www.geonames.org/export/codes.html" }, - "https://bioregistry.io/schema/#0000005": "v2_1b0f158a-86e2-3887-b990-89e3cf2d9082", - "https://bioregistry.io/schema/#0000006": "https://data.terra.bio/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000005": "ADM1", + "https://bioregistry.io/schema/#0000006": "https://www.geonames.org/recent-changes/featurecode/$1/", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://data.terra.bio/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/geonames.feature:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://data.terra.bio/ga4gh/drs/v1/objects/v2_1b0f158a-86e2-3887-b990-89e3cf2d9082" + "@id": "https://www.geonames.org/recent-changes/featurecode/ADM1/" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drsanv0" + "@value": "geonames.feature" } }, { - "@id": "https://bioregistry.io/registry/ega.dataset", + "@id": "https://bioregistry.io/registry/dbsnp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.", + "http://purl.org/dc/terms/description": "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Genome-phenome Archive Dataset" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ncbi/dbsnp/tree/master/tutorials" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "dbSNP Reference SNP number" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100011242" + "@id": "https://registry.identifiers.org/registry/dbsnp" }, { - "@id": "https://registry.identifiers.org/registry/ega.dataset" + "@id": "https://www.uniprot.org/database/DB-0013" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset" + "@id": "https://fairsharing.org/FAIRsharing.edxb58" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET" + "@id": "https://registry.bio2kg.org/resource/dbsnp" }, { - "@id": "https://fairsharing.org/FAIRsharing.mya1ff" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P6861" + }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp" }, { - "@value": "phenomics" + "@id": "http://edamontology.org/data_1106" }, { - "@value": "genomics" + "@id": "https://www.re3data.org/repository/r3d100010652" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP" }, { - "@value": "clinical studies" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ega-archive.org/" - }, - "https://bioregistry.io/schema/#0000005": "EGAD00000000001", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ega/datasets/$1", - "https://bioregistry.io/schema/#0000008": "^EGAD\\d{11}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ega/datasets/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ega/datasets/EGAD00000000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ega.dataset" - } - }, - { - "@id": "https://orcid.org/0000-0003-4446-6200", - "http://www.w3.org/2000/01/rdf-schema#label": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP" + }, { - "@value": "Jessica Kissinger" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284" }, { - "@value": "Omar Harb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP" } ], - "http://xmlns.com/foaf/0.1/mbox": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "jkissing@uga.edu" + "@value": "life science" }, { - "@value": "oharb@pcbi.upenn.edu" + "@value": "genome" } - ] - }, - { - "@id": "http://www.wikidata.org/entity/P2646", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/snp/" + }, + "https://bioregistry.io/schema/#0000005": "rs121909098", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/snp/$1", + "https://bioregistry.io/schema/#0000008": "^rs\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/snp/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/snp/rs121909098" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dbsnp" } }, { - "@id": "https://registry.identifiers.org/registry/multicellds.cell_line", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/gbif", + "@id": "https://bioregistry.io/registry/iobc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth.", + "http://purl.org/dc/terms/description": "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\".", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/gbif/" + "@id": "https://github.com/kushidat/IOBC" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Global Biodiversity Information Facility" + "@value": "Interlinking Ontology for Biological Concepts" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100000039" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zv11j3" - }, - { - "@id": "http://www.wikidata.org/entity/P846" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "natural science" - }, - { - "@value": "metagenomics" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "natural history" - }, - { - "@value": "marine biology" - }, - { - "@value": "taxonomy" + "@id": "https://bioportal.bioontology.org/ontologies/IOBC" }, { - "@value": "biodiversity" + "@id": "http://aber-owl.net/ontology/IOBC" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gbif.org/species" + "@id": "https://github.com/kushidat/IOBC" + }, + "https://bioregistry.io/schema/#0000005": "200906038218908385", + "https://bioregistry.io/schema/#0000006": "http://purl.jp/bio/4/id/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/IOBC/25/iobc.owl" }, - "https://bioregistry.io/schema/#0000005": "4238", - "https://bioregistry.io/schema/#0000006": "https://www.gbif.org/species/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6215-3617" + "@id": "https://orcid.org/0000-0002-0784-4113" }, - "https://bioregistry.io/schema/#0000024": "https://www.gbif.org/species/", + "https://bioregistry.io/schema/#0000024": "http://purl.jp/bio/4/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gbif.org/species/4238" + "@id": "http://purl.jp/bio/4/id/200906038218908385" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gbif" + "@value": "iobc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/atc", + "@id": "https://bioregistry.io/registry/neurovault.collection", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.", + "http://purl.org/dc/terms/description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anatomical Therapeutic Chemical Classification System" + "@value": "NeuroVault Collection" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ATC" - }, - { - "@id": "https://registry.identifiers.org/registry/atc" - }, - { - "@id": "https://bartoc.org/en/node/449" - }, - { - "@id": "https://registry.bio2kg.org/resource/atc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1a27h8" - }, - { - "@id": "http://www.wikidata.org/entity/P267" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73" - }, - { - "@id": "http://edamontology.org/data_3103" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ATC" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pharmacology" - }, - { - "@value": "ontology" - }, - { - "@value": "chemical" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection" }, { - "@value": "chemical biology" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION" }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/neurovault.collection" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.whocc.no/atc_ddd_index/" + "@id": "http://neurovault.org" }, - "https://bioregistry.io/schema/#0000005": "A10BA02", - "https://bioregistry.io/schema/#0000006": "http://www.whocc.no/atc_ddd_index/?code=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$", + "https://bioregistry.io/schema/#0000005": "3304", + "https://bioregistry.io/schema/#0000006": "https://neurovault.org/collections/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Na07a21f763194c74863294891350cae6" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "ATTC" - }, - { - "@value": "ATC_code" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.whocc.no/atc_ddd_index/?code=", + "https://bioregistry.io/schema/#0000024": "https://neurovault.org/collections/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.whocc.no/atc_ddd_index/?code=A10BA02" + "@id": "https://neurovault.org/collections/3304" }, "https://bioregistry.io/schema/#0000029": { - "@value": "atc" + "@value": "neurovault.collection" } }, { - "@id": "_:Na07a21f763194c74863294891350cae6", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WHO Collaborating Centre for Drug Statistics Methodology" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "whocc@fhi.no" + "@id": "https://fairsharing.org/FAIRsharing.wvp1t7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/trans", + "@id": "https://registry.identifiers.org/registry/grin.taxonomy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/nmdc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.", + "http://purl.org/dc/terms/description": "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DiseaseOntology/PathogenTransmissionOntology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pathogen Transmission Ontology" + "@value": "National Microbiome Data Collaborative" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans" - }, - { - "@id": "http://www.ontobee.org/ontology/TRANS" - }, - { - "@id": "http://aber-owl.net/ontology/TRANS" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.nygmp7" - }, - { - "@id": "https://registry.bio2kg.org/resource/pt" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TRANS" - }, - { - "@id": "https://www.obofoundry.org/ontology/trans" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathogen" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "health science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DiseaseOntology/PathogenTransmissionOntology" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/nmdc" }, - "https://bioregistry.io/schema/#0000005": "0000024", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TRANS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/trans.owl" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "microbiome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://microbiomedata.org/" }, + "https://bioregistry.io/schema/#0000005": "y3ax-8bq3-60", + "https://bioregistry.io/schema/#0000006": "https://drs.microbiomedata.org/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[\\w\\-.]{3,}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8910-9851" + "@id": "https://orcid.org/0000-0002-8424-0604" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TRANS_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://drs.microbiomedata.org/objects/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/TRANS_0000024" + "@id": "https://drs.microbiomedata.org/objects/y3ax-8bq3-60" }, "https://bioregistry.io/schema/#0000029": { - "@value": "trans" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/nembase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bxc508", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "nmdc" } }, { - "@id": "https://bioregistry.io/registry/goldbook", + "@id": "https://bioregistry.io/registry/emaps", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry.", + "http://purl.org/dc/terms/description": "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IUPAC Gold Book Compendium of Chemical Terminology" + "@value": "Mouse Developmental Anatomy Ontology with Theiler Stage" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bartoc.org/en/node/1884" - }, - { - "@id": "http://www.wikidata.org/entity/P4732" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://goldbook.iupac.org" + "@id": "https://www.informatics.jax.org/vocab/gxd/anatomy/" }, - "https://bioregistry.io/schema/#0000005": "G02681", - "https://bioregistry.io/schema/#0000006": "https://goldbook.iupac.org/terms/view/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{1,2}\\d{5}$", + "https://bioregistry.io/schema/#0000005": "3517823", + "https://bioregistry.io/schema/#0000006": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://goldbook.iupac.org/terms/view/", + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/emapa" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0956-8634" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://goldbook.iupac.org/terms/view/G02681" + "@id": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:3517823" }, "https://bioregistry.io/schema/#0000029": { - "@value": "goldbook" + "@value": "emaps" } }, { - "@id": "https://registry.bio2kg.org/resource/bionumbers", + "@id": "https://registry.identifiers.org/registry/datanator.metabolite", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P232", + "@id": "http://aber-owl.net/ontology/MO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ATO", + "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/mgi", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap", + "@id": "http://aber-owl.net/ontology/CTENO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/opm", + "@id": "http://aber-owl.net/ontology/HCPCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.ontobee.org/ontology/SIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biostudies", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.fj07xj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_346", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://registry.identifiers.org/registry/uberon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-5739-1781", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jianjiong Gao" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gaoj@mskcc.org" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0106", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/mge", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.", + "http://purl.org/dc/terms/description": "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Orientations of Proteins in Membranes Database" + "@value": "Aclame" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPM" + "@id": "http://edamontology.org/data_2631" }, { - "@id": "https://registry.identifiers.org/registry/opm" + "@id": "https://registry.bio2kg.org/resource/aclame" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm" + "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME" }, { - "@id": "https://fairsharing.org/FAIRsharing.7c683b" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/mge" + }, { - "@value": "data management" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge" }, { - "@value": "computer science" + "@id": "https://fairsharing.org/FAIRsharing.5tfcy8" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://opm.phar.umich.edu/" - }, - "https://bioregistry.io/schema/#0000005": "1h68", - "https://bioregistry.io/schema/#0000006": "http://opm.phar.umich.edu/protein.php?pdbid=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://opm.phar.umich.edu/protein.php?pdbid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://opm.phar.umich.edu/protein.php?pdbid=1h68" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "opm" - } - }, - { - "@id": "https://bioregistry.io/registry/fossilworks.taxon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for an animal, plant, or microorganism from the fossilworks website", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/fossilworks" + "@value": "life science" + }, + { + "@value": "gene" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fossilworks Taxon" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P842" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.fossilworks.org" + "@id": "http://aclame.ulb.ac.be/" }, - "https://bioregistry.io/schema/#0000005": "40565", - "https://bioregistry.io/schema/#0000006": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "2", + "https://bioregistry.io/schema/#0000006": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000023": { + "@value": "aclame" }, - "https://bioregistry.io/schema/#0000024": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=", + "https://bioregistry.io/schema/#0000024": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=40565" + "@id": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fossilworks.taxon" + "@value": "mge" } }, { - "@id": "https://cropontology.org/ontology/CO_341", + "@id": "http://edamontology.org/data_2651", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.uniprot.org/database/DB-0162", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/fbrf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FlyBase internal citation identifiers", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://fairsharing.org/FAIRsharing.1a27h8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010861", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000028", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The pattern for expanded URIs in the given resource" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has URI pattern" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://www.wikidata.org/entity/P8966" }, { - "@id": "https://bioregistry.io/registry/flybase" + "@id": "http://identifiers.org/idot/accessIdentifierPattern" + }, + { + "@id": "http://rdfs.org/ns/void#uriRegexPattern" } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyBase Reference Report" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://flybase.org" - }, - "https://bioregistry.io/schema/#0000005": "0187632", - "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/FBrf$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/FBrf", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://flybase.org/reports/FBrf0187632" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fbrf" + ] + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b220d4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/gold.meta", + "@id": "https://bioregistry.io/registry/agricola", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.", + "http://purl.org/dc/terms/description": "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GOLD metadata" + "@value": "Agricultural Online Access" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gold.meta" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta" + "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META" + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA" + }, + { + "@id": "https://www.uniprot.org/database/DB-0266" + }, + { + "@id": "https://registry.identifiers.org/registry/agricola" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi" + "@id": "http://agricola.nal.usda.gov/" }, - "https://bioregistry.io/schema/#0000005": "Gm00047", - "https://bioregistry.io/schema/#0000006": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1", - "https://bioregistry.io/schema/#0000008": "^Gm\\d+$", + "https://bioregistry.io/schema/#0000005": "50018", + "https://bioregistry.io/schema/#0000006": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/gold" - }, - "https://bioregistry.io/schema/#0000024": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "AGR" + }, + { + "@value": "AGRICOLA_ID" + } + ], + "https://bioregistry.io/schema/#0000024": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gm00047" + "@id": "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=50018" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gold.meta" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-8688-6599", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jim Balhoff" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "balhoff@renci.org" + "@value": "agricola" } }, { - "@id": "https://bioregistry.io/registry/foodb.food", + "@id": "https://bioregistry.io/registry/pharmvar", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Foods in FooDB", + "http://purl.org/dc/terms/description": "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FooDB Food" + "@value": "Pharmacogene Variation Consortium" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food" + "@id": "https://registry.bio2kg.org/resource/pharmvar" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "variant" + }, + { + "@value": "pharmacogenomics" + }, + { + "@value": "gene" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://foodb.ca/foods" + "@id": "https://www.pharmvar.org" + }, + "https://bioregistry.io/schema/#0000005": "CYP2A6", + "https://bioregistry.io/schema/#0000006": "https://www.pharmvar.org/gene/$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/hgnc.symbol" }, - "https://bioregistry.io/schema/#0000005": "FOOD00020", - "https://bioregistry.io/schema/#0000006": "https://foodb.ca/foods/$1", - "https://bioregistry.io/schema/#0000008": "^FOOD\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://foodb.ca/foods/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.pharmvar.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://foodb.ca/foods/FOOD00020" + "@id": "https://www.pharmvar.org/gene/CYP2A6" }, "https://bioregistry.io/schema/#0000029": { - "@value": "foodb.food" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/nasc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "pharmvar" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPA", + "@id": "https://registry.identifiers.org/registry/bacmap.biog", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/tair.locus", + "@id": "https://bioregistry.io/registry/ecto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.", + "http://purl.org/dc/terms/description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EnvironmentOntology/environmental-exposure-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Arabidopsis Information Resource" + "@value": "Environmental conditions, treatments and exposures ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR" + "@id": "https://bioportal.bioontology.org/ontologies/ECTO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS" + "@id": "https://fairsharing.org/FAIRsharing.6b77ac" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO" }, { - "@id": "https://registry.bio2kg.org/resource/tair.locus" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR" + "@id": "http://www.ontobee.org/ontology/ECTO" }, { - "@id": "https://registry.identifiers.org/registry/tair.locus" + "@id": "http://aber-owl.net/ontology/ECTO" + }, + { + "@id": "https://www.obofoundry.org/ontology/ecto" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "ontology" + }, + { + "@value": "environmental science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://arabidopsis.org/index.jsp" + "@id": "https://github.com/EnvironmentOntology/environmental-exposure-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ecto.owl" }, - "https://bioregistry.io/schema/#0000005": "2200950", - "https://bioregistry.io/schema/#0000006": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:", + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/maxo" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/ncit" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/xco" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/exo" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/nbo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2908-3327" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECTO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:2200950" + "@id": "http://purl.obolibrary.org/obo/ECTO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tair.locus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ecto" } }, { - "@id": "http://www.ontobee.org/ontology/PPO", + "@id": "https://registry.bio2kg.org/resource/s_mart_db", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/co_339", + "@id": "https://bioregistry.io/registry/phipo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Lentil Trait Dictionary in template v5 - ICARDA - July 2015", + "http://purl.org/dc/terms/description": "Ontology of species-neutral phenotypes observed in pathogen-host interactions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/PHI-base/phipo" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lentil ontology" + "@value": "Pathogen Host Interaction Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ry1ezg" + "@id": "http://www.ontobee.org/ontology/PHIPO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_339" + "@id": "https://www.obofoundry.org/ontology/phipo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo" }, { - "@id": "https://cropontology.org/ontology/CO_339" + "@id": "https://bioportal.bioontology.org/ontologies/PHIPO" + }, + { + "@id": "http://aber-owl.net/ontology/PHIPO" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -40147,1395 +40449,1538 @@ "@value": "ontology" }, { - "@value": "botany" - }, - { - "@value": "life science" - }, - { - "@value": "agriculture" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_339/Lentil" + "@id": "https://github.com/PHI-base/phipo" }, - "https://bioregistry.io/schema/#0000005": "0000032", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_339:$1", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PHIPO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_339/Lentil/owl" + "@id": "http://purl.obolibrary.org/obo/phipo.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/pato" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Naea93ab07d90452c8a5dfa9ac16f0589" + "@id": "https://orcid.org/0000-0001-8941-3984" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_339:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PHIPO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_339:0000032" + "@id": "http://purl.obolibrary.org/obo/PHIPO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_339" + "@value": "phipo" } }, { - "@id": "_:Naea93ab07d90452c8a5dfa9ac16f0589", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/dragondb", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/gpmdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Global Proteome Machine Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dragondb.dna" + "@id": "https://registry.identifiers.org/registry/gpmdb" }, { - "@id": "https://bioregistry.io/registry/dragondb.protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb" }, { - "@id": "https://bioregistry.io/registry/dragondb.locus" + "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB" }, { - "@id": "https://bioregistry.io/registry/dragondb.allele" + "@id": "https://fairsharing.org/FAIRsharing.fhcmwq" } - ] + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "proteomics" + }, + { + "@value": "bioinformatics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://gpmdb.thegpm.org/" + }, + "https://bioregistry.io/schema/#0000005": "GPM32310002988", + "https://bioregistry.io/schema/#0000006": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1", + "https://bioregistry.io/schema/#0000008": "^GPM\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32310002988" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gpmdb" + } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1", + "@id": "https://registry.identifiers.org/registry/morpheus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ", + "@id": "https://registry.bio2kg.org/resource/mirnest", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/snp2tfbs", + "@id": "https://bioregistry.io/registry/biogrid.interaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/biogrid" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SNP to Transcription Factor Binding Sites" + "@value": "BioGRID Interactions" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/snp2tfbs" + "@id": "http://edamontology.org/data_2628" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ccg.epfl.ch/snp2tfbs/" - }, - "https://bioregistry.io/schema/#0000005": "rs11603840", - "https://bioregistry.io/schema/#0000006": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1", - "https://bioregistry.io/schema/#0000008": "^rs[0-9]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/dbsnp" + "@id": "https://thebiogrid.org/" }, + "https://bioregistry.io/schema/#0000005": "2649230", + "https://bioregistry.io/schema/#0000006": "https://thebiogrid.org/interaction/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9713-9994" + }, + "https://bioregistry.io/schema/#0000024": "https://thebiogrid.org/interaction/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs11603840" + "@id": "https://thebiogrid.org/interaction/2649230" }, "https://bioregistry.io/schema/#0000029": { - "@value": "snp2tfbs" + "@value": "biogrid.interaction" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST", + "@id": "https://bioregistry.io/metaregistry/biocontext/SO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/proteomicsdb.protein", + "@id": "https://bioregistry.io/registry/caro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.", + "http://purl.org/dc/terms/description": "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/caro" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProteomicsDB Protein" + "@value": "Common Anatomy Reference Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein" + "@id": "https://www.obofoundry.org/ontology/caro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN" + "@id": "http://aber-owl.net/ontology/CARO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro" + }, + { + "@id": "http://www.ontobee.org/ontology/CARO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CARO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3kcgmr" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CARO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.proteomicsdb.org/#human" + "@id": "https://github.com/obophenotype/caro/" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CARO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/caro.owl" }, - "https://bioregistry.io/schema/#0000005": "53504", - "https://bioregistry.io/schema/#0000006": "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/proteomicsdb.protein:", + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/ehdaa2" + }, + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/aism" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9114-8737" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CARO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.proteomicsdb.org/#human/proteinDetails/53504/summary" + "@id": "http://purl.obolibrary.org/obo/CARO_0000000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "proteomicsdb.protein" + "@value": "caro" } }, { - "@id": "https://orcid.org/0000-0002-9575-0255", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brendan MacLean" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "brendanx@uw.edu" + "@id": "https://www.re3data.org/repository/r3d100013263", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl", + "@id": "https://www.uniprot.org/database/DB-0223", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/rgd.qtl", + "@id": "https://bioportal.bioontology.org/ontologies/OBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biocatalogue.service", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa", + "@id": "http://www.ontobee.org/ontology/CRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/paxdb.organism", + "@id": "http://www.wikidata.org/entity/P8121", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ecyano.model", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/img.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.", + "http://purl.org/dc/terms/description": "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PaxDb Organism" + "@value": "Integrated Microbial Genomes Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM" + "@id": "https://registry.identifiers.org/registry/img.gene" }, { - "@id": "https://registry.identifiers.org/registry/paxdb.organism" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE" + }, + { + "@id": "https://registry.bio2kg.org/resource/img.gene" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pax-db.org/" + "@id": "http://img.jgi.doe.gov/" }, - "https://bioregistry.io/schema/#0000005": "9606", - "https://bioregistry.io/schema/#0000006": "http://pax-db.org/#!species/$1", + "https://bioregistry.io/schema/#0000005": "638309541", + "https://bioregistry.io/schema/#0000006": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pax-db.org/#!species/", + "https://bioregistry.io/schema/#0000024": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pax-db.org/#!species/9606" + "@id": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=638309541" }, "https://bioregistry.io/schema/#0000029": { - "@value": "paxdb.organism" + "@value": "img.gene" } }, { - "@id": "https://orcid.org/0000-0001-6689-0104", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Neil McKenna" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nmckenna@bcm.edu" + "@id": "https://registry.bio2kg.org/resource/iresite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0003-1719-1651", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Raimond Winslow" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rwinslow@jhu.edu" + "@id": "https://registry.identifiers.org/registry/noncodev4.rna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dx30m8", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.uniprot.org/database/DB-0106", + "@id": "https://www.uniprot.org/database/DB-0147", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3e0sn4", + "@id": "https://bioregistry.io/metaregistry/biocontext/PCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CTCAE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_2667", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6hna78", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0003-4028-811X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Josh Moore" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "j.a.moore@dundee.ac.uk" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P3853", + "@id": "https://www.re3data.org/repository/r3d100012321", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/bioregistry", + "@id": "https://fairsharing.org/FAIRsharing.3da56b", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/schema", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.", + "http://purl.org/dc/terms/description": "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/biopragmatics/bioregistry" + "@id": "http://github.com/schemaorg/schemaorg" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioregistry" + "@value": "Schema.org" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.250a8c" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http" }, { - "@id": "https://bartoc.org/en/node/18951" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/SCHEMAORG" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema" }, { - "@value": "computational biology" + "@id": "https://fairsharing.org/FAIRsharing.hzdzq8" }, { - "@value": "cheminformatics" + "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@value": "ontology and terminology" + "@value": "computer science" }, { - "@value": "computational chemistry" + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioregistry.io" + "@id": "https://schema.org" + }, + "https://bioregistry.io/schema/#0000005": "Person", + "https://bioregistry.io/schema/#0000006": "https://schema.org/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://schema.org/version/latest/schemaorg-all-http.rdf" }, - "https://bioregistry.io/schema/#0000005": "bioregistry", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/registry/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "_:N267f4cae13944491a75150835ad69478" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/registry/", + "https://bioregistry.io/schema/#0000023": { + "@value": "schemaorg" + }, + "https://bioregistry.io/schema/#0000024": "https://schema.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/registry/bioregistry" + "@id": "https://schema.org/Person" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bioregistry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "schema" } }, { - "@id": "https://www.re3data.org/repository/r3d100011936", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "_:N267f4cae13944491a75150835ad69478", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Josef Hardi" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "johardi@stanford.edu" } }, { - "@id": "https://bioregistry.io/registry/dg.f82a1a", + "@id": "https://bioregistry.io/registry/mosaic", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", + "http://purl.org/dc/terms/description": "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/DataONEorg/sem-prov-ontologies" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kids First" + "@value": "MOSAiC Ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.f82a1a" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/MOSAIC" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://kidsfirstdrc.org" + "@id": "https://ontologies.dataone.org/MOSAiC.html" + }, + "https://bioregistry.io/schema/#0000005": "00005643", + "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/MOSAIC_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://ontologies.dataone.org/MOSAiC.owl" }, - "https://bioregistry.io/schema/#0000005": "00026f50-858a-446b-8ed9-b0e3ecd7b20e", - "https://bioregistry.io/schema/#0000006": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0381-3766" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/MOSAIC_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/00026f50-858a-446b-8ed9-b0e3ecd7b20e" + "@id": "https://purl.dataone.org/odo/MOSAIC_00005643" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dg.f82a1a" + "@value": "mosaic" } }, { - "@id": "https://bioregistry.io/registry/hgnc.symbol", + "@id": "https://bioregistry.io/registry/lipidmaps", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.", + "http://purl.org/dc/terms/description": "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HGNC gene symbol" + "@value": "LIPID MAPS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P353" + "@id": "http://edamontology.org/data_2625" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL" + "@id": "https://registry.bio2kg.org/resource/lipidmaps" }, { - "@id": "https://registry.identifiers.org/registry/hgnc.symbol" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genenames.org/" - }, - "https://bioregistry.io/schema/#0000005": "DAPK1", - "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9_]+(\\@)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=DAPK1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hgnc.symbol" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OHD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/chembl.target", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://fairsharing.org/FAIRsharing.cpneh8" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.identifiers.org/registry/lipidmaps" }, { - "@id": "https://bioregistry.io/registry/chembl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps" + }, + { + "@id": "http://www.wikidata.org/entity/P2063" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012315" + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000564" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChEMBL target" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET" + "@value": "taxonomy" }, { - "@id": "https://registry.identifiers.org/registry/chembl.target" + "@value": "lipid" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets" + "@value": "systems biology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target" + "@value": "biomedical science" + }, + { + "@value": "life science" + }, + { + "@value": "endocrinology" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chembldb/" + "@id": "http://www.lipidmaps.org" }, - "https://bioregistry.io/schema/#0000005": "CHEMBL3467", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/target/inspect/$1", - "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", + "https://bioregistry.io/schema/#0000005": "LMPR0102010012", + "https://bioregistry.io/schema/#0000006": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1", + "https://bioregistry.io/schema/#0000008": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0294-5484" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ChEMBL-Targets" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/target/inspect/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "LIPID_MAPS_class" + }, + { + "@value": "LIPID MAPS" + }, + { + "@value": "LIPID_MAPS_instance" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/chembl/target/inspect/CHEMBL3467" + "@id": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=LMPR0102010012" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chembl.target" + "@value": "lipidmaps" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS", + "@id": "https://www.obofoundry.org/ontology/ovae", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ADW", + "@id": "https://www.re3data.org/repository/r3d100010180", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic", + "@id": "http://edamontology.org/data_1174", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://www.ontobee.org/ontology/HSO", + "@id": "https://registry.bio2kg.org/resource/isfinder", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c55d5e", + "@id": "https://bioregistry.io/registry/wos", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-2265-5572", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael Y Galperin" + "@value": "Web of Science ID (work)" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cogs@ncbi.nlm.nih.gov" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P8372" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.webofscience.com" + }, + "https://bioregistry.io/schema/#0000005": "000177759000002", + "https://bioregistry.io/schema/#0000006": "https://www.webofscience.com/wos/woscc/full-record/WOS:$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "wosid" + }, + { + "@value": "wosuid" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.webofscience.com/wos/woscc/full-record/WOS:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.webofscience.com/wos/woscc/full-record/WOS:000177759000002" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wos" } }, { - "@id": "http://www.ontobee.org/ontology/HOM", + "@id": "https://fairsharing.org/FAIRsharing.c7w81a", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://orcid.org/0000-0001-8638-8525", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fernanda Dorea" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "fernanda.dorea@sva.se" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wkaakq", + "@id": "https://registry.identifiers.org/registry/addgene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/modeldb.concept", + "@id": "https://fairsharing.org/FAIRsharing.c54ywe", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/sasap", + "@id": "https://bioregistry.io/registry/hsdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities.", + "http://purl.org/dc/terms/description": "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The State of Alaska's Salmon and People Ontology" + "@value": "Hazardous Substances Data Bank" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/SASAP" - }, - { - "@id": "http://aber-owl.net/ontology/SASAP" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P2062" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DataONEorg/sem-prov-ontologies" + "@id": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb" }, - "https://bioregistry.io/schema/#0000005": "00000101", - "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/SASAP_$1", + "https://bioregistry.io/schema/#0000005": "5621", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SASAP/2/sasap.owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" - }, - "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/SASAP_", + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://purl.dataone.org/odo/SASAP_00000101" + "@id": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/5621" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sasap" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "hsdb" } }, { - "@id": "https://registry.identifiers.org/registry/aop.relationships", + "@id": "https://registry.identifiers.org/registry/gxa.expt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_341", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5Pze7l", + "@id": "https://bartoc.org/en/node/20052", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/complexportal", + "@id": "https://bioregistry.io/registry/autdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.", + "http://purl.org/dc/terms/description": "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Complex Portal" + "@value": "AutDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P7718" - }, - { - "@id": "https://registry.identifiers.org/registry/complexportal" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal" - }, - { - "@id": "https://www.uniprot.org/database/DB-0228" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal" + "@id": "https://registry.identifiers.org/registry/autdb" }, { - "@id": "https://www.re3data.org/repository/r3d100013295" + "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/complexportal" + "@id": "http://autism.mindspec.org/autdb/" }, - "https://bioregistry.io/schema/#0000005": "CPX-263", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/complexportal/complex/$1", - "https://bioregistry.io/schema/#0000008": "^CPX-[0-9]+$", + "https://bioregistry.io/schema/#0000005": "ADA", + "https://bioregistry.io/schema/#0000006": "http://autism.mindspec.org/GeneDetail/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]+[A-Z-0-9]{2,}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ComplexPortal" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/complexportal/complex/", + "https://bioregistry.io/schema/#0000024": "http://autism.mindspec.org/GeneDetail/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/complexportal/complex/CPX-263" + "@id": "http://autism.mindspec.org/GeneDetail/ADA" }, "https://bioregistry.io/schema/#0000029": { - "@value": "complexportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/csd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mesh.2012", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "autdb" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression", + "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/rna_sstrand", + "@id": "https://bioregistry.io/registry/abcam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database.", + "http://purl.org/dc/terms/description": "Vendor for assays, cells, and antibodies", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNA SSTRAND" + "@value": "Abcam" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/rna_sstrand" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "rna" - }, - { - "@value": "structure" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.rnasoft.ca/sstrand" + "@id": "https://www.abcam.com" }, - "https://bioregistry.io/schema/#0000005": "CRW_00469", - "https://bioregistry.io/schema/#0000006": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1", + "https://bioregistry.io/schema/#0000005": "ab275461", + "https://bioregistry.io/schema/#0000006": "https://www.abcam.com/$1.html", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/abcam:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=CRW_00469" + "@id": "https://www.abcam.com/ab275461.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rna_sstrand" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "abcam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl", + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB", + "@id": "https://www.re3data.org/repository/r3d100011285", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/exo", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/geonames", + "@id": "https://bioregistry.io/registry/goche", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.", + "http://purl.org/dc/terms/description": "Represent chemical entities having particular CHEBI roles", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/geneontology/go-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeoNames" + "@value": "GO Chemicals" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.6dba71" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010245" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "geoinformatics" - }, - { - "@value": "geography" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.geonames.org" + "@id": "https://github.com/geneontology/go-ontology" }, - "https://bioregistry.io/schema/#0000005": "3532759", - "https://bioregistry.io/schema/#0000006": "https://www.geonames.org/$1", + "https://bioregistry.io/schema/#0000005": "25512", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/goche/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/imports/chebi_roles.owl" + }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": [ { - "@value": "Geonamaes" + "@value": "go.chemicals" }, { - "@value": "Geomames" + "@value": "go.chemical" + }, + { + "@value": "go.chebi" } ], - "https://bioregistry.io/schema/#0000024": "https://www.geonames.org/", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/goche/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.geonames.org/3532759" + "@id": "https://biopragmatics.github.io/providers/goche/25512" }, "https://bioregistry.io/schema/#0000029": { - "@value": "geonames" + "@value": "goche" } }, { - "@id": "https://bioregistry.io/registry/stitch", + "@id": "https://bioregistry.io/registry/dinto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature.", + "http://purl.org/dc/terms/description": "A formal represention for drug-drug interactions knowledge.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/labda/DINTO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Search Tool for Interactions of Chemicals" + "@value": "The Drug-Drug Interactions Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/stitch" + "@id": "http://aber-owl.net/ontology/DINTO" }, { - "@id": "https://registry.identifiers.org/registry/stitch" + "@id": "http://www.ontobee.org/ontology/DINTO" }, { - "@id": "https://fairsharing.org/FAIRsharing.zhwa8x" + "@id": "https://www.obofoundry.org/ontology/dinto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH" + "@id": "https://bioportal.bioontology.org/ontologies/DINTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch" + "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "interaction" - }, - { - "@value": "small molecule" + "@value": "obo" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://stitch.embl.de/" + "@id": "http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto" }, - "https://bioregistry.io/schema/#0000005": "BQJCRHHNABKAKU", - "https://bioregistry.io/schema/#0000006": "http://stitch.embl.de/interactions/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{14}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://stitch.embl.de/interactions/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://stitch.embl.de/interactions/BQJCRHHNABKAKU" + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DINTO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/dinto.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N9c7ccd46735d4414b9be37bf3980a722" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DINTO_", "https://bioregistry.io/schema/#0000029": { - "@value": "stitch" + "@value": "dinto" } }, { - "@id": "https://registry.bio2kg.org/resource/biogrid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "_:N9c7ccd46735d4414b9be37bf3980a722", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Maria Herrero" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "maria.herrero@kcl.ac.uk" } }, { - "@id": "https://fairsharing.org/FAIRsharing.k893xa", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/funcbase.fly", + "@id": "https://registry.identifiers.org/registry/plasmodb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/drugbank", + "@id": "https://bioregistry.io/registry/metabolights", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/drugbank.category" - }, - { - "@id": "https://bioregistry.io/registry/drugbank.bioentity" - }, - { - "@id": "https://bioregistry.io/registry/drugbank.salt" - } - ], + "http://purl.org/dc/terms/description": "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank" + "@value": "MetaboLights Compound" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010544" - }, - { - "@id": "https://registry.bio2kg.org/resource/drugbank" - }, - { - "@id": "https://registry.identifiers.org/registry/drugbank" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank" - }, - { - "@id": "https://bartoc.org/en/node/18377" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank" + "@id": "https://www.re3data.org/repository/r3d100011556" }, { - "@id": "https://fairsharing.org/FAIRsharing.353yat" + "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS" }, { - "@id": "http://edamontology.org/data_2326" + "@id": "http://www.wikidata.org/entity/P3890" }, { - "@id": "https://www.uniprot.org/database/DB-0019" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights" }, { - "@id": "http://www.wikidata.org/entity/P715" - }, + "@id": "https://registry.identifiers.org/registry/metabolights" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/metabolights/" + }, + "https://bioregistry.io/schema/#0000005": "MTBLS1", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metabolights/$1", + "https://bioregistry.io/schema/#0000008": "^MTBLS\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metabolights/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/metabolights/MTBLS1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metabolights" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/pubchem.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell Lines in PubChem", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank" + "@id": "https://bioregistry.io/registry/pubchem" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000406" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubChem Cell Line" + }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "biomedical science" + "@value": "cell lines" }, { - "@value": "drug" + "@value": "bioactivities" }, { - "@value": "protein" + "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.drugbank.ca" + "@id": "https://pubchem.ncbi.nlm.nih.gov" }, - "https://bioregistry.io/schema/#0000005": "DB14938", - "https://bioregistry.io/schema/#0000006": "http://www.drugbank.ca/drugs/$1", - "https://bioregistry.io/schema/#0000008": "^DB\\d{5}$", + "https://bioregistry.io/schema/#0000005": "31", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/cell/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3207-2434" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "DrugBank" - }, - { - "@value": "DRUGBANK_ID" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.drugbank.ca/drugs/", + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/cell/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.drugbank.ca/drugs/DB14938" + "@id": "https://pubchem.ncbi.nlm.nih.gov/cell/31" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bgee.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CCF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0001-8479-0262", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Henning Hermjakob" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hhe@ebi.ac.uk" + "@value": "pubchem.cell" } }, { - "@id": "https://www.obofoundry.org/ontology/psdo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD", + "@id": "https://fairsharing.org/FAIRsharing.r41qhx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE", + "@id": "https://registry.identifiers.org/registry/metatlas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/eolife", + "@id": "https://bioregistry.io/registry/iceberg.ime", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A collaborative project intended to create an encyclopedia documenting all living species known to science", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Encyclopedia of Life" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.3J6NYn" - }, + "http://purl.org/dc/terms/description": "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "http://www.wikidata.org/entity/P830" + "@id": "https://bioregistry.io/registry/iceberg" }, { - "@id": "https://www.re3data.org/repository/r3d100010229" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ICEberg integrative and mobilizable element" + }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biology" - }, - { - "@value": "ecology" - }, - { - "@value": "taxonomy" + "@value": "genomics" }, { - "@value": "biodiversity" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://eol.org" + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_IME.php?type=alpha&alpha=100" }, - "https://bioregistry.io/schema/#0000005": "1044544", - "https://bioregistry.io/schema/#0000006": "https://eol.org/pages/$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9943-2342" - }, - "https://bioregistry.io/schema/#0000024": "https://eol.org/pages/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/iceberg.ime:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://eol.org/pages/1044544" + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=1_IME" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eolife" + "@value": "iceberg.ime" } }, { - "@id": "http://aber-owl.net/ontology/HOM", + "@id": "https://registry.identifiers.org/registry/pigqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa", + "@id": "https://registry.identifiers.org/registry/ped", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/mipmod", + "@id": "https://registry.identifiers.org/registry/ordb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd", + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/uberon", + "@id": "http://www.wikidata.org/entity/P4550", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS", + "@id": "https://www.uniprot.org/database/DB-0072", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://edamontology.org/data_2652", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/atcvet", + "@id": "http://www.wikidata.org/entity/P7720", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/vmhreaction", + "@id": "https://bioregistry.io/registry/genatlas", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", + "http://purl.org/dc/terms/description": "GenAtlas is a database containing information on human genes, markers and phenotypes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VMH reaction" + "@value": "Genatlas" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION" + "@id": "https://fairsharing.org/FAIRsharing.pmg2vd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction" + "@id": "https://registry.bio2kg.org/resource/genatlas" }, { - "@id": "https://registry.identifiers.org/registry/vmhreaction" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas" + }, + { + "@id": "https://registry.identifiers.org/registry/genatlas" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS" + }, + { + "@id": "https://www.uniprot.org/database/DB-0027" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "disorder" + }, + { + "@value": "human" + }, + { + "@value": "life science" + }, + { + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vmh.life/" + "@id": "http://genatlas.medecine.univ-paris5.fr/" }, - "https://bioregistry.io/schema/#0000005": "HEX1", - "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#reaction/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", + "https://bioregistry.io/schema/#0000005": "HBB", + "https://bioregistry.io/schema/#0000006": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#reaction/", + "https://bioregistry.io/schema/#0000024": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.vmh.life/#reaction/HEX1" + "@id": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=HBB" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vmhreaction" + "@value": "genatlas" } }, { - "@id": "https://registry.identifiers.org/registry/biosimulations", + "@id": "https://registry.bio2kg.org/resource/mimodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/sio", + "@id": "https://bioportal.bioontology.org/ontologies/MPATH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/chembank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.", + "http://purl.org/dc/terms/description": "ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/micheldumontier/semanticscience" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Semanticscience Integrated Ontology" + "@value": "ChemBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/SIO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dpkb5f" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIO" - }, - { - "@id": "http://aber-owl.net/ontology/SIO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SIO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SIO" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK" }, { - "@id": "https://registry.identifiers.org/registry/sio" + "@id": "https://registry.bio2kg.org/resource/chembank" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" - }, - { - "@value": "subject agnostic" + "@value": "chemical" }, { - "@value": "natural science" + "@value": "metabolite" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/micheldumontier/semanticscience" - }, - "https://bioregistry.io/schema/#0000005": "000912", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://semanticscience.org/ontology/sio/v1.59/sio-release.owl" + "@id": "http://chembank.broad.harvard.edu" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4727-9435" + "https://bioregistry.io/schema/#0000005": "1000000", + "https://bioregistry.io/schema/#0000006": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=", + "https://bioregistry.io/schema/#0000024": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=000912" + "@id": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=1000000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sio" + "@value": "chembank" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease", + "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://orcid.org/0000-0003-0595-5271", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://www.wikidata.org/entity/P8697", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mpio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/JAX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/OA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cvdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0001-8886-8311", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vilma Hualla Mamani" + "@value": "Ruili Huang" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "ruili.huang@nih.gov" } }, { - "@id": "https://registry.identifiers.org/registry/adw", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/biomodels.teddy", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0003-4004-6479", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Christopher Baker" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bakerc@unb.ca" } }, { - "@id": "https://bioregistry.io/registry/emaps", + "@id": "https://bioregistry.io/registry/mf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823", + "http://purl.org/dc/terms/description": "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/jannahastings/mental-functioning-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Developmental Anatomy Ontology with Theiler Stage" + "@value": "Mental Functioning Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MF" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4gm9gt" + }, + { + "@id": "https://www.obofoundry.org/ontology/mf" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MF" + }, + { + "@id": "http://aber-owl.net/ontology/MF" + }, + { + "@id": "http://www.ontobee.org/ontology/MF" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "cognitive neuroscience" + }, + { + "@value": "obo" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.informatics.jax.org/vocab/gxd/anatomy/" + "@id": "https://github.com/jannahastings/mental-functioning-ontology" }, - "https://bioregistry.io/schema/#0000005": "3517823", - "https://bioregistry.io/schema/#0000006": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/emapa" + "https://bioregistry.io/schema/#0000005": "0000091", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MF_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mf.owl" }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0956-8634" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0002-3469-4923" }, - "https://bioregistry.io/schema/#0000024": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MF_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:3517823" + "@id": "http://purl.obolibrary.org/obo/MF_0000091" }, "https://bioregistry.io/schema/#0000029": { - "@value": "emaps" + "@value": "mf" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar", + "@id": "https://registry.identifiers.org/registry/asin", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/to", + "@id": "http://edamontology.org/data_1133", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase", + "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema", + "@id": "https://www.obofoundry.org/ontology/obcs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/depod", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/funcbase.mouse", + "@id": "https://bioregistry.io/registry/biomodels.vocabulary", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.", + "http://purl.org/dc/terms/description": "Vocabulary used in the RDF representation of SBML models.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FuncBase Mouse" + "@value": "SBML RDF Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE" + "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.mouse" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://func.mshri.on.ca/mouse/" + "@id": "http://biomodels.net/rdf/vocabulary.rdf" }, - "https://bioregistry.io/schema/#0000005": "1351341", - "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "rateRule", + "https://bioregistry.io/schema/#0000006": "http://biomodels.net/rdf/vocabulary.rdf#$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/", + "https://bioregistry.io/schema/#0000024": "http://biomodels.net/rdf/vocabulary.rdf#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/1351341" + "@id": "http://biomodels.net/rdf/vocabulary.rdf#rateRule" }, "https://bioregistry.io/schema/#0000029": { - "@value": "funcbase.mouse" + "@value": "biomodels.vocabulary" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA", + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/duo", + "@id": "https://bioregistry.io/registry/ogms", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DUO is an ontology which represent data use conditions.", + "http://purl.org/dc/terms/description": "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/DUO" + "@id": "https://github.com/OGMS/ogms" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Data Use Ontology" + "@value": "Ontology for General Medical Science" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DUO" + "@id": "http://aber-owl.net/ontology/OGMS" }, { - "@id": "https://www.obofoundry.org/ontology/duo" + "@id": "http://www.ontobee.org/ontology/OGMS" }, { - "@id": "https://fairsharing.org/FAIRsharing.5dnjs2" + "@id": "https://fairsharing.org/FAIRsharing.rvz0m9" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo" + "@id": "https://bartoc.org/en/node/216" }, { - "@id": "http://www.ontobee.org/ontology/DUO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS" }, { - "@id": "http://aber-owl.net/ontology/DUO" + "@id": "https://www.obofoundry.org/ontology/ogms" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DUO" + "@id": "https://bioportal.bioontology.org/ontologies/OGMS" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -41543,1898 +41988,1596 @@ "@value": "obo" }, { - "@value": "ontology" + "@value": "medicine" }, { - "@value": "subject agnostic" + "@value": "ontology" }, { "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EBISPOT/DUO" + "@id": "https://github.com/OGMS/ogms" }, - "https://bioregistry.io/schema/#0000005": "0000046", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DUO_$1", + "https://bioregistry.io/schema/#0000005": "0000031", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGMS_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/duo.owl" + "@id": "http://purl.obolibrary.org/obo/ogms.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://bioregistry.io/registry/labo" } ], - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9551-6370" + "@id": "https://orcid.org/0000-0003-1346-1327" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DUO_", + "https://bioregistry.io/schema/#0000023": { + "@value": "ogms/OMRE" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGMS_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DUO_0000046" + "@id": "http://purl.obolibrary.org/obo/OGMS_0000031" }, "https://bioregistry.io/schema/#0000029": { - "@value": "duo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/phosphosite.residue", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/labo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ndc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/hsapdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/cido", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/jws", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "ogms" } }, { - "@id": "https://bioregistry.io/registry/sdis", + "@id": "https://bioregistry.io/registry/biolink", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Selventa legacy disease namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/biolink/biolink-model" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Selventa Diseases" + "@value": "Biolink Model" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ad9d85" + }, + { + "@id": "http://aber-owl.net/ontology/BIOLINK" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink" + }, + { + "@id": "https://registry.identifiers.org/registry/biolink" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "selventa" + "@value": "medical informatics" }, { - "@value": "bel" + "@value": "functional genomics" }, { - "@value": "diseases" + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "translational medicine" + }, + { + "@value": "medical biotechnology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt" + "@id": "https://biolink.github.io/biolink-model/" + }, + "https://bioregistry.io/schema/#0000005": "Gene", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/biolink/vocab/$1", + "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/BIOLINK/52/biolink.owl" }, - "https://bioregistry.io/schema/#0000005": "D0001", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/sdis/$1", - "https://bioregistry.io/schema/#0000008": "^D\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/sdis/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/biolink/vocab/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/sdis/D0001" + "@id": "https://w3id.org/biolink/vocab/Gene" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sdis" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@value": "biolink" } }, { - "@id": "https://registry.identifiers.org/registry/vfb", + "@id": "https://registry.identifiers.org/registry/orcid", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2jkxp5", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/px", + "@id": "https://bioregistry.io/registry/alfred", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.", + "http://purl.org/dc/terms/description": "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProteomeXchange" + "@value": "The ALlele FREquency Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/px" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/alfred" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px" + "@value": "classification" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PX" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.proteomexchange.org/" + "@id": "http://alfred.med.yale.edu" }, - "https://bioregistry.io/schema/#0000005": "PXD000500", - "https://bioregistry.io/schema/#0000006": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1", - "https://bioregistry.io/schema/#0000008": "^(R)?PXD\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=", + "https://bioregistry.io/schema/#0000005": "LO362836C", + "https://bioregistry.io/schema/#0000006": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000500" + "@id": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=LO362836C" }, "https://bioregistry.io/schema/#0000029": { - "@value": "px" + "@value": "alfred" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/aero", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/pharmgkb.disease", + "@id": "https://bioregistry.io/registry/ncbiprotein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmGKB Disease" + "@value": "NCBI Protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE" - }, - { - "@id": "https://registry.identifiers.org/registry/pharmgkb.disease" + "@id": "https://www.re3data.org/repository/r3d100010776" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease" + "@id": "https://registry.bio2kg.org/resource/ncbi.protein" }, { - "@id": "http://edamontology.org/data_2651" + "@id": "https://registry.identifiers.org/registry/ncbiprotein" }, { - "@id": "http://www.wikidata.org/entity/P7001" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "pharmacogenomics" + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pharmgkb.org/" + "@id": "https://www.ncbi.nlm.nih.gov/protein" }, - "https://bioregistry.io/schema/#0000005": "PA447218", - "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/disease/$1", - "https://bioregistry.io/schema/#0000008": "^PA\\d+$", + "https://bioregistry.io/schema/#0000005": "CAA71118.1", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1", + "https://bioregistry.io/schema/#0000008": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/disease/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/protein/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02meqm098" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pharmgkb.org/disease/PA447218" + "@id": "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pharmgkb.disease" + "@value": "ncbiprotein" } }, { - "@id": "https://bioregistry.io/schema/#0000028", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The pattern for expanded URIs in the given resource" + "@id": "https://www.obofoundry.org/ontology/sao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/nif.grossanatomy", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/nif" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Gross Anatomy" }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://neuinfo.org/" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has URI pattern" + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4752-543X" }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_", + "https://bioregistry.io/schema/#0000029": { + "@value": "nif.grossanatomy" + } + }, + { + "@id": "https://bioregistry.io/registry/zinc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ZINC is not Commercial" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://rdfs.org/ns/void#uriRegexPattern" + "@id": "https://www.re3data.org/repository/r3d100010372" }, { - "@id": "http://www.wikidata.org/entity/P8966" + "@id": "http://www.wikidata.org/entity/P2084" }, { - "@id": "http://identifiers.org/idot/accessIdentifierPattern" + "@id": "https://registry.identifiers.org/registry/zinc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc" } - ] + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://zinc15.docking.org/" + }, + "https://bioregistry.io/schema/#0000005": "ZINC1084", + "https://bioregistry.io/schema/#0000006": "http://zinc15.docking.org/substances/$1", + "https://bioregistry.io/schema/#0000008": "^(ZINC)?\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://zinc15.docking.org/substances/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://zinc15.docking.org/substances/ZINC1084" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "zinc" + } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB", + "@id": "https://registry.bio2kg.org/resource/ndfrt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/fypo", + "@id": "https://bioregistry.io/registry/cco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A formal ontology of phenotypes observed in fission yeast.", + "http://purl.org/dc/terms/description": "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/pombase/fypo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fission Yeast Phenotype Ontology" + "@value": "Cell Cycle Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.4vr0ys" - }, - { - "@id": "http://aber-owl.net/ontology/FYPO" + "@id": "https://registry.identifiers.org/registry/cco" }, { - "@id": "http://www.ontobee.org/ontology/FYPO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco" }, { - "@id": "https://www.obofoundry.org/ontology/fypo" + "@id": "https://registry.bio2kg.org/resource/cco" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO" + "@id": "https://fairsharing.org/FAIRsharing.xhwrnr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO" + "@id": "https://bioregistry.io/metaregistry/biocontext/CCO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO" + "@id": "http://aber-owl.net/ontology/CCO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FYPO" + "@id": "https://bioportal.bioontology.org/ontologies/CCO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "functional genomics" }, { - "@value": "ontology" + "@value": "genomics" }, { - "@value": "phylogenetics" + "@value": "ontology" }, { "@value": "life science" }, { - "@value": "genetics" + "@value": "proteomics" + }, + { + "@value": "cell cycle" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/pombase/fypo" + "@id": "http://www.semantic-systems-biology.org/apo" }, - "https://bioregistry.io/schema/#0000005": "0001707", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FYPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "0000003", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fypo.owl" + "@id": "https://www.bio.ntnu.no/ontology/CCO/cco.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6330-7526" + "@id": "https://orcid.org/0000-0002-1171-9876" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FYPO_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FYPO_0001707" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:0000003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fypo" + "@value": "cco" } }, { - "@id": "https://registry.bio2kg.org/resource/echobase", + "@id": "http://aber-owl.net/ontology/PSIMOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/rnacentral", + "@id": "https://fairsharing.org/FAIRsharing.azr389", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/pr", + "@id": "https://registry.bio2kg.org/resource/hgvbase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/mesh.vocab", + "@id": "https://bioregistry.io/registry/clinicaltrials", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ClinicalTrials.gov" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials" }, { - "@id": "https://bioregistry.io/registry/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS" + }, + { + "@id": "http://www.wikidata.org/entity/P3098" + }, + { + "@id": "https://registry.bio2kg.org/resource/clinicaltrials" + }, + { + "@id": "https://registry.identifiers.org/registry/clinicaltrials" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "human" + }, + { + "@value": "disease" + }, + { + "@value": "drug" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HHS/meshrdf" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medical Subject Headings Vocabulary" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://hhs.github.io/meshrdf/" + "@id": "https://clinicaltrials.gov/" }, - "https://bioregistry.io/schema/#0000005": "term", - "https://bioregistry.io/schema/#0000006": "http://id.nlm.nih.gov/mesh/vocab#$1", + "https://bioregistry.io/schema/#0000005": "NCT00222573", + "https://bioregistry.io/schema/#0000006": "https://www.clinicaltrials.gov/study/$1", + "https://bioregistry.io/schema/#0000008": "^NCT\\d{8}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://id.nlm.nih.gov/mesh/vocab#", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ctgov" + }, + { + "@value": "clinicaltrial" + }, + { + "@value": "NCT" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.clinicaltrials.gov/study/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://id.nlm.nih.gov/mesh/vocab#term" + "@id": "https://www.clinicaltrials.gov/study/NCT00222573" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mesh.vocab" + "@value": "clinicaltrials" } }, { - "@id": "https://www.obofoundry.org/ontology/idomal", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/bibo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web.", + "@id": "https://bioregistry.io/metaregistry/go/resolve/RO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Bibliographic Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "bibliometrics" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bibliontology.com/" - }, - "https://bioregistry.io/schema/#0000005": "authorList", - "https://bioregistry.io/schema/#0000006": "http://purl.org/ontology/bibo/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N09955625048e48879dec33c0f3843916" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/ontology/bibo/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/ontology/bibo/authorList" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bibo" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "_:N09955625048e48879dec33c0f3843916", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Frédérick Giasson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "fred@fgiasson.com" + "@id": "http://www.ontobee.org/ontology/APO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.tw4q8x", + "@id": "http://aber-owl.net/ontology/HAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone", + "@id": "http://www.wikidata.org/entity/P4616", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/cath.domain", + "@id": "http://www.ontobee.org/ontology/CTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC", + "@id": "https://registry.identifiers.org/registry/cco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RXNO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EFO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/glycosciencesdb", + "@id": "https://bioregistry.io/registry/bmrb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates.", + "http://purl.org/dc/terms/description": "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Glycosciences.DB" + "@value": "Biological Magnetic Resonance Data Bank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.p06nme" + }, + { + "@id": "https://www.uniprot.org/database/DB-0256" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010191" + }, + { + "@id": "https://registry.identifiers.org/registry/bmrb" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "structural biology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.glycosciences.de/database/" + "@id": "http://www.bmrb.wisc.edu/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "15000", + "https://bioregistry.io/schema/#0000006": "http://rest.bmrb.wisc.edu/bmrb/$1/html", + "https://bioregistry.io/schema/#0000008": "^(bmr|bmse|bmst)?[0-9]{1,6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7140-9933" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "glycosciences.db" - }, - "https://bioregistry.io/schema/#0000024": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bmrb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1" + "@id": "http://rest.bmrb.wisc.edu/bmrb/15000/html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glycosciencesdb" - } - }, - { - "@id": "https://orcid.org/0000-0003-0530-4305", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Silvio Peroni" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "silvio.peroni@unibo.it" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@value": "bmrb" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.identifiers.org/registry/go", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } + "@id": "https://orcid.org/0000-0003-2715-335X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Torsten Schwede" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "torsten.schwede@unibas.ch" + }, + { + "@value": "help-swissmodel@unibas.ch" + } + ] }, { - "@id": "https://www.re3data.org/repository/r3d100010666", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.bio2kg.org/resource/mao", + "@id": "https://bioregistry.io/registry/dto", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-8160-7941", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Leen Vandepitte" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/DrugTargetOntology/DTO" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "leen.vandepitte@vliz.be" - } - }, - { - "@id": "https://orcid.org/0000-0002-2627-833X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Peer Bork" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bork@embl.de" - } - }, - { - "@id": "https://bioregistry.io/registry/huge", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Unidentified Gene-Encoded" + "@value": "Drug Target Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0049" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zx2ztd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE" - }, - { - "@id": "https://registry.bio2kg.org/resource/huge" + "@id": "http://aber-owl.net/ontology/DTO" }, { - "@id": "https://registry.identifiers.org/registry/huge" + "@id": "https://bioportal.bioontology.org/ontologies/DTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge" + "@id": "https://fairsharing.org/FAIRsharing.tke3y2" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "computational biology" - }, - { - "@value": "dna" - }, - { - "@value": "protein" + "@value": "ontology" }, { - "@value": "life science" + "@value": "biomedical science" }, { - "@value": "structure" + "@value": "drug discovery" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kazusa.or.jp/huge/" + "@id": "https://github.com/DrugTargetOntology/DTO" + }, + "https://bioregistry.io/schema/#0000005": "90000018", + "https://bioregistry.io/schema/#0000006": "http://www.drugtargetontology.org/dto/DTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/DTO/4/dto.owl" }, - "https://bioregistry.io/schema/#0000005": "KIAA0001", - "https://bioregistry.io/schema/#0000006": "https://www.kazusa.or.jp/huge/gfpage/$1", - "https://bioregistry.io/schema/#0000008": "^KIAA\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.kazusa.or.jp/huge/gfpage/", + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/pr" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nc2e3ba42f6a046898fa70b628a52ec6c" + }, + "https://bioregistry.io/schema/#0000024": "http://www.drugtargetontology.org/dto/DTO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kazusa.or.jp/huge/gfpage/KIAA0001" + "@id": "http://www.drugtargetontology.org/dto/DTO_90000018" }, "https://bioregistry.io/schema/#0000029": { - "@value": "huge" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "dto" } }, { - "@id": "http://aber-owl.net/ontology/FBCV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "_:Nc2e3ba42f6a046898fa70b628a52ec6c", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stephan Schurer" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sschurer@med.miami.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/piroplasma", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-9900-7880", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PiroplasmaDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA" - }, - { - "@id": "https://registry.identifiers.org/registry/piroplasma" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://piroplasmadb.org/" - }, - "https://bioregistry.io/schema/#0000005": "TA14985", - "https://bioregistry.io/schema/#0000006": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^TA\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TA14985" + "@value": "Yvonne Bradford" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "piroplasma" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ybradford@zfin.org" } }, { - "@id": "https://fairsharing.org/FAIRsharing.b549b8", + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/upa", + "@id": "https://bioregistry.io/registry/frapo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A manually curated resource for the representation and annotation of metabolic pathways", + "http://purl.org/dc/terms/description": "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/geneontology/unipathway" + "@id": "https://github.com/sparontologies/frapo" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unipathway" + "@value": "Funding, Research Administration and Projects Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/UPA" - }, - { - "@id": "https://www.obofoundry.org/ontology/upa" - }, - { - "@id": "https://registry.bio2kg.org/resource/unipathway" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY" - }, - { - "@id": "http://www.ontobee.org/ontology/UPA" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa" - }, - { - "@id": "http://edamontology.org/data_2645" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/UPA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/FRAPO" }, { - "@value": "pathway" + "@id": "https://fairsharing.org/FAIRsharing.0a2576" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/geneontology/unipathway" - }, - "https://bioregistry.io/schema/#0000005": "UCR00513", - "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1", - "https://bioregistry.io/schema/#0000008": "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/upa.owl" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/ro" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/frapo" }, + "https://bioregistry.io/schema/#0000005": "Grant", + "https://bioregistry.io/schema/#0000006": "http://purl.org/cerif/frapo/$1", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1216-2969" + "@id": "https://orcid.org/0000-0003-0530-4305" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "unipathway.pathway" - }, - { - "@value": "UPa" - }, - { - "@value": "unipathway" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=", + "https://bioregistry.io/schema/#0000024": "http://purl.org/cerif/frapo/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=UCR00513" + "@id": "http://purl.org/cerif/frapo/Grant" }, "https://bioregistry.io/schema/#0000029": { - "@value": "upa" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "frapo" } }, { - "@id": "http://aber-owl.net/ontology/RETO", + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/genecards.geneloc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources", + "@id": "http://edamontology.org/data_2309", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Location" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/geneloc" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genecards.weizmann.ac.il/geneloc/" - }, - "https://bioregistry.io/schema/#0000005": "17503", - "https://bioregistry.io/schema/#0000006": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=17503" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "genecards.geneloc" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD", + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-8537-9077", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tanja Bekhuis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "tanja.bekhuis@tcbinfosci.com" - } - }, - { - "@id": "https://bioregistry.io/registry/co_360", + "@id": "https://bioregistry.io/registry/massbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sugar Kelp trait ontology", + "http://purl.org/dc/terms/description": "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/MassBank" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sugar Kelp trait ontology" + "@value": "MassBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_360" + "@id": "https://fairsharing.org/FAIRsharing.dk451a" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360" + "@id": "http://www.wikidata.org/entity/P6689" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_360" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank" }, { - "@id": "https://fairsharing.org/FAIRsharing.1c1738" + "@id": "https://registry.identifiers.org/registry/massbank" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "physics" }, { - "@value": "botany" + "@value": "life science" }, { - "@value": "life science" + "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait" - }, - "https://bioregistry.io/schema/#0000005": "0000071", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_360:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait/owl" + "@id": "http://www.massbank.jp" }, + "https://bioregistry.io/schema/#0000005": "MSBNK-IPB_Halle-PB000166", + "https://bioregistry.io/schema/#0000006": "https://massbank.jp/RecordDisplay?id=$1", + "https://bioregistry.io/schema/#0000008": "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb6c39353d8c84018a7010dde85517963" + "@id": "https://orcid.org/0000-0002-9744-8914" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_360:", + "https://bioregistry.io/schema/#0000024": "https://massbank.jp/RecordDisplay?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_360:0000071" + "@id": "https://massbank.jp/RecordDisplay?id=MSBNK-IPB_Halle-PB000166" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_360" - } - }, - { - "@id": "_:Nb6c39353d8c84018a7010dde85517963", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "massbank" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM", + "@id": "https://registry.identifiers.org/registry/ncbiprotein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p77ph9", + "@id": "http://aber-owl.net/ontology/GECKO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi", + "@id": "https://www.uniprot.org/database/DB-0241", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META", + "@id": "http://aber-owl.net/ontology/ZFS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs", + "@id": "https://bioportal.bioontology.org/ontologies/IDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000026", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "An organization" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has identifier space owner" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000025" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.tx95wa", + "@id": "https://registry.identifiers.org/registry/bioportal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/dailymed", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/MEDLINEPLUS", + "@id": "https://bioportal.bioontology.org/ontologies/COVID19", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/ubio.namebank", + "@id": "https://registry.bio2kg.org/resource/imgthla", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/wormbase", + "@id": "https://bioregistry.io/registry/kegg.genes", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wormbase Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.uniprot.org/database/DB-0110" - }, - { - "@id": "https://registry.bio2kg.org/resource/wormbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb" - }, - { - "@id": "https://registry.identifiers.org/registry/wb" - }, + "http://purl.org/dc/terms/description": "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase" - }, + "@id": "https://bioregistry.io/registry/kegg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Genes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES" }, { - "@id": "https://fairsharing.org/FAIRsharing.zx1td8" + "@id": "https://registry.bio2kg.org/resource/kegg.gene" }, { - "@id": "https://www.re3data.org/repository/r3d100010424" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes" }, { - "@id": "http://edamontology.org/data_1805" + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "http://www.wikidata.org/entity/P3860" + "@id": "https://registry.identifiers.org/registry/kegg.genes" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "c elegans" - }, - { - "@value": "wormmart" - }, - { - "@value": "gene mapping" - }, - { - "@value": "gene expression" - }, - { - "@value": "orthology assignment" - }, - { - "@value": "ortholog" - }, - { - "@value": "anatomy" - }, - { - "@value": "genomics" - }, - { - "@value": "blast" - }, - { - "@value": "geneotype" - }, - { - "@value": "life science" - }, - { - "@value": "roundworm" - }, - { - "@value": "faseb list" - }, - { - "@value": "phenotype" - }, - { - "@value": "genomic sequence" - }, - { - "@value": "catalog" - }, - { - "@value": "transposon family" - }, - { - "@value": "database" - }, - { - "@value": "genome" + "@value": "dna" }, { - "@value": "gene function" + "@value": "protein" }, { "@value": "gene" - }, - { - "@value": "gene prediction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wormbase.org/" + "@id": "http://www.genome.jp/kegg/genes.html" }, - "https://bioregistry.io/schema/#0000005": "WBGene00000001", - "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/get?name=$1", - "https://bioregistry.io/schema/#0000008": "^WB[A-Z][a-z]+\\d+$", + "https://bioregistry.io/schema/#0000005": "bsu:BSU01340", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+:[\\w\\d\\.-]*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "wormbase" - }, - { - "@value": "wb" - }, - { - "@value": "WB_REF" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/get?name=", + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wormbase.org/get?name=WBGene00000001" + "@id": "http://www.kegg.jp/entry/bsu:BSU01340" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wormbase" + "@value": "kegg.genes" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EMAPA", + "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.obofoundry.org/ontology/ovae", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/zfa", + "@id": "https://registry.identifiers.org/registry/iceberg.element", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi", + "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100010861", + "@id": "https://bioregistry.io/registry/isfinder", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://orcid.org/0000-0002-5159-414X", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Edison Ong" + "@value": "Insertion sequence elements database" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "edong@umich.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder" + }, + { + "@id": "https://registry.bio2kg.org/resource/isfinder" + }, + { + "@id": "https://registry.identifiers.org/registry/isfinder" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xhpc3h" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "gene" + }, + { + "@value": "sequence" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www-is.biotoul.fr/i" + }, + "https://bioregistry.io/schema/#0000005": "ISA1083-2", + "https://bioregistry.io/schema/#0000006": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1", + "https://bioregistry.io/schema/#0000008": "^IS\\w+(\\-\\d)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=ISA1083-2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "isfinder" } }, { - "@id": "https://registry.identifiers.org/registry/ttd.drug", + "@id": "https://registry.bio2kg.org/resource/miriam.resource", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://edamontology.org/data_2667", + "@id": "https://fairsharing.org/FAIRsharing.2f3180", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/emap", + "@id": "https://fairsharing.org/FAIRsharing.mf91p5", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rapdb.locus", + "@id": "https://bioregistry.io/registry/grassbase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.", + "http://purl.org/dc/terms/description": "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RAP-DB Locus" + "@value": "GrassBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/rapdb.locus" + "@id": "http://www.wikidata.org/entity/P1832" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rapdb.dna.affrc.go.jp/" + "@id": "https://www.kew.org/data/grasses-syn/index.htm" }, - "https://bioregistry.io/schema/#0000005": "Os01g0883800", - "https://bioregistry.io/schema/#0000006": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1", - "https://bioregistry.io/schema/#0000008": "^Os\\S+g\\d{7}$", + "https://bioregistry.io/schema/#0000005": "imp10873", + "https://bioregistry.io/schema/#0000006": "https://www.kew.org/data/grasses-db/www/$1", + "https://bioregistry.io/schema/#0000008": "^(imp|gen)\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "irgsp" - }, - "https://bioregistry.io/schema/#0000024": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=", + "https://bioregistry.io/schema/#0000024": "https://www.kew.org/data/grasses-db/www/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=Os01g0883800" + "@id": "https://www.kew.org/data/grasses-db/www/imp10873" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rapdb.locus" + "@value": "grassbase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene", + "@id": "https://www.obofoundry.org/ontology/fideo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://edamontology.org/data_2610", + "@id": "https://orcid.org/0000-0002-2605-5080", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jonathan Karr" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "jonrkarr@gmail.com" + }, + { + "@value": "karr@mssm.edu" + } + ] + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/bactibase", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/gmelin", + "@id": "https://bioregistry.io/registry/idr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s.", + "http://purl.org/dc/terms/description": "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gmelins Handbuch der anorganischen Chemie" + "@value": "Image Data Resource" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_1004" + "@id": "https://www.re3data.org/repository/r3d100012435" }, { - "@id": "http://www.wikidata.org/entity/P1578" + "@id": "https://fairsharing.org/FAIRsharing.6wf1zw" + }, + { + "@id": "https://registry.identifiers.org/registry/idr" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://link.springer.com/bookseries/562" - }, - "https://bioregistry.io/schema/#0000005": "1466", - "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]{3,6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "gmelin" - } - }, - { - "@id": "https://bioregistry.io/registry/mgnify.samp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MGnify Sample" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp" + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/mgnify.samp" + "@value": "life science" + }, + { + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/metagenomics" + "@id": "https://idr.openmicroscopy.org" }, - "https://bioregistry.io/schema/#0000005": "SRS086444", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/samples/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+$", + "https://bioregistry.io/schema/#0000005": "0001", + "https://bioregistry.io/schema/#0000006": "https://idr.openmicroscopy.org/search/?query=Name:idr$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/samples/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4028-811X" + }, + "https://bioregistry.io/schema/#0000024": "https://idr.openmicroscopy.org/search/?query=Name:idr", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/metagenomics/samples/SRS086444" + "@id": "https://idr.openmicroscopy.org/search/?query=Name:idr0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mgnify.samp" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3590", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://orcid.org/0000-0001-9190-4256", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Satya S. Sahoo" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "satyasahoo@ieee.org" + "@value": "idr" } }, { - "@id": "https://www.obofoundry.org/ontology/plana", + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_1035", + "@id": "https://registry.identifiers.org/registry/idot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTENO", + "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ccds", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/bila", + "@id": "https://bioregistry.io/registry/flowrepository", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource.", + "http://purl.org/dc/terms/description": "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bilateria anatomy" + "@value": "FlowRepository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/bila" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila" + "@id": "https://registry.identifiers.org/registry/flowrepository" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BILA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository" }, { - "@id": "https://fairsharing.org/FAIRsharing.eqgjeq" + "@id": "https://www.re3data.org/repository/r3d100011280" }, { - "@id": "https://registry.bio2kg.org/resource/4dxpress" + "@id": "https://fairsharing.org/FAIRsharing.veg2d6" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "biology" }, { - "@value": "gene expression" + "@value": "life science" }, { - "@value": "anatomy" + "@value": "cell biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://4dx.embl.de/4DXpress" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/bila.owl" + "@id": "https://flowrepository.org/" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000005": "FR-FCM-ZYGW", + "https://bioregistry.io/schema/#0000006": "https://flowrepository.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^FR\\-FCM\\-\\w{4}$", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1548-3290" + "@id": "https://orcid.org/0000-0002-9765-2990" }, - "https://bioregistry.io/schema/#0000024": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=", + "https://bioregistry.io/schema/#0000024": "https://flowrepository.org/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=0000000" + "@id": "https://flowrepository.org/id/FR-FCM-ZYGW" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bila" + "@value": "flowrepository" } }, { - "@id": "https://bioregistry.io/registry/estdab", + "@id": "https://registry.bio2kg.org/resource/mgiid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ngbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biotools", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.0pUMYW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/issn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/seo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/description": "SEO is a reference ontology for modelling data about scientific events such as conferences, symposioums and workshops.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Searchable Tumour Line Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB" + "@value": "Scientific Event Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/ipd/estdab/" - }, - "https://bioregistry.io/schema/#0000005": "046", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1", - "https://bioregistry.io/schema/#0000008": "^\\d{3}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "@id": "https://w3id.org/seo" }, + "https://bioregistry.io/schema/#0000005": "Symposium", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/seo#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/seo#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-046" + "@id": "https://w3id.org/seo#Symposium" }, "https://bioregistry.io/schema/#0000029": { - "@value": "estdab" + "@value": "seo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA", + "@id": "https://registry.identifiers.org/registry/genewiki", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/TRANS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MGI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/unite", + "@id": "https://www.obofoundry.org/ontology/amphx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100013816", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/dbest", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/upheno", + "@id": "https://fairsharing.org/FAIRsharing.bf8dsb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.pmg2vd", + "@id": "https://fairsharing.org/FAIRsharing.z656ab", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/vmhgene", + "@id": "https://bioregistry.io/registry/hcao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Cell Atlas Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.humancellatlas.org" + }, + "https://bioregistry.io/schema/#0000010": { + "@id": "http://ontology.data.humancellatlas.org/ontologies/hcao/releases/2023-05-16/hcao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "hcao" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EPIO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CARO", + "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mmsinc", + "@id": "https://bioregistry.io/registry/vann", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats.", + "http://purl.org/dc/terms/description": "This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MMsINC" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/mmsinc" + "@value": "A vocabulary for annotating vocabulary descriptions" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structure" - }, - { - "@value": "small molecule" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mms.dsfarm.unipd.it/MMsINC" + "@id": "https://vocab.org/vann/" }, - "https://bioregistry.io/schema/#0000005": "MMs00000001", - "https://bioregistry.io/schema/#0000006": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1", + "https://bioregistry.io/schema/#0000005": "usageNote", + "https://bioregistry.io/schema/#0000006": "https://vocab.org/vann/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N1603a0611b164486bead2cd509e1f9d8" }, - "https://bioregistry.io/schema/#0000024": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=", + "https://bioregistry.io/schema/#0000024": "https://vocab.org/vann/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=MMs00000001" + "@id": "https://vocab.org/vann/usageNote" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mmsinc" + "@value": "vann" } }, { - "@id": "https://bioregistry.io/registry/aspgd.locus", + "@id": "_:N1603a0611b164486bead2cd509e1f9d8", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ian Davis" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nospam@iandavis.com" + } + }, + { + "@id": "https://bioregistry.io/registry/combine.specifications", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.", + "http://purl.org/dc/terms/description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Aspergillus Genome Database" + "@value": "COMBINE specifications" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/aspgd.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD" + "@id": "https://registry.identifiers.org/registry/combine.specifications" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.aspgd.org/" + "@id": "https://co.mbine.org/standards/" }, - "https://bioregistry.io/schema/#0000005": "ASPL0000349247", - "https://bioregistry.io/schema/#0000006": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000005": "sed-ml.level-1.version-1", + "https://bioregistry.io/schema/#0000006": "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\-|\\.|\\w)*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/combine.specifications:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=ASPL0000349247" + "@id": "https://github.com/combine-org/combine-specifications/blob/main/specifications/sed-ml.level-1.version-1.md" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aspgd.locus" + "@value": "combine.specifications" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6dba71", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/hssp", + "@id": "https://bioregistry.io/registry/bpdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.", + "http://purl.org/dc/terms/description": "Database of biopesticides maintained by the University of Hertfordshire ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of homology-derived secondary structure of proteins" + "@value": "Bio-Pesticides DataBase" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP" - }, - { - "@id": "https://registry.bio2kg.org/resource/hssp" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp" - }, - { - "@id": "https://registry.identifiers.org/registry/hssp" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "sequence" + "@value": "pesticides" }, { - "@value": "protein" + "@value": "biopesticides" }, { - "@value": "clustering" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://swift.cmbi.kun.nl/swift/hssp/" + "@id": "https://sitem.herts.ac.uk/aeru/bpdb/index.htm" }, - "https://bioregistry.io/schema/#0000005": "102l", - "https://bioregistry.io/schema/#0000006": "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2", - "https://bioregistry.io/schema/#0000008": "^\\w{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hssp:", - "https://bioregistry.io/schema/#0000027": { - "@id": "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hssp" - } - }, - { - "@id": "https://bioregistry.io/registry/drsc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drosophila RNAi Screening Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC" - }, - { - "@id": "https://registry.identifiers.org/registry/drsc" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://flyrnai.org/" - }, - "https://bioregistry.io/schema/#0000005": "DRSC05221", - "https://bioregistry.io/schema/#0000006": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1", - "https://bioregistry.io/schema/#0000008": "^DRSC\\d+$", + "https://bioregistry.io/schema/#0000005": "2404", + "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bpdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=DRSC05221" + "@id": "https://sitem.herts.ac.uk/aeru/bpdb/Reports/2404.htm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drsc" + "@value": "bpdb" } }, { - "@id": "https://registry.identifiers.org/registry/peptideatlas", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo", + "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/empiar", + "@id": "https://bioregistry.io/registry/nihreporter.project", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure", + "http://purl.org/dc/terms/description": "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Electron Microscopy Public Image Archive" + "@value": "NIH RePORTER" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.dff3ef" - }, - { - "@id": "https://registry.identifiers.org/registry/empiar" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biology" - }, - { - "@value": "bioinformatics" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/pdbe/emdb" + "@id": "https://reporter.nih.gov/" }, - "https://bioregistry.io/schema/#0000005": "10595", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1", + "https://bioregistry.io/schema/#0000005": "10343835", + "https://bioregistry.io/schema/#0000006": "https://reporter.nih.gov/project-details/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, + "https://bioregistry.io/schema/#0000024": "https://reporter.nih.gov/project-details/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10595" + "@id": "https://reporter.nih.gov/project-details/10343835" }, "https://bioregistry.io/schema/#0000029": { - "@value": "empiar" + "@value": "nihreporter.project" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PCL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND", + "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GALEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/registry/hivreagentprogram", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIH HIV Reagent Program" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hivreagentprogram.org/" - }, - "https://bioregistry.io/schema/#0000005": "ARP-1513", - "https://bioregistry.io/schema/#0000006": "https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hivreagentprogram:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.hivreagentprogram.org/Catalog/HRPCellLines/ARP-1513.aspx" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hivreagentprogram" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/unigene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/OPL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/foodon", + "@id": "https://bioregistry.io/registry/sgn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.", + "http://purl.org/dc/terms/description": "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FoodOntology/foodon" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Food Ontology" + "@value": "Sol Genomics Network" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/foodon" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon" + "@id": "https://fairsharing.org/FAIRsharing.3zqvaf" }, { - "@id": "http://www.ontobee.org/ontology/FOODON" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn" }, { - "@id": "http://aber-owl.net/ontology/FOODON" + "@id": "https://registry.bio2kg.org/resource/sgn" }, { - "@id": "https://www.obofoundry.org/ontology/foodon" + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOODON" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGN" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODON" + "@id": "https://registry.identifiers.org/registry/sgn" }, { - "@id": "https://fairsharing.org/FAIRsharing.dzxae" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON" + "@id": "https://www.re3data.org/repository/r3d100012078" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -43442,13075 +43585,6755 @@ "@value": "agriculture" }, { - "@value": "medicine" + "@value": "plant" }, { - "@value": "obo" + "@value": "genome" }, { - "@value": "ontology" + "@value": "comparative genomics" }, { "@value": "botany" }, { - "@value": "environmental science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://foodon.org/" - }, - "https://bioregistry.io/schema/#0000005": "03307879", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOODON_$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/foodon.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/eo" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/obi" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - } - ], - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/agro" - }, - { - "@id": "https://bioregistry.io/registry/maxo" - }, - { - "@id": "https://bioregistry.io/registry/ons" - }, - { - "@id": "https://bioregistry.io/registry/envo" + "@value": "small molecule" }, { - "@id": "https://bioregistry.io/registry/fobi" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/one" + "@value": "genomics" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8844-9165" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://solgenomics.net/" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOODON_", + "https://bioregistry.io/schema/#0000005": "0001", + "https://bioregistry.io/schema/#0000006": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://solgenomics.net/phenome/locus_display.pl?locus_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FOODON_03307879" + "@id": "http://solgenomics.net/phenome/locus_display.pl?locus_id=0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "foodon" + "@value": "sgn" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE", + "@id": "http://www.ontobee.org/ontology/ZFS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.1a27h8", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo", + "@id": "https://fairsharing.org/FAIRsharing.t9fvdn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0002-3684-0031", + "@id": "https://bioregistry.io/registry/kegg.dgroup", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": " KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/kegg" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Li-San Wang" + "@value": "KEGG Drug Group" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dashr@lisanwanglab.org" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.jp/kegg/reaction/" + }, + "https://bioregistry.io/schema/#0000005": "DG00301", + "https://bioregistry.io/schema/#0000008": "^DG\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "KEGG_DGROUP" + }, + { + "@value": "KEGG_DRUG_GROUP" + } + ], + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.dgroup" } }, { - "@id": "https://fairsharing.org/FAIRsharing.a4ww64", + "@id": "https://fairsharing.org/FAIRsharing.a6r7zs", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/OHPI", + "@id": "http://aber-owl.net/ontology/LIPRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/adcad", + "@id": "https://bioregistry.io/registry/psipar", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to support disciplinary annotation of Arctic Data Center datasets.", + "http://purl.org/dc/terms/description": "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/NCEAS/adc-disciplines" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Arctic Data Center Academic Disciplines Ontology" + "@value": "Protein Affinity Reagents" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ADCAD" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR" }, { - "@id": "http://aber-owl.net/ontology/ADCAD" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar" + }, + { + "@id": "https://registry.identifiers.org/registry/psipar" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://arcticdata.io/" - }, - "https://bioregistry.io/schema/#0000005": "00000", - "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/ADCAD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ADCAD/1/adcad.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://www.psidev.info/psi-par" }, - "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/ADCAD_", + "https://bioregistry.io/schema/#0000005": "0116", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://purl.dataone.org/odo/ADCAD_00000" + "@id": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:0116" }, "https://bioregistry.io/schema/#0000029": { - "@value": "adcad" + "@value": "psipar" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa", + "@id": "https://bioregistry.io/registry/clinvar.submitter", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs).", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ClinVar Submitter" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/clinvar.submitter" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/clinvar/" + }, + "https://bioregistry.io/schema/#0000005": "26957", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/clinvar/submitters/26957" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "clinvar.submitter" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/bitterdb.cpd", + "@id": "https://bioregistry.io/registry/pepbank", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PepBank Peptide Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/pepbank" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "structure" + }, + { + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pepbank.mgh.harvard.edu/" + }, + "https://bioregistry.io/schema/#0000005": "21877", + "https://bioregistry.io/schema/#0000006": "http://pepbank.mgh.harvard.edu/interactions/details/$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://pepbank.mgh.harvard.edu/interactions/details/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pepbank.mgh.harvard.edu/interactions/details/21877" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pepbank" } }, { - "@id": "https://registry.identifiers.org/registry/paxdb.organism", + "@id": "https://bioregistry.io/registry/bugbase.protocol", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BugBase Protocol" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL" + }, + { + "@id": "https://registry.identifiers.org/registry/bugbase.protocol" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bugs.sgul.ac.uk/E-BUGS" + }, + "https://bioregistry.io/schema/#0000005": "67", + "https://bioregistry.io/schema/#0000006": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=67" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bugbase.protocol" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SBO", + "@id": "http://www.ontobee.org/ontology/DIDEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/psipar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0001-9190-4256", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Satya S. Sahoo" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "satyasahoo@ieee.org" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank", + "@id": "https://registry.bio2kg.org/resource/pid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/metanetx.compartment", + "@id": "https://fairsharing.org/FAIRsharing.nbe4fq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_330", + "@id": "https://www.obofoundry.org/ontology/mi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/amoebadb", + "@id": "https://www.re3data.org/repository/r3d100010549", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MP", + "@id": "https://www.re3data.org/repository/r3d100010417", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/vectorbase", + "@id": "https://bioregistry.io/registry/pubchem.bioassay", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/pubchem" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" + "@value": "NCBI PubChem database of bioassay records" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay" }, { - "@id": "https://www.re3data.org/repository/r3d100010880" + "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase" + "@id": "https://registry.identifiers.org/registry/pubchem.bioassay" }, { - "@id": "https://registry.bio2kg.org/resource/vectorbase" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay" }, { - "@id": "https://registry.identifiers.org/registry/vectorbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY" }, { - "@id": "https://fairsharing.org/FAIRsharing.3etvdn" + "@id": "http://edamontology.org/data_2638" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay" + }, + "https://bioregistry.io/schema/#0000005": "1018", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "pubchem.assay" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase" + "@value": "pubchem.aid" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/bioassay/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/bioassay/1018" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pubchem.bioassay" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain" }, { - "@value": "population dynamics" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC" }, { - "@value": "population genetics" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC" }, { - "@value": "comparative genomics" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM" }, { - "@value": "functional genomics" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Research Resource Identifiers" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vectorbase.org/" + "@value": "https://rrid.site" }, - "https://bioregistry.io/schema/#0000005": "ISCW007415", - "https://bioregistry.io/schema/#0000006": "https://vectorbase.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^\\D{4}\\d{6}(\\-\\D{2})?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://vectorbase.org/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://vectorbase.org/gene/ISCW007415" + "https://bioregistry.io/schema/#0000005": { + "@value": "AB" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vectorbase" + "https://bioregistry.io/schema/#0000007": { + "@value": "https://scicrunch.org/resolver/RRID:$1_$2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5497-0243" } }, { - "@id": "https://bioregistry.io/registry/idr", + "@id": "https://bioregistry.io/registry/umbbd.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Image Data Resource" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/idr" - }, + "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.6wf1zw" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://www.re3data.org/repository/r3d100012435" + "@id": "https://bioregistry.io/registry/umbbd" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EAWAG Biocatalysis/Biodegradation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction" }, { - "@value": "botany" + "@id": "https://registry.identifiers.org/registry/umbbd.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://idr.openmicroscopy.org" + "@id": "http://umbbd.ethz.ch/" }, - "https://bioregistry.io/schema/#0000005": "0001", - "https://bioregistry.io/schema/#0000006": "https://idr.openmicroscopy.org/search/?query=Name:idr$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{4}$", + "https://bioregistry.io/schema/#0000005": "r0001", + "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1", + "https://bioregistry.io/schema/#0000008": "^r\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4028-811X" + "https://bioregistry.io/schema/#0000023": { + "@value": "UM-BBD_reactionID" }, - "https://bioregistry.io/schema/#0000024": "https://idr.openmicroscopy.org/search/?query=Name:idr", + "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://idr.openmicroscopy.org/search/?query=Name:idr0001" + "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=r0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "idr" + "@value": "umbbd.reaction" } }, { - "@id": "https://registry.identifiers.org/registry/sisu", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2mk2zb", + "@id": "http://agroportal.lirmm.fr/ontologies/CL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://edamontology.org/data_3265", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY", + "@id": "https://registry.bio2kg.org/resource/cazy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.46s4nt", + "@id": "https://www.obofoundry.org/ontology/peco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5hc8vt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rpcec", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)", + "@id": "http://www.wikidata.org/entity/P2576", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cuban Registry of Clinical Trials" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rpcec.sld.cu/en/home" - }, - "https://bioregistry.io/schema/#0000005": "RPCEC00000423", - "https://bioregistry.io/schema/#0000006": "https://rpcec.sld.cu/en/trials/$1", - "https://bioregistry.io/schema/#0000008": "^RPCEC\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://rpcec.sld.cu/en/trials/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://rpcec.sld.cu/en/trials/RPCEC00000423" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rpcec" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/glygen", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/proteomicsdb.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data.", + "http://purl.org/dc/terms/description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Computational and Informatics Resources for Glycoscience" + "@value": "ProteomicsDB Protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0254" + "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.aI1J5W" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "glycomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://glygen.org/glycan/" + "@id": "https://www.proteomicsdb.org/#human" }, - "https://bioregistry.io/schema/#0000005": "G24361QY", - "https://bioregistry.io/schema/#0000006": "https://glygen.org/glycan/$1", + "https://bioregistry.io/schema/#0000005": "53504", + "https://bioregistry.io/schema/#0000006": "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://glygen.org/glycan/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/proteomicsdb.protein:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://glygen.org/glycan/G24361QY" + "@id": "https://www.proteomicsdb.org/#human/proteinDetails/53504/summary" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glygen" + "@value": "proteomicsdb.protein" } }, { - "@id": "https://www.obofoundry.org/ontology/nif_cell", + "@id": "https://fairsharing.org/FAIRsharing.x39h5y", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/plasmodb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/geogeo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OM", + "@id": "https://www.re3data.org/repository/r3d100011316", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://orcid.org/0000-0001-6690-5863", + "@id": "https://registry.bio2kg.org/resource/ena", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0002-1466-062X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Haruki Nakamura" + "@value": "Adrien Coulet" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "harukin@protein.osaka-u.ac.jp" + "@value": "adrien.coulet@loria.fr" } }, { - "@id": "https://registry.identifiers.org/registry/jws", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl", + "@id": "https://fairsharing.org/FAIRsharing.wf28wm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI", + "@id": "http://aber-owl.net/ontology/MMUSDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-7440-0467", + "@id": "https://bioregistry.io/registry/ebisc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lucas Leclere" + "@value": "European Bank for induced pluripotent Stem Cells" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebisc.org" + }, + "https://bioregistry.io/schema/#0000005": "ESi007-A", + "https://bioregistry.io/schema/#0000006": "https://cells.ebisc.org/$1", + "https://bioregistry.io/schema/#0000008": "^E(S|D)i\\d+-\\w$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cells.ebisc.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cells.ebisc.org/ESi007-A" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ebisc" + } + }, + { + "@id": "https://orcid.org/0000-0002-9117-9338", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Zach Landis-Lewis" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "lucas.leclere@obs-vlfr.fr" + "@value": "zachll@umich.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox", + "@id": "https://www.obofoundry.org/ontology/flopo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular", + "@id": "https://orcid.org/0000-0001-5168-3196", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nathan Edwards" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nje5@georgetown.edu" + } + }, + { + "@id": "http://aber-owl.net/ontology/PHIPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe", + "@id": "https://cropontology.org/ontology/CO_326", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/idot", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/cdpd", + "@id": "https://bioregistry.io/registry/nihhesc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).", + "http://purl.org/dc/terms/description": "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Canadian Drug Product Database" + "@value": "NIH Human Embryonic Stem Cell Registry" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD" - }, - { - "@id": "https://registry.identifiers.org/registry/cdpd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp" + "@id": "https://grants.nih.gov/stem_cells/registry/current.htm" }, - "https://bioregistry.io/schema/#0000005": "63250", - "https://bioregistry.io/schema/#0000006": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "NIHhESC-10-0083", + "https://bioregistry.io/schema/#0000006": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=", + "https://bioregistry.io/schema/#0000024": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=63250" + "@id": "https://grants.nih.gov/stem_cells/registry/current.htm?ID=NIHhESC-10-0083" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cdpd" + "@value": "nihhesc" } }, { - "@id": "https://bioregistry.io/registry/interlex", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. ", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "InterLex" + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://fairsharing.org/FAIRsharing.67sssf" + "@id": "https://bioregistry.io/registry/ega.study" }, { - "@id": "https://registry.identifiers.org/registry/ilx" + "@id": "https://bioregistry.io/registry/otol" }, { - "@id": "http://www.wikidata.org/entity/P696" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/co_327" + }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/co_338" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/neurolex" }, { - "@value": "neurobiology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.fdilab.org" - }, - "https://bioregistry.io/schema/#0000005": "0101963", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/scicrunch/interlex/view/ilx_$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ILX" - }, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/scicrunch/interlex/view/ilx_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/scicrunch/interlex/view/ilx_0101963" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "interlex" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d95034", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-6601-2165", - "http://purl.org/dc/terms/contributor": [ + "@id": "https://bioregistry.io/registry/homologene" + }, { - "@id": "https://bioregistry.io/registry/mediadive.medium" + "@id": "https://bioregistry.io/registry/clinvar" }, { - "@id": "https://bioregistry.io/registry/insdc.run" + "@id": "https://bioregistry.io/registry/mfoem" }, { - "@id": "https://bioregistry.io/registry/glycosciencesdb" + "@id": "https://bioregistry.io/registry/openalex" }, { - "@id": "https://bioregistry.io/registry/mixs" + "@id": "https://bioregistry.io/registry/bactibase" }, { - "@id": "https://bioregistry.io/registry/emsl.project" + "@id": "https://bioregistry.io/registry/giardiadb" }, { - "@id": "https://bioregistry.io/registry/gnps.task" + "@id": "https://bioregistry.io/registry/emmo.cif" }, { - "@id": "https://bioregistry.io/registry/uniprot.arba" + "@id": "https://bioregistry.io/registry/drugbank.metabolite" }, { - "@id": "https://bioregistry.io/registry/wwf.ecoregion" + "@id": "https://bioregistry.io/registry/gramene.gene" }, { - "@id": "https://bioregistry.io/registry/jgi.proposal" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chris Mungall" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cjmungall@lbl.gov" - } - }, - { - "@id": "https://bioregistry.io/registry/hinv.transcript", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "H-InvDb Transcript" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/enzo" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT" + "@id": "https://bioregistry.io/registry/github" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript" + "@id": "https://bioregistry.io/registry/uo" }, { - "@id": "https://registry.identifiers.org/registry/hinv.transcript" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" - }, - "https://bioregistry.io/schema/#0000005": "HIT000195363", - "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1", - "https://bioregistry.io/schema/#0000008": "^HIT\\d{9}(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195363" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hinv.transcript" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/doqcs.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/combine.specifications", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COMBINE specifications" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/galen" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications" + "@id": "https://bioregistry.io/registry/aism" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS" + "@id": "https://bioregistry.io/registry/sopharm" }, { - "@id": "https://registry.identifiers.org/registry/combine.specifications" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://co.mbine.org/standards/" - }, - "https://bioregistry.io/schema/#0000005": "sed-ml.level-1.version-1", - "https://bioregistry.io/schema/#0000006": "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\-|\\.|\\w)*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/combine.specifications:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://github.com/combine-org/combine-specifications/blob/main/specifications/sed-ml.level-1.version-1.md" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "combine.specifications" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fideo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bartoc.org/en/node/549", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cryptodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ehdaa", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). Timing details will be added to the abstract version of the ontology in a future release.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human developmental anatomy, abstract version" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/pseudogene" + }, { - "@id": "https://www.obofoundry.org/ontology/ehdaa" + "@id": "https://bioregistry.io/registry/fairsharing.user" }, { - "@id": "http://aber-owl.net/ontology/EHDAA" + "@id": "https://bioregistry.io/registry/icd9cm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA" + "@id": "https://bioregistry.io/registry/slkbase" }, { - "@id": "https://registry.bio2kg.org/resource/ehdaa" + "@id": "https://bioregistry.io/registry/gsso" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/oryzabase.reference" + }, { - "@value": "development" + "@id": "https://bioregistry.io/registry/rna_sstrand" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/phosphosite.residue" }, { - "@value": "human" + "@id": "https://bioregistry.io/registry/vmhmetabolite" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/lincs.smallmolecule" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genex.hgu.mrc.ac.uk/" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDAA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/EHDAA/6/ehdaa.obo" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N50a2361590df4817930385e1bb2bde35" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDAA_", - "https://bioregistry.io/schema/#0000029": { - "@value": "ehdaa" - } - }, - { - "@id": "_:N50a2361590df4817930385e1bb2bde35", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Bard" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "J.Bard@ed.ac.uk" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011496", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/napdi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/worldavatar.compchem", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Computational Chemistry Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://como.ceb.cam.ac.uk/preprints/223/" - }, - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.theworldavatar.com/ontology/ontocompchem/ontocompchem.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "worldavatar.compchem" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/omia", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5h3maw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7fc5y6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000016", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has canonical" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" - } - }, - { - "@id": "https://registry.identifiers.org/registry/aceview.worm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ny9vnm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/QUDT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/void", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010921", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "http://aber-owl.net/ontology/OA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/rrid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Research Resource Identification" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/maizegdb.locus" + }, { - "@id": "https://fairsharing.org/FAIRsharing.ATwSZG" + "@id": "https://bioregistry.io/registry/protonet.cluster" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid" + "@id": "https://bioregistry.io/registry/nlx.org" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RRID" + "@id": "https://bioregistry.io/registry/depod" }, { - "@id": "https://registry.identifiers.org/registry/rrid" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/inchi" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/pepbank" }, { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rrid.site" - }, - "https://bioregistry.io/schema/#0000005": "AB_262044", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z]+.+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5497-0243" - }, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/resolver/RRID:AB_262044" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rrid" - } - }, - { - "@id": "https://bioregistry.io/registry/mirbase.mature", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "miRBase mature miRNA" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/gno" + }, { - "@id": "http://www.wikidata.org/entity/P2871" + "@id": "https://bioregistry.io/registry/biofactoid" }, { - "@id": "https://registry.bio2kg.org/resource/mirbase.mature" + "@id": "https://bioregistry.io/registry/uniprot.tissue" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature" + "@id": "https://bioregistry.io/registry/rexo" }, { - "@id": "https://registry.identifiers.org/registry/mirbase.mature" + "@id": "https://bioregistry.io/registry/owlstar" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ncim" + }, { - "@value": "nucleotide" + "@id": "https://bioregistry.io/registry/go.gpi" }, { - "@value": "sequence" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mirbase.org/" - }, - "https://bioregistry.io/schema/#0000005": "MIMAT0046872", - "https://bioregistry.io/schema/#0000006": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1", - "https://bioregistry.io/schema/#0000008": "^MIMAT\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MIRBASEM" - }, - "https://bioregistry.io/schema/#0000024": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0046872" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirbase.mature" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.qcceez", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/bioregistry.schema", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Schema for the export of the Bioregistry as RDF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioregistry Schema" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioregistry.io/schema" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/schema/#$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/schema/#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bioregistry.schema" - } - }, - { - "@id": "https://bioregistry.io/registry/dc_cl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dendritic cell" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/kegg.enzyme" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL" + "@id": "https://bioregistry.io/registry/beetlebase" }, { - "@id": "https://www.obofoundry.org/ontology/dc_cl" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ecoliwiki" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/thermofisher" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.dukeontologygroup.org/Projects.html" - }, - "https://bioregistry.io/schema/#0000005": "0000003", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DC_CL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1617-8244" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DC_CL_", - "https://bioregistry.io/schema/#0000029": { - "@value": "dc_cl" - } - }, - { - "@id": "http://www.wikidata.org/entity/P5299", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://orcid.org/0000-0002-4366-3088", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pier Luigi Buttigieg" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/registry/eco" + }, { - "@value": "p.buttigieg@gmail.com" + "@id": "https://bioregistry.io/registry/hc.trial" }, { - "@value": "pier.buttigieg@awi.de" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/signor.relation", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifiers for relationships between proteins and complexes, along with their type and provenance", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/cordis.project" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/rapdb.transcript" }, { - "@id": "https://bioregistry.io/registry/signor" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SIGNOR Relation" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein-protein interactions" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://signor.uniroma2.it" - }, - "https://bioregistry.io/schema/#0000005": "SIGNOR-252737", - "https://bioregistry.io/schema/#0000008": "^SIGNOR-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "signor.relation" - } - }, - { - "@id": "https://orcid.org/0000-0002-1171-9876", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Martin Kuiper" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kuiper@bio.ntnu.no" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ena", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0022", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.88v2k0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dj8nt8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ngv2xx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/scretf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.keyword", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/imgt.ligm" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/registry/ppdb" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Keywords" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/igrhcellid" + }, { - "@id": "https://registry.bio2kg.org/resource/uniprot.kw" + "@id": "https://bioregistry.io/registry/tads" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/fhir.implementation" + }, { - "@value": "classification" + "@id": "https://bioregistry.io/registry/myco.marinum" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.uniprot.org/keywords/" - }, - "https://bioregistry.io/schema/#0000005": "KW-1273", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/keywords/$1", - "https://bioregistry.io/schema/#0000008": "^KW-\\d{4}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://rest.uniprot.org/keywords/stream?compressed=true&fields=id%2Cname%2Ccategory%2Cgene_ontologies&format=tsv&query=%28%2A%29" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/registry/nsrrc" + }, { - "@value": "SP_KW" + "@id": "https://bioregistry.io/registry/co_366" }, { - "@value": "UniProtKB-KW" + "@id": "https://bioregistry.io/registry/kclb" }, { - "@value": "uniprot.keyword" + "@id": "https://bioregistry.io/registry/gmd" }, { - "@value": "uniprot.kw" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/keywords/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/keywords/KW-1273" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.keyword" - } - }, - { - "@id": "https://orcid.org/0000-0001-8528-090X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Philippe Le Mercier" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Philippe.Lemercier@sib.swiss" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HCPCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/superfamily", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/mzspec", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Universal Spectrum Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/apid.interactions" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec" + "@id": "https://bioregistry.io/registry/signor" }, { - "@id": "https://fairsharing.org/FAIRsharing.b549b8" + "@id": "https://bioregistry.io/registry/vmhreaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC" + "@id": "https://bioregistry.io/registry/hsdb" }, { - "@id": "https://registry.identifiers.org/registry/mzspec" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/biosimulators" + }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/registry/bioportal" }, { - "@value": "data governance" + "@id": "https://bioregistry.io/registry/idot" }, { - "@value": "metabolomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://proteomecentral.proteomexchange.org/" - }, - "https://bioregistry.io/schema/#0000005": "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2", - "https://bioregistry.io/schema/#0000006": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1", - "https://bioregistry.io/schema/#0000008": "^.+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mzspec" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000409", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://bioregistry.io/registry/neurondb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuronDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/swiss-model" + }, { - "@id": "http://edamontology.org/data_2656" + "@id": "https://bioregistry.io/registry/coriell" }, { - "@id": "https://fairsharing.org/FAIRsharing.45a10e" + "@id": "https://bioregistry.io/registry/peptideatlas.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb" + "@id": "https://bioregistry.io/registry/ito" }, { - "@id": "https://registry.identifiers.org/registry/neurondb" + "@id": "https://bioregistry.io/registry/sciflection" }, { - "@id": "https://registry.bio2kg.org/resource/neurondb" + "@id": "https://bioregistry.io/registry/alzforum.mutation" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bioregistry.collection" + }, { - "@value": "computational neuroscience" + "@id": "https://bioregistry.io/registry/pba" }, { - "@value": "neurobiology" + "@id": "https://bioregistry.io/registry/wos" }, { - "@value": "molecular neuroscience" + "@id": "https://bioregistry.io/registry/nlx.mol" }, { - "@value": "neurophysiology" + "@id": "https://bioregistry.io/registry/publons.researcher" }, { - "@value": "comparative neurobiology" + "@id": "https://bioregistry.io/registry/vann" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/caloha" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/rgd.strain" }, { - "@value": "cellular neuroscience" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://senselab.med.yale.edu/NeuronDB/" - }, - "https://bioregistry.io/schema/#0000005": "265", - "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=265" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "neurondb" - } - }, - { - "@id": "https://bioregistry.io/registry/co_320", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rice ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/genepio" + }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_320" + "@id": "https://bioregistry.io/registry/noaa" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320" + "@id": "https://bioregistry.io/registry/wbphenotype" }, { - "@id": "https://cropontology.org/ontology/CO_320" + "@id": "https://bioregistry.io/registry/cgsc" }, { - "@id": "https://fairsharing.org/FAIRsharing.2jkxp5" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/sitex" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/aspgd.protein" }, { - "@value": "agriculture" + "@id": "https://bioregistry.io/registry/swo" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/abcam" }, { - "@value": "botany" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_320/Rice" - }, - "https://bioregistry.io/schema/#0000005": "0000618", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_320:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_320/Rice/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6680-578X" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_320:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_320:0000618" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_320" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011196", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/dictybase.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/pharmacodb.cell" + }, { - "@id": "https://bioregistry.io/registry/dictybase" + "@id": "https://bioregistry.io/registry/insdc.cds" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dictybase Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/hc.npn" + }, { - "@id": "https://registry.identifiers.org/registry/dictybase.gene" + "@id": "https://bioregistry.io/registry/phenx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE" + "@id": "https://bioregistry.io/registry/kegg.environ" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dictybase.org/" - }, - "https://bioregistry.io/schema/#0000005": "DDB_G0267522", - "https://bioregistry.io/schema/#0000006": "http://dictybase.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^DDB_G\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://dictybase.org/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://dictybase.org/gene/DDB_G0267522" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dictybase.gene" - } - }, - { - "@id": "https://bioregistry.io/registry/co_366", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "version Dec 2019", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bambara groundnut ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/jax" + }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_366" + "@id": "https://bioregistry.io/registry/bind" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366" + "@id": "https://bioregistry.io/registry/tcdb" }, { - "@id": "https://cropontology.org/ontology/CO_366" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut" - }, - "https://bioregistry.io/schema/#0000005": "0000072", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_366:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_366/Bambara%20groundnut/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N93983d18fcdf409b8daffd2813858a1c" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_366:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_366:0000072" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_366" - } - }, - { - "@id": "_:N93983d18fcdf409b8daffd2813858a1c", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://bioregistry.io/registry/one", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to standardize research output of nutritional epidemiologic studies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Nutritional Epidemiology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/goeco" + }, { - "@id": "https://www.obofoundry.org/ontology/one" + "@id": "https://bioregistry.io/registry/sabiork.compound" }, { - "@id": "http://www.ontobee.org/ontology/ONE" + "@id": "https://bioregistry.io/registry/hinv.locus" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONE" + "@id": "https://bioregistry.io/registry/yetfasco" }, { - "@id": "http://aber-owl.net/ontology/ONE" + "@id": "https://bioregistry.io/registry/cdt" }, { - "@id": "https://fairsharing.org/FAIRsharing.USxx0K" + "@id": "https://bioregistry.io/registry/nlfff" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/one" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/dsmz" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/cog.pathway" }, { - "@value": "metabolomics" + "@id": "https://bioregistry.io/registry/tol" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/mint" }, { - "@value": "epidemiology" + "@id": "https://bioregistry.io/registry/ontie" }, { - "@value": "nutritional science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/cyang0128/Nutritional-epidemiologic-ontologies" - }, - "https://bioregistry.io/schema/#0000005": "0001021", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/one.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/goldbook" + }, { - "@id": "https://bioregistry.io/registry/ons" + "@id": "https://bioregistry.io/registry/qudt" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://bioregistry.io/registry/ecyano.rule" }, { - "@id": "https://bioregistry.io/registry/obi" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9202-5309" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONE_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ONE_0001021" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "one" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vppyga", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/sisu", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sequencing Initiative Suomi" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/brenda.ligand" + }, { - "@id": "https://registry.identifiers.org/registry/sisu" + "@id": "https://bioregistry.io/registry/paxdb.protein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu" + "@id": "https://bioregistry.io/registry/abs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SISU" + "@id": "https://bioregistry.io/registry/cro" }, { - "@id": "https://fairsharing.org/FAIRsharing.t1a232" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ncats.drug" + }, { - "@value": "medicine" + "@id": "https://bioregistry.io/registry/orth" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/registry/envo" }, { - "@value": "epidemiology" + "@id": "https://bioregistry.io/registry/cell_model_passport" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/registry/so" }, { - "@value": "biomedical science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sisuproject.fi/" - }, - "https://bioregistry.io/schema/#0000005": "17:41223048", - "https://bioregistry.io/schema/#0000006": "http://search.sisuproject.fi/#/variant/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+:[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3212-7826" - }, - "https://bioregistry.io/schema/#0000024": "http://search.sisuproject.fi/#/variant/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://search.sisuproject.fi/#/variant/17:41223048" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sisu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/wormpep", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ligandexpo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ligand Expo" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/unirule" + }, { - "@id": "https://fairsharing.org/FAIRsharing.2ma4gq" + "@id": "https://bioregistry.io/registry/cob" }, { - "@id": "https://registry.bio2kg.org/resource/ligandexpo" + "@id": "https://bioregistry.io/registry/sphn" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo" + "@id": "https://bioregistry.io/registry/credit" }, { - "@id": "https://registry.identifiers.org/registry/ligandexpo" + "@id": "https://bioregistry.io/registry/supfam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/pdc.study" + }, { - "@value": "nucleic acid" + "@id": "https://bioregistry.io/registry/imgt.hla" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/co_326" }, { - "@value": "chemical" + "@id": "https://bioregistry.io/registry/aceview.worm" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/ncbi.resource" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/registry/eo" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ligand-depot.rutgers.edu/index.html" - }, - "https://bioregistry.io/schema/#0000005": "ABC", - "https://bioregistry.io/schema/#0000006": "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid", - "https://bioregistry.io/schema/#0000008": "^(\\w){3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6686-5475" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ligandexpo:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=ABC&operation=ccid" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ligandexpo" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0181", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for computer aided process engineering" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "nfdi4chem.ontocape" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CLAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/npass", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data.\n", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Natural Product Activity and Species Source Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bidd.group/NPASS/" - }, - "https://bioregistry.io/schema/#0000005": "NPC139585", - "https://bioregistry.io/schema/#0000008": "^NPC\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "npass" - } - }, - { - "@id": "https://registry.identifiers.org/registry/apid.interactions", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/affy.probeset", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P9405", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/protonet.cluster", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/otl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/zp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/zebrafish-phenotype-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zebrafish Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/namerxn" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZP" + "@id": "https://bioregistry.io/registry/cst" }, { - "@id": "http://aber-owl.net/ontology/ZP" + "@id": "https://bioregistry.io/registry/ato" }, { - "@id": "https://www.obofoundry.org/ontology/zp" + "@id": "https://bioregistry.io/registry/idpo" }, { - "@id": "http://www.ontobee.org/ontology/ZP" + "@id": "https://bioregistry.io/registry/treebase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp" + "@id": "https://bioregistry.io/registry/sider.effect" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ZP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bridgedb" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/bigg.reaction" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/zebrafish-phenotype-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0019030", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/zp.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/prefixcommons" + }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/disdriv" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/registry/oryzabase.strain" }, { - "@id": "https://bioregistry.io/registry/bspo" + "@id": "https://bioregistry.io/registry/sty" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://bioregistry.io/registry/abm" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/dbo" }, { - "@id": "https://bioregistry.io/registry/zfa" + "@id": "https://bioregistry.io/registry/doqcs.model" }, { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9900-7880" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ZP_0019030" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "zp" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012902", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0190", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8691", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/bdgp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/neurovault.image", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroVault Image" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/pscdb" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE" + "@id": "https://bioregistry.io/registry/lipidbank" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image" + "@id": "https://bioregistry.io/registry/nucc.characteristic" }, { - "@id": "https://registry.identifiers.org/registry/neurovault.image" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neurovault.org" - }, - "https://bioregistry.io/schema/#0000005": "58788", - "https://bioregistry.io/schema/#0000006": "https://neurovault.org/images/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://neurovault.org/images/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://neurovault.org/images/58788" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "neurovault.image" - } - }, - { - "@id": "https://orcid.org/0000-0001-5886-7860", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": " Hendrik Borgelt" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hendrik.borgelt@tu-dortmund.de" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.phk7dd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/subtiwiki", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/chebi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biosimulators", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MCCL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://edamontology.org/data_1173", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/hms.lincs.dataset", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HMS Library of Integrated Network-based Cellular Signatures Datasets" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lincs.hms.harvard.edu/db/datasets/" - }, - "https://bioregistry.io/schema/#0000005": "20003", - "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/datasets/$1", - "https://bioregistry.io/schema/#0000008": "^2\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/datasets/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://lincs.hms.harvard.edu/db/datasets/20003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hms.lincs.dataset" - } - }, - { - "@id": "https://bioregistry.io/registry/oryzabase.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryzabase Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/ygob" + }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.gene" + "@id": "https://bioregistry.io/registry/geogeo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE" + "@id": "https://bioregistry.io/registry/novus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" - }, - "https://bioregistry.io/schema/#0000005": "117", - "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/117" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oryzabase.gene" - } - }, - { - "@id": "http://aber-owl.net/ontology/MFOEM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0003-3604-3785", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dongsheng Cao" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "oriental-cds@163.com" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pubmed", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HTN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/tsc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tetrahymena Stock Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/fossilworks.journal" + }, { - "@value": "tetrahymena thermophila" + "@id": "https://bioregistry.io/registry/glygen" }, { - "@value": "biology" + "@id": "https://bioregistry.io/registry/hms.lincs.compound" }, { - "@value": "culture" + "@id": "https://bioregistry.io/registry/chembl.compound" }, { - "@value": "genetics" + "@id": "https://bioregistry.io/registry/scomp" }, { - "@value": "research" + "@id": "https://bioregistry.io/registry/aspgd.locus" }, { - "@value": "eukaryota" + "@id": "https://bioregistry.io/registry/proco" }, { - "@value": "cellular" + "@id": "https://bioregistry.io/registry/obo" }, { - "@value": "molecular" + "@id": "https://bioregistry.io/registry/smiles" }, { - "@value": "repository" + "@id": "https://bioregistry.io/registry/chemspider" }, { - "@value": "model" + "@id": "https://bioregistry.io/registry/nbo" }, { - "@value": "protozoan" + "@id": "https://bioregistry.io/registry/roleo" }, { - "@value": "cell" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://tetrahymena.vet.cornell.edu/" - }, - "https://bioregistry.io/schema/#0000005": "SD00043", - "https://bioregistry.io/schema/#0000006": "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1", - "https://bioregistry.io/schema/#0000008": "^SD\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://tetrahymena.vet.cornell.edu/display.php?stockid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://tetrahymena.vet.cornell.edu/display.php?stockid=SD00043" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tsc" - } - }, - { - "@id": "https://bioregistry.io/registry/pd_st", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Platynereis stage ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/aop.relationships" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST" + "@id": "https://bioregistry.io/registry/icd11" }, { - "@id": "https://www.obofoundry.org/ontology/pd_st" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/protclustdb" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/pride" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://4dx.embl.de/platy" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PD_ST_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1548-3290" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PD_ST_", - "https://bioregistry.io/schema/#0000029": { - "@value": "pd_st" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/plo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/door", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/dcterms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/INO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/minid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimal Viable Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/exac.gene" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINID" + "@id": "https://bioregistry.io/registry/sasbdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid" + "@id": "https://bioregistry.io/registry/dbvar.variant" }, { - "@id": "https://registry.identifiers.org/registry/minid" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fair-research.org" - }, - "https://bioregistry.io/schema/#0000005": "b97957", - "https://bioregistry.io/schema/#0000006": "https://hdl.handle.net/hdl:20.500.12582/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://hdl.handle.net/hdl:20.500.12582/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://hdl.handle.net/hdl:20.500.12582/b97957" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "minid" - } - }, - { - "@id": "https://bioregistry.io/registry/eropmoscow", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/eropmoscow" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://erop.inbi.ras.ru" - }, - "https://bioregistry.io/schema/#0000005": "E00002", - "https://bioregistry.io/schema/#0000006": "http://erop.inbi.ras.ru/result2.php?PepName=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://erop.inbi.ras.ru/result2.php?PepName=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://erop.inbi.ras.ru/result2.php?PepName=E00002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "eropmoscow" - } - }, - { - "@id": "https://registry.identifiers.org/registry/civic.vid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011222", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/icd10cm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 10th Revision, Clinical Modification" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/drugcentral" + }, { - "@id": "http://www.wikidata.org/entity/P4229" + "@id": "https://bioregistry.io/registry/mirnao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM" + "@id": "https://bioregistry.io/registry/iuphar.receptor" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://fairsharing.org/FAIRsharing.hpvbxb" + "@id": "https://bioregistry.io/registry/umbbd.compound" }, { - "@id": "http://aber-owl.net/ontology/ICD10CM" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bacmap.map" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/pride.project" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/co_360" }, { - "@value": "health science" + "@id": "https://bioregistry.io/registry/fovt" }, { - "@value": "medicine" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.icd10data.com/ICD10CM" - }, - "https://bioregistry.io/schema/#0000005": "F45.21", - "https://bioregistry.io/schema/#0000006": "https://icd.codes/icd10cm/$1", - "https://bioregistry.io/schema/#0000008": "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N3f1cf0da58784e5eb360502160781559" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ICD10CM" - }, - "https://bioregistry.io/schema/#0000024": "https://icd.codes/icd10cm/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://icd.codes/icd10cm/F45.21" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "icd10cm" - } - }, - { - "@id": "_:N3f1cf0da58784e5eb360502160781559", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Patricia Brooks" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pbrooks@hcfa.gov" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mpid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2062", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c7f365", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/slm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SwissLipid" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/subtiwiki" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm" + "@id": "https://bioregistry.io/registry/vac" }, { - "@id": "https://registry.identifiers.org/registry/slm" + "@id": "https://bioregistry.io/registry/neuromorpho" }, { - "@id": "https://www.uniprot.org/database/DB-0197" + "@id": "https://bioregistry.io/registry/kegg.brite" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid" + "@id": "https://bioregistry.io/registry/comptox" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID" + "@id": "https://bioregistry.io/registry/plasmodb" }, { - "@id": "http://www.wikidata.org/entity/P8691" + "@id": "https://bioregistry.io/registry/bs" }, { - "@id": "https://www.re3data.org/repository/r3d100012603" + "@id": "https://bioregistry.io/registry/drsc" }, { - "@id": "https://fairsharing.org/FAIRsharing.pxr7x2" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/cto" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/gxa.gene" }, { - "@value": "metabolomics" + "@id": "https://bioregistry.io/registry/bacmap.biog" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.swisslipids.org/#/" - }, - "https://bioregistry.io/schema/#0000005": "000000341", - "https://bioregistry.io/schema/#0000006": "https://www.swisslipids.org/#/entity/SLM:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/swisslipids.ttl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2148-9135" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/registry/cosmic.cell" + }, { - "@value": "swisslipid" + "@id": "https://bioregistry.io/registry/nextdb" }, { - "@value": "swisslipids" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.swisslipids.org/#/entity/SLM:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.swisslipids.org/#/entity/SLM:000000341" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "slm" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/oridb.schizo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OriDB Schizosaccharomyces" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO" + "@id": "https://bioregistry.io/registry/genpept" }, { - "@id": "https://registry.identifiers.org/registry/oridb.schizo" + "@id": "https://bioregistry.io/registry/psdo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pombe.oridb.org/index.php" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://pombe.oridb.org/details.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pombe.oridb.org/details.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pombe.oridb.org/details.php?id=1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oridb.schizo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/neurondb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_1179", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "BioContext contains modular JSON-LD contexts for bioinformatics data." - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON" + "@id": "https://bioregistry.io/registry/genetree" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG" + "@id": "https://bioregistry.io/registry/estdab" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO" + "@id": "https://bioregistry.io/registry/agsd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS" + "@id": "https://bioregistry.io/registry/mdm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV" + "@id": "https://bioregistry.io/registry/senso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENO" + "@id": "https://bioregistry.io/registry/epio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES" + "@id": "https://bioregistry.io/registry/apollosv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAO" + "@id": "https://bioregistry.io/registry/lncipedia" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET" + "@id": "https://bioregistry.io/registry/hssp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB" + "@id": "https://bioregistry.io/registry/pubchem.substance" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA" + "@id": "https://bioregistry.io/registry/conoserver" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE" + "@id": "https://bioregistry.io/registry/virmirdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND" + "@id": "https://bioregistry.io/registry/seed.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB" + "@id": "https://bioregistry.io/registry/datf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT" + "@id": "https://bioregistry.io/registry/interlex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM" + "@id": "https://bioregistry.io/registry/chmo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB" + "@id": "https://bioregistry.io/registry/scop.sid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SBO" + "@id": "https://bioregistry.io/registry/spike.map" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" + "@id": "https://bioregistry.io/registry/genecards" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOM" + "@id": "https://bioregistry.io/registry/kegg.module" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM" + "@id": "https://bioregistry.io/registry/ctis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS" + "@id": "https://bioregistry.io/registry/diseasesdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB" + "@id": "https://bioregistry.io/registry/emsl.project" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD" + "@id": "https://bioregistry.io/registry/insdc.run" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE" + "@id": "https://bioregistry.io/registry/bgee.family" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI" + "@id": "https://bioregistry.io/registry/cellrepo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP" + "@id": "https://bioregistry.io/registry/dg.4503" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA" + "@id": "https://bioregistry.io/registry/pennsieve" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB" + "@id": "https://bioregistry.io/registry/debio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN" + "@id": "https://bioregistry.io/registry/xsd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS" + "@id": "https://bioregistry.io/registry/txpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase" + "@id": "https://bioregistry.io/registry/ncbi.assembly" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT" + "@id": "https://bioregistry.io/registry/pharmacodb.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STAP" + "@id": "https://bioregistry.io/registry/civic.gid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB" + "@id": "https://bioregistry.io/registry/biogrid.interaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO" + "@id": "https://bioregistry.io/registry/chickenqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY" + "@id": "https://bioregistry.io/registry/eropmoscow" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NDC" + "@id": "https://bioregistry.io/registry/tritrypdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS" + "@id": "https://bioregistry.io/registry/easychair.topic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION" + "@id": "https://bioregistry.io/registry/hom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE" + "@id": "https://bioregistry.io/registry/isbn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PPO" + "@id": "https://bioregistry.io/registry/vgnc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICO" + "@id": "https://bioregistry.io/registry/swh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPL" + "@id": "https://bioregistry.io/registry/gro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD" + "@id": "https://bioregistry.io/registry/tair.locus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY" + "@id": "https://bioregistry.io/registry/oci" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN" + "@id": "https://bioregistry.io/registry/phosphosite.sitegroup" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA" + "@id": "https://bioregistry.io/registry/gmd.gcms" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB" + "@id": "https://bioregistry.io/registry/dpv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM" + "@id": "https://bioregistry.io/registry/t4fs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE" + "@id": "https://bioregistry.io/registry/transyt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF" + "@id": "https://bioregistry.io/registry/fsnp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO" + "@id": "https://bioregistry.io/registry/jcm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CIO" + "@id": "https://bioregistry.io/registry/ega.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT" + "@id": "https://bioregistry.io/registry/pdbsum" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TO" + "@id": "https://bioregistry.io/registry/rgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXO" + "@id": "https://bioregistry.io/registry/iao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS" + "@id": "https://bioregistry.io/registry/frapo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND" + "@id": "https://bioregistry.io/registry/fix" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFO" + "@id": "https://bioregistry.io/registry/bdgp.est" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi" + "@id": "https://bioregistry.io/registry/stato" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY" + "@id": "https://bioregistry.io/registry/lpt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY" + "@id": "https://bioregistry.io/registry/isfinder" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD" + "@id": "https://bioregistry.io/registry/ngl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI" + "@id": "https://bioregistry.io/registry/rdfs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMP" + "@id": "https://bioregistry.io/registry/mediadive.solution" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY" + "@id": "https://bioregistry.io/registry/virushostdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB" + "@id": "https://bioregistry.io/registry/tao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE" + "@id": "https://bioregistry.io/registry/qb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR" + "@id": "https://bioregistry.io/registry/panther.node" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND" + "@id": "https://bioregistry.io/registry/sharkipedia.trend" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBN" + "@id": "https://bioregistry.io/registry/pathguide" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS" + "@id": "https://bioregistry.io/registry/scopus.work" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD" + "@id": "https://bioregistry.io/registry/hoelzel" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase" + "@id": "https://bioregistry.io/registry/gaz" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST" + "@id": "https://bioregistry.io/registry/stitch" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND" + "@id": "https://bioregistry.io/registry/bco" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE" + "@id": "https://bioregistry.io/registry/gitlab" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX" + "@id": "https://bioregistry.io/registry/virgen" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/xsd" + "@id": "https://bioregistry.io/registry/snomedct" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT" + "@id": "https://bioregistry.io/registry/biomodels.teddy" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMART" + "@id": "https://bioregistry.io/registry/sheepqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME" + "@id": "https://bioregistry.io/registry/viralzone" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN" + "@id": "https://bioregistry.io/registry/otl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET" + "@id": "https://bioregistry.io/registry/hcvdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP" + "@id": "https://bioregistry.io/registry/ensembl.fungi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE" + "@id": "https://bioregistry.io/registry/corrdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAO" + "@id": "https://bioregistry.io/registry/biozil" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC" + "@id": "https://bioregistry.io/registry/sisu" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR" + "@id": "https://bioregistry.io/registry/bitterdb.cpd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE" + "@id": "https://bioregistry.io/registry/dlxb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OAE" + "@id": "https://bioregistry.io/registry/sabiork.ec" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET" + "@id": "https://bioregistry.io/registry/pathbank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED" + "@id": "https://bioregistry.io/registry/ino" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN" + "@id": "https://bioregistry.io/registry/te" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GDC" + "@id": "https://bioregistry.io/registry/virsirna" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD" + "@id": "https://bioregistry.io/registry/dsm5" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL" + "@id": "https://bioregistry.io/registry/hoso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO" + "@id": "https://bioregistry.io/registry/spd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD" + "@id": "https://bioregistry.io/registry/disprot" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO" + "@id": "https://bioregistry.io/registry/tccd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM" + "@id": "https://bioregistry.io/registry/ctri" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA" + "@id": "https://bioregistry.io/registry/ensembl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/prov" + "@id": "https://bioregistry.io/registry/cmf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARK" + "@id": "https://bioregistry.io/registry/tokue" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STATO" + "@id": "https://bioregistry.io/registry/dolce" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM" + "@id": "https://bioregistry.io/registry/qtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA" + "@id": "https://bioregistry.io/registry/arachnoserver" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC" + "@id": "https://bioregistry.io/registry/imex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINT" + "@id": "https://bioregistry.io/registry/storedb.file" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV" + "@id": "https://bioregistry.io/registry/mampol" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS" + "@id": "https://bioregistry.io/registry/rnao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT" + "@id": "https://bioregistry.io/registry/dbvar.study" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN" + "@id": "https://bioregistry.io/registry/proteomicsdb.peptide" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MRO" + "@id": "https://bioregistry.io/registry/addexbio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA" + "@id": "https://bioregistry.io/registry/gpcrnava" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY" + "@id": "https://bioregistry.io/registry/co_343" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/foaf" + "@id": "https://bioregistry.io/registry/bbtp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase" + "@id": "https://bioregistry.io/registry/dip" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS" + "@id": "https://bioregistry.io/registry/mmp.db" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop" + "@id": "https://bioregistry.io/registry/msio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB" + "@id": "https://bioregistry.io/registry/chembl.cell" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO" + "@id": "https://bioregistry.io/registry/cvx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CL" + "@id": "https://bioregistry.io/registry/broad" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID" + "@id": "https://bioregistry.io/registry/ghr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO" + "@id": "https://bioregistry.io/registry/icd10cm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID" + "@id": "https://bioregistry.io/registry/obi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NGL" + "@id": "https://bioregistry.io/registry/wwf.ecoregion" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY" + "@id": "https://bioregistry.io/registry/cheminf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM" + "@id": "https://bioregistry.io/registry/imanis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO" + "@id": "https://bioregistry.io/registry/metatlas.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATO" + "@id": "https://bioregistry.io/registry/geonames.feature" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB" + "@id": "https://bioregistry.io/registry/cpt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO" + "@id": "https://bioregistry.io/registry/bko" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA" + "@id": "https://bioregistry.io/registry/fideo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ" + "@id": "https://bioregistry.io/registry/funderregistry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE" + "@id": "https://bioregistry.io/registry/bcio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT" + "@id": "https://bioregistry.io/registry/brenda.ligandgroup" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS" + "@id": "https://bioregistry.io/registry/myco.smeg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG" + "@id": "https://bioregistry.io/registry/gsfa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS" + "@id": "https://bioregistry.io/registry/pactr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR" + "@id": "https://bioregistry.io/registry/swrl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH" + "@id": "https://bioregistry.io/registry/sstoss" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST" + "@id": "https://bioregistry.io/registry/cadsr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX" + "@id": "https://bioregistry.io/registry/ricenetdb.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BAO" + "@id": "https://bioregistry.io/registry/tgn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF" + "@id": "https://bioregistry.io/registry/metacyc.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG" + "@id": "https://bioregistry.io/registry/fobi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI" + "@id": "https://bioregistry.io/registry/clinvar.record" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS" + "@id": "https://bioregistry.io/registry/iceberg.element" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN" + "@id": "https://bioregistry.io/registry/nlx.br" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED" + "@id": "https://bioregistry.io/registry/fbbt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY" + "@id": "https://bioregistry.io/registry/edam.topic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB" + "@id": "https://bioregistry.io/registry/rpcec" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD" + "@id": "https://bioregistry.io/registry/oryzabase.stage" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP" + "@id": "https://bioregistry.io/registry/gard" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC" + "@id": "https://bioregistry.io/registry/biomagresbank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE" + "@id": "https://bioregistry.io/registry/civic.aid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE" + "@id": "https://bioregistry.io/registry/pirsf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC" + "@id": "https://bioregistry.io/registry/go.rule" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO" + "@id": "https://bioregistry.io/registry/gmelin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB" + "@id": "https://bioregistry.io/registry/metabolights" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt" + "@id": "https://bioregistry.io/registry/unichem" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY" + "@id": "https://bioregistry.io/registry/ons" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE" + "@id": "https://bioregistry.io/registry/mtbd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA" + "@id": "https://bioregistry.io/registry/classyfire" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAT" + "@id": "https://bioregistry.io/registry/glyconavi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/idot" + "@id": "https://bioregistry.io/registry/lincs.data" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR" + "@id": "https://bioregistry.io/registry/snornabase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION" + "@id": "https://bioregistry.io/registry/drugbank.salt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER" + "@id": "https://bioregistry.io/registry/hms.lincs.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND" + "@id": "https://bioregistry.io/registry/pmr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO" + "@id": "https://bioregistry.io/registry/odc.tbi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN" + "@id": "https://bioregistry.io/registry/nlx.inv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPM" + "@id": "https://bioregistry.io/registry/lepao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB" + "@id": "https://bioregistry.io/registry/narcis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN" + "@id": "https://bioregistry.io/registry/ensembl.protist" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX" + "@id": "https://bioregistry.io/registry/ror" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLO" + "@id": "https://bioregistry.io/registry/kerafast" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA" + "@id": "https://bioregistry.io/registry/unpd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL" + "@id": "https://bioregistry.io/registry/pictar" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID" + "@id": "https://bioregistry.io/registry/iceberg.cime" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE" + "@id": "https://bioregistry.io/registry/hamap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly" + "@id": "https://bioregistry.io/registry/hl7.v3codesystem" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/skos" + "@id": "https://bioregistry.io/registry/goche" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MA" + "@id": "https://bioregistry.io/registry/intact" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS" + "@id": "https://bioregistry.io/registry/snctp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO" + "@id": "https://bioregistry.io/registry/protonet.proteincard" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATO" + "@id": "https://bioregistry.io/registry/noncodev3" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ADW" + "@id": "https://bioregistry.io/registry/viroligo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB" + "@id": "https://bioregistry.io/registry/umls" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF" + "@id": "https://bioregistry.io/registry/gdc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES" + "@id": "https://bioregistry.io/registry/maxo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS" + "@id": "https://bioregistry.io/registry/rnacentral" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE" + "@id": "https://bioregistry.io/registry/gendis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP" + "@id": "https://bioregistry.io/registry/metnetdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER" + "@id": "https://bioregistry.io/registry/ado" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF" + "@id": "https://bioregistry.io/registry/co_357" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs" + "@id": "https://bioregistry.io/registry/dragondb.dna" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY" + "@id": "https://bioregistry.io/registry/dg.f82a1a" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE" + "@id": "https://bioregistry.io/registry/ecao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV" + "@id": "https://bioregistry.io/registry/vido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA" + "@id": "https://bioregistry.io/registry/swissregulon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC" + "@id": "https://bioregistry.io/registry/vuid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS" + "@id": "https://bioregistry.io/registry/polbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB" + "@id": "https://bioregistry.io/registry/chemdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT" + "@id": "https://bioregistry.io/registry/atol" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLO" + "@id": "https://bioregistry.io/registry/alzgene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL" + "@id": "https://bioregistry.io/registry/lrg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS" + "@id": "https://bioregistry.io/registry/civic.eid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB" + "@id": "https://bioregistry.io/registry/vso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF" + "@id": "https://bioregistry.io/registry/bido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IAO" + "@id": "https://bioregistry.io/registry/worms" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN" + "@id": "https://bioregistry.io/registry/datacite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDO" + "@id": "https://bioregistry.io/registry/nbrc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT" + "@id": "https://bioregistry.io/registry/cst.ab" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE" + "@id": "https://bioregistry.io/registry/kcris" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON" + "@id": "https://bioregistry.io/registry/mediadive.ingredient" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VO" + "@id": "https://bioregistry.io/registry/bigg.metabolite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM" + "@id": "https://bioregistry.io/registry/aero" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VT" + "@id": "https://bioregistry.io/registry/jws" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP" + "@id": "https://bioregistry.io/registry/uniparc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL" + "@id": "https://bioregistry.io/registry/hgnc.genefamily" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB" + "@id": "https://bioregistry.io/registry/drugbank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/owl" + "@id": "https://bioregistry.io/registry/bgee.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO" + "@id": "https://bioregistry.io/registry/biokc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH" + "@id": "https://bioregistry.io/registry/uniprot.disease" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID" + "@id": "https://bioregistry.io/registry/civic.did" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA" + "@id": "https://bioregistry.io/registry/gcst" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEX" + "@id": "https://bioregistry.io/registry/miriam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OTL" + "@id": "https://bioregistry.io/registry/cryoem" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION" + "@id": "https://bioregistry.io/registry/violinnet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOD" + "@id": "https://bioregistry.io/registry/phylomedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION" + "@id": "https://bioregistry.io/registry/euclinicaltrials" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL" + "@id": "https://bioregistry.io/registry/msigdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST" + "@id": "https://bioregistry.io/registry/sdgio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI" + "@id": "https://bioregistry.io/registry/phytozome.locus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE" + "@id": "https://bioregistry.io/registry/ipi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RBK" + "@id": "https://bioregistry.io/registry/iro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY" + "@id": "https://bioregistry.io/registry/ietf.language" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JWS" + "@id": "https://bioregistry.io/registry/ontoavida" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet" + "@id": "https://bioregistry.io/registry/ligandbox" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE" + "@id": "https://bioregistry.io/registry/adcad" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB" + "@id": "https://bioregistry.io/registry/iuphar.family" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY" + "@id": "https://bioregistry.io/registry/pmp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP" + "@id": "https://bioregistry.io/registry/co_341" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT" + "@id": "https://bioregistry.io/registry/gexo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD" + "@id": "https://bioregistry.io/registry/clinvar.submitter" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN" + "@id": "https://bioregistry.io/registry/pseudomonas" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST" + "@id": "https://bioregistry.io/registry/csa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOID" + "@id": "https://bioregistry.io/registry/genedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL" + "@id": "https://bioregistry.io/registry/dragondb.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON" + "@id": "https://bioregistry.io/registry/ftt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB" + "@id": "https://bioregistry.io/registry/umls.aui" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI" + "@id": "https://bioregistry.io/registry/xpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL" + "@id": "https://bioregistry.io/registry/mcro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA" + "@id": "https://bioregistry.io/registry/bmrb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM" + "@id": "https://bioregistry.io/registry/planttfdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS" + "@id": "https://bioregistry.io/registry/bdgp.insertion" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON" + "@id": "https://bioregistry.io/registry/multicellds" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP" + "@id": "https://bioregistry.io/registry/mirbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL" + "@id": "https://bioregistry.io/registry/reto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA" + "@id": "https://bioregistry.io/registry/mfmo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE" + "@id": "https://bioregistry.io/registry/go.resource" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERV" + "@id": "https://bioregistry.io/registry/bcbc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13" + "@id": "https://bioregistry.io/registry/inaturalist.taxon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM" + "@id": "https://bioregistry.io/registry/dictybase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK" + "@id": "https://bioregistry.io/registry/orphanet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM" + "@id": "https://bioregistry.io/registry/cellosaurus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC" + "@id": "https://bioregistry.io/registry/igsr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC" + "@id": "https://bioregistry.io/registry/schem" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST" + "@id": "https://bioregistry.io/registry/reaxys" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARO" + "@id": "https://bioregistry.io/registry/omiabis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS" + "@id": "https://bioregistry.io/registry/complexportal" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION" + "@id": "https://bioregistry.io/registry/glycosciencesdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS" + "@id": "https://bioregistry.io/registry/ehdaa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE" + "@id": "https://bioregistry.io/registry/flybase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO" + "@id": "https://bioregistry.io/registry/world2dpage" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MF" + "@id": "https://bioregistry.io/registry/mycobank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD" + "@id": "https://bioregistry.io/registry/hcao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IEV" + "@id": "https://bioregistry.io/registry/uniprot.resource" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO" + "@id": "https://bioregistry.io/registry/iso15926" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV" + "@id": "https://bioregistry.io/registry/orcid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase" + "@id": "https://bioregistry.io/registry/fcb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT" + "@id": "https://bioregistry.io/registry/voc4cat" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT" + "@id": "https://bioregistry.io/registry/myco.tuber" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND" + "@id": "https://bioregistry.io/registry/gwascentral.marker" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO" + "@id": "https://bioregistry.io/registry/ecyano.model" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY" + "@id": "https://bioregistry.io/registry/loinc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE" + "@id": "https://bioregistry.io/registry/radlex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIR" + "@id": "https://bioregistry.io/registry/epcc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SO" + "@id": "https://bioregistry.io/registry/adw" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MP" + "@id": "https://bioregistry.io/registry/trans" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PX" + "@id": "https://bioregistry.io/registry/confident.event" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdf" + "@id": "https://bioregistry.io/registry/degradome" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MGI" + "@id": "https://bioregistry.io/registry/xlmod" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGG" + "@id": "https://bioregistry.io/registry/mmp.cat" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN" + "@id": "https://bioregistry.io/registry/civic.mpid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB" + "@id": "https://bioregistry.io/registry/gramene.growthstage" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB" + "@id": "https://bioregistry.io/registry/wormbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER" + "@id": "https://bioregistry.io/registry/co_365" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI" + "@id": "https://bioregistry.io/registry/echobase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT" + "@id": "https://bioregistry.io/registry/gc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD" + "@id": "https://bioregistry.io/registry/hovergen" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE" + "@id": "https://bioregistry.io/registry/aftol.taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HDR" + "@id": "https://bioregistry.io/registry/sgd.pathways" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP" + "@id": "https://bioregistry.io/registry/ehda" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY" + "@id": "https://bioregistry.io/registry/tair.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/faldo" + "@id": "https://bioregistry.io/registry/hesa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR" + "@id": "https://bioregistry.io/registry/lspci" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP" + "@id": "https://bioregistry.io/registry/icepo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH" + "@id": "https://bioregistry.io/registry/viperdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv" + "@id": "https://bioregistry.io/registry/uniprot.var" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H" + "@id": "https://bioregistry.io/registry/hmdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank" + "@id": "https://bioregistry.io/registry/doid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB" + "@id": "https://bioregistry.io/registry/zea" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2" + "@id": "https://bioregistry.io/registry/storedb.dataset" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC" + "@id": "https://bioregistry.io/registry/ppr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR" + "@id": "https://bioregistry.io/registry/biomodels.vocabulary" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX" + "@id": "https://bioregistry.io/registry/ecg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK" + "@id": "https://bioregistry.io/registry/bykdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA" + "@id": "https://bioregistry.io/registry/cutg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE" + "@id": "https://bioregistry.io/registry/ev" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY" + "@id": "https://bioregistry.io/registry/phenolexplorer" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO" + "@id": "https://bioregistry.io/registry/lgai.cede" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME" + "@id": "https://bioregistry.io/registry/kegg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT" + "@id": "https://bioregistry.io/registry/bugbase.protocol" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PCO" + "@id": "https://bioregistry.io/registry/fr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VTO" + "@id": "https://bioregistry.io/registry/rtecs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI" + "@id": "https://bioregistry.io/registry/dinto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE" + "@id": "https://bioregistry.io/registry/npass" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS" + "@id": "https://bioregistry.io/registry/dermo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE" + "@id": "https://bioregistry.io/registry/bioregistry.registry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT" + "@id": "https://bioregistry.io/registry/nddf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO" + "@id": "https://bioregistry.io/registry/kegg.orthology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE" + "@id": "https://bioregistry.io/registry/biocatalogue.service" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/pav" + "@id": "https://bioregistry.io/registry/ac" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM" + "@id": "https://bioregistry.io/registry/cghdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL" + "@id": "https://bioregistry.io/registry/idog" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CSA" + "@id": "https://bioregistry.io/registry/seo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell" + "@id": "https://bioregistry.io/registry/vsdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOP" + "@id": "https://bioregistry.io/registry/phrr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY" + "@id": "https://bioregistry.io/registry/nxr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO" + "@id": "https://bioregistry.io/registry/dailymed" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NMR" + "@id": "https://bioregistry.io/registry/cohd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER" + "@id": "https://bioregistry.io/registry/oma.hog" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE" + "@id": "https://bioregistry.io/registry/ctcae" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE" + "@id": "https://bioregistry.io/registry/nlx.chem" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO" + "@id": "https://bioregistry.io/registry/wikidata.property" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3" + "@id": "https://bioregistry.io/registry/microscope" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS" + "@id": "https://bioregistry.io/registry/ped.ensemble" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv" + "@id": "https://bioregistry.io/registry/birnlex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX" + "@id": "https://bioregistry.io/registry/fabio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRID" + "@id": "https://bioregistry.io/registry/kegg.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD" + "@id": "https://bioregistry.io/registry/vario" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB" + "@id": "https://bioregistry.io/registry/sio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB" + "@id": "https://bioregistry.io/registry/gramene.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO" + "@id": "https://bioregistry.io/registry/flowrepository" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE" + "@id": "https://bioregistry.io/registry/wikidata" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN" + "@id": "https://bioregistry.io/registry/rism" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY" + "@id": "https://bioregistry.io/registry/sider.drug" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE" + "@id": "https://bioregistry.io/registry/opl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE" + "@id": "https://bioregistry.io/registry/eurofir" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK" + "@id": "https://bioregistry.io/registry/pav" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB" + "@id": "https://bioregistry.io/registry/gold" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS" + "@id": "https://bioregistry.io/registry/iuphar.ligand" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE" + "@id": "https://bioregistry.io/registry/tcb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO" + "@id": "https://bioregistry.io/registry/genecards.geneloc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES" + "@id": "https://bioregistry.io/registry/rxno" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB" + "@id": "https://bioregistry.io/registry/matrixdb.association" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA" + "@id": "https://bioregistry.io/registry/rnamod" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY" + "@id": "https://bioregistry.io/registry/macie" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY" + "@id": "https://bioregistry.io/registry/biosample" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT" + "@id": "https://bioregistry.io/registry/eugenes" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOL" + "@id": "https://bioregistry.io/registry/refseq" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO" + "@id": "https://bioregistry.io/registry/zenodo.record" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION" + "@id": "https://bioregistry.io/registry/oa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV" + "@id": "https://bioregistry.io/registry/hagr.gendr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT" + "@id": "https://bioregistry.io/registry/wbls" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GABI" + "@id": "https://bioregistry.io/registry/omop" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN" + "@id": "https://bioregistry.io/registry/cattleqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND" + "@id": "https://bioregistry.io/registry/rdo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBI" + "@id": "https://bioregistry.io/registry/ncbigene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB" + "@id": "https://bioregistry.io/registry/depmap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB" + "@id": "https://bioregistry.io/registry/nlx.sub" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DPV" + "@id": "https://bioregistry.io/registry/pesticideinfo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS" + "@id": "https://bioregistry.io/registry/babelon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME" + "@id": "https://bioregistry.io/registry/eu89h" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE" + "@id": "https://bioregistry.io/registry/vega" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY" + "@id": "https://bioregistry.io/registry/co_347" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY" + "@id": "https://bioregistry.io/registry/dpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS" + "@id": "https://bioregistry.io/registry/iobc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FMA" + "@id": "https://bioregistry.io/registry/peroxibase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICD" + "@id": "https://bioregistry.io/registry/cdd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE" + "@id": "https://bioregistry.io/registry/omim" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS" + "@id": "https://bioregistry.io/registry/sabiork.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN" + "@id": "https://bioregistry.io/registry/pathwaycommons" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPR" + "@id": "https://bioregistry.io/registry/emap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS" + "@id": "https://bioregistry.io/registry/fypo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH" + "@id": "https://bioregistry.io/registry/mpid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO" + "@id": "https://bioregistry.io/registry/scretf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM" + "@id": "https://bioregistry.io/registry/th" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION" + "@id": "https://bioregistry.io/registry/mro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM" + "@id": "https://bioregistry.io/registry/hathitrust" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE" + "@id": "https://bioregistry.io/registry/snp500cancer" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA" + "@id": "https://bioregistry.io/registry/drsanv0" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY" + "@id": "https://bioregistry.io/registry/taxrank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LPT" + "@id": "https://bioregistry.io/registry/d1id" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGI" + "@id": "https://bioregistry.io/registry/unipathway.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPB" + "@id": "https://bioregistry.io/registry/dev.ga4ghdos" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST" + "@id": "https://bioregistry.io/registry/omia" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YPO" + "@id": "https://bioregistry.io/registry/unite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS" + "@id": "https://bioregistry.io/registry/oae" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE" + "@id": "https://bioregistry.io/registry/kegg.pathway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI" + "@id": "https://bioregistry.io/registry/cellosaurus.resource" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME" + "@id": "https://bioregistry.io/registry/dcat" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB" + "@id": "https://bioregistry.io/registry/npo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB" + "@id": "https://bioregistry.io/registry/bpdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS" + "@id": "https://bioregistry.io/registry/inaturalist.observation" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWH" + "@id": "https://bioregistry.io/registry/clinicaltrials" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome" + "@id": "https://bioregistry.io/registry/crisprdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG" + "@id": "https://bioregistry.io/registry/drugbank.category" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CPC" + "@id": "https://bioregistry.io/registry/rapdb.locus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGD" + "@id": "https://bioregistry.io/registry/mop" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL" + "@id": "https://bioregistry.io/registry/dideo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR" + "@id": "https://bioregistry.io/registry/tkg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPD" + "@id": "https://bioregistry.io/registry/oridb.sacch" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS" + "@id": "https://bioregistry.io/registry/puro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY" + "@id": "https://bioregistry.io/registry/diseaseclass" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SAO" + "@id": "https://bioregistry.io/registry/co_335" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE" + "@id": "https://bioregistry.io/registry/po" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA" + "@id": "https://bioregistry.io/registry/ordb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE" + "@id": "https://bioregistry.io/registry/splash" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE" + "@id": "https://bioregistry.io/registry/dbg2introns" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA" + "@id": "https://bioregistry.io/registry/pubchem.element" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC" + "@id": "https://bioregistry.io/registry/nihreporter.project" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE" + "@id": "https://bioregistry.io/registry/pato" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SISU" + "@id": "https://bioregistry.io/registry/edda" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MDM" + "@id": "https://bioregistry.io/registry/pathoplant" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN" + "@id": "https://bioregistry.io/registry/ark" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMO" + "@id": "https://bioregistry.io/registry/signaling-gateway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB" + "@id": "https://bioregistry.io/registry/c4o" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT" + "@id": "https://bioregistry.io/registry/dctypes" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP" + "@id": "https://bioregistry.io/registry/huge" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB" + "@id": "https://bioregistry.io/registry/agsc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE" + "@id": "https://bioregistry.io/registry/illumina.probe" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY" + "@id": "https://bioregistry.io/registry/glida.gpcr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION" + "@id": "https://bioregistry.io/registry/ardb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/void" + "@id": "https://bioregistry.io/registry/aaindex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR" + "@id": "https://bioregistry.io/registry/glycomedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB" + "@id": "https://bioregistry.io/registry/cstr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO" + "@id": "https://bioregistry.io/registry/oma.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME" + "@id": "https://bioregistry.io/registry/cosmic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA" + "@id": "https://bioregistry.io/registry/gear" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE" + "@id": "https://bioregistry.io/registry/gemet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC" + "@id": "https://bioregistry.io/registry/spdx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN" + "@id": "https://bioregistry.io/registry/gnpis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB" + "@id": "https://bioregistry.io/registry/icd9" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/REX" + "@id": "https://bioregistry.io/registry/3dmet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AAO" + "@id": "https://bioregistry.io/registry/spbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX" + "@id": "https://bioregistry.io/registry/venom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI" + "@id": "https://bioregistry.io/registry/noncodev4.rna" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO" + "@id": "https://bioregistry.io/registry/tigrfam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT" + "@id": "https://bioregistry.io/registry/vmhgene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN" + "@id": "https://bioregistry.io/registry/genewiki" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN" + "@id": "https://bioregistry.io/registry/mirbase.family" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP" + "@id": "https://bioregistry.io/registry/shibase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOI" + "@id": "https://bioregistry.io/registry/nlx.func" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB" + "@id": "https://bioregistry.io/registry/ctd.chemical" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX" + "@id": "https://bioregistry.io/registry/co_334" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE" + "@id": "https://bioregistry.io/registry/rebec" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY" + "@id": "https://bioregistry.io/registry/grassbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE" + "@id": "https://bioregistry.io/registry/asap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA" + "@id": "https://bioregistry.io/registry/wikigenes" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO" + "@id": "https://bioregistry.io/registry/ngbo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STRING" + "@id": "https://bioregistry.io/registry/salk" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS" + "@id": "https://bioregistry.io/registry/dictybase.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIP" + "@id": "https://bioregistry.io/registry/icdc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION" + "@id": "https://bioregistry.io/registry/gnomad" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA" + "@id": "https://bioregistry.io/registry/cell_biolabs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN" + "@id": "https://bioregistry.io/registry/medlineplus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION" + "@id": "https://bioregistry.io/registry/dc_cl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION" + "@id": "https://bioregistry.io/registry/labo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAS" + "@id": "https://bioregistry.io/registry/tgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN" + "@id": "https://bioregistry.io/registry/sedml.language" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY" + "@id": "https://bioregistry.io/registry/epd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BILA" + "@id": "https://bioregistry.io/registry/metanetx.compartment" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC" + "@id": "https://bioregistry.io/registry/ricenetdb.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY" + "@id": "https://bioregistry.io/registry/co_370" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB" + "@id": "https://bioregistry.io/registry/geonames" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2" + "@id": "https://bioregistry.io/registry/probesanddrugs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase" + "@id": "https://bioregistry.io/registry/ecn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE" + "@id": "https://bioregistry.io/registry/bto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE" + "@id": "https://bioregistry.io/registry/pso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGN" + "@id": "https://bioregistry.io/registry/biomodels.kisao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND" + "@id": "https://bioregistry.io/registry/rnavdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECO" + "@id": "https://bioregistry.io/registry/dicom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE" + "@id": "https://bioregistry.io/registry/ligea" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPO" + "@id": "https://bioregistry.io/registry/aeon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO" + "@id": "https://bioregistry.io/registry/paleodb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE" + "@id": "https://bioregistry.io/registry/leafsnap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen" + "@id": "https://bioregistry.io/registry/col" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAO" + "@id": "https://bioregistry.io/registry/loqate" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AERO" + "@id": "https://bioregistry.io/registry/multicellds.snapshot" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ELM" + "@id": "https://bioregistry.io/registry/cath.superfamily" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB" + "@id": "https://bioregistry.io/registry/nmpdr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH" + "@id": "https://bioregistry.io/registry/oridb.schizo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN" + "@id": "https://bioregistry.io/registry/nlx.oen" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK" + "@id": "https://bioregistry.io/registry/rnajunction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PR" + "@id": "https://bioregistry.io/registry/atc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT" + "@id": "https://bioregistry.io/registry/co_322" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER" + "@id": "https://bioregistry.io/registry/insdc.gcf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIO" + "@id": "https://bioregistry.io/registry/pgdso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP" + "@id": "https://bioregistry.io/registry/chiro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMF" + "@id": "https://bioregistry.io/registry/mmusdv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS" + "@id": "https://bioregistry.io/registry/discoverx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcat" + "@id": "https://bioregistry.io/registry/eggnog" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE" + "@id": "https://bioregistry.io/registry/pd_st" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDD" + "@id": "https://bioregistry.io/registry/orthodb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS" + "@id": "https://bioregistry.io/registry/meddra" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RO" + "@id": "https://bioregistry.io/registry/radiomics" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XL" + "@id": "https://bioregistry.io/registry/hgmd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCI" + "@id": "https://bioregistry.io/registry/cas" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATC" + "@id": "https://bioregistry.io/registry/pigqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA" + "@id": "https://bioregistry.io/registry/upheno" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEP" + "@id": "https://bioregistry.io/registry/splicenest" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL" + "@id": "https://bioregistry.io/registry/issn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPID" + "@id": "https://bioregistry.io/registry/ido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD" + "@id": "https://bioregistry.io/registry/cdpd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA" + "@id": "https://bioregistry.io/registry/emaps" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY" + "@id": "https://bioregistry.io/registry/webelements" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DATF" + "@id": "https://bioregistry.io/registry/kegg.disease" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG" + "@id": "https://bioregistry.io/registry/gtr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS" + "@id": "https://bioregistry.io/registry/ncbi.genome" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE" + "@id": "https://bioregistry.io/registry/imdrf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM" + "@id": "https://bioregistry.io/registry/fyler" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE" + "@id": "https://bioregistry.io/registry/go.model" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE" + "@id": "https://bioregistry.io/registry/caro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS" + "@id": "https://bioregistry.io/registry/datanator.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID" + "@id": "https://bioregistry.io/registry/biorxiv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL" + "@id": "https://bioregistry.io/registry/lipro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST" + "@id": "https://bioregistry.io/registry/igsn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB" + "@id": "https://bioregistry.io/registry/vbrc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PW" + "@id": "https://bioregistry.io/registry/flopo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL" + "@id": "https://bioregistry.io/registry/merops.clan" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO" + "@id": "https://bioregistry.io/registry/bfo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS" + "@id": "https://bioregistry.io/registry/vfdb.genus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNII" + "@id": "https://bioregistry.io/registry/mfomd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG" + "@id": "https://bioregistry.io/registry/aro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB" + "@id": "https://bioregistry.io/registry/nci.drug" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DUO" + "@id": "https://bioregistry.io/registry/wbbt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR" + "@id": "https://bioregistry.io/registry/planp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS" + "@id": "https://bioregistry.io/registry/encode" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND" + "@id": "https://bioregistry.io/registry/easychair.cfp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS" + "@id": "https://bioregistry.io/registry/gfo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/xml" + "@id": "https://bioregistry.io/registry/vfdb.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOA" + "@id": "https://bioregistry.io/registry/ncats.bioplanet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ABS" + "@id": "https://bioregistry.io/registry/opb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM" + "@id": "https://bioregistry.io/registry/hepro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMO" + "@id": "https://bioregistry.io/registry/opm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN" + "@id": "https://bioregistry.io/registry/cao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO" + "@id": "https://bioregistry.io/registry/pdumdv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO" + "@id": "https://bioregistry.io/registry/homd.seq" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UO" + "@id": "https://bioregistry.io/registry/did" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND" + "@id": "https://bioregistry.io/registry/4dn.biosource" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE" + "@id": "https://bioregistry.io/registry/tair.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL" + "@id": "https://bioregistry.io/registry/nlx.anat" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS" + "@id": "https://bioregistry.io/registry/iresite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO" + "@id": "https://bioregistry.io/registry/metatlas.metabolite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS" + "@id": "https://bioregistry.io/registry/funcbase.yeast" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG" + "@id": "https://bioregistry.io/registry/uniprot.ptm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DARC" + "@id": "https://bioregistry.io/registry/ctd.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO" + "@id": "https://bioregistry.io/registry/lgic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE" + "@id": "https://bioregistry.io/registry/chemrof" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE" + "@id": "https://bioregistry.io/registry/cio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMR" + "@id": "https://bioregistry.io/registry/jrct" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BTO" + "@id": "https://bioregistry.io/registry/dgrc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD" + "@id": "https://bioregistry.io/registry/atfdb.family" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE" + "@id": "https://bioregistry.io/registry/drks" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC" + "@id": "https://bioregistry.io/registry/cordis.article" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RESID" + "@id": "https://bioregistry.io/registry/string" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE" + "@id": "https://bioregistry.io/registry/cdao" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPD" + "@id": "https://bioregistry.io/registry/ncbigi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE" + "@id": "https://bioregistry.io/registry/repeatsdb.structure" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN" + "@id": "https://bioregistry.io/registry/scholia.resource" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHD" + "@id": "https://bioregistry.io/registry/grin.taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT" + "@id": "https://bioregistry.io/registry/drugbank.bioentity" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO" + "@id": "https://bioregistry.io/registry/ped" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APD" + "@id": "https://bioregistry.io/registry/mesh.2012" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO" + "@id": "https://bioregistry.io/registry/grid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS" + "@id": "https://bioregistry.io/registry/isni" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGD" + "@id": "https://bioregistry.io/registry/peco" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB" + "@id": "https://bioregistry.io/registry/multicellds.cell_line" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO" + "@id": "https://bioregistry.io/registry/ensembl.plant" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE" + "@id": "https://bioregistry.io/registry/semapv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PECO" + "@id": "https://bioregistry.io/registry/ero" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK" + "@id": "https://bioregistry.io/registry/mobidb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCM" + "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MS" + "@id": "https://bioregistry.io/registry/sbo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD" + "@id": "https://bioregistry.io/registry/ecocore" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY" + "@id": "https://bioregistry.io/registry/frbr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPI" + "@id": "https://bioregistry.io/registry/napdi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING" + "@id": "https://bioregistry.io/registry/dbprobe" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY" + "@id": "https://bioregistry.io/registry/nando" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB" + "@id": "https://bioregistry.io/registry/topdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH" + "@id": "https://bioregistry.io/registry/pina" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCO" + "@id": "https://bioregistry.io/registry/biotools" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH" + "@id": "https://bioregistry.io/registry/rs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB" + "@id": "https://bioregistry.io/registry/go.ref" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI" + "@id": "https://bioregistry.io/registry/gnd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST" + "@id": "https://bioregistry.io/registry/datacommons" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH" + "@id": "https://bioregistry.io/registry/archdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE" + "@id": "https://bioregistry.io/registry/flymine.chromosome" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAO" + "@id": "https://bioregistry.io/registry/imsr_em" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS" + "@id": "https://bioregistry.io/registry/metlin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG" + "@id": "https://bioregistry.io/registry/nlm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC" + "@id": "https://bioregistry.io/registry/upa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB" + "@id": "https://bioregistry.io/registry/insdc.gca" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB" + "@id": "https://bioregistry.io/registry/tfclass" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP" + "@id": "https://bioregistry.io/registry/tctr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME" + "@id": "https://bioregistry.io/registry/lcsh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA" + "@id": "https://bioregistry.io/registry/pharmgkb.drug" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE" + "@id": "https://bioregistry.io/registry/mosaic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET" + "@id": "https://bioregistry.io/registry/scoro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRON" + "@id": "https://bioregistry.io/registry/bdsc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS" + "@id": "https://bioregistry.io/registry/millipore" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB" + "@id": "https://bioregistry.io/registry/skosxl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL" + "@id": "https://bioregistry.io/registry/nlx.qual" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME" + "@id": "https://bioregistry.io/registry/pmc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD" + "@id": "https://bioregistry.io/registry/co_321" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN" + "@id": "https://bioregistry.io/registry/bitbucket" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCO" + "@id": "https://bioregistry.io/registry/om" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPO" + "@id": "https://bioregistry.io/registry/fbrf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY" + "@id": "https://bioregistry.io/registry/emea" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD" + "@id": "https://bioregistry.io/registry/panther.pathway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB" + "@id": "https://bioregistry.io/registry/pdb-ccd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP" + "@id": "https://bioregistry.io/registry/irct" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XCO" + "@id": "https://bioregistry.io/registry/unipathway.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO" + "@id": "https://bioregistry.io/registry/cubedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPA" + "@id": "https://bioregistry.io/registry/oid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT" + "@id": "https://bioregistry.io/registry/zp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL" + "@id": "https://bioregistry.io/registry/mw.study" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS" + "@id": "https://bioregistry.io/registry/seinet" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE" + "@id": "https://bioregistry.io/registry/odor" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM" + "@id": "https://bioregistry.io/registry/edam.data" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA" + "@id": "https://bioregistry.io/registry/ttd.drug" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE" + "@id": "https://bioregistry.io/registry/cmecs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB" + "@id": "https://bioregistry.io/registry/seed" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZP" + "@id": "https://bioregistry.io/registry/oboinowl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms" + "@id": "https://bioregistry.io/registry/mesh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER" + "@id": "https://bioregistry.io/registry/ogsf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI" + "@id": "https://bioregistry.io/registry/begdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER" + "@id": "https://bioregistry.io/registry/crop2ml" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWO" + "@id": "https://bioregistry.io/registry/hms.lincs.cell" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012" + "@id": "https://bioregistry.io/registry/wormpep" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL" + "@id": "https://bioregistry.io/registry/uniprot.keyword" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG" + "@id": "https://bioregistry.io/registry/owl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank" + "@id": "https://bioregistry.io/registry/ccds" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BFO" + "@id": "https://bioregistry.io/registry/lei" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA" + "@id": "https://bioregistry.io/registry/vt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APO" + "@id": "https://bioregistry.io/registry/fbol" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RS" + "@id": "https://bioregistry.io/registry/rcb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE" + "@id": "https://bioregistry.io/registry/jaxmice" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META" + "@id": "https://bioregistry.io/registry/ukprn" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB" + "@id": "https://bioregistry.io/registry/mirex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX" + "@id": "https://bioregistry.io/registry/arxiv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NASC" + "@id": "https://bioregistry.io/registry/mo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE" + "@id": "https://bioregistry.io/registry/rex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB" + "@id": "https://bioregistry.io/registry/gxa.expt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS" + "@id": "https://bioregistry.io/registry/drugbank.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XAO" + "@id": "https://bioregistry.io/registry/vandf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY" + "@id": "https://bioregistry.io/registry/cabri" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST" + "@id": "https://bioregistry.io/registry/storedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE" + "@id": "https://bioregistry.io/registry/slctr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq" + "@id": "https://bioregistry.io/registry/gmd.analyte" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL" + "@id": "https://bioregistry.io/registry/dto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI" + "@id": "https://bioregistry.io/registry/asin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST" + "@id": "https://bioregistry.io/registry/dbest" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION" + "@id": "https://bioregistry.io/registry/phosphopoint.kinase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE" + "@id": "https://bioregistry.io/registry/wicell" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PO" + "@id": "https://bioregistry.io/registry/conso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB" + "@id": "https://bioregistry.io/registry/prints" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EO" + "@id": "https://bioregistry.io/registry/mmp.fun" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB" + "@id": "https://bioregistry.io/registry/datanator.metabolite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RRID" + "@id": "https://bioregistry.io/registry/treefam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION" + "@id": "https://bioregistry.io/registry/conference" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant" + "@id": "https://bioregistry.io/registry/pwo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP" + "@id": "https://bioregistry.io/registry/ricegap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE" + "@id": "https://bioregistry.io/registry/hipsci" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB" + "@id": "https://bioregistry.io/registry/nemo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAX" + "@id": "https://bioregistry.io/registry/cgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER" + "@id": "https://bioregistry.io/registry/licebase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE" + "@id": "https://bioregistry.io/registry/pass2" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL" + "@id": "https://bioregistry.io/registry/metanetx.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS" + "@id": "https://bioregistry.io/registry/mf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB" + "@id": "https://bioregistry.io/registry/co_333" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET" + "@id": "https://bioregistry.io/registry/hbvar" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE" + "@id": "https://bioregistry.io/registry/mamo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE" + "@id": "https://bioregistry.io/registry/itis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB" + "@id": "https://bioregistry.io/registry/cldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST" + "@id": "https://bioregistry.io/registry/jgi.proposal" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PORO" + "@id": "https://bioregistry.io/registry/glida.ligand" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB" + "@id": "https://bioregistry.io/registry/fungidb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE" + "@id": "https://bioregistry.io/registry/fao.asfis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT" + "@id": "https://bioregistry.io/registry/smid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY" + "@id": "https://bioregistry.io/registry/flu" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE" + "@id": "https://bioregistry.io/registry/miaa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MO" + "@id": "https://bioregistry.io/registry/emdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAO" + "@id": "https://bioregistry.io/registry/cido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN" + "@id": "https://bioregistry.io/registry/storedb.study" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIND" + "@id": "https://bioregistry.io/registry/to" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND" + "@id": "https://bioregistry.io/registry/sdap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS" + "@id": "https://bioregistry.io/registry/hpath" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP" + "@id": "https://bioregistry.io/registry/odam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC" + "@id": "https://bioregistry.io/registry/arraymap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERO" + "@id": "https://bioregistry.io/registry/symp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene" + "@id": "https://bioregistry.io/registry/hpscreg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT" + "@id": "https://bioregistry.io/registry/insdc.sra" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN" + "@id": "https://bioregistry.io/registry/cdno" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AEO" + "@id": "https://bioregistry.io/registry/vhog" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA" + "@id": "https://bioregistry.io/registry/shex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL" + "@id": "https://bioregistry.io/registry/rdf" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO" + "@id": "https://bioregistry.io/registry/zfin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt" + "@id": "https://bioregistry.io/registry/iceberg.ime" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION" + "@id": "https://bioregistry.io/registry/nif.std" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME" + "@id": "https://bioregistry.io/registry/mmdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN" + "@id": "https://bioregistry.io/registry/p3db.site" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD" + "@id": "https://bioregistry.io/registry/void" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET" + "@id": "https://bioregistry.io/registry/hoip" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK" + "@id": "https://bioregistry.io/registry/modeldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM" + "@id": "https://bioregistry.io/registry/come" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND" + "@id": "https://bioregistry.io/registry/pgx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO" + "@id": "https://bioregistry.io/registry/fbsp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS" + "@id": "https://bioregistry.io/registry/molmedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION" + "@id": "https://bioregistry.io/registry/amphx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON" + "@id": "https://bioregistry.io/registry/fairsharing" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE" + "@id": "https://bioregistry.io/registry/poro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LRG" + "@id": "https://bioregistry.io/registry/interfil" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM" + "@id": "https://bioregistry.io/registry/soybase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR" + "@id": "https://bioregistry.io/registry/apd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC" + "@id": "https://bioregistry.io/registry/ecacc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE" + "@id": "https://bioregistry.io/registry/grin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGX" + "@id": "https://bioregistry.io/registry/pmap.substratedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE" + "@id": "https://bioregistry.io/registry/pfam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI" + "@id": "https://bioregistry.io/registry/envipath" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME" + "@id": "https://bioregistry.io/registry/hagr.genage" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR" + "@id": "https://bioregistry.io/registry/bigg.compartment" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO" + "@id": "https://bioregistry.io/registry/biominder" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD" + "@id": "https://bioregistry.io/registry/cemo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM" + "@id": "https://bioregistry.io/registry/eol" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS" + "@id": "https://bioregistry.io/registry/citexplore" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTO" + "@id": "https://bioregistry.io/registry/tgma" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FIX" + "@id": "https://bioregistry.io/registry/duo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER" + "@id": "https://bioregistry.io/registry/ydpm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013" + "@id": "https://bioregistry.io/registry/napp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION" + "@id": "https://bioregistry.io/registry/sfam" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP" + "@id": "https://bioregistry.io/registry/fbcv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE" + "@id": "https://bioregistry.io/registry/aop" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBA" + "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR" + "@id": "https://bioregistry.io/registry/combine.specifications" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT" + "@id": "https://bioregistry.io/registry/nmdc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EV" + "@id": "https://bioregistry.io/registry/genefarm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl" + "@id": "https://bioregistry.io/registry/hso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM" + "@id": "https://bioregistry.io/registry/coconut" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO" + "@id": "https://bioregistry.io/registry/scpd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT" + "@id": "https://bioregistry.io/registry/brenda" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP" + "@id": "https://bioregistry.io/registry/mex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CARO" + "@id": "https://bioregistry.io/registry/pgs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY" + "@id": "https://bioregistry.io/registry/icdo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND" + "@id": "https://bioregistry.io/registry/insdc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP" + "@id": "https://bioregistry.io/registry/biocyc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND" + "@id": "https://bioregistry.io/registry/mpath" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO" + "@id": "https://bioregistry.io/registry/geo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TADS" + "@id": "https://bioregistry.io/registry/tred" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK" + "@id": "https://bioregistry.io/registry/pharmgkb.pathways" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ" + "@id": "https://bioregistry.io/registry/time" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PINA" + "@id": "https://bioregistry.io/registry/fungorum" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE" + "@id": "https://bioregistry.io/registry/erm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER" + "@id": "https://bioregistry.io/registry/kegg.rclass" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene" + "@id": "https://bioregistry.io/registry/doap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE" + "@id": "https://bioregistry.io/registry/redfly" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT" + "@id": "https://bioregistry.io/registry/xuo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE" + "@id": "https://bioregistry.io/registry/molbase.sheffield" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO" + "@id": "https://bioregistry.io/registry/icd10" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes" + "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP" + "@id": "https://bioregistry.io/registry/fplx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB" + "@id": "https://bioregistry.io/registry/nif.ext" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST" + "@id": "https://bioregistry.io/registry/ecyano.entity" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EFO" + "@id": "https://bioregistry.io/registry/gwascentral.study" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS" + "@id": "https://bioregistry.io/registry/vto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB" + "@id": "https://bioregistry.io/registry/pandit" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLU" + "@id": "https://bioregistry.io/registry/micro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC" + "@id": "https://bioregistry.io/registry/bitterdb.rec" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein" + "@id": "https://bioregistry.io/registry/utrdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBO" + "@id": "https://bioregistry.io/registry/kegg.drug" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN" + "@id": "https://bioregistry.io/registry/px" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED" + "@id": "https://bioregistry.io/registry/piroplasma" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT" + "@id": "https://bioregistry.io/registry/gmd.ref" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS" + "@id": "https://bioregistry.io/registry/clo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINID" + "@id": "https://bioregistry.io/registry/unii" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP" + "@id": "https://bioregistry.io/registry/funcbase.mouse" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL" + "@id": "https://bioregistry.io/registry/datanator.gene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype" + "@id": "https://bioregistry.io/registry/genbank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION" + "@id": "https://bioregistry.io/registry/ttd.target" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YID" + "@id": "https://bioregistry.io/registry/jcsd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB" + "@id": "https://bioregistry.io/registry/dc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO" + "@id": "https://bioregistry.io/registry/bel" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF" + "@id": "https://bioregistry.io/registry/nsc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBO" + "@id": "https://bioregistry.io/registry/ligandexpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE" + "@id": "https://bioregistry.io/registry/syoid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMP" + "@id": "https://bioregistry.io/registry/beiresources" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO" + "@id": "https://bioregistry.io/registry/foodb.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS" + "@id": "https://bioregistry.io/registry/itmctr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC" + "@id": "https://bioregistry.io/registry/doi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP" + "@id": "https://bioregistry.io/registry/ncit" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC" + "@id": "https://bioregistry.io/registry/biocarta.pathway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC" + "@id": "https://bioregistry.io/registry/dictybase.est" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dc" + "@id": "https://bioregistry.io/registry/mir" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH" + "@id": "https://bioregistry.io/registry/scopus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF" + "@id": "https://bioregistry.io/registry/fbtc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT" + "@id": "https://bioregistry.io/registry/worldavatar.kin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO" + "@id": "https://bioregistry.io/registry/morpheus" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBD" + "@id": "https://bioregistry.io/registry/microsporidia" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/oa" + "@id": "https://bioregistry.io/registry/ico" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT" + "@id": "https://bioregistry.io/registry/sssom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM" + "@id": "https://bioregistry.io/registry/molbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRO" + "@id": "https://bioregistry.io/registry/autdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB" + "@id": "https://bioregistry.io/registry/vbo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB" + "@id": "https://bioregistry.io/registry/nmrshiftdb2" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS" + "@id": "https://bioregistry.io/registry/innatedb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL" + "@id": "https://bioregistry.io/registry/publons.publication" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD" + "@id": "https://bioregistry.io/registry/caps" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS" + "@id": "https://bioregistry.io/registry/bbkg" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS" + "@id": "https://bioregistry.io/registry/phipo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON" + "@id": "https://bioregistry.io/registry/ssbd.project" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioContext" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://github.com/prefixcommons/biocontext" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CHEBI" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://bioregistry.io/metaregistry/biocontext/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - } - }, - { - "@id": "https://bioregistry.io/registry/ecolexicon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EcoLexicon" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/obcs" + }, { - "@value": "environmental science" + "@id": "https://bioregistry.io/registry/ricenetdb.protein" }, { - "@value": "ecology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ecolexicon.ugr.es/en/index.htm" - }, - "https://bioregistry.io/schema/#0000005": "canal", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecolexicon" - } - }, - { - "@id": "https://registry.identifiers.org/registry/massive", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hzdzq8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-5530-0017", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Milton H. Saier, Jr." - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "msaier@ucsd.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/deo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/deo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Discourse Elements Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.39fd58" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/deo" - }, - "https://bioregistry.io/schema/#0000005": "Reference", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/deo/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/deo/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/deo/Reference" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "deo" - } - }, - { - "@id": "https://orcid.org/0000-0002-6020-5919", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Elizabeth Arnaud" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/registry/skm" + }, { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://bioregistry.io/registry/wikipathways" }, { - "@value": "e.arnaud@cgiar.org" - } - ] - }, - { - "@id": "http://www.ontobee.org/ontology/ZFS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/dev.ga4ghdos", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Assists in resolving data across cloud resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Development Data Object Service" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/co_350" + }, { - "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos" + "@id": "https://bioregistry.io/registry/csd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS" + "@id": "https://bioregistry.io/registry/dg5b0d" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://github.com/ga4gh/data-object-service-schemas" - }, - "https://bioregistry.io/schema/#0000005": "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00", - "https://bioregistry.io/schema/#0000006": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9\\-:#\\.]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dev.ga4ghdos" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/biominder", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of the dielectric properties of biological tissues.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bio-MINDER Tissue Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/epo" + }, { - "@id": "https://registry.identifiers.org/registry/biominder" + "@id": "https://bioregistry.io/registry/unists" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER" + "@id": "https://bioregistry.io/registry/kestrelo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://datalab.rwth-aachen.de/MINDER" - }, - "https://bioregistry.io/schema/#0000005": "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3", - "https://bioregistry.io/schema/#0000006": "https://datalab.rwth-aachen.de/MINDER/resource/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://datalab.rwth-aachen.de/MINDER/resource/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://datalab.rwth-aachen.de/MINDER/resource/aef4c195-9cf9-46db-a12a-7cfd1ff3eec3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biominder" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/bgee.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bgee family" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/ppo" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family" + "@id": "https://bioregistry.io/registry/mondo" }, { - "@id": "https://registry.identifiers.org/registry/bgee.family" + "@id": "https://bioregistry.io/registry/orphanet.ordo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bgee.unil.ch/bgee/bgee" - }, - "https://bioregistry.io/schema/#0000005": "ENSFM00500000270089", - "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1", - "https://bioregistry.io/schema/#0000008": "^(ENSFM|ENSGTV:)\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=ENSFM00500000270089" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bgee.family" - } - }, - { - "@id": "https://bioregistry.io/registry/bootstrep", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Regulation Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/modeldb.concept" + }, { - "@id": "https://www.obofoundry.org/ontology/bootstrep" + "@id": "https://bioregistry.io/registry/unigene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bspo" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/ddpheno" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BOOTSTREP_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N60d1d3e7c3a04448a8f402e49be1dc65" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BOOTSTREP_", - "https://bioregistry.io/schema/#0000029": { - "@value": "bootstrep" - } - }, - { - "@id": "_:N60d1d3e7c3a04448a8f402e49be1dc65", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vivian Lee" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "vlee@ebi.ac.uk" - } - }, - { - "@id": "https://bioregistry.io/registry/togovar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TogoVar" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/togovar" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://grch38.togovar.org/" - }, - "https://bioregistry.io/schema/#0000005": "tgv139393198", - "https://bioregistry.io/schema/#0000006": "https://grch38.togovar.org/variant/$1", - "https://bioregistry.io/schema/#0000008": "^tgv[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://grch38.togovar.org/variant/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://grch38.togovar.org/variant/tgv139393198" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "togovar" - } - }, - { - "@id": "https://orcid.org/0000-0001-5528-0087", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Roman Laskowski" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "roman@ebi.ac.uk" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://edamontology.org/data_1003", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/lincs.data", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/loggerhead", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Loggerhead nesting" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/cteno" + }, { - "@id": "https://www.obofoundry.org/ontology/loggerhead" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/rfam" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/hinv.protein" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mesquiteproject.org/ontology/Loggerhead/index.html" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LOGGERHEAD_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6512-3296" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LOGGERHEAD_", - "https://bioregistry.io/schema/#0000029": { - "@value": "loggerhead" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b7z8by", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/funcbase.human", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FuncBase Human" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/perkinelmer" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human" + "@id": "https://bioregistry.io/registry/uniprot.location" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.human" + "@id": "https://bioregistry.io/registry/greengenes" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://func.mshri.on.ca/human/" - }, - "https://bioregistry.io/schema/#0000005": "119514", - "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/human/genes/list_functional_scores/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/human/genes/list_functional_scores/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://func.mshri.on.ca/human/genes/list_functional_scores/119514" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "funcbase.human" - } - }, - { - "@id": "https://bioregistry.io/registry/cteno", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An anatomical and developmental ontology for ctenophores (Comb Jellies)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/ctenophore-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ctenophore Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/iso.3166" + }, { - "@id": "http://aber-owl.net/ontology/CTENO" + "@id": "https://bioregistry.io/registry/co_359" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTENO" + "@id": "https://bioregistry.io/registry/sgn" }, { - "@id": "http://www.ontobee.org/ontology/CTENO" + "@id": "https://bioregistry.io/registry/s_mart_db" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO" + "@id": "https://bioregistry.io/registry/gabi" }, { - "@id": "https://www.obofoundry.org/ontology/cteno" + "@id": "https://bioregistry.io/registry/wb.rnai" }, { - "@id": "https://fairsharing.org/FAIRsharing.mgxgza" + "@id": "https://bioregistry.io/registry/cath" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/hivreagentprogram" + }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/ligandbook" }, { - "@value": "developmental biology" + "@id": "https://bioregistry.io/registry/mmo" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/fma" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/ctenophore-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000047", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CTENO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cteno.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/xl" + }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/odrl" }, { - "@id": "https://bioregistry.io/registry/ro" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CTENO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CTENO_0000047" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cteno" - } - }, - { - "@id": "http://aber-owl.net/ontology/CIDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rfLD2u", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rnamods", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/miriam.collection", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/clingene" + }, { - "@id": "https://bioregistry.io/registry/miriam" + "@id": "https://bioregistry.io/registry/cpc" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MIRIAM Registry collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/sweetrealm" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION" + "@id": "https://bioregistry.io/registry/neurovault.collection" }, { - "@id": "https://registry.identifiers.org/registry/miriam.collection" + "@id": "https://bioregistry.io/registry/cp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/miriam/" - }, - "https://bioregistry.io/schema/#0000005": "00000008", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/miriam/main/$1", - "https://bioregistry.io/schema/#0000008": "^000\\d{5}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/miriam/main/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/miriam/main/00000008" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "miriam.collection" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bcjrnq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0024", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/glycomedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/gold", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomes Online Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/idoden" + }, { - "@id": "https://registry.identifiers.org/registry/gold" + "@id": "https://bioregistry.io/registry/neuronames" }, { - "@id": "https://www.re3data.org/repository/r3d100010808" + "@id": "https://bioregistry.io/registry/gbif" }, { - "@id": "https://registry.bio2kg.org/resource/gold" + "@id": "https://bioregistry.io/registry/bootstrep" }, { - "@id": "https://fairsharing.org/FAIRsharing.5q1p14" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/gpcrdb" + }, { - "@value": "genomics" + "@id": "https://bioregistry.io/registry/ohd" }, { - "@value": "phylogenetics" + "@id": "https://bioregistry.io/registry/nlx.res" }, { - "@value": "metagenomics" + "@id": "https://bioregistry.io/registry/nemo2" }, { - "@value": "ontology and terminology" + "@id": "https://bioregistry.io/registry/oclc" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/hgnc" }, { - "@value": "metabolomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gold.jgi.doe.gov/" - }, - "https://bioregistry.io/schema/#0000005": "Gs0000008", - "https://bioregistry.io/schema/#0000006": "https://gold.jgi.doe.gov/resolver?id=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z][a-z][0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://gold.jgi.doe.gov/resolver?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://gold.jgi.doe.gov/resolver?id=Gs0000008" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gold" - } - }, - { - "@id": "https://registry.identifiers.org/registry/glycopost", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010672", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/cemo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/NuriaQueralt/covid19-epidemiology-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The COVID-19 epidemiology and monitoring ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/NuriaQueralt/covid19-epidemiology-ontology" - }, - "https://bioregistry.io/schema/#0000005": "secondary_attack_rate", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/cemo/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-z_-]+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/NuriaQueralt/covid19-epidemiology-ontology/main/owl/cemo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0169-8159" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/cemo/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/cemo/secondary_attack_rate" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cemo" - } - }, - { - "@id": "https://bioregistry.io/registry/planp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Planarian Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/gainesville.core" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp" + "@id": "https://bioregistry.io/registry/eccode" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PLANP" + "@id": "https://bioregistry.io/registry/scopus.publication" }, { - "@id": "http://www.ontobee.org/ontology/PLANP" + "@id": "https://bioregistry.io/registry/co_330" }, { - "@id": "https://www.obofoundry.org/ontology/planp" + "@id": "https://bioregistry.io/registry/graingenes.symbol" }, { - "@id": "http://aber-owl.net/ontology/PLANP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/runbiosimulations" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/astd" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/planarian-phenotype-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLANP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/planp.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/elm" + }, { - "@id": "https://bioregistry.io/registry/go" + "@id": "https://bioregistry.io/registry/repeatsdb.protein" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/xenbase" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/registry/ascl" }, { - "@id": "https://bioregistry.io/registry/plana" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3528-5267" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLANP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PLANP_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "planp" - } - }, - { - "@id": "https://registry.identifiers.org/registry/yid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/cheminf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/semanticchemistry/semanticchemistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Information Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/ird.segment" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf" + "@id": "https://bioregistry.io/registry/tahh" }, { - "@id": "https://fairsharing.org/FAIRsharing.sjhvyy" + "@id": "https://bioregistry.io/registry/ontoneo" }, { - "@id": "http://aber-owl.net/ontology/CHEMINF" + "@id": "https://bioregistry.io/registry/scr" }, { - "@id": "http://www.ontobee.org/ontology/CHEMINF" + "@id": "https://bioregistry.io/registry/salmon" }, { - "@id": "https://www.obofoundry.org/ontology/cheminf" + "@id": "https://bioregistry.io/registry/mgnify.analysis" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF" + "@id": "https://bioregistry.io/registry/nist" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ssbd.dataset" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/bcgo" }, { - "@value": "biochemistry" + "@id": "https://bioregistry.io/registry/nucc.taxonomy" }, { - "@value": "chemistry" + "@id": "https://bioregistry.io/registry/omit" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/mge" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/semanticchemistry/semanticchemistry" - }, - "https://bioregistry.io/schema/#0000005": "000410", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHEMINF_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/proco" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHEMINF_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CHEMINF_000410" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cheminf" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/mmp.fun", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MarFun is manually curated database for marine fungi which is a part of the MAR databases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MarFun" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/mmp.fun" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mmp.sfb.uit.no/databases/marfun" - }, - "https://bioregistry.io/schema/#0000005": "MMP3888430", - "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marfun/#/records/$1", - "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marfun/#/records/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mmp.sfb.uit.no/databases/marfun/#/records/MMP3888430" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmp.fun" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/amphx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tke3y2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/doco", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/doco" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Document Components Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.162003" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/doco" - }, - "https://bioregistry.io/schema/#0000005": "Paragraph", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/doco/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/doco/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/doco/Paragraph" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "doco" - } - }, - { - "@id": "https://bioregistry.io/registry/sabiork.kineticrecord", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SABIO Reaction Kinetics" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/olatdv" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD" + "@id": "https://bioregistry.io/registry/hinv.transcript" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK" + "@id": "https://bioregistry.io/registry/deo" }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic" + "@id": "https://bioregistry.io/registry/fishbase.species" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord" + "@id": "https://bioregistry.io/registry/cellbank.australia" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/co_339" + }, { - "@value": "enzyme" + "@id": "https://bioregistry.io/registry/glycopost" }, { - "@value": "kinetics" + "@id": "https://bioregistry.io/registry/bionumbers" }, { - "@value": "classification" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sabiork.h-its.org/" - }, - "https://bioregistry.io/schema/#0000005": "5046", - "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=5046" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sabiork.kineticrecord" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0009-0009-3816-8777", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Carsten Linder" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "info@hoelzel.de" - } - }, - { - "@id": "https://bioregistry.io/registry/bel", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biological Expression Language" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.dp0jvd" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "biology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biological-expression-language.github.io/" - }, - "https://bioregistry.io/schema/#0000005": "9-1-1 Complex", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0728-781X" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bel" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/sgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/tair.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6s749p", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/EUPATH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/imgt.primerdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://orcid.org/0000-0002-9744-8914", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tobias Schulze" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "tobias.schulze@ufz.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.wikidata.org/entity/P7720", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t3snf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ELM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vmhmetabolite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/CL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/genedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeneDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/medgen" + }, { - "@id": "http://edamontology.org/data_1035" + "@id": "https://bioregistry.io/registry/slm" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB" + "@id": "https://bioregistry.io/registry/kegg.metagenome" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB" + "@id": "https://bioregistry.io/registry/drugbank.condition" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB" + "@id": "https://bioregistry.io/registry/xml" }, { - "@id": "https://registry.bio2kg.org/resource/genedb" + "@id": "https://bioregistry.io/registry/intact.molecule" }, { - "@id": "https://fairsharing.org/FAIRsharing.j7esqq" + "@id": "https://bioregistry.io/registry/efo" }, { - "@id": "http://www.wikidata.org/entity/P3382" + "@id": "https://bioregistry.io/registry/bibo" }, { - "@id": "https://registry.identifiers.org/registry/genedb" + "@id": "https://bioregistry.io/registry/emmo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb" + "@id": "https://bioregistry.io/registry/img.taxon" }, { - "@id": "https://www.re3data.org/repository/r3d100010626" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ncbibook" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/hog" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/nihhesc" }, { - "@value": "sequence" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genedb.org/" - }, - "https://bioregistry.io/schema/#0000005": "LinJ.20.0070", - "https://bioregistry.io/schema/#0000006": "https://www.genedb.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^[\\w\\d\\.-]*$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.genedb.org/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genedb.org/gene/LinJ.20.0070" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "genedb" - } - }, - { - "@id": "https://bioregistry.io/registry/yetfasco", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "YeTFasCo" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/yeastract" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO" + "@id": "https://bioregistry.io/registry/ddinter.drug" }, { - "@id": "https://registry.identifiers.org/registry/yetfasco" + "@id": "https://bioregistry.io/registry/dragondb.locus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://yetfasco.ccbr.utoronto.ca/" - }, - "https://bioregistry.io/schema/#0000005": "YOR172W_571.0", - "https://bioregistry.io/schema/#0000006": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+\\_\\d+(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=YOR172W_571.0" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "yetfasco" - } - }, - { - "@id": "https://registry.identifiers.org/registry/modeldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/teddy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_2631", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mampol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pharmgkb.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010546", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/nlx.oen", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/signor.relation" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/n2t" }, { - "@id": "https://bioregistry.io/registry/nif" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: OEN Terms in Neurolex" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "neuroscience" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "https://bioregistry.io/schema/#0000005": "0001000", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/oen_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXOEN" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/oen_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/oen_0001000" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.oen" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/noaa.cameo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "chemical in the database supplied by National Oceanic and Atmospheric Administration", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CAMEO Chemicals ID" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P11931" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cameochemicals.noaa.gov" - }, - "https://bioregistry.io/schema/#0000005": "19757", - "https://bioregistry.io/schema/#0000006": "https://cameochemicals.noaa.gov/chemical/$1", - "https://bioregistry.io/schema/#0000008": "^\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cameochemicals.noaa.gov/chemical/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cameochemicals.noaa.gov/chemical/19757" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "noaa.cameo" - } - }, - { - "@id": "http://aber-owl.net/ontology/FMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/chembl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VIDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/pmp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Model Portal" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/kegg.genes" + }, { - "@id": "https://registry.bio2kg.org/resource/pmp" + "@id": "https://bioregistry.io/registry/umbbd.pathway" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp" + "@id": "https://bioregistry.io/registry/wgs84" }, { - "@id": "https://registry.identifiers.org/registry/pmp" + "@id": "https://bioregistry.io/registry/reactome" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/pid.pathway" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/occ" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/araport" }, { - "@value": "prediction" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.proteinmodelportal.org/" - }, - "https://bioregistry.io/schema/#0000005": "Q0VCA6", - "https://bioregistry.io/schema/#0000006": "http://www.proteinmodelportal.org/query/uniprot/$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.proteinmodelportal.org/query/uniprot/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.proteinmodelportal.org/query/uniprot/Q0VCA6" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pmp" - } - }, - { - "@id": "https://registry.identifiers.org/registry/metanetx.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xhpc3h", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/propreo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive proteomics data and process provenance ontology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Proteomics data and process provenance" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/anzctr" + }, { - "@id": "https://registry.bio2kg.org/resource/propreo" + "@id": "https://bioregistry.io/registry/pkdb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PROPREO" + "@id": "https://bioregistry.io/registry/agilent.probe" }, { - "@id": "https://www.obofoundry.org/ontology/propreo" + "@id": "https://bioregistry.io/registry/idocovid19" }, { - "@id": "http://aber-owl.net/ontology/PROPREO" + "@id": "https://bioregistry.io/registry/norine" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/mco" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/resid" }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/registry/dommino" }, { - "@value": "owl" + "@id": "https://bioregistry.io/registry/sgd" }, { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lsdis.cs.uga.edu/projects/glycomics/propreo/" - }, - "https://bioregistry.io/schema/#0000005": "protein", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PROPREO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/PROPREO/2/propreo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9190-4256" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PROPREO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "propreo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biocyc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-0819-0473", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Paula Duek Roggli" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Paula.Duek@sib.swiss" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mycobank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ecto", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EnvironmentOntology/environmental-exposure-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Environmental conditions, treatments and exposures ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/mpio" + }, { - "@id": "https://www.obofoundry.org/ontology/ecto" + "@id": "https://bioregistry.io/registry/genprop" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO" + "@id": "https://bioregistry.io/registry/ohmi" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto" + "@id": "https://bioregistry.io/registry/ndfrt" }, { - "@id": "http://www.ontobee.org/ontology/ECTO" + "@id": "https://bioregistry.io/registry/col.taiwan" }, { - "@id": "https://fairsharing.org/FAIRsharing.6b77ac" + "@id": "https://bioregistry.io/registry/mmp.ref" }, { - "@id": "http://aber-owl.net/ontology/ECTO" + "@id": "https://bioregistry.io/registry/mcc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECTO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/gpmdb" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/p3db.protein" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/snp2tfbs" }, { - "@value": "environmental science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EnvironmentOntology/environmental-exposure-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECTO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ecto.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/cgnc" + }, { - "@id": "https://bioregistry.io/registry/maxo" + "@id": "https://bioregistry.io/registry/uniprot.journal" }, { - "@id": "https://bioregistry.io/registry/exo" + "@id": "https://bioregistry.io/registry/pharmvar" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/co_324" }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://bioregistry.io/registry/biro" }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://bioregistry.io/registry/glytoucan" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/registry/oslc" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/registry/gold.genome" }, { - "@id": "https://bioregistry.io/registry/ncit" + "@id": "https://bioregistry.io/registry/pdb" }, { - "@id": "https://bioregistry.io/registry/nbo" + "@id": "https://bioregistry.io/registry/iev" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/multicellds.collection" }, { - "@id": "https://bioregistry.io/registry/xco" + "@id": "https://bioregistry.io/registry/amoebadb" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://bioregistry.io/registry/clb" }, { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2908-3327" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECTO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ECTO_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecto" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/myco.smeg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0084", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bartoc.org/en/node/20430", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/registry/hcao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Cell Atlas Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.humancellatlas.org" - }, - "https://bioregistry.io/schema/#0000010": { - "@id": "http://ontology.data.humancellatlas.org/ontologies/hcao/releases/2023-05-16/hcao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "hcao" - } - }, - { - "@id": "http://edamontology.org/data_2650", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/cco", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Cycle Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/xao" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/CCO" + "@id": "https://bioregistry.io/registry/ccrid" }, { - "@id": "https://registry.identifiers.org/registry/cco" + "@id": "https://bioregistry.io/registry/pdro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco" + "@id": "https://bioregistry.io/registry/inaturalist.user" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCO" + "@id": "https://bioregistry.io/registry/iedb" }, { - "@id": "https://registry.bio2kg.org/resource/cco" + "@id": "https://bioregistry.io/registry/interpro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco" + "@id": "https://bioregistry.io/registry/ddanat" }, { - "@id": "https://fairsharing.org/FAIRsharing.xhwrnr" + "@id": "https://bioregistry.io/registry/vegbank" }, { - "@id": "http://aber-owl.net/ontology/CCO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/rouge" + }, { - "@value": "genomics" + "@id": "https://bioregistry.io/registry/rgd.qtl" }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/registry/omp" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/dso" }, { - "@value": "functional genomics" + "@id": "https://bioregistry.io/registry/skos" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/niaest" }, { - "@value": "cell cycle" + "@id": "https://bioregistry.io/registry/covoc" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.semantic-systems-biology.org/apo" - }, - "https://bioregistry.io/schema/#0000005": "0000003", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.bio.ntnu.no/ontology/CCO/cco.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1171-9876" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:0000003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cco" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/worfdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wb0txg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/fbcv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/dpo" - }, - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/schema" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/ogi" }, { - "@id": "https://bioregistry.io/registry/flybase" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FlyBase/flybase-controlled-vocabulary" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyBase Controlled Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/yeastintron" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv" + "@id": "https://bioregistry.io/registry/pw" }, { - "@id": "https://registry.bio2kg.org/resource/fbcv" + "@id": "https://bioregistry.io/registry/obv" }, { - "@id": "https://www.obofoundry.org/ontology/fbcv" + "@id": "https://bioregistry.io/registry/hc.din" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv" + "@id": "https://bioregistry.io/registry/hdl" }, { - "@id": "http://www.ontobee.org/ontology/FBcv" + "@id": "https://bioregistry.io/registry/hprd" }, { - "@id": "https://fairsharing.org/FAIRsharing.6tgyxf" + "@id": "https://bioregistry.io/registry/toxoplasma" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FB-CV" + "@id": "https://bioregistry.io/registry/aop.stressor" }, { - "@id": "http://aber-owl.net/ontology/FBCV" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/nhcdr" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/aio" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/fossilworks.taxon" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/hancestro" }, { - "@value": "fly" + "@id": "https://bioregistry.io/registry/bindingdb" }, { - "@value": "descriptor" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/fbcv" - }, - "https://bioregistry.io/schema/#0000005": "0000586", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBcv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fbcv.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/ontoavida" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1373-1705" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "FBcv" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBcv_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FBcv_0000586" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fbcv" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oclc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/MFMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/do", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://orcid.org/0000-0001-5325-4934", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ctibor Škuta" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ctibor.skuta@img.cas.cz" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ncit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/colonatlas", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Colorectal Cancer Atlas" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.coloncanceratlas.org" - }, - "https://bioregistry.io/schema/#0000005": "ALA", - "https://bioregistry.io/schema/#0000006": "http://www.coloncanceratlas.org/search_cell_line?cell_line=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.coloncanceratlas.org/search_cell_line?cell_line=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.coloncanceratlas.org/search_cell_line?cell_line=ALA" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "colonatlas" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0127", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/idot", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Identifiers.org Terms" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/co_358" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/idot" + "@id": "https://bioregistry.io/registry/stap" }, { - "@id": "https://registry.identifiers.org/registry/idot" + "@id": "https://bioregistry.io/registry/linguist" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://biomodels.net/vocab/idot.rdf" - }, - "https://bioregistry.io/schema/#0000005": "identifierPattern", - "https://bioregistry.io/schema/#0000006": "https://biomodels.net/vocab/idot.rdf#$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biomodels.net/vocab/idot.rdf#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biomodels.net/vocab/idot.rdf#identifierPattern" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "idot" - } - }, - { - "@id": "https://orcid.org/0000-0003-4752-543X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fahim Imam" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "smtifahim@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/umbbd.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/umbbd.enzyme" + }, { - "@id": "https://bioregistry.io/registry/umbbd" + "@id": "https://bioregistry.io/registry/myco.lepra" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EAWAG Biocatalysis/Biodegradation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/metatlas" + }, { - "@id": "https://registry.identifiers.org/registry/umbbd.reaction" + "@id": "https://bioregistry.io/registry/collagenmutdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION" + "@id": "https://bioregistry.io/registry/dragondb.allele" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID" + "@id": "https://bioregistry.io/registry/yid" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://umbbd.ethz.ch/" - }, - "https://bioregistry.io/schema/#0000005": "r0001", - "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1", - "https://bioregistry.io/schema/#0000008": "^r\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UM-BBD_reactionID" - }, - "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=r0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "umbbd.reaction" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cadsr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0073", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/duo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0002-2801-0767", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dalia Alghamdi" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dal.alghamdi92@gmail.com" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.n66krd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-5889-4463", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mark Engelstad" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "engelsta@ohsu.edu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/eo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1414v8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2796", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/datanator.metabolite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ecyano.entity", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/TIME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-9228-8838", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mark Jensen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mpjensen@buffalo.edu" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/ENVO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/chembank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rfec93", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010880", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/pibase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of structurally defined protein interfaces" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/pibase" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/nrfc" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/mediadive.medium" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://salilab.org/pibase" - }, - "https://bioregistry.io/schema/#0000005": "21692", - "https://bioregistry.io/schema/#0000006": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=21692" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pibase" - } - }, - { - "@id": "https://bioregistry.io/registry/dg.anv0", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anvil" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.anv0" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gen3.theanvil.io" - }, - "https://bioregistry.io/schema/#0000005": "00077f1c-c45a-47ba-8e6c-1bf6b6b43fce", - "https://bioregistry.io/schema/#0000006": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/00077f1c-c45a-47ba-8e6c-1bf6b6b43fce" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dg.anv0" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/dg.6vts", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "JCOIN" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.6vts" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://jcoin.datacommons.io" - }, - "https://bioregistry.io/schema/#0000005": "2afacf00-9a1d-4d80-8c32-69d3923d3913", - "https://bioregistry.io/schema/#0000006": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/2afacf00-9a1d-4d80-8c32-69d3923d3913" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dg.6vts" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/otl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ncim", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/rcb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RIKEN Bioresource Center Cell Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/limore" + }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC" + "@id": "https://bioregistry.io/registry/iclc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/mgi" + }, { - "@value": "genetic material" + "@id": "https://bioregistry.io/registry/iceo" }, { - "@value": "virus" + "@id": "https://bioregistry.io/registry/bcrj" }, { - "@value": "faseb list" + "@id": "https://bioregistry.io/registry/nembase" }, { - "@value": "organ" + "@id": "https://bioregistry.io/registry/rrid" }, { - "@value": "plant" + "@id": "https://bioregistry.io/registry/panther.family" }, { - "@value": "cultured cell" + "@id": "https://bioregistry.io/registry/co_367" }, { - "@value": "experimental plant" + "@id": "https://bioregistry.io/registry/mw.project" }, { - "@value": "seed" + "@id": "https://bioregistry.io/registry/erv" }, { - "@value": "dna" + "@id": "https://bioregistry.io/registry/mirte" }, { - "@value": "recombinant host" + "@id": "https://bioregistry.io/registry/mgnify.proj" }, { - "@value": "animal" + "@id": "https://bioregistry.io/registry/glycomapsdb" }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/google.patent" }, { - "@value": "sperm" + "@id": "https://bioregistry.io/registry/horizon_discovery" }, { - "@value": "cell" + "@id": "https://bioregistry.io/registry/civic.tid" }, { - "@value": "cultured cell line" + "@id": "https://bioregistry.io/registry/co_340" }, { - "@value": "embryo" + "@id": "https://bioregistry.io/registry/covid19" }, { - "@value": "bioresource" + "@id": "https://bioregistry.io/registry/bugbase.expt" }, { - "@value": "experimental animal" + "@id": "https://bioregistry.io/registry/co_337" }, { - "@value": "tissue" + "@id": "https://bioregistry.io/registry/genecards.genenote" }, { - "@value": "cell line" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cell.brc.riken.jp/en/rcb" - }, - "https://bioregistry.io/schema/#0000005": "RCB0002", - "https://bioregistry.io/schema/#0000006": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1", - "https://bioregistry.io/schema/#0000008": "^RCB\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=RCB0002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rcb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dw22y3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/biogrid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/biogrid.interaction" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BioGRID" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioGRID" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/chemidplus" + }, { - "@id": "https://www.uniprot.org/database/DB-0184" + "@id": "https://bioregistry.io/registry/opmi" }, { - "@id": "https://www.re3data.org/repository/r3d100010350" + "@id": "https://bioregistry.io/registry/ubprop" }, { - "@id": "https://fairsharing.org/FAIRsharing.9d5f5r" + "@id": "https://bioregistry.io/registry/sdbs" }, { - "@id": "https://registry.bio2kg.org/resource/biogrid" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID" + "@id": "https://bioregistry.io/registry/plo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid" + "@id": "https://bioregistry.io/registry/noaa.cameo" }, { - "@id": "https://registry.identifiers.org/registry/biogrid" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ihw" + }, { - "@value": "cheminformatics" + "@id": "https://bioregistry.io/registry/cls" }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/prov" }, { - "@value": "systems biology" + "@id": "https://bioregistry.io/registry/fcsfree" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/antibodyregistry" }, { - "@value": "chemical biology" + "@id": "https://bioregistry.io/registry/kegg.ligand" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/registry/oostt" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/cl" }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/registry/pfr" }, { - "@value": "biochemistry" + "@id": "https://bioregistry.io/registry/edam.operation" }, { - "@value": "bioinformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://thebiogrid.org/" - }, - "https://bioregistry.io/schema/#0000005": "31623", - "https://bioregistry.io/schema/#0000006": "http://thebiogrid.org/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9713-9994" - }, - "https://bioregistry.io/schema/#0000024": "http://thebiogrid.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://thebiogrid.org/31623" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biogrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/cmo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clinical measurement ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/frbrer" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo" + "@id": "https://bioregistry.io/registry/cnrs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMO" + "@id": "https://bioregistry.io/registry/ricenetdb.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.dq78pn" + "@id": "https://bioregistry.io/registry/empiar" }, { - "@id": "https://www.obofoundry.org/ontology/cmo" + "@id": "https://bioregistry.io/registry/sibo" }, { - "@id": "http://www.ontobee.org/ontology/CMO" + "@id": "https://bioregistry.io/registry/paxdb.organism" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CMO" + "@id": "https://bioregistry.io/registry/pesticides" }, { - "@id": "http://aber-owl.net/ontology/CMO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bmrb.restraint" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/bioregistry.schema" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/dg.anv0" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/registry/chictr" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/xco" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/rgdweb/ontology/search.html" - }, - "https://bioregistry.io/schema/#0000005": "0001350", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cmo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6443-9376" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CMO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CMO_0001350" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cmo" - } - }, - { - "@id": "https://bioregistry.io/registry/gainesville.core", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gainesville Core Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ontologies.makolab.com/gc06/gc.html" - }, - "https://bioregistry.io/schema/#0000005": "Aromatic", - "https://bioregistry.io/schema/#0000006": "http://purl.org/gc/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://ontologies.makolab.com/gc06/gc.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://purl.org/gc/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/gc/Aromatic" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gainesville.core" - } - }, - { - "@id": "https://bioregistry.io/registry/iso.3166", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An identifier for a country in numeric format per ISO 3166-1", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ISO 3166-1 Country Code" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P299" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.iso.org/iso-3166-country-codes.html" - }, - "https://bioregistry.io/schema/#0000005": "554", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "iso.3166" - } - }, - { - "@id": "https://bioregistry.io/registry/pactr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pan African Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pactr.samrc.ac.za/" - }, - "https://bioregistry.io/schema/#0000005": "PACTR202304525632216", - "https://bioregistry.io/schema/#0000008": "^PACTR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "pactr" - } - }, - { - "@id": "https://orcid.org/0000-0003-3947-488X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sebastien Moretti" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sebastien.moretti@sib.swiss" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/shibase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/nmrshiftdb2", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NMRShiftDB structure" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/co_345" + }, { - "@id": "https://registry.identifiers.org/registry/nmrshiftdb2" + "@id": "https://bioregistry.io/registry/confident.series" }, { - "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N" + "@id": "https://bioregistry.io/registry/vcell" }, { - "@id": "http://www.wikidata.org/entity/P9405" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "analytical chemistry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nmrshiftdb.nmr.uni-koeln.de" - }, - "https://bioregistry.io/schema/#0000005": "234", - "https://bioregistry.io/schema/#0000006": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5990-4157" - }, - "https://bioregistry.io/schema/#0000024": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/234" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nmrshiftdb2" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/poro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3da56b", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/neurovault.collection", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroVault Collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/kaggle" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection" + "@id": "https://bioregistry.io/registry/reo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION" + "@id": "https://bioregistry.io/registry/pfam.clan" }, { - "@id": "https://registry.identifiers.org/registry/neurovault.collection" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neurovault.org" - }, - "https://bioregistry.io/schema/#0000005": "3304", - "https://bioregistry.io/schema/#0000006": "https://neurovault.org/collections/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://neurovault.org/collections/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://neurovault.org/collections/3304" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "neurovault.collection" - } - }, - { - "@id": "https://registry.identifiers.org/registry/jcggdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/sh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A language for validating RDF graphs against a set of conditions", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/w3c/data-shapes" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Shapes Constraint Language" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.f1449d" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/4dn.replicate" + }, { - "@value": "knowledge and information systems" + "@id": "https://bioregistry.io/registry/google.book" }, { - "@value": "ontology and terminology" + "@id": "https://bioregistry.io/registry/panorama" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/siren" }, { - "@value": "informatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/shacl/" - }, - "https://bioregistry.io/schema/#0000005": "NodeShape", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/shacl#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://triplydb.com/w3c/sh/download.trig.gz" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3884-3420" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "shacl" - }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/shacl#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/shacl#NodeShape" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sh" - } - }, - { - "@id": "https://bioregistry.io/registry/phosphosite.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhosphoSite Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/vmc" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN" + "@id": "https://bioregistry.io/registry/mlc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein" + "@id": "https://bioregistry.io/registry/miapa" }, { - "@id": "https://registry.identifiers.org/registry/phosphosite.protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.phosphosite.org/homeAction.do" - }, - "https://bioregistry.io/schema/#0000005": "12300", - "https://bioregistry.io/schema/#0000006": "http://www.phosphosite.org/proteinAction.do?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.phosphosite.org/proteinAction.do?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.phosphosite.org/proteinAction.do?id=12300" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phosphosite.protein" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "http://www.wikidata.org/entity/P5270", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t31wcb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bbtp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TADS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000012", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "is deprecated" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#boolean" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/eco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/s_mart_db", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The S/MAR transaction DataBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/s_mart_db" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://smartdb.bioinf.med.uni-goettingen.de/" - }, - "https://bioregistry.io/schema/#0000005": "SM0000020", - "https://bioregistry.io/schema/#0000006": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?SM0000020" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "s_mart_db" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/homologene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011330", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://www.wikidata.org/entity/P305", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.yecp83", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/MIRNAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/CTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "http://aber-owl.net/ontology/EMAPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/massbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P595", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/iceberg.element", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/minid.test" + }, { - "@id": "https://bioregistry.io/registry/iceberg" + "@id": "https://bioregistry.io/registry/idr" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ICEberg integrative and conjugative element" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/merops.family" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element" + "@id": "https://bioregistry.io/registry/miriam.collection" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT" + "@id": "https://bioregistry.io/registry/github.pull" }, { - "@id": "https://registry.identifiers.org/registry/iceberg.element" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=alpha&alpha=100" - }, - "https://bioregistry.io/schema/#0000005": "100", - "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "iceberg.ice" - }, - "https://bioregistry.io/schema/#0000024": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=100" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iceberg.element" - } - }, - { - "@id": "http://aber-owl.net/ontology/GALEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://www.ontobee.org/ontology/HsapDv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/doi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/string", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/epio", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/chiro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/chiro" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChEBI Integrated Role Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/phosphosite.protein" + }, { - "@id": "http://aber-owl.net/ontology/CHIRO" + "@id": "https://bioregistry.io/registry/cath.domain" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro" + "@id": "https://bioregistry.io/registry/bila" }, { - "@id": "https://www.obofoundry.org/ontology/chiro" + "@id": "https://bioregistry.io/registry/aao" }, { - "@id": "http://www.ontobee.org/ontology/CHIRO" + "@id": "https://bioregistry.io/registry/wikipedia.en" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHIRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/aphidbase.transcript" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/aop.events" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/chiro" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHIRO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/chiro.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/registry/rbo" + }, { - "@id": "https://bioregistry.io/registry/pr" + "@id": "https://bioregistry.io/registry/psipar" }, { - "@id": "https://bioregistry.io/registry/hp" + "@id": "https://bioregistry.io/registry/umbbd.reaction" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/registry/hcpcs" }, { - "@id": "https://bioregistry.io/registry/mp" + "@id": "https://bioregistry.io/registry/ohpi" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://bioregistry.io/registry/pspub" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/dg.6vts" }, { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5208-3432" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHIRO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "chiro" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bacdive", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.resource", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/hpa" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/registry/nextprot" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Resource" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/database/" - }, - "https://bioregistry.io/schema/#0000005": "DB-0174", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/database/$1", - "https://bioregistry.io/schema/#0000008": "^DB-\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/registry/rhea" + }, { - "@value": "uniprot.db" + "@id": "https://bioregistry.io/registry/pubchem.compound" }, { - "@value": "uniprot.database" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/database/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/database/DB-0174" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.resource" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/TXPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/xco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fcwyhz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/myco.marinum", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_338", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/opb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-8380-5247", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Elspeth Bruford" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "elspeth@genenames.org" - } - }, - { - "@id": "https://bioregistry.io/registry/eu89h", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "JRC Data Catalogue" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/sasap" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H" + "@id": "https://bioregistry.io/registry/ecogene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h" + "@id": "https://bioregistry.io/registry/mirnest" }, { - "@id": "https://registry.identifiers.org/registry/eu89h" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://data.jrc.ec.europa.eu/" - }, - "https://bioregistry.io/schema/#0000005": "jrc-eurl-ecvam-chemagora", - "https://bioregistry.io/schema/#0000006": "http://data.europa.eu/89h/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\-_]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://data.europa.eu/89h/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://data.europa.eu/89h/jrc-eurl-ecvam-chemagora" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "eu89h" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/covoc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/covoc" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CoVoc Coronavirus Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EBISPOT/covoc" - }, - "https://bioregistry.io/schema/#0000005": "0010034", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COVOC_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/EBISPOT/covoc/releases/download/current/covoc.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4071-8397" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COVOC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/COVOC_0010034" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "covoc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/insdc.gca", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genome assembly database - INSDC accessions" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/re3data" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca" + "@id": "https://bioregistry.io/registry/icd10pcs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA" + "@id": "https://bioregistry.io/registry/pmr.workspace" }, { - "@id": "https://registry.identifiers.org/registry/insdc.gca" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/ena/browse/genome-assembly-database" - }, - "https://bioregistry.io/schema/#0000005": "GCA_000155495.1", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/data/view/$1", - "https://bioregistry.io/schema/#0000008": "^GCA_[0-9]{9}(\\.[0-9]+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/ncbi.assembly" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/data/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ena/data/view/GCA_000155495.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "insdc.gca" - } - }, - { - "@id": "http://www.ontobee.org/ontology/RXNO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://orcid.org/0000-0001-8646-5463", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Laia Subirats" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "laia.subirats@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/matrixdb.association", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MatrixDB Association" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/homd.taxon" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION" + "@id": "https://bioregistry.io/registry/co_356" }, { - "@id": "https://registry.identifiers.org/registry/matrixdb.association" + "@id": "https://bioregistry.io/registry/lotus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://matrixdb.univ-lyon1.fr/" - }, - "https://bioregistry.io/schema/#0000005": "P00747__P07355", - "https://bioregistry.io/schema/#0000006": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/matrixdb.association:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=P00747__P07355&class=Association" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "matrixdb.association" - } - }, - { - "@id": "https://orcid.org/0000-0002-8719-7760", - "http://purl.org/dc/terms/contributor": [ + "@id": "https://bioregistry.io/registry/sabiork.kineticrecord" + }, { - "@id": "https://bioregistry.io/registry/ncats.bioplanet" + "@id": "https://bioregistry.io/registry/propreo" }, { - "@id": "https://bioregistry.io/registry/cpt" + "@id": "https://bioregistry.io/registry/sdis" }, { - "@id": "https://bioregistry.io/registry/ddinter.drug" + "@id": "https://bioregistry.io/registry/ecso" }, { - "@id": "https://bioregistry.io/registry/agrkb" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sierra Moxon" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2057", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/asap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A Systematic Annotation Package for Community Analysis of Genomes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/wikipathways.vocab" + }, { - "@id": "https://fairsharing.org/FAIRsharing.anpa6" + "@id": "https://bioregistry.io/registry/miriam.resource" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP" + "@id": "https://bioregistry.io/registry/linkml" }, { - "@id": "https://registry.bio2kg.org/resource/asap" + "@id": "https://bioregistry.io/registry/mzspec" }, { - "@id": "https://www.re3data.org/repository/r3d100010666" + "@id": "https://bioregistry.io/registry/cvdo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap" + "@id": "https://bioregistry.io/registry/nsf.award" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP" + "@id": "https://bioregistry.io/registry/viaf" }, { - "@id": "https://registry.identifiers.org/registry/asap" + "@id": "https://bioregistry.io/registry/reproduceme" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/epso" + }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/registry/atcc" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/proglyc" }, { - "@value": "comparative genomics" + "@id": "https://bioregistry.io/registry/cmo" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@value": "developmental biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://asap.ahabs.wisc.edu/asap/home.php" - }, - "https://bioregistry.io/schema/#0000005": "ABE-0009634", - "https://bioregistry.io/schema/#0000006": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=ABE-0009634" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "asap" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/skosxl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simple Knowledge Organization System eXtension for Labels" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/funcbase.human" + }, { - "@value": "skos" + "@id": "https://bioregistry.io/registry/mfo" }, { - "@value": "semantic web" + "@id": "https://bioregistry.io/registry/sharkipedia.trait" }, { - "@value": "metadata" + "@id": "https://bioregistry.io/registry/ucsc" }, { - "@value": "data model" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/2008/05/skos-xl#" - }, - "https://bioregistry.io/schema/#0000005": "literalForm", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2008/05/skos-xl#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2008/05/skos-xl#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2008/05/skos-xl#literalForm" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "skosxl" - } - }, - { - "@id": "https://bioregistry.io/registry/pgdso", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Growth and Development Stage" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/xmetdb" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO" + "@id": "https://bioregistry.io/registry/commoncoreontology" }, { - "@id": "https://www.obofoundry.org/ontology/pgdso" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/biogrid" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/affy.probeset" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.plantontology.org" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PGDSO_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N040aa6c5b3974c7da6cda302541b8bb3" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PGDSO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "pgdso" - } - }, - { - "@id": "_:N040aa6c5b3974c7da6cda302541b8bb3", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Ontology Administrators" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "po-discuss@plantontology.org" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/innatedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rycy2x", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/goa", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Annotation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/civic.vgid" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa" + "@id": "https://bioregistry.io/registry/pdb.ligand" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA" + "@id": "https://bioregistry.io/registry/mixs" }, { - "@id": "https://registry.bio2kg.org/resource/goa" + "@id": "https://bioregistry.io/registry/kegg.glycan" }, { - "@id": "https://registry.identifiers.org/registry/goa" + "@id": "https://bioregistry.io/registry/imotdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOA" + "@id": "https://bioregistry.io/registry/apaonto" }, { - "@id": "https://fairsharing.org/FAIRsharing.7zffgc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/biolink" + }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/yrcpdr" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/vsmo" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/sep" }, { - "@value": "biology" + "@id": "https://bioregistry.io/registry/mod" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/GOA/" - }, - "https://bioregistry.io/schema/#0000005": "P12345", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1", - "https://bioregistry.io/schema/#0000008": "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=P12345" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "goa" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4gm9gt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ONE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/graingenes.symbol", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database for Triticeae and Avena gene symbols.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GrainGenes" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://wheat.pw.usda.gov" - }, - "https://bioregistry.io/schema/#0000005": "1-FEH+w3", - "https://bioregistry.io/schema/#0000006": "http://wheat.pw.usda.gov/report?class=gene;name=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://wheat.pw.usda.gov/report?class=gene;name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://wheat.pw.usda.gov/report?class=gene;name=1-FEH+w3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "graingenes.symbol" - } - }, - { - "@id": "https://bioregistry.io/registry/asrp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Arabidopsis Small RNA Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/asrp" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/bams" + }, { - "@value": "rna" + "@id": "https://bioregistry.io/registry/inhand" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/scop.sccs" }, { - "@value": "regulation" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://asrp.danforthcenter.org/" - }, - "https://bioregistry.io/schema/#0000005": "ASRP1423", - "https://bioregistry.io/schema/#0000006": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=ASRP1423" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "asrp" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FBbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1925", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/rnamod", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive listing of post-transcriptionally modified nucleosides from RNA -", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The RNA Modification Database" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/antweb" + }, { - "@value": "structural bioinformatcs" + "@id": "https://bioregistry.io/registry/rbk" }, { - "@value": "rna" + "@id": "https://bioregistry.io/registry/adms" }, { - "@value": "post-transcriptional modification" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rna.rega.kuleuven.be/rnamods/" - }, - "https://bioregistry.io/schema/#0000005": "051", - "https://bioregistry.io/schema/#0000006": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1", - "https://bioregistry.io/schema/#0000008": "^\\d{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?051" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rnamod" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/nmrshiftdb2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/genepio", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8697", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OVAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y1mmbv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/nfdi4chem.osmo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for simulation, modelling, and optimization" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://zenodo.org/record/5237774#.YXq72hxCRGo" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "nfdi4chem.osmo" - } - }, - { - "@id": "https://bioregistry.io/registry/icf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Functioning, Disability and Health" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/mesh.vocab" + }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254" + "@id": "https://bioregistry.io/registry/plana" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICF" + "@id": "https://bioregistry.io/registry/zeco" }, { - "@id": "http://aber-owl.net/ontology/ICF" + "@id": "https://bioregistry.io/registry/mgnify.samp" }, { - "@id": "https://fairsharing.org/FAIRsharing.7rngj0" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/afo" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/pypi" }, { - "@value": "health science" + "@id": "https://bioregistry.io/registry/bioproject" }, { - "@value": "primary health care" + "@id": "https://bioregistry.io/registry/emolecules" }, { - "@value": "medicine" + "@id": "https://bioregistry.io/registry/tngb" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icd.who.int/dev11/l-icf/en" - }, - "https://bioregistry.io/schema/#0000005": "326705068", - "https://bioregistry.io/schema/#0000006": "http://id.who.int/icd/entity/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ICF/3/icf.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb3677b93e9364253a0a9a9c51e4ac0c6" - }, - "https://bioregistry.io/schema/#0000024": "http://id.who.int/icd/entity/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://id.who.int/icd/entity/326705068" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "icf" - } - }, - { - "@id": "_:Nb3677b93e9364253a0a9a9c51e4ac0c6", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The World Health Organization" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "info@who.int" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/spike", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0001-7203-8399", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sergio José Rodríguez Méndez" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "srodriguez142857@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/gateway", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Data Research Innovation Gateway" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/gateway" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hdruk.ac.uk" - }, - "https://bioregistry.io/schema/#0000005": "fd8d0743-344a-4758-bb97-f8ad84a37357", - "https://bioregistry.io/schema/#0000006": "https://web.www.healthdatagateway.org/dataset/$1", - "https://bioregistry.io/schema/#0000008": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://web.www.healthdatagateway.org/dataset/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://web.www.healthdatagateway.org/dataset/fd8d0743-344a-4758-bb97-f8ad84a37357" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gateway" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ev", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eVOC (Expressed Sequence Annotation for Humans)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/hp" + }, { - "@id": "https://www.obofoundry.org/ontology/ev" + "@id": "https://bioregistry.io/registry/atcvet" }, { - "@id": "https://registry.bio2kg.org/resource/evoc" + "@id": "https://bioregistry.io/registry/uniprot.arba" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EV" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/gramene.taxonomy" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/ucum" }, { - "@value": "development" + "@id": "https://bioregistry.io/registry/tsc" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/hogenom" }, { - "@value": "cell" + "@id": "https://bioregistry.io/registry/nasc" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/trichdb" }, { - "@value": "experiment" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.evocontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "EV_0100011", - "https://bioregistry.io/schema/#0000006": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/cl" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nea597ba9607343dfad7d0285b1773c07" - }, - "https://bioregistry.io/schema/#0000024": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=EV_0100011" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ev" - } - }, - { - "@id": "_:Nea597ba9607343dfad7d0285b1773c07", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eVOC mailing list" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "evoc@sanbi.ac.za" - } - }, - { - "@id": "http://aber-owl.net/ontology/IDO-COVID-19", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/jaxmice", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/vbase2", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/dmba" + }, { - "@id": "https://fairsharing.org/FAIRsharing.qvxhb1" + "@id": "https://bioregistry.io/registry/ecyano.experiment" }, { - "@id": "https://registry.identifiers.org/registry/vbase2" + "@id": "https://bioregistry.io/registry/pao" }, { - "@id": "https://registry.bio2kg.org/resource/vbase2" + "@id": "https://bioregistry.io/registry/lbctr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2" + "@id": "https://bioregistry.io/registry/alfred" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2" + "@id": "https://bioregistry.io/registry/funcbase.fly" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/colonatlas" + }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/biolegend" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.vbase2.org/vbase2.php" - }, - "https://bioregistry.io/schema/#0000005": "humIGHV025", - "https://bioregistry.io/schema/#0000006": "http://www.vbase2.org/vgene.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1297-9725" - }, - "https://bioregistry.io/schema/#0000024": "http://www.vbase2.org/vgene.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.vbase2.org/vgene.php?id=humIGHV025" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vbase2" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mw.study", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ark", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/pharmacodb.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmacoDB Cells" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pharmacodb.ca/cell_lines" - }, - "https://bioregistry.io/schema/#0000005": "22RV1_12_2019", - "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/cell_lines/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/cell_lines/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pharmacodb.ca/cell_lines/22RV1_12_2019" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmacodb.cell" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/registry/eggnog", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eggNOG" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/grsdb" + }, { - "@id": "https://www.uniprot.org/database/DB-0152" + "@id": "https://bioregistry.io/registry/co_331" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog" + "@id": "https://bioregistry.io/registry/compulyeast" }, { - "@id": "https://registry.bio2kg.org/resource/eggnog" + "@id": "https://bioregistry.io/registry/ma" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG" + "@id": "https://bioregistry.io/registry/fyeco" }, { - "@id": "https://registry.identifiers.org/registry/eggnog" + "@id": "https://bioregistry.io/registry/imgt.primerdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.j1wj7d" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/pr" + }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/pubchem.cell" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://eggnog.embl.de/version_3.0/" - }, - "https://bioregistry.io/schema/#0000005": "veNOG12876", - "https://bioregistry.io/schema/#0000006": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=veNOG12876" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "eggnog" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ornaseq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://aber-owl.net/ontology/VSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100014165", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7zxrs6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://edamontology.org/data_2669", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.36pf8q", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/pathoplant", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PathoPlant®" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/pathoplant" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/merops.entry" + }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/registry/ena.embl" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/omim.ps" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/registry/ehdaa2" }, { - "@value": "pathway" + "@id": "https://bioregistry.io/registry/peff" }, { - "@value": "small molecule" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pathoplant.de" - }, - "https://bioregistry.io/schema/#0000005": "MO000027", - "https://bioregistry.io/schema/#0000006": "http://www.pathoplant.de/detail.php?accNo=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.pathoplant.de/detail.php?accNo=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pathoplant.de/detail.php?accNo=MO000027" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pathoplant" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TADS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/swissregulon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.amcv1e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g0c5qn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/exac.variant", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ZECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/EFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mmp.ref", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000021", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The reviewer of a prefix" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has reviewer" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000020" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/sep", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sample processing and separation techniques" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/smart" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEP" + "@id": "https://bioregistry.io/registry/mirtarbase" }, { - "@id": "http://aber-owl.net/ontology/SEP" + "@id": "https://bioregistry.io/registry/emapa" }, { - "@id": "https://registry.bio2kg.org/resource/sep" + "@id": "https://bioregistry.io/registry/molmovdb" }, { - "@id": "https://www.obofoundry.org/ontology/sep" + "@id": "https://bioregistry.io/registry/neurondb" }, { - "@id": "http://www.ontobee.org/ontology/SEP" + "@id": "https://bioregistry.io/registry/agrkb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SEP" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/gorel" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/biosystems" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/mao" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://psidev.info/sepcv" - }, - "https://bioregistry.io/schema/#0000005": "00073", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SEP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5,6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/sep.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N0ae28fac82dc472a8eae124a719e75e4" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SEP_", - "https://bioregistry.io/schema/#0000029": { - "@value": "sep" - } - }, - { - "@id": "_:N0ae28fac82dc472a8eae124a719e75e4", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SEP developers via the PSI and MSI mailing lists" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "psidev-gps-dev@lists.sourceforge.net" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CPT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/splash", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Spectra Hash Code" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/cellimage" + }, { - "@id": "https://registry.identifiers.org/registry/splash" + "@id": "https://bioregistry.io/registry/hba" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash" + "@id": "https://bioregistry.io/registry/vipr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mona.fiehnlab.ucdavis.edu/" - }, - "https://bioregistry.io/schema/#0000005": "splash10-0zq2000000-77302b0326a418630a84", - "https://bioregistry.io/schema/#0000006": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1", - "https://bioregistry.io/schema/#0000008": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/splash10-0zq2000000-77302b0326a418630a84" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "splash" - } - }, - { - "@id": "https://bioregistry.io/registry/kaggle", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kaggle" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/chembank" + }, { - "@id": "https://www.re3data.org/repository/r3d100012705" + "@id": "https://bioregistry.io/registry/ised" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle" + "@id": "https://bioregistry.io/registry/codelink" }, { - "@id": "https://registry.identifiers.org/registry/kaggle" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://kaggle.com" - }, - "https://bioregistry.io/schema/#0000005": "nasa/kepler-exoplanet-search-results", - "https://bioregistry.io/schema/#0000006": "https://www.kaggle.com/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.kaggle.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kaggle.com/nasa/kepler-exoplanet-search-results" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kaggle" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000024", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has URI prefix" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ + "@id": "https://bioregistry.io/registry/jcggdb" + }, { - "@id": "http://purl.org/vocab/vann/preferredNamespaceUri" + "@id": "https://bioregistry.io/registry/matrixdb" }, { - "@id": "http://www.w3.org/ns/shacl#namespace" + "@id": "https://bioregistry.io/registry/img.gene" }, { - "@id": "http://rdfs.org/ns/void#uriSpace" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/oma.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OMA Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/tarbase" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN" + "@id": "https://bioregistry.io/registry/exac.transcript" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein" + "@id": "https://bioregistry.io/registry/langual" }, { - "@id": "https://registry.identifiers.org/registry/oma.protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://omabrowser.org/cgi-bin/gateway.pl" - }, - "https://bioregistry.io/schema/#0000005": "HUMAN16963", - "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{5}\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=HUMAN16963" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oma.protein" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0001-8815-0078", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ramona Walls" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rlwalls2008@gmail.com" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bartoc.org/en/node/181", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://registry.identifiers.org/registry/fb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3098", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/rnamods", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNA Modification Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/zinc" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS" + "@id": "https://bioregistry.io/registry/dg.4dfc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods" + "@id": "https://bioregistry.io/registry/abcd" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods" + "@id": "https://bioregistry.io/registry/mipmod" }, { - "@id": "https://registry.identifiers.org/registry/rnamods" + "@id": "https://bioregistry.io/registry/ximbio" }, { - "@id": "https://registry.bio2kg.org/resource/rnamods" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/fbdv" + }, { - "@value": "rna" + "@id": "https://bioregistry.io/registry/nif.grossanatomy" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rna-mdb.cas.albany.edu/RNAmods/rnaover.htm" - }, - "https://bioregistry.io/schema/#0000005": "101", - "https://bioregistry.io/schema/#0000006": "http://mods.rna.albany.edu/mods/modifications/view/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://mods.rna.albany.edu/mods/modifications/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://mods.rna.albany.edu/mods/modifications/view/101" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rnamods" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/alfred", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/snp500cancer", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1421", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/hancestro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0003-1633-8607", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael Riffle" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mriffle@u.washington.edu" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/ucum", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ucum-org/ucum" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unified Code for Units of Measure" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/mmsl" + }, { - "@id": "https://fairsharing.org/FAIRsharing.27w8k0" + "@id": "https://bioregistry.io/registry/pharmacodb.tissue" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8" + "@id": "https://bioregistry.io/registry/niaid.chemdb" }, { - "@id": "https://bartoc.org/en/node/1895" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ucum.org" - }, - "https://bioregistry.io/schema/#0000005": "aBq", - "https://bioregistry.io/schema/#0000006": "https://units-of-measurement.org/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3884-3420" - }, - "https://bioregistry.io/schema/#0000024": "https://units-of-measurement.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://units-of-measurement.org/aBq" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ucum" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_365", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0156", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/rrrc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Resource and Research Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ncro" + }, { - "@value": "gamete" + "@id": "https://bioregistry.io/registry/kegg.dgroup" }, { - "@value": "infectious" + "@id": "https://bioregistry.io/registry/edam.format" }, { - "@value": "cryopreserved" + "@id": "https://bioregistry.io/registry/charprot" }, { - "@value": "catalog" + "@id": "https://bioregistry.io/registry/bold.taxonomy" }, { - "@value": "molecular" + "@id": "https://bioregistry.io/registry/icf" }, { - "@value": "strain" + "@id": "https://bioregistry.io/registry/exac.variant" }, { - "@value": "hybrid" + "@id": "https://bioregistry.io/registry/ocid" }, { - "@value": "germplasma" + "@id": "https://bioregistry.io/registry/fairsharing.organization" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/tto" }, { - "@value": "database" + "@id": "https://bioregistry.io/registry/metacyc.reaction" }, { - "@value": "animal" + "@id": "https://bioregistry.io/registry/dggr" }, { - "@value": "pathogen" + "@id": "https://bioregistry.io/registry/neurovault.image" }, { - "@value": "reagent" + "@id": "https://bioregistry.io/registry/ricecyc" }, { - "@value": "embryonic stem cell" + "@id": "https://bioregistry.io/registry/oma.grp" }, { - "@value": "mutant" + "@id": "https://bioregistry.io/registry/foodb.food" }, { - "@value": "ovarian" + "@id": "https://bioregistry.io/registry/doqcs.pathway" }, { - "@value": "human" + "@id": "https://bioregistry.io/registry/tahe" }, { - "@value": "stem cell" + "@id": "https://bioregistry.io/registry/bao" }, { - "@value": "disease" + "@id": "https://bioregistry.io/registry/ctd.disease" }, { - "@value": "protocol" + "@id": "https://bioregistry.io/registry/phosphopoint.protein" }, { - "@value": "rat" + "@id": "https://bioregistry.io/registry/nlx.cell" }, { - "@value": "drug" + "@id": "https://bioregistry.io/registry/validatordb" }, { - "@value": "embryo" + "@id": "https://bioregistry.io/registry/apo" }, { - "@value": "cell line" + "@id": "https://bioregistry.io/registry/snap" }, { - "@value": "nuclear" + "@id": "https://bioregistry.io/registry/pubchem.bioassay" }, { - "@value": "biomedical" + "@id": "https://bioregistry.io/registry/rebase" }, { - "@value": "tissue" + "@id": "https://bioregistry.io/registry/facebase" }, { - "@value": "rat model" + "@id": "https://bioregistry.io/registry/ga4ghdos" }, { - "@value": "genotyping" + "@id": "https://bioregistry.io/registry/github.issue" }, { - "@value": "research" + "@id": "https://bioregistry.io/registry/bioregistry" }, { - "@value": "inbred" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.rrrc.us/" - }, - "https://bioregistry.io/schema/#0000005": "961", - "https://bioregistry.io/schema/#0000006": "https://www.rrrc.us/Strain/?x=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.rrrc.us/Strain/?x=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.rrrc.us/Strain/?x=961" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rrrc" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/dideo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_321", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HOM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/publons.publication", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Publons publication" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P3431" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://publons.com" - }, - "https://bioregistry.io/schema/#0000005": "507568", - "https://bioregistry.io/schema/#0000006": "https://publons.com/publon/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://publons.com/publon/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://publons.com/publon/507568" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "publons.publication" - } - }, - { - "@id": "https://bioregistry.io/registry/scretf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ScerTF" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/vfb" + }, { - "@id": "https://registry.identifiers.org/registry/scretf" + "@id": "https://bioregistry.io/registry/dron" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf" + "@id": "https://bioregistry.io/registry/arrayexpress.platform" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://stormo.wustl.edu/ScerTF/" - }, - "https://bioregistry.io/schema/#0000005": "RSC3", - "https://bioregistry.io/schema/#0000006": "http://stormo.wustl.edu/ScerTF/details/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://stormo.wustl.edu/ScerTF/details/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://stormo.wustl.edu/ScerTF/details/RSC3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scretf" - } - }, - { - "@id": "https://bioregistry.io/registry/araport", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Website with general information about Arabidopsis and functionalities such as a genomic viewer", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Arabidopsis Information Portal" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/massbank" + }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport" + "@id": "https://bioregistry.io/registry/hdr" }, { - "@id": "https://registry.identifiers.org/registry/tair.name" + "@id": "https://bioregistry.io/registry/goa" }, { - "@id": "https://www.uniprot.org/database/DB-0221" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.araport.org/" - }, - "https://bioregistry.io/schema/#0000005": "AT5G05330", - "https://bioregistry.io/schema/#0000006": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1", - "https://bioregistry.io/schema/#0000008": "^AT.G[0-9]{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G05330" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "araport" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ATwSZG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/spp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ukprn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for an educational organization issued by the UK Register of Learning Providers", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UK Provider Reference Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P4971" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ukrlp.co.uk" - }, - "https://bioregistry.io/schema/#0000005": "10007835", - "https://bioregistry.io/schema/#0000006": "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ukprns" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ukprn:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=10007835&pv_status=VERIFIED&pv_vis_code=L" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ukprn" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/genbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_2659", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/doi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Digital Object Identifier System is for identifying content objects in the digital environment.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Digital Object Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/ucas" + }, { - "@id": "https://fairsharing.org/FAIRsharing.hFLKCn" + "@id": "https://bioregistry.io/registry/geno" }, { - "@id": "http://www.wikidata.org/entity/P356" + "@id": "https://bioregistry.io/registry/ogms" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI" + "@id": "https://bioregistry.io/registry/ensembl.metazoa" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI" + "@id": "https://bioregistry.io/registry/bcrc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi" + "@id": "https://bioregistry.io/registry/gramene.qtl" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOI" + "@id": "https://bioregistry.io/registry/hpm.protein" }, { - "@id": "https://registry.identifiers.org/registry/doi" + "@id": "https://bioregistry.io/registry/corum" }, { - "@id": "http://edamontology.org/data_1188" + "@id": "https://bioregistry.io/registry/cba" }, { - "@id": "https://registry.bio2kg.org/resource/doi" + "@id": "https://bioregistry.io/registry/uniprot.proteome" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/receptome.family" + }, { - "@value": "bibliography" + "@id": "https://bioregistry.io/registry/co_323" }, { - "@value": "knowledge and information systems" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.doi.org/" - }, - "https://bioregistry.io/schema/#0000005": "10.1038/s41597-022-01807-3", - "https://bioregistry.io/schema/#0000006": "https://doi.org/$1", - "https://bioregistry.io/schema/#0000008": "^10.\\d{2,9}/.*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://doi.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://doi.org/10.1038/s41597-022-01807-3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "doi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/topdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/registry/ma", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse adult gross anatomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/gtex" + }, { - "@id": "http://aber-owl.net/ontology/MA" + "@id": "https://bioregistry.io/registry/icldb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MA" + "@id": "https://bioregistry.io/registry/ndex" }, { - "@id": "http://www.ontobee.org/ontology/MA" + "@id": "https://bioregistry.io/registry/vo" }, { - "@id": "https://registry.identifiers.org/registry/ma" + "@id": "https://bioregistry.io/registry/uniprot.isoform" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma" + "@id": "https://bioregistry.io/registry/biosimulations" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MA" + "@id": "https://bioregistry.io/registry/ubio.namebank" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MA" + "@id": "https://bioregistry.io/registry/mp" }, { - "@id": "https://registry.bio2kg.org/resource/ma" + "@id": "https://bioregistry.io/registry/ecolexicon" }, { - "@id": "https://www.obofoundry.org/ontology/ma" + "@id": "https://bioregistry.io/registry/esldb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma" + "@id": "https://bioregistry.io/registry/hsapdv" }, { - "@id": "https://fairsharing.org/FAIRsharing.pdwqcr" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/dcterms" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/inn" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/uminctr" }, { - "@value": "mouse" + "@id": "https://bioregistry.io/registry/asrp" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0002502", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ma.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0956-8634" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MA_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MA_0002502" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ma" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_348", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/co_323", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICARDA - TDv5 - Sept 2018", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Barley ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/inaturalist.place" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323" + "@id": "https://bioregistry.io/registry/decipher" }, { - "@id": "https://cropontology.org/ontology/CO_323" + "@id": "https://bioregistry.io/registry/ovae" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_323" + "@id": "https://bioregistry.io/registry/mesh.2013" }, { - "@id": "https://fairsharing.org/FAIRsharing.f69084" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/cog" + }, { - "@value": "agriculture" + "@id": "https://bioregistry.io/registry/glycoepitope" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/proteomicsdb.protein" }, { - "@value": "botany" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_323/Barley" - }, - "https://bioregistry.io/schema/#0000005": "0000252", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_323:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_323/Barley/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N5b264322e16445358ec3793e74d2c953" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_323:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_323:0000252" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_323" - } - }, - { - "@id": "_:N5b264322e16445358ec3793e74d2c953", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ramesh Verna" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hpm.peptide", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-0294-5484", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Mendez Lopez" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dmendez@ebi.ac.uk" - } - }, - { - "@id": "http://aber-owl.net/ontology/ZECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.orthology", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0224", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.identifiers.org/registry/crisprdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/cba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chinese Biological Abstracts" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "bibliography" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cba.ac.cn" - }, - "https://bioregistry.io/schema/#0000005": "375364", - "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/CBA/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/CBA/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://europepmc.org/article/CBA/375364" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cba" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/pw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ecyano.model", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "E-cyanobacterium model" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model" + "@id": "https://bioregistry.io/registry/civic.vid" }, { - "@id": "https://registry.identifiers.org/registry/ecyano.model" + "@id": "https://bioregistry.io/registry/loggerhead" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://e-cyanobacterium.org/models/" - }, - "https://bioregistry.io/schema/#0000005": "26", - "https://bioregistry.io/schema/#0000006": "https://e-cyanobacterium.org/models/model/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://e-cyanobacterium.org/models/model/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://e-cyanobacterium.org/models/model/26" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecyano.model" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DCM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/oryzabase.mutant", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryzabase Mutant" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant" + "@id": "https://bioregistry.io/registry/sepio" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT" + "@id": "https://bioregistry.io/registry/foaf" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.mutant" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" - }, - "https://bioregistry.io/schema/#0000005": "21393", - "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/21393" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oryzabase.mutant" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dbgap", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/homologene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HomoloGene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/homologene" + "@id": "https://bioregistry.io/registry/ccdc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene" + "@id": "https://bioregistry.io/registry/kegg.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.mzc066" + "@id": "https://bioregistry.io/registry/clyh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE" + "@id": "https://bioregistry.io/registry/pmdb" }, { - "@id": "https://registry.identifiers.org/registry/homologene" + "@id": "https://bioregistry.io/registry/hl7.v2codesystem" }, { - "@id": "http://www.wikidata.org/entity/P593" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "https://bioregistry.io/registry/sugarbind" }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/hao" }, { - "@value": "gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/homologene/" - }, - "https://bioregistry.io/schema/#0000005": "1000", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/homologene/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/homologene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/homologene/1000" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "homologene" - } - }, - { - "@id": "https://orcid.org/0000-0003-4727-9435", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michel Dumontier" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "michel.dumontier@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/mw.project", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolomics Workbench Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/mw.project" + "@id": "https://bioregistry.io/registry/omrse" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT" + "@id": "https://bioregistry.io/registry/drduke" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.metabolomicsworkbench.org/" - }, - "https://bioregistry.io/schema/#0000005": "PR000001", - "https://bioregistry.io/schema/#0000006": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1", - "https://bioregistry.io/schema/#0000008": "^PR[0-9]{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=PR000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mw.project" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/cmf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ccd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ecacc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Collection of Authenticated Cell Culture" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.phe-culturecollections.org.uk/collections/ecacc.aspx" - }, - "https://bioregistry.io/schema/#0000005": "90062901", - "https://bioregistry.io/schema/#0000006": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=90062901" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecacc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/bcbc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Beta Cell Biology Consortium" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "cell line" + "@id": "https://bioregistry.io/registry/lipidmaps" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/registry/kyinno" }, { - "@value": "pancreatic development" + "@id": "https://bioregistry.io/registry/gdsc" }, { - "@value": "pancreatic islet function" + "@id": "https://bioregistry.io/registry/google.scholar" }, { - "@value": "mouse" + "@id": "https://bioregistry.io/registry/nif.cell" }, { - "@value": "data set" + "@id": "https://bioregistry.io/registry/ideal" }, { - "@value": "data sharing" + "@id": "https://bioregistry.io/registry/metanetx.chemical" }, { - "@value": "cell regeneration" + "@id": "https://bioregistry.io/registry/csp" }, { - "@value": "beta cell" + "@id": "https://bioregistry.io/registry/agrovoc" }, { - "@value": "functional genomics" + "@id": "https://bioregistry.io/registry/srao" }, { - "@value": "antibody" + "@id": "https://bioregistry.io/registry/togovar" }, { - "@value": "pancreatic islet" + "@id": "https://bioregistry.io/registry/cito" }, { - "@value": "cell reprogramming" + "@id": "https://bioregistry.io/registry/flybrain.ndb" }, { - "@value": "basic science" + "@id": "https://bioregistry.io/registry/omo" }, { - "@value": "mouse strain" + "@id": "https://bioregistry.io/registry/nif.dysfunction" }, { - "@value": "embryonic stem cell" + "@id": "https://bioregistry.io/registry/ndc" }, { - "@value": "mouse embryonic stem cell line" + "@id": "https://bioregistry.io/registry/bgee.organ" }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/obib" }, { - "@value": "embryonic stem cell line" + "@id": "https://bioregistry.io/registry/bioschemas" }, { - "@value": "cell replacement" + "@id": "https://bioregistry.io/registry/dashr" }, { - "@value": "pancreatic islet development" + "@id": "https://bioregistry.io/registry/smpdb" }, { - "@value": "basic research" + "@id": "https://bioregistry.io/registry/trnadbce" }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/registry/mi" }, { - "@value": "protocol" + "@id": "https://bioregistry.io/registry/vita" }, { - "@value": "pancreas" + "@id": "https://bioregistry.io/registry/ceph" }, { - "@value": "adenovirus" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.betacell.org/" - }, - "https://bioregistry.io/schema/#0000005": "4623", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:BCBC_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:BCBC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/resolver/RRID:BCBC_4623" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bcbc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/sedml.format", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SED-ML data format" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/sedml.format" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sed-ml.org/" - }, - "https://bioregistry.io/schema/#0000005": "csv", - "https://bioregistry.io/schema/#0000006": "https://sed-ml.org/urns.html#format:$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\..*?)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://sed-ml.org/urns.html#format:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sed-ml.org/urns.html#format:csv" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sedml.format" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/github.pull", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A pull request in any public repository on GitHub.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GitHub Pull Request" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "software engineering" + "@id": "https://bioregistry.io/registry/cameo" }, { - "@value": "project management" + "@id": "https://bioregistry.io/registry/habronattus" }, { - "@value": "knowledge and information systems" + "@id": "https://bioregistry.io/registry/omid" }, { - "@value": "version control" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/" - }, - "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry/416", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/resolve/github/pull/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/resolve/github/pull/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/resolve/github/pull/biopragmatics/bioregistry/416" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "github.pull" - } - }, - { - "@id": "https://bioregistry.io/registry/swh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Software Heritage is the universal archive of software source code.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Software Heritage" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/swh" + "@id": "https://bioregistry.io/registry/ornaseq" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh" + "@id": "https://bioregistry.io/registry/civic.sid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWH" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://archive.softwareheritage.org" - }, - "https://bioregistry.io/schema/#0000005": "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d", - "https://bioregistry.io/schema/#0000006": "https://archive.softwareheritage.org/browse/swh:$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://archive.softwareheritage.org/browse/swh:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://archive.softwareheritage.org/browse/swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "swh" - } - }, - { - "@id": "https://bioregistry.io/registry/fabio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/fabio" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FaBiO, the FRBR-aligned Bibliographic Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/FaBiO" + "@id": "https://bioregistry.io/registry/eolife" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio" + "@id": "https://bioregistry.io/registry/unimod" }, { - "@id": "https://fairsharing.org/FAIRsharing.2f3180" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/agricola" }, { - "@value": "subject agnostic" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/sparontologies/fabio" - }, - "https://bioregistry.io/schema/#0000005": "d4e2515", - "https://bioregistry.io/schema/#0000006": "https://sparontologies.github.io/fabio/current/fabio.html#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/FaBiO/1/fabio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "https://sparontologies.github.io/fabio/current/fabio.html#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sparontologies.github.io/fabio/current/fabio.html#d4e2515" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fabio" - } - }, - { - "@id": "http://www.wikidata.org/entity/P675", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZFA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ctwd7b", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mpi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/nlfff", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NLFFF Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/nlfff" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nlfff.dataset.deepsolar.space/en/" - }, - "https://bioregistry.io/schema/#0000005": "345201101230312003", - "https://bioregistry.io/schema/#0000006": "http://database.deepsolar.space:18080/dbs/nlfff/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://database.deepsolar.space:18080/dbs/nlfff/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://database.deepsolar.space:18080/dbs/nlfff/345201101230312003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlfff" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MCRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4jg0qw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-0682-3089", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Sehnal" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "david.sehnal@gmail.com" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hssp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ezwdhz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/merops.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/merops" + "@id": "https://bioregistry.io/registry/biopixie" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MEROPS Family" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/merops.family" + "@id": "https://bioregistry.io/registry/miro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY" + "@id": "https://bioregistry.io/registry/ymdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://merops.sanger.ac.uk/index.htm" - }, - "https://bioregistry.io/schema/#0000005": "S1", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1", - "https://bioregistry.io/schema/#0000008": "^[SCTAGMNU]\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=S1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "merops.family" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_345", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mge", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-9614-7976", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mauno Vihinen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mauno.vihinen@med.lu.se" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/cog.pathway", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/cog" + "@id": "https://bioregistry.io/registry/hgnc.genegroup" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COG Pathways" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/pathways" - }, - "https://bioregistry.io/schema/#0000005": "NAD%20biosynthesis", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2265-5572" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/pathway/NAD%20biosynthesis" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cog.pathway" - } - }, - { - "@id": "https://bioregistry.io/registry/mpio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of minimum information regarding potential drug-drug interaction information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/MPIO-Developers/MPIO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimum PDDI Information Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio" + "@id": "https://bioregistry.io/registry/pharmgkb.disease" }, { - "@id": "http://www.ontobee.org/ontology/MPIO" + "@id": "https://bioregistry.io/registry/nucleotide" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO" + "@id": "https://bioregistry.io/registry/worldavatar.compchem" }, { - "@id": "http://aber-owl.net/ontology/MPIO" + "@id": "https://bioregistry.io/registry/sao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MPIO" + "@id": "https://bioregistry.io/registry/ensembl.bacteria" }, { - "@id": "https://www.obofoundry.org/ontology/mpio" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/registry/dsm4" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/MPIO-Developers/MPIO" - }, - "https://bioregistry.io/schema/#0000005": "0000004", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MPIO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mpio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1834-3856" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MPIO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MPIO_0000004" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mpio" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.qt3w7z", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The set of prefixes used in the Cellosaurus resource" - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP" + "@id": "https://bioregistry.io/registry/ddinter.interaction" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP" + "@id": "https://bioregistry.io/registry/irefweb" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID" + "@id": "https://bioregistry.io/registry/oryzabase.mutant" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID" + "@id": "https://bioregistry.io/registry/arrayexpress" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank" + "@id": "https://bioregistry.io/registry/iceberg.family" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR" + "@id": "https://bioregistry.io/registry/pubchem.classification" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC" + "@id": "https://bioregistry.io/registry/mmrrc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC" + "@id": "https://bioregistry.io/registry/disprot.region" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN" + "@id": "https://bioregistry.io/registry/scopus.affiliation" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC" + "@id": "https://bioregistry.io/registry/co_348" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB" + "@id": "https://bioregistry.io/registry/clinvar.submission" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD" + "@id": "https://bioregistry.io/registry/vsao" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets" + "@id": "https://bioregistry.io/registry/pocketome" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio" + "@id": "https://bioregistry.io/registry/gnps.task" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB" + "@id": "https://bioregistry.io/registry/clao" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR" + "@id": "https://bioregistry.io/registry/mmmp.biomaps" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB" + "@id": "https://bioregistry.io/registry/nbn" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram" + "@id": "https://bioregistry.io/registry/pombase" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI" + "@id": "https://bioregistry.io/registry/ncbiprotein" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata" + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI" + "@id": "https://bioregistry.io/registry/ogg" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE" + "@id": "https://bioregistry.io/registry/ebisc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO" + "@id": "https://bioregistry.io/registry/peptideatlas" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD" + "@id": "https://bioregistry.io/registry/mmsinc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA" + "@id": "https://bioregistry.io/registry/bacdive" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB" + "@id": "https://bioregistry.io/registry/ms" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC" + "@id": "https://bioregistry.io/registry/enm" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA" + "@id": "https://bioregistry.io/registry/gudmap" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC" + "@id": "https://bioregistry.io/registry/cazy" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix" + "@id": "https://bioregistry.io/registry/foodex2" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB" + "@id": "https://bioregistry.io/registry/mba" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS" + "@id": "https://bioregistry.io/registry/prosite" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP" + "@id": "https://bioregistry.io/registry/htn" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB" + "@id": "https://bioregistry.io/registry/eupath" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON" + "@id": "https://bioregistry.io/registry/dbmhc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH" + "@id": "https://bioregistry.io/registry/lbo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line" + "@id": "https://bioregistry.io/registry/aeo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO" + "@id": "https://bioregistry.io/registry/lonza" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ" + "@id": "https://bioregistry.io/registry/evm" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt" + "@id": "https://bioregistry.io/registry/subtilist" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP" + "@id": "https://bioregistry.io/registry/lter" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights" + "@id": "https://bioregistry.io/registry/uniprot.chain" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB" + "@id": "https://bioregistry.io/registry/kegg.genome" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB" + "@id": "https://bioregistry.io/registry/rxnorm" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive" + "@id": "https://bioregistry.io/registry/oba" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB" + "@id": "https://bioregistry.io/registry/one" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress" + "@id": "https://bioregistry.io/registry/graingenes.reference" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer" + "@id": "https://bioregistry.io/registry/imsr_tac" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase" + "@id": "https://bioregistry.io/registry/fbql" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas" + "@id": "https://bioregistry.io/registry/hgnc.symbol" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples" + "@id": "https://bioregistry.io/registry/darc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX" + "@id": "https://bioregistry.io/registry/dlxc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore" + "@id": "https://bioregistry.io/registry/uspto" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC" + "@id": "https://bioregistry.io/registry/lincs.protein" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery" + "@id": "https://bioregistry.io/registry/idomal" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO" + "@id": "https://bioregistry.io/registry/oncotree" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar" + "@id": "https://bioregistry.io/registry/ivdb" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap" + "@id": "https://bioregistry.io/registry/chembl.target" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent" + "@id": "https://bioregistry.io/registry/sael" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC" + "@id": "https://bioregistry.io/registry/vectorbase" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB" + "@id": "https://bioregistry.io/registry/zfa" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell" + "@id": "https://bioregistry.io/registry/jcrb" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci" + "@id": "https://bioregistry.io/registry/stn" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM" + "@id": "https://bioregistry.io/registry/cog.category" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE" + "@id": "https://bioregistry.io/registry/dbd" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE" + "@id": "https://bioregistry.io/registry/dashr.expression" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs" + "@id": "https://bioregistry.io/registry/biostudies" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID" + "@id": "https://bioregistry.io/registry/gateway" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI" + "@id": "https://bioregistry.io/registry/pmap.cutdb" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells" + "@id": "https://bioregistry.io/registry/vbase2" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC" + "@id": "https://bioregistry.io/registry/knapsack" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW" + "@id": "https://bioregistry.io/registry/bartoc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno" + "@id": "https://bioregistry.io/registry/sh" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast" + "@id": "https://bioregistry.io/registry/nucleardb" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg" + "@id": "https://bioregistry.io/registry/faldo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell" + "@id": "https://bioregistry.io/registry/doco" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free" + "@id": "https://bioregistry.io/registry/noncodev4.gene" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio" + "@id": "https://bioregistry.io/registry/rnamods" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase" + "@id": "https://bioregistry.io/registry/umbbd.rule" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources" + "@id": "https://bioregistry.io/registry/rfc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub" + "@id": "https://bioregistry.io/registry/shareloc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus" + "@id": "https://bioregistry.io/registry/prodom" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB" + "@id": "https://bioregistry.io/registry/dbsnp" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL" + "@id": "https://bioregistry.io/registry/pibase" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza" + "@id": "https://bioregistry.io/registry/gramene.reference" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO" + "@id": "https://bioregistry.io/registry/cmpo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC" + "@id": "https://bioregistry.io/registry/nlx.dys" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE" + "@id": "https://bioregistry.io/registry/span" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC" + "@id": "https://bioregistry.io/registry/nomen" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA" + "@id": "https://bioregistry.io/registry/oarcs" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC" + "@id": "https://bioregistry.io/registry/ricenetdb.mirna" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC" + "@id": "https://bioregistry.io/registry/inchikey" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO" + "@id": "https://bioregistry.io/registry/kupo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis" + "@id": "https://bioregistry.io/registry/ensemblglossary" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO" + "@id": "https://bioregistry.io/registry/nextprot.family" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam" + "@id": "https://bioregistry.io/registry/idoo" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport" + "@id": "https://bioregistry.io/registry/nkos" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed" + "@id": "https://bioregistry.io/registry/ribocentre" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E" + "@id": "https://bioregistry.io/registry/sharkipedia.species" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic" + "@id": "https://bioregistry.io/registry/fao" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i" + "@id": "https://bioregistry.io/registry/vdrc" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem" + "@id": "https://bioregistry.io/registry/allergome" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP" + "@id": "https://bioregistry.io/registry/sigmaaldrich" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellosaurus Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://web.expasy.org/cellosaurus/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "4DN" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2826-6444" - } - }, - { - "@id": "http://www.ontobee.org/ontology/EFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6xq0ee", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/exac.transcript", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ExAC Transcript" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/pco" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript" + "@id": "https://bioregistry.io/registry/exo" }, { - "@id": "https://registry.identifiers.org/registry/exac.transcript" + "@id": "https://bioregistry.io/registry/sedml.format" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://exac.broadinstitute.org/" - }, - "https://bioregistry.io/schema/#0000005": "ENST00000407236", - "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/transcript/$1", - "https://bioregistry.io/schema/#0000008": "^ENST\\d{11}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/transcript/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://exac.broadinstitute.org/transcript/ENST00000407236" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "exac.transcript" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c23cqq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012731", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/chembl.target", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HOIP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/AIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/rnao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DATF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/iao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/information-artifact-ontology/IAO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Information Artifact Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/bigg.model" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao" + "@id": "https://bioregistry.io/registry/fbbi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IAO" + "@id": "https://bioregistry.io/registry/protcom" }, { - "@id": "https://registry.identifiers.org/registry/iao" + "@id": "https://bioregistry.io/registry/odc.sci" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao" + "@id": "https://bioregistry.io/registry/co_346" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IAO" + "@id": "https://bioregistry.io/registry/imsr.apb" }, { - "@id": "http://www.ontobee.org/ontology/IAO" + "@id": "https://bioregistry.io/registry/biomodels.db" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO" + "@id": "https://bioregistry.io/registry/pubmed" }, { - "@id": "https://www.obofoundry.org/ontology/iao" + "@id": "https://bioregistry.io/registry/nmr" }, { - "@id": "https://fairsharing.org/FAIRsharing.gq1xtx" + "@id": "https://bioregistry.io/registry/mimodb" }, { - "@id": "http://aber-owl.net/ontology/IAO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/fivestars" + }, { - "@value": "knowledge and information systems" + "@id": "https://bioregistry.io/registry/rgap" }, { - "@value": "data management" + "@id": "https://bioregistry.io/registry/mat" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/isrctn" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/cryptodb" }, { - "@value": "subject agnostic" + "@id": "https://bioregistry.io/registry/dhba" }, { - "@value": "biomedical science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/information-artifact-ontology/IAO/" - }, - "https://bioregistry.io/schema/#0000005": "0000030", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/iao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/registry/eaglei" + }, { - "@id": "https://bioregistry.io/registry/maxo" + "@id": "https://bioregistry.io/registry/hms.lincs.antibody" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://bioregistry.io/registry/echinobase" }, { - "@id": "https://bioregistry.io/registry/xpo" + "@id": "https://bioregistry.io/registry/worfdb" }, { - "@id": "https://bioregistry.io/registry/duo" + "@id": "https://bioregistry.io/registry/co_325" }, { - "@id": "https://bioregistry.io/registry/psdo" + "@id": "https://bioregistry.io/registry/transportdb" }, { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://bioregistry.io/registry/probonto" }, { - "@id": "https://bioregistry.io/registry/clyh" + "@id": "https://bioregistry.io/registry/ratmap" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "https://bioregistry.io/registry/t3db" }, { - "@id": "https://bioregistry.io/registry/mcro" + "@id": "https://bioregistry.io/registry/casspc" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/registry/co_336" }, { - "@id": "https://bioregistry.io/registry/labo" + "@id": "https://bioregistry.io/registry/skip" }, { - "@id": "https://bioregistry.io/registry/ecto" + "@id": "https://bioregistry.io/registry/bgee.stage" + }, + { + "@id": "https://bioregistry.io/registry/hpm.peptide" + }, + { + "@id": "https://bioregistry.io/registry/rrrc" + }, + { + "@id": "https://bioregistry.io/registry/addgene" + }, + { + "@id": "https://bioregistry.io/registry/genatlas" + }, + { + "@id": "https://bioregistry.io/registry/cco" + }, + { + "@id": "https://bioregistry.io/registry/rnaloops" + }, + { + "@id": "https://bioregistry.io/registry/zfs" + }, + { + "@id": "https://bioregistry.io/registry/dbgap" + }, + { + "@id": "https://bioregistry.io/registry/oryzabase.gene" + }, + { + "@id": "https://bioregistry.io/registry/ccle" + }, + { + "@id": "https://bioregistry.io/registry/repec" + }, + { + "@id": "https://bioregistry.io/registry/gmd.profile" + }, + { + "@id": "https://bioregistry.io/registry/imr" + }, + { + "@id": "https://bioregistry.io/registry/ecocyc" + }, + { + "@id": "https://bioregistry.io/registry/ypo" + }, + { + "@id": "https://bioregistry.io/registry/minid" + }, + { + "@id": "https://bioregistry.io/registry/gwascentral.phenotype" + }, + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/topfind" + }, + { + "@id": "https://bioregistry.io/registry/ccf" + }, + { + "@id": "https://bioregistry.io/registry/pazar" + }, + { + "@id": "https://bioregistry.io/registry/uniref" + }, + { + "@id": "https://bioregistry.io/registry/ncbidrs" + }, + { + "@id": "https://bioregistry.io/registry/panther.pthcmp" + }, + { + "@id": "https://bioregistry.io/registry/chembl" + }, + { + "@id": "https://bioregistry.io/registry/massive" + }, + { + "@id": "https://bioregistry.io/registry/co_320" + }, + { + "@id": "https://bioregistry.io/registry/genecards.geneannot" + }, + { + "@id": "https://bioregistry.io/registry/ecmdb" + }, + { + "@id": "https://bioregistry.io/registry/scop" + }, + { + "@id": "https://bioregistry.io/registry/gold.meta" + }, + { + "@id": "https://bioregistry.io/registry/mirbase.mature" + }, + { + "@id": "https://bioregistry.io/registry/gecko" + }, + { + "@id": "https://bioregistry.io/registry/spp" + }, + { + "@id": "https://bioregistry.io/registry/cellopub" + }, + { + "@id": "https://bioregistry.io/registry/cbioportal" + }, + { + "@id": "https://bioregistry.io/registry/dandi" + }, + { + "@id": "https://bioregistry.io/registry/jstor" + }, + { + "@id": "https://bioregistry.io/registry/seed.compound" + }, + { + "@id": "https://bioregistry.io/registry/edam" + }, + { + "@id": "https://bioregistry.io/registry/oban" + }, + { + "@id": "https://bioregistry.io/registry/lincs.cell" + }, + { + "@id": "https://bioregistry.io/registry/door" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bioregistry" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/IAO_0000030" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://bioregistry.io" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iao" + "https://bioregistry.io/schema/#0000005": { + "@value": "chebi" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://bioregistry.io/registry/$1" + }, + "https://bioregistry.io/schema/#0000007": { + "@value": "https://bioregistry.io/$1:$2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" } }, { - "@id": "https://www.obofoundry.org/ontology/propreo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/ARO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder", + "@id": "https://bioregistry.io/registry/leafsnap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-4071-8397", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zoë May Pendlington" + "@value": "Leafsnap" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "zmp@ebi.ac.uk" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P10538" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://leafsnap.com/" + }, + "https://bioregistry.io/schema/#0000005": "Amelanchier laevis", + "https://bioregistry.io/schema/#0000006": "http://leafsnap.com/species/$1/", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/leafsnap:", + "https://bioregistry.io/schema/#0000029": { + "@value": "leafsnap" } }, { - "@id": "http://www.ontobee.org/ontology/MS", + "@id": "https://fairsharing.org/FAIRsharing.1evfpc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/dolce", + "@id": "https://bioregistry.io/registry/mirnao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use.", + "http://purl.org/dc/terms/description": "An application ontology for use with miRNA databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Descriptive Ontology for Linguistic and Cognitive Engineering" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.ae8hpt" + "@value": "microRNA Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "linguistics" + "@id": "https://www.obofoundry.org/ontology/mirnao" }, { - "@value": "knowledge and information systems" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO" }, { - "@value": "subject agnostic" + "@id": "http://aber-owl.net/ontology/MIRNAO" }, { - "@value": "computer science" + "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO" + }, + { + "@id": "http://www.ontobee.org/ontology/miRNAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.loa.istc.cnr.it/dolce/overview.html" + "@id": "http://code.google.com/p/mirna-ontology/" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIRNAO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mirnao.owl" }, "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1635-4810" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIRNAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "dolce" - } - }, - { - "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ecoportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcat", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "mirnao" } }, { - "@id": "http://www.ontobee.org/ontology/TADS", + "@id": "https://bioregistry.io/registry/hbvar", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "A Database of Human Hemoglobin Variants and Thalassemias" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/hbvar" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://globin.cse.psu.edu/globin/hbvar" + }, + "https://bioregistry.io/schema/#0000005": "2526", + "https://bioregistry.io/schema/#0000006": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=2526" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hbvar" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ZFS", + "@id": "https://registry.identifiers.org/registry/ecoliwiki", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/intact.molecule", + "@id": "https://bioregistry.io/registry/corum", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.", + "http://purl.org/dc/terms/description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IntAct Molecule" + "@value": "Comprehensive Resource of Mammalian protein complexes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/intact.molecule" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule" + "@id": "https://registry.identifiers.org/registry/corum" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ohbpNw" + }, + { + "@id": "https://www.uniprot.org/database/DB-0224" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM" + }, + { + "@id": "https://registry.bio2kg.org/resource/corum" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biology" + }, + { + "@value": "protein" + }, + { + "@value": "bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/intact/" + "@id": "https://mips.helmholtz-muenchen.de/genre/proj/corum/" }, - "https://bioregistry.io/schema/#0000005": "EBI-366083", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/search?query=$1", - "https://bioregistry.io/schema/#0000008": "^EBI\\-[0-9]+$", + "https://bioregistry.io/schema/#0000005": "100", + "https://bioregistry.io/schema/#0000006": "https://mips.helmholtz-muenchen.de/corum/?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/search?query=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1705-3515" + }, + "https://bioregistry.io/schema/#0000024": "https://mips.helmholtz-muenchen.de/corum/?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/intact/search?query=EBI-366083" + "@id": "https://mips.helmholtz-muenchen.de/corum/?id=100" }, "https://bioregistry.io/schema/#0000029": { - "@value": "intact.molecule" + "@value": "corum" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/erv", + "@id": "https://registry.identifiers.org/registry/vmhmetabolite", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/fairsharing", + "@id": "http://www.ontobee.org/ontology/TTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mphj4z", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/rnamods", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wcpd6f", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.1tbrdz", + "@id": "https://fairsharing.org/FAIRsharing.4m97ah", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ensemblglossary", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/pathguide", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used.", + "http://purl.org/dc/terms/description": "Pathguide contains information about 325 biological related resources and molecular interaction related resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Glossary" + "@value": "Pathguide" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/pathguide" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" + }, + { + "@value": "small molecule" + }, + { + "@value": "protein" + }, + { + "@value": "interaction" + }, + { + "@value": "gene" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ensembl.org/glossary" - }, - "https://bioregistry.io/schema/#0000005": "0000198", - "https://bioregistry.io/schema/#0000006": "http://ensembl.org/glossary/ENSGLOSSARY_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://ensembl.org/glossary/ensembl-glossary/releases/2023-01-04/ensembl-glossary.owl" + "@id": "http://pathguide.org" }, + "https://bioregistry.io/schema/#0000005": "49", + "https://bioregistry.io/schema/#0000006": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ensembl.org/glossary/ENSGLOSSARY_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ensembl.org/glossary/ENSGLOSSARY_0000198" + "@id": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=49" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ensemblglossary" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/interpro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bgee.stage", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "pathguide" } }, { - "@id": "https://registry.identifiers.org/registry/glida.gpcr", + "@id": "https://bioregistry.io/registry/civic.vgid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC Variant Group" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/civic.vgid" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "16", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/variant_group/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/variant_group/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://civicdb.org/links/variant_group/16" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "civic.vgid" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID", + "@id": "http://www.ontobee.org/ontology/OBIB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.bio2kg.org/resource/sao", + "@id": "https://bioregistry.io/registry/uminctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An additional Japanese clinical trial registry", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "University hospital Medical Information Network Clinical Trial Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.umin.ac.jp/ctr/index.htm" + }, + "https://bioregistry.io/schema/#0000005": "UMIN000049383", + "https://bioregistry.io/schema/#0000008": "^UMIN\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "uminctr" } }, { - "@id": "https://bioregistry.io/registry/string", + "@id": "https://bioregistry.io/registry/interpro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.", + "http://purl.org/dc/terms/description": "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://proteinswebteam.github.io/interpro-blog/" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Search Tool for Retrieval of Interacting Genes/Proteins" + "@value": "InterPro" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/string" + "@id": "https://www.obofoundry.org/ontology/ipr" }, { - "@id": "http://edamontology.org/data_2302" + "@id": "https://registry.identifiers.org/registry/interpro" }, { - "@id": "https://www.re3data.org/repository/r3d100010604" + "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STRING" + "@id": "https://www.re3data.org/repository/r3d100010798" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string" + "@id": "https://fairsharing.org/FAIRsharing.pda11d" }, { - "@id": "https://registry.bio2kg.org/resource/string" + "@id": "http://edamontology.org/data_1133" }, { - "@id": "https://fairsharing.org/FAIRsharing.9b7wvk" + "@id": "https://registry.bio2kg.org/resource/interpro" }, { - "@id": "https://www.uniprot.org/database/DB-0141" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro" + }, + { + "@id": "http://www.wikidata.org/entity/P2926" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IPR" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro" + }, + { + "@id": "https://www.uniprot.org/database/DB-0052" } ], "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, { "@value": "protein" }, { - "@value": "interaction" + "@value": "bioinformatics" + }, + { + "@value": "obo" }, { "@value": "biology" }, { - "@value": "life science" + "@value": "domain" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://string.embl.de/" - }, - "https://bioregistry.io/schema/#0000005": "P53350", - "https://bioregistry.io/schema/#0000006": "http://string.embl.de/interactions/$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "http://www.ebi.ac.uk/interpro/index.html" }, + "https://bioregistry.io/schema/#0000005": "IPR016380", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IPR_$1", + "https://bioregistry.io/schema/#0000008": "^IPR\\d{6}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2627-833X" + "@id": "_:N4b3abacffda54ddcb05fdf06621a953e" }, - "https://bioregistry.io/schema/#0000024": "http://string.embl.de/interactions/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "IP" + }, + { + "@value": "InterPro" + }, + { + "@value": "IPR" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IPR_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://string.embl.de/interactions/P53350" + "@id": "http://purl.obolibrary.org/obo/IPR_IPR016380" }, "https://bioregistry.io/schema/#0000029": { - "@value": "string" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/doqcs.model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/PROV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "interpro" } }, { - "@id": "https://registry.identifiers.org/registry/pw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "_:N4b3abacffda54ddcb05fdf06621a953e", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "InterPro Help" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "interhelp@ebi.ac.uk" } }, { - "@id": "https://bioregistry.io/registry/reaxys", + "@id": "https://bioregistry.io/registry/xl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Reaxys" + "@value": "Cross-linker reagents ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P1579" + "@id": "http://aber-owl.net/ontology/XL" }, { - "@id": "http://edamontology.org/data_1003" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.reaxys.com" - }, - "https://bioregistry.io/schema/#0000005": "1257009", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/XL" + }, { - "@value": "Beilstein" + "@id": "http://www.ontobee.org/ontology/XL" }, { - "@value": "Reaxys" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.psidev.info/groups/controlled-vocabularies" + }, + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/xl.owl" + }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "reaxys" + "@value": "xl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EUPATH", + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/ligandbox", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "http://edamontology.org/data_2665", + "@id": "https://fairsharing.org/FAIRsharing.fx0mw7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/unimod", + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.jjb2p2", + "@id": "https://bioregistry.io/registry/omid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OpenCitations Meta Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/omid" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://opencitations.net/" + }, + "https://bioregistry.io/schema/#0000005": "br/0601", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/meta/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/meta/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/oc/meta/br/0601" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "omid" } }, { - "@id": "https://www.re3data.org/repository/r3d100010405", + "@id": "https://fairsharing.org/FAIRsharing.vq28qp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://edamontology.org/data_1041", + "@id": "https://bioportal.bioontology.org/ontologies/BFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.wikidata.org/entity/P4971", + "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.bio2kg.org/resource/isfinder", + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/bugbase.protocol", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0002-3528-5267", + "@id": "https://bioregistry.io/registry/unipathway.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sofia Robb" + "@value": "UniPathway Reaction" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "smr@stowers.org" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION" + }, + { + "@id": "https://registry.identifiers.org/registry/unipathway.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway" + }, + "https://bioregistry.io/schema/#0000005": "UCR00226", + "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1", + "https://bioregistry.io/schema/#0000008": "^UCR\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=UCR00226" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "unipathway.reaction" } }, { - "@id": "https://registry.identifiers.org/registry/prosite", + "@id": "https://bioregistry.io/registry/nextprot.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "neXtProt family" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nextprot.org/" + }, + "https://bioregistry.io/schema/#0000005": "01406", + "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/term/FA-$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "NXPFA" + }, + "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/term/FA-", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.nextprot.org/term/FA-01406" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nextprot.family" } }, { - "@id": "https://www.obofoundry.org/ontology/habronattus", + "@id": "http://www.wikidata.org/entity/P3860", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/mmrrc", + "@id": "https://www.uniprot.org/database/DB-0228", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://aber-owl.net/ontology/AERO", + "@id": "https://registry.identifiers.org/registry/autdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/chembl", + "@id": "https://fairsharing.org/FAIRsharing.6bc7h9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DTO", + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol", + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-1560-809X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jesper Friis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jesper.friis@sintef.no" + "@id": "https://registry.bio2kg.org/resource/mirbase.mature", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase", + "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/grassbase", + "@id": "https://bioregistry.io/registry/pseudomonas", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species.", + "http://purl.org/dc/terms/description": "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GrassBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1832" + "@value": "Pseudomonas Genome Database" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/pseudomonas" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.kew.org/data/grasses-syn/index.htm" + "@id": "http://www.pseudomonas.com/" }, - "https://bioregistry.io/schema/#0000005": "imp10873", - "https://bioregistry.io/schema/#0000006": "https://www.kew.org/data/grasses-db/www/$1", - "https://bioregistry.io/schema/#0000008": "^(imp|gen)\\d{5}$", + "https://bioregistry.io/schema/#0000005": "PSEEN0001", + "https://bioregistry.io/schema/#0000006": "http://www.pseudomonas.com/feature/show/?locus_tag=$1", + "https://bioregistry.io/schema/#0000008": "^P\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.kew.org/data/grasses-db/www/", + "https://bioregistry.io/schema/#0000024": "http://www.pseudomonas.com/feature/show/?locus_tag=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kew.org/data/grasses-db/www/imp10873" + "@id": "http://www.pseudomonas.com/feature/show/?locus_tag=PSEEN0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "grassbase" + "@value": "pseudomonas" } }, { - "@id": "http://aber-owl.net/ontology/ICDO", + "@id": "https://registry.identifiers.org/registry/sabiork.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/rapdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { @@ -56520,1605 +50343,1988 @@ } }, { - "@id": "http://www.ontobee.org/ontology/CHMO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://edamontology.org/data_1042", + "@id": "http://agroportal.lirmm.fr/ontologies/EO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways", + "@id": "https://bioregistry.io/metaregistry/biocontext/MDM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/fivestars", + "@id": "https://orcid.org/0000-0003-0443-9902", + "http://purl.org/dc/terms/contributor": [ + { + "@id": "https://bioregistry.io/registry/coconut" + }, + { + "@id": "https://bioregistry.io/registry/lotus" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Adriano Rutz" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "adriano.rutz@ik.me" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mfo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4fa657", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/hovergen", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata.", + "http://purl.org/dc/terms/description": "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/fivestars" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Homologous Vertebrate Genes Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dg1f0e" + }, + { + "@id": "https://registry.bio2kg.org/resource/hovergen" + }, + { + "@id": "https://registry.identifiers.org/registry/hovergen" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "protein" + }, + { + "@value": "life science" + }, + { + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pbil.univ-lyon1.fr/databases/hovergen.php" }, + "https://bioregistry.io/schema/#0000005": "HBG004341", + "https://bioregistry.io/schema/#0000006": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN", + "https://bioregistry.io/schema/#0000008": "^HBG\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2836-3463" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hovergen:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=HBG004341&db=HOVERGEN" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hovergen" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/protonet.cluster", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-9528-6018", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Five Stars of Online Research Articles Ontology" + "@value": "Gianni Cesareni" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.6dfe9b" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gianni.cesareni@torvergata.it" + } + }, + { + "@id": "https://orcid.org/0000-0001-8682-0568", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rudolf T. Pillich" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rpillich@ucsd.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010546", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/wicell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "WiCell Research Institute Cell Collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/fivestars" + "@id": "https://www.wicell.org" }, - "https://bioregistry.io/schema/#0000005": "hasOpenAccessRating", + "https://bioregistry.io/schema/#0000005": "ai10e-kctd13b", + "https://bioregistry.io/schema/#0000006": "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/wicell:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/ai10e-kctd13b.cmsx?closable=true" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fivestars" + "@value": "wicell" } }, { - "@id": "http://aber-owl.net/ontology/SUGARBIND", + "@id": "http://www.ontobee.org/ontology/DPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.obofoundry.org/ontology/proco", + "@id": "https://www.obofoundry.org/ontology/idomal", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection", + "@id": "https://bioregistry.io/registry/goeco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GO Evidence Code" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://geneontology.org/docs/guide-go-evidence-codes/" + }, + "https://bioregistry.io/schema/#0000005": "IPI", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "goeco" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo", + "@id": "https://bioregistry.io/registry/peff", + "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PSI Extended File Format" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.psidev.info/peff" + }, + "https://bioregistry.io/schema/#0000005": "0001011", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/peff/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/peff/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/peff/0001011" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "peff" } }, { - "@id": "https://bioregistry.io/registry/tritrypdb", + "@id": "https://registry.bio2kg.org/resource/snp500cancer", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/pato", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/pato-ontology/pato" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TriTrypDB" + "@value": "Phenotype And Trait Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/tritrypdb" + "@id": "https://registry.bio2kg.org/resource/pato" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB" + "@id": "https://registry.identifiers.org/registry/pato" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato" }, { - "@id": "https://fairsharing.org/FAIRsharing.fs1z27" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB" + "@id": "http://www.ontobee.org/ontology/PATO" }, { - "@id": "https://www.re3data.org/repository/r3d100011479" + "@id": "https://fairsharing.org/FAIRsharing.ezwdhz" + }, + { + "@id": "https://www.obofoundry.org/ontology/pato" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PATO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PATO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PATO" + }, + { + "@id": "http://aber-owl.net/ontology/PATO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "obo" }, { - "@value": "comparative genomics" + "@value": "biology" }, { - "@value": "infectious disease medicine" + "@value": "quality" + }, + { + "@value": "biodiversity" + }, + { + "@value": "phenotype" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://tritrypdb.org/tritrypdb/" + "@id": "https://github.com/pato-ontology/pato/" + }, + "https://bioregistry.io/schema/#0000005": "0001998", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PATO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/pato.owl" }, - "https://bioregistry.io/schema/#0000005": "Tb927.8.620", - "https://bioregistry.io/schema/#0000006": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?\\w+(\\.)?\\w+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/ms" + }, + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/aism" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/fovt" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/proco" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + }, + { + "@id": "https://bioregistry.io/registry/xpo" + }, + { + "@id": "https://bioregistry.io/registry/zp" + }, + { + "@id": "https://bioregistry.io/registry/pcl" + }, + { + "@id": "https://bioregistry.io/registry/planp" + }, + { + "@id": "https://bioregistry.io/registry/ecocore" + }, + { + "@id": "https://bioregistry.io/registry/ecto" + }, + { + "@id": "https://bioregistry.io/registry/cdno" + }, + { + "@id": "https://bioregistry.io/registry/phipo" + }, + { + "@id": "https://bioregistry.io/registry/mco" + }, + { + "@id": "https://bioregistry.io/registry/cl" + }, + { + "@id": "https://bioregistry.io/registry/rbo" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4446-6200" + "@id": "https://orcid.org/0000-0002-2061-091X" }, - "https://bioregistry.io/schema/#0000024": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PATO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=Tb927.8.620" + "@id": "http://purl.obolibrary.org/obo/PATO_0001998" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tritrypdb" + "@value": "pato" } }, { - "@id": "https://bioregistry.io/registry/bcio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.", + "@id": "https://bioportal.bioontology.org/ontologies/OBOREL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Behaviour Change Intervention Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio" - }, + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f69084", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/piroplasma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pocketome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2652", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/storedb.dataset", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Datasets inside StoreDB", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioportal.bioontology.org/ontologies/BCI-O" + "@id": "https://bioregistry.io/registry/storedb" }, { - "@id": "http://aber-owl.net/ontology/BCI-O" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "STOREDB at University of Cambridge" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.humanbehaviourchange.org/" - }, - "https://bioregistry.io/schema/#0000005": "040000", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/BCI-ontology#$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://humanbehaviourchange.org/ontology/bcio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7203-8399" + "@id": "https://www.storedb.org/" }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/BCI-ontology#", + "https://bioregistry.io/schema/#0000005": "1251", + "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/?STOREDB:DATASET$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/?STOREDB:DATASET", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/BCI-ontology#040000" + "@id": "https://www.storedb.org/?STOREDB:DATASET1251" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bcio" + "@value": "storedb.dataset" } }, { - "@id": "https://bioregistry.io/registry/pathwaycommons", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ExO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/co_340", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language.", + "http://purl.org/dc/terms/description": "Cowpea Trait Dictionary in template v5 - IITA - August 2015", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pathway Commons" + "@value": "Cowpea ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_340" }, { - "@id": "https://www.re3data.org/repository/r3d100012731" + "@id": "https://fairsharing.org/FAIRsharing.31apg2" }, { - "@id": "https://www.uniprot.org/database/DB-0253" + "@id": "https://cropontology.org/ontology/CO_340" }, { - "@id": "https://registry.bio2kg.org/resource/pathwaycommons" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "botany" }, { - "@id": "https://registry.identifiers.org/registry/pathwaycommons" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS" + "@value": "agriculture" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "pathway" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pathwaycommons.org/pc/" + "@id": "https://cropontology.org/ontology/CO_340/Cowpea" + }, + "https://bioregistry.io/schema/#0000005": "0000639", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_340:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_340/Cowpea/owl" }, - "https://bioregistry.io/schema/#0000005": "485991", - "https://bioregistry.io/schema/#0000006": "http://www.pathwaycommons.org/pc/record2.do?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pathwaycommons.org/pc/record2.do?id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N95542206a009415999a81d74302dc9b9" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_340:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pathwaycommons.org/pc/record2.do?id=485991" + "@id": "https://cropontology.org/rdf/CO_340:0000639" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pathwaycommons" + "@value": "co_340" } }, { - "@id": "https://bioregistry.io/registry/dbprobe", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "_:N95542206a009415999a81d74302dc9b9", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Probe database Public registry of nucleic acid reagents" + "@value": "Crop Ontology Helpdesk" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe" - }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.disease", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://registry.identifiers.org/registry/dbprobe" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Diseases" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/dbprobe" + "@id": "http://www.wikidata.org/entity/P11430" }, { - "@id": "http://edamontology.org/data_2719" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "nucleotide" + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe" + "@id": "https://www.uniprot.org/diseases/" + }, + "https://bioregistry.io/schema/#0000005": "DI-04240", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/diseases/$1", + "https://bioregistry.io/schema/#0000008": "^DI-\\d{5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://rest.uniprot.org/diseases/stream?compressed=true&format=obo&query=%28%2A%29" }, - "https://bioregistry.io/schema/#0000005": "1000000", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/probe/?term=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/probe/?term=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "DI" + }, + { + "@value": "SP_DI" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/diseases/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/probe/?term=1000000" + "@id": "https://www.uniprot.org/diseases/DI-04240" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dbprobe" + "@value": "uniprot.disease" } }, { - "@id": "https://bioregistry.io/registry/iresite", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.0a674c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/yeastract", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.", + "http://purl.org/dc/terms/description": "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of experimentally verified IRES structures" + "@value": "Yeast Searching for Transcriptional Regulators and Consensus Tracking" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/iresite" + "@id": "https://fairsharing.org/FAIRsharing.mphj4z" }, { - "@id": "https://fairsharing.org/FAIRsharing.kd39j4" + "@id": "https://registry.bio2kg.org/resource/yeastract" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "dna" }, { - "@value": "rna" + "@value": "life science" }, { "@value": "regulation" + }, + { + "@value": "gene" + }, + { + "@value": "small molecule" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.iresite.org" + "@id": "http://www.yeastract.com" }, - "https://bioregistry.io/schema/#0000005": "322", - "https://bioregistry.io/schema/#0000006": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1", + "https://bioregistry.io/schema/#0000005": "YBR125c", + "https://bioregistry.io/schema/#0000006": "http://www.yeastract.com/view.php?existing=locus&orfname=$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=", + "https://bioregistry.io/schema/#0000024": "http://www.yeastract.com/view.php?existing=locus&orfname=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=322" + "@id": "http://www.yeastract.com/view.php?existing=locus&orfname=YBR125c" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iresite" + "@value": "yeastract" } }, { - "@id": "http://www.wikidata.org/entity/P3117", + "@id": "https://bioregistry.io/metaregistry/biocontext/BTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/CRO", + "@id": "https://registry.identifiers.org/registry/taxonomy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/scop", + "@id": "https://bioregistry.io/registry/rfam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).", + "http://purl.org/dc/terms/description": "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Structural Classification of Proteins - Unique Identifier" + "@value": "Rfam database of RNA families" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/scop" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP" + "@id": "https://fairsharing.org/FAIRsharing.fex4c8" }, { - "@id": "https://registry.bio2kg.org/resource/scop" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam" }, { - "@id": "http://edamontology.org/data_1042" + "@id": "http://edamontology.org/data_2356" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM" + }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/rfam" }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genetics" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scop.berkeley.edu" + "@id": "https://rfam.xfam.org/" }, - "https://bioregistry.io/schema/#0000005": "47419", - "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sunid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "RF00230", + "https://bioregistry.io/schema/#0000006": "https://rfam.xfam.org/family/$1", + "https://bioregistry.io/schema/#0000008": "^RF\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5153-9079" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "scop.sunid" - }, - { - "@value": "scop.sun" - } - ], - "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sunid=", + "https://bioregistry.io/schema/#0000024": "https://rfam.xfam.org/family/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://scop.berkeley.edu/sunid=47419" + "@id": "https://rfam.xfam.org/family/RF00230" }, "https://bioregistry.io/schema/#0000029": { - "@value": "scop" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VANDF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "rfam" } }, { - "@id": "https://registry.bio2kg.org/resource/img.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://orcid.org/0000-0002-1560-809X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jesper Friis" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jesper.friis@sintef.no" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/dictybase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-2406-1145", + "@id": "https://bioregistry.io/registry/nlx.oen", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results).", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Clunie" + "@value": "NIF Standard Ontology: OEN Terms in Neurolex" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dclunie@dclunie.com" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "neuroscience" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "0001000", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/oen_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXOEN" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/oen_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/oen_0001000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.oen" } }, { - "@id": "https://www.re3data.org/repository/r3d100010266", + "@id": "https://registry.bio2kg.org/resource/soy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://edamontology.org/data_1180", + "@id": "https://registry.bio2kg.org/resource/datf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0003-0728-781X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "William Hayes" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "support@bel.bio" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DDANAT", + "@id": "https://registry.bio2kg.org/resource/genage", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.wikidata.org/entity/P4394", + "@id": "http://aber-owl.net/ontology/APOLLO_SV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction", + "@id": "http://aber-owl.net/ontology/OMIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MDM", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao", + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-8424-0604", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/nmdc" + "@id": "https://bioregistry.io/registry/mesh.vocab", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/mesh" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HHS/meshrdf" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Donny Winston" + "@value": "Medical Subject Headings Vocabulary" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "donny@polyneme.xyz" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://hhs.github.io/meshrdf/" + }, + "https://bioregistry.io/schema/#0000005": "term", + "https://bioregistry.io/schema/#0000006": "http://id.nlm.nih.gov/mesh/vocab#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://id.nlm.nih.gov/mesh/vocab#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://id.nlm.nih.gov/mesh/vocab#term" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mesh.vocab" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/agricola", + "@id": "https://fairsharing.org/FAIRsharing.6k0kwd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/easychair.cfp", + "@id": "https://bioregistry.io/registry/uniprot.var", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Conferences in EasyChair", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EasyChair Call for Paper" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://purl.org/dc/terms/description": "The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species.", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "conferences" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@value": "metascience" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Variants" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://easychair.org/cfp/" + "@id": "https://web.expasy.org/variant_pages" }, - "https://bioregistry.io/schema/#0000005": "SysBioCancer2022", - "https://bioregistry.io/schema/#0000006": "https://easychair.org/cfp/$1", + "https://bioregistry.io/schema/#0000005": "068078", + "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/annotation/VAR_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://easychair.org/cfp/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "SP_VAR" + }, + { + "@value": "UPVAR" + }, + { + "@value": "UniProtKB_VAR" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/annotation/VAR_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://easychair.org/cfp/SysBioCancer2022" + "@id": "http://purl.uniprot.org/annotation/VAR_068078" }, "https://bioregistry.io/schema/#0000029": { - "@value": "easychair.cfp" + "@value": "uniprot.var" } }, { - "@id": "https://bioregistry.io/registry/molmovdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ap169a", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/yid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/tccd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits.", + "http://purl.org/dc/terms/description": "Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Macromolecular Movements" + "@value": "The Cell Cycle DB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/molmovdb" + "@id": "https://registry.bio2kg.org/resource/tccd" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" - }, - { - "@value": "classification" + "@value": "pathway" }, { "@value": "protein" }, { - "@value": "small molecule" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinfo.mbb.yale.edu/MolMovDB/" + "@id": "http://www.itb.cnr.it/cellcycle" }, - "https://bioregistry.io/schema/#0000005": "f665230-5267", - "https://bioregistry.io/schema/#0000006": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1", - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000005": "TP53", + "https://bioregistry.io/schema/#0000006": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=", + "https://bioregistry.io/schema/#0000024": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=f665230-5267" + "@id": "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=TP53" }, "https://bioregistry.io/schema/#0000029": { - "@value": "molmovdb" + "@value": "tccd" } }, { - "@id": "https://bioregistry.io/registry/cohd", + "@id": "https://registry.bio2kg.org/resource/maizegdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/pypi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012", + "http://purl.org/dc/terms/description": "The Python Package Index (PyPI) is a repository for Python packages.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/MIT-LCP/mimic-omop" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MIMIC III Database" + "@value": "PyPI" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/pypi" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "health sciences" - }, - { - "@value": "clinical data" - }, - { - "@value": "clinical trials" - }, - { - "@value": "health" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/MIT-LCP/mimic-omop" + "@id": "https://www.python.org/psf/" }, + "https://bioregistry.io/schema/#0000005": "numpy", + "https://bioregistry.io/schema/#0000006": "https://pypi.org/project/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z_][a-zA-Z0-9\\-_]+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://pypi.org/project/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pypi.org/project/numpy" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "cohd" + "@value": "pypi" } }, { - "@id": "https://bioregistry.io/registry/nemo2", + "@id": "http://agroportal.lirmm.fr/ontologies/GEMET", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/registry/chiro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.", + "http://purl.org/dc/terms/description": "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/chiro" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Neural ElectroMagnetic Ontology" + "@value": "ChEBI Integrated Role Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/NEMO" + "@id": "https://bioportal.bioontology.org/ontologies/CHIRO" }, { - "@id": "http://aber-owl.net/ontology/NEMO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro" }, { - "@id": "https://fairsharing.org/FAIRsharing.n66krd" + "@id": "http://aber-owl.net/ontology/CHIRO" + }, + { + "@id": "http://www.ontobee.org/ontology/CHIRO" + }, + { + "@id": "https://www.obofoundry.org/ontology/chiro" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "cognitive neuroscience" - }, - { - "@value": "neurobiology" + "@value": "obo" }, { "@value": "ontology" - }, - { - "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://aimlab.cs.uoregon.edu/NEMO/web/index.html" + "@id": "https://github.com/obophenotype/chiro" }, - "https://bioregistry.io/schema/#0000005": "0000196", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHIRO_$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/NEMO/24/nemo.owl" + "@id": "http://purl.obolibrary.org/obo/chiro.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/hp" + }, + { + "@id": "https://bioregistry.io/registry/pr" + }, + { + "@id": "https://bioregistry.io/registry/mp" + }, + { + "@id": "https://bioregistry.io/registry/go" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0612-0970" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_0000196" + "@id": "https://orcid.org/0000-0001-5208-3432" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHIRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "nemo2" + "@value": "chiro" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://orcid.org/0000-0001-5059-4132", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Marijane White" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "whimar@ohsu.edu" } }, { - "@id": "https://bioregistry.io/registry/classyfire", + "@id": "https://bioregistry.io/registry/ctis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.", + "http://purl.org/dc/terms/description": "This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClassyFire" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/classyfire" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "Clinical Trials Information System" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://classyfire.wishartlab.com/" - }, - "https://bioregistry.io/schema/#0000005": "0004828", - "https://bioregistry.io/schema/#0000006": "http://classyfire.wishartlab.com/tax_nodes/C$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip" + "@id": "https://euclinicaltrials.eu/" }, + "https://bioregistry.io/schema/#0000005": "2023-503698-40-00", + "https://bioregistry.io/schema/#0000006": "https://euclinicaltrials.eu/app/#/view/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d+-\\d+-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "CHEMONTID" - }, - "https://bioregistry.io/schema/#0000024": "http://classyfire.wishartlab.com/tax_nodes/C", + "https://bioregistry.io/schema/#0000024": "https://euclinicaltrials.eu/app/#/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://classyfire.wishartlab.com/tax_nodes/C0004828" + "@id": "https://euclinicaltrials.eu/app/#/view/2023-503698-40-00" }, "https://bioregistry.io/schema/#0000029": { - "@value": "classyfire" + "@value": "ctis" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE", + "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/caps", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://fairsharing.org/FAIRsharing.162003", + "@id": "https://fairsharing.org/FAIRsharing.AYegqK", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rgd", + "@id": "https://bioportal.bioontology.org/ontologies/CHIRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_358", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://edamontology.org/data_1011", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/nucc.characteristic", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.", + "http://purl.org/dc/terms/description": "The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Genome Database" + "@value": "National Uniform Claim Committee Characteristic" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nucc.org/index.php/code-sets-mainmenu-41/provider-characteristics-mainmenu-39" + }, + "https://bioregistry.io/schema/#0000005": "2A", + "https://bioregistry.io/schema/#0000008": "^\\d(\\d|\\w)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "nucc.characteristic" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/rouge", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/RETO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wpxab1", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://edamontology.org/data_1105", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/iceberg.cime", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RGD" + "@id": "https://bioregistry.io/registry/iceberg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ICEberg cis-integrative and mobilizable element" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genomics" }, { - "@id": "https://www.uniprot.org/database/DB-0091" + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_CIME.php?type=alpha&alpha=100" + }, + "https://bioregistry.io/schema/#0000005": "6", + "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/iceberg.cime:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=6_CIME" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iceberg.cime" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biokc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/uniprot", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://www.uniprot.org/database/DB-0060" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD" + "@id": "https://www.uniprot.org/database/DB-0256" }, { - "@id": "http://edamontology.org/data_2620" + "@id": "https://www.uniprot.org/database/DB-0223" }, { - "@id": "http://www.wikidata.org/entity/P3853" + "@id": "https://www.uniprot.org/database/DB-0049" }, { - "@id": "http://aber-owl.net/ontology/RGD" + "@id": "https://www.uniprot.org/database/DB-0143" }, { - "@id": "https://registry.bio2kg.org/resource/rgd" + "@id": "https://www.uniprot.org/database/DB-0139" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd" + "@id": "https://www.uniprot.org/database/DB-0205" }, { - "@id": "https://registry.identifiers.org/registry/rgd" + "@id": "https://www.uniprot.org/database/DB-0119" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD" + "@id": "https://www.uniprot.org/database/DB-0097" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD" + "@id": "https://www.uniprot.org/database/DB-0072" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD" + "@id": "https://www.uniprot.org/database/DB-0226" }, { - "@id": "https://www.re3data.org/repository/r3d100010417" + "@id": "https://www.uniprot.org/database/DB-0069" }, { - "@id": "https://fairsharing.org/FAIRsharing.pfg82t" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.uniprot.org/database/DB-0095" + }, { - "@value": "congenic rat" + "@id": "https://www.uniprot.org/database/DB-0144" }, { - "@value": "phenotype" + "@id": "https://www.uniprot.org/database/DB-0038" }, { - "@value": "faseb list" + "@id": "https://www.uniprot.org/database/DB-0084" }, { - "@value": "est" + "@id": "https://www.uniprot.org/database/DB-0042" }, { - "@value": "strain" + "@id": "https://www.uniprot.org/database/DB-0016" }, { - "@value": "recombinant inbred rat" + "@id": "https://www.uniprot.org/database/DB-0129" }, { - "@value": "genome" + "@id": "https://www.uniprot.org/database/DB-0005" }, { - "@value": "dna" + "@id": "https://www.uniprot.org/database/DB-0017" }, { - "@value": "quantitative genetics" + "@id": "https://www.uniprot.org/database/DB-0162" }, { - "@value": "mutant" + "@id": "https://www.uniprot.org/database/DB-0221" }, { - "@value": "immunology" + "@id": "https://www.uniprot.org/database/DB-0251" }, { - "@value": "genetic" + "@id": "https://www.uniprot.org/database/DB-0158" }, { - "@value": "gene" + "@id": "https://www.uniprot.org/database/DB-0149" }, { - "@value": "human" + "@id": "https://www.uniprot.org/database/DB-0026" }, { - "@value": "molecular medicine" + "@id": "https://www.uniprot.org/database/DB-0160" }, { - "@value": "ontology" + "@id": "https://www.uniprot.org/database/DB-0028" }, { - "@value": "sequence" + "@id": "https://www.uniprot.org/database/DB-0152" }, { - "@value": "physiology" + "@id": "https://www.uniprot.org/database/DB-0068" }, { - "@value": "marker" + "@id": "https://www.uniprot.org/database/DB-0074" }, { - "@value": "behavior" + "@id": "https://www.uniprot.org/database/DB-0181" }, { - "@value": "translational medicine" + "@id": "https://www.uniprot.org/database/DB-0185" }, { - "@value": "variation" + "@id": "https://www.uniprot.org/database/DB-0197" }, { - "@value": "genotype" + "@id": "https://www.uniprot.org/database/DB-0030" }, { - "@value": "genomic" + "@id": "https://www.uniprot.org/database/DB-0147" }, { - "@value": "disease" + "@id": "https://www.uniprot.org/database/DB-0266" }, { - "@value": "rat" + "@id": "https://www.uniprot.org/database/DB-0140" }, { - "@value": "data analysis service" + "@id": "https://www.uniprot.org/database/DB-0148" }, { - "@value": "veterinary medicine" + "@id": "https://www.uniprot.org/database/DB-0177" }, { - "@value": "phenomics" + "@id": "https://www.uniprot.org/database/DB-0019" }, { - "@value": "genomics" + "@id": "https://www.uniprot.org/database/DB-0024" }, { - "@value": "model organism" + "@id": "https://www.uniprot.org/database/DB-0091" }, { - "@value": "knockout" + "@id": "https://www.uniprot.org/database/DB-0155" }, { - "@value": "organism supplier" + "@id": "https://www.uniprot.org/database/DB-0082" }, { - "@value": "function" + "@id": "https://www.uniprot.org/database/DB-0073" }, { - "@value": "pathway" + "@id": "https://www.uniprot.org/database/DB-0015" }, { - "@value": "inbred rat strain" + "@id": "https://www.uniprot.org/database/DB-0190" }, { - "@value": "map" + "@id": "https://www.uniprot.org/database/DB-0113" }, { - "@value": "mouse" + "@id": "https://www.uniprot.org/database/DB-0141" }, { - "@value": "biomedical science" + "@id": "https://www.uniprot.org/database/DB-0106" }, { - "@value": "qtl" + "@id": "https://www.uniprot.org/database/DB-0020" }, { - "@value": "comparative genomics" + "@id": "https://www.uniprot.org/database/DB-0214" }, { - "@value": "gold standard" + "@id": "https://www.uniprot.org/database/DB-0013" }, { - "@value": "proteomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/" - }, - "https://bioregistry.io/schema/#0000005": "7499841", - "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4,}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6443-9376" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "RGD" - }, - "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=7499841" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rgd" - } - }, - { - "@id": "https://bioregistry.io/registry/iuphar.ligand", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Guide to Pharmacology Ligand" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.uniprot.org/database/DB-0206" + }, { - "@id": "https://registry.identifiers.org/registry/iuphar.ligand" + "@id": "https://www.uniprot.org/database/DB-0062" }, { - "@id": "http://www.wikidata.org/entity/P595" + "@id": "https://www.uniprot.org/database/DB-0130" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand" + "@id": "https://www.uniprot.org/database/DB-0053" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB" + "@id": "https://www.uniprot.org/database/DB-0180" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all" - }, - "https://bioregistry.io/schema/#0000005": "1755", - "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://www.uniprot.org/database/DB-0079" + }, { - "@value": "IUPHAR_LIGAND" + "@id": "https://www.uniprot.org/database/DB-0031" }, { - "@value": "IUPHAR_LIGAND_ID" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=1755" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iuphar.ligand" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pv0ezt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/dlxc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOULIX lab-tested standard biological parts, in this case, full length constructs.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://www.uniprot.org/database/DB-0126" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.uniprot.org/database/DB-0239" }, { - "@id": "https://bioregistry.io/registry/dlx" + "@id": "https://www.uniprot.org/database/DB-0253" + }, + { + "@id": "https://www.uniprot.org/database/DB-0156" + }, + { + "@id": "https://www.uniprot.org/database/DB-0023" + }, + { + "@id": "https://www.uniprot.org/database/DB-0136" + }, + { + "@id": "https://www.uniprot.org/database/DB-0110" + }, + { + "@id": "https://www.uniprot.org/database/DB-0127" + }, + { + "@id": "https://www.uniprot.org/database/DB-0037" + }, + { + "@id": "https://www.uniprot.org/database/DB-0052" + }, + { + "@id": "https://www.uniprot.org/database/DB-0258" + }, + { + "@id": "https://www.uniprot.org/database/DB-0187" + }, + { + "@id": "https://www.uniprot.org/database/DB-0228" + }, + { + "@id": "https://www.uniprot.org/database/DB-0022" + }, + { + "@id": "https://www.uniprot.org/database/DB-0041" + }, + { + "@id": "https://www.uniprot.org/database/DB-0184" + }, + { + "@id": "https://www.uniprot.org/database/DB-0117" + }, + { + "@id": "https://www.uniprot.org/database/DB-0161" + }, + { + "@id": "https://www.uniprot.org/database/DB-0046" + }, + { + "@id": "https://www.uniprot.org/database/DB-0118" + }, + { + "@id": "https://www.uniprot.org/database/DB-0058" + }, + { + "@id": "https://www.uniprot.org/database/DB-0174" + }, + { + "@id": "https://www.uniprot.org/database/DB-0241" + }, + { + "@id": "https://www.uniprot.org/database/DB-0183" + }, + { + "@id": "https://www.uniprot.org/database/DB-0182" + }, + { + "@id": "https://www.uniprot.org/database/DB-0135" + }, + { + "@id": "https://www.uniprot.org/database/DB-0051" + }, + { + "@id": "https://www.uniprot.org/database/DB-0172" + }, + { + "@id": "https://www.uniprot.org/database/DB-0044" + }, + { + "@id": "https://www.uniprot.org/database/DB-0254" + }, + { + "@id": "https://www.uniprot.org/database/DB-0224" + }, + { + "@id": "https://www.uniprot.org/database/DB-0027" + }, + { + "@id": "https://www.uniprot.org/database/DB-0236" + }, + { + "@id": "https://www.uniprot.org/database/DB-0071" + }, + { + "@id": "https://www.uniprot.org/database/DB-0092" + }, + { + "@id": "https://www.uniprot.org/database/DB-0121" + }, + { + "@id": "https://www.uniprot.org/database/DB-0089" + }, + { + "@id": "https://www.uniprot.org/database/DB-0145" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Circular double stranded DNA sequences composed" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dlxc" + "@value": "UniProt Cross-ref database" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://doulix.com" + "@value": "https://www.uniprot.org/database/" }, - "https://bioregistry.io/schema/#0000005": "M77F7JM", - "https://bioregistry.io/schema/#0000006": "https://doulix.com/constructs/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{6,7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://doulix.com/constructs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://doulix.com/constructs/M77F7JM" + "https://bioregistry.io/schema/#0000005": { + "@value": "DB-0174" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dlxc" + "https://bioregistry.io/schema/#0000006": { + "@value": "https://www.uniprot.org/database/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6982-4660" } }, { - "@id": "https://bioregistry.io/registry/pharmgkb.drug", + "@id": "https://bioregistry.io/registry/bdsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/description": "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmGKB Drug" + "@value": "Bloomington Drosophila Stock Center" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2652" + "@id": "https://registry.identifiers.org/registry/bdsc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.drug" + "@value": "disease model" }, { - "@id": "http://www.wikidata.org/entity/P7001" + "@value": "deficiency" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "mutation" + }, { - "@value": "pharmacogenomics" + "@value": "germline" }, { - "@value": "drug" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pharmgkb.org/" - }, - "https://bioregistry.io/schema/#0000005": "PA448710", - "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/drug/$1", - "https://bioregistry.io/schema/#0000008": "^PA\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/drug/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pharmgkb.org/drug/PA448710" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmgkb.drug" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.pathway", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.", - "http://purl.org/dc/terms/isPartOf": [ + "@value": "deletion" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "somatic" }, { - "@id": "https://bioregistry.io/registry/kegg" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Pathways Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@value": "invertebrate" + }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY" + "@value": "transposon insertion" }, { - "@id": "https://registry.identifiers.org/registry/kegg.pathway" + "@value": "human disease model" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway" + "@value": "insertion" }, { - "@id": "http://edamontology.org/data_2343" + "@value": "fly" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@value": "faseb list" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.pathway" + "@value": "genetic construct" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY" + "@value": "scientist" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "pathway" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/kegg/pathway.html" - }, - "https://bioregistry.io/schema/#0000005": "rsk00410", - "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{2,4}\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@value": "stock" + }, { - "@value": "KEGG_PATHWAY" + "@value": "duplication" }, { - "@value": "KEGG-path" + "@value": "genetic" + }, + { + "@value": "protein trap" + }, + { + "@value": "genetic analysis" + }, + { + "@value": "transposon" + }, + { + "@value": "sequenced strain" + }, + { + "@value": "database" } ], - "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bdsc.indiana.edu/about/mission.html" + }, + "https://bioregistry.io/schema/#0000005": "33607", + "https://bioregistry.io/schema/#0000006": "https://bdsc.indiana.edu/stocks/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bdsc.indiana.edu/stocks/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kegg.jp/entry/rsk00410" + "@id": "https://bdsc.indiana.edu/stocks/33607" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.pathway" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/icd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "http://aber-owl.net/ontology/UBERON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ev", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://aber-owl.net/ontology/BCI-O", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vssch2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013263", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1554", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/icdo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/github", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/AIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/COVID19", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/hssp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "bdsc" } }, { - "@id": "https://bioregistry.io/registry/gcst", + "@id": "https://bioregistry.io/registry/hgnc.symbol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.", + "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GWAS Catalog" + "@value": "HGNC gene symbol" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gcst" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst" + "@id": "http://www.wikidata.org/entity/P353" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol" + }, + { + "@id": "https://registry.identifiers.org/registry/hgnc.symbol" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk" + "@id": "https://www.genenames.org/" }, - "https://bioregistry.io/schema/#0000005": "GCST000035", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gwas/studies/$1", - "https://bioregistry.io/schema/#0000008": "^GCST\\d{6}\\d*$", + "https://bioregistry.io/schema/#0000005": "DAPK1", + "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9_]+(\\@)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gwas/studies/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, + "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/gwas/studies/GCST000035" + "@id": "https://www.genenames.org/cgi-bin/gene_symbol_report?match=DAPK1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gcst" - } - }, - { - "@id": "http://aber-owl.net/ontology/ADW", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BKO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "hgnc.symbol" } }, { - "@id": "http://aber-owl.net/ontology/HANCESTRO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.CWzk3C", + "@id": "https://www.obofoundry.org/ontology/gaz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/PDUMDV", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ratmap", + "@id": "https://bioregistry.io/registry/cellosaurus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters", + "http://purl.org/dc/terms/description": "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/calipho-sib/cellosaurus" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Genome Database" + "@value": "Cellosaurus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP" + "@id": "https://registry.identifiers.org/registry/cellosaurus" }, { - "@id": "https://registry.bio2kg.org/resource/ratmap" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@id": "https://www.re3data.org/repository/r3d100013293" }, { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ratmap.org" - }, - "https://bioregistry.io/schema/#0000005": "5", - "https://bioregistry.io/schema/#0000006": "http://ratmap.org/Showgene.php?gene_stable_id=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://ratmap.org/Showgene.php?gene_stable_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ratmap.org/Showgene.php?gene_stable_id=5" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ratmap" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/cao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology developed as part of the Chemical Analysis Metadata Project (ChAMP) as a resource to semantically annotate standards developed using the ChAMP platform. (source: CAO ontology)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Analysis Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://www.wikidata.org/entity/P3289" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/CAO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus" }, { - "@id": "http://aber-owl.net/ontology/CAO" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus" }, { - "@id": "https://fairsharing.org/FAIRsharing.wp0134" + "@id": "https://fairsharing.org/FAIRsharing.hkk309" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao" + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "phylogenetics" + "@value": "cell lines" }, { - "@value": "life science" + "@value": "ontologies" }, { - "@value": "genetics" + "@value": "ontology" }, { - "@value": "transport and kinetic data" + "@value": "life science" }, { - "@value": "characterisation data heat" + "@value": "thesaurus" }, { - "@value": "ontology" + "@value": "controlled vocabularies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://champ.stuchalk.domains.unf.edu" + "@id": "https://cellosaurus.org" }, - "https://bioregistry.io/schema/#0000005": "000064", - "https://bioregistry.io/schema/#0000006": "http://champ-project.org/images/ontology/cao.owl#CAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0440", + "https://bioregistry.io/schema/#0000006": "https://www.cellosaurus.org/CVCL_$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{4}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://champ.stuchalk.domains.unf.edu/images/ontology/cao.owl" + "@id": "https://github.com/calipho-sib/cellosaurus/raw/master/cellosaurus.obo" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2668-4821" + "@id": "https://orcid.org/0000-0003-2826-6444" }, - "https://bioregistry.io/schema/#0000024": "http://champ-project.org/images/ontology/cao.owl#CAO_", + "https://bioregistry.io/schema/#0000023": { + "@value": "CVCL" + }, + "https://bioregistry.io/schema/#0000024": "https://www.cellosaurus.org/CVCL_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://champ-project.org/images/ontology/cao.owl#CAO_000064" + "@id": "https://www.cellosaurus.org/CVCL_0440" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cao" + "@value": "cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XCO", + "@id": "https://fairsharing.org/FAIRsharing.pdwqcr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/dlx", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/nlx.inv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/dlxc" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/registry/dlxb" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } - ] - }, - { - "@id": "https://bioregistry.io/registry/venom", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Veterinary Nomenclature" + "@value": "NIF Standard Ontology: Investigations" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "data analysis" + }, + { + "@value": "funding agencies" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://venomcoding.org/" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, - "https://bioregistry.io/schema/#0000005": "12969", + "https://bioregistry.io/schema/#0000005": "90901", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/vbo" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5628-4194" + "@id": "https://orcid.org/0000-0002-7509-4801" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "venom" - } - }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXINV" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_90901" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.inv" + } + }, { - "@id": "https://www.obofoundry.org/ontology/rxno", + "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/phosphosite.residue", + "@id": "http://aber-owl.net/ontology/RS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/empiar", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence.", + "http://purl.org/dc/terms/description": "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhosphoSite Residue" + "@value": "Electron Microscopy Public Image Archive" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE" + "@id": "https://fairsharing.org/FAIRsharing.dff3ef" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue" + "@id": "https://registry.identifiers.org/registry/empiar" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biology" }, { - "@id": "https://registry.identifiers.org/registry/phosphosite.residue" + "@value": "bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.phosphosite.org/homeAction.do" + "@id": "https://www.ebi.ac.uk/pdbe/emdb" }, - "https://bioregistry.io/schema/#0000005": "2842", - "https://bioregistry.io/schema/#0000006": "http://www.phosphosite.org/siteAction.do?id=$1", + "https://bioregistry.io/schema/#0000005": "10595", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.phosphosite.org/siteAction.do?id=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.phosphosite.org/siteAction.do?id=2842" + "@id": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10595" }, "https://bioregistry.io/schema/#0000029": { - "@value": "phosphosite.residue" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bc8ayj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ERO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "empiar" } }, { - "@id": "https://bioregistry.io/registry/co_327", + "@id": "https://bioregistry.io/registry/cio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016", + "http://purl.org/dc/terms/description": "An ontology to capture confidence information about annotations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/BgeeDB/confidence-information-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pearl millet ontology" + "@value": "Confidence Information Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_327" + "@id": "https://bioregistry.io/metaregistry/biocontext/CIO" }, { - "@id": "https://fairsharing.org/FAIRsharing.4e3qh9" + "@id": "https://bioportal.bioontology.org/ontologies/CIO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_327" + "@id": "http://aber-owl.net/ontology/CIO" + }, + { + "@id": "https://www.obofoundry.org/ontology/cio" + }, + { + "@id": "http://www.ontobee.org/ontology/CIO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e3t0yw" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -58126,2408 +52332,2510 @@ "@value": "ontology" }, { - "@value": "botany" + "@value": "obo" }, { - "@value": "agriculture" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet" + "@id": "https://github.com/BgeeDB/confidence-information-ontology" }, - "https://bioregistry.io/schema/#0000005": "0000095", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_327:$1", + "https://bioregistry.io/schema/#0000005": "0000040", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CIO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet/owl" + "@id": "http://purl.obolibrary.org/obo/cio.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nbc75e354242843bbb93bfd83febcc1f4" + "@id": "https://orcid.org/0000-0002-9415-5104" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_327:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CIO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_327:0000095" + "@id": "http://purl.obolibrary.org/obo/CIO_0000040" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_327" - } - }, - { - "@id": "_:Nbc75e354242843bbb93bfd83febcc1f4", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010180", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "cio" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo", + "@id": "https://bioportal.bioontology.org/ontologies/TEDDY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF", + "@id": "https://registry.identifiers.org/registry/hdr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO", + "@id": "https://registry.bio2kg.org/resource/cas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/bioregistry.registry", + "@id": "https://bioregistry.io/registry/proco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Bioregistry's meta-registry", + "http://purl.org/dc/terms/description": "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/proco-ontology/PROCO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioregistry Metaregistry" + "@value": "Process Chemistry Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "data science" + "@id": "https://www.obofoundry.org/ontology/proco" }, { - "@value": "metaregistry" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco" }, { - "@value": "data integration" + "@id": "http://www.ontobee.org/ontology/PROCO" }, { - "@value": "registry" + "@id": "http://aber-owl.net/ontology/PROCO" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioregistry.io/metaregistry/" - }, - "https://bioregistry.io/schema/#0000005": "miriam", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/miriam" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bioregistry.registry" - } - }, - { - "@id": "https://bioregistry.io/registry/srao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/fairsharing" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "obo" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/FAIRsharing/subject-ontology" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/proco-ontology/PROCO" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIRsharing Subject Ontology" + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PROCO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/proco.owl" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b1xD9f" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "earth science" - }, - { - "@value": "computer science" - }, - { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "natural science" + "@id": "https://bioregistry.io/registry/pato" }, { - "@value": "environmental science" + "@id": "https://bioregistry.io/registry/sbo" }, { - "@value": "agriculture" + "@id": "https://bioregistry.io/registry/ro" }, { - "@value": "metascience" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@value": "humanities" + "@id": "https://bioregistry.io/registry/obi" }, { - "@value": "topics" + "@id": "https://bioregistry.io/registry/cheminf" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/FAIRsharing/subject-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000400", - "https://bioregistry.io/schema/#0000006": "http://www.fairsharing.org/ontology/subject/SRAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/FAIRsharing/subject-ontology/master/releases/SRAO.owl" - }, - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" + "@id": "https://orcid.org/0000-0002-8786-1756" }, - "https://bioregistry.io/schema/#0000024": "http://www.fairsharing.org/ontology/subject/SRAO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PROCO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.fairsharing.org/ontology/subject/SRAO_0000400" + "@id": "http://purl.obolibrary.org/obo/PROCO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "srao" + "@value": "proco" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao", + "@id": "http://www.ontobee.org/ontology/RS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://orcid.org/0000-0001-9921-8234", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Georgeta Bordea" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "georgeta.bordea@u-bordeaux.fr" + } + }, + { + "@id": "https://registry.identifiers.org/registry/erm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt", + "@id": "https://cropontology.org/ontology/CO_365", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://orcid.org/0000-0002-7696-731X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Liliana Andres Hernandez" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "l.andres.hernandez.18@student.scu.edu.au" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG", + "@id": "http://aber-owl.net/ontology/PLANP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/hp", + "@id": "http://www.wikidata.org/entity/P299", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://aber-owl.net/ontology/FaBiO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/icldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.", + "http://purl.org/dc/terms/description": "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/human-phenotype-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Phenotype Ontology" + "@value": "Insect Cell Line Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPO" - }, - { - "@id": "https://registry.identifiers.org/registry/hp" - }, - { - "@id": "http://www.wikidata.org/entity/P3841" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kbtt7f" - }, - { - "@id": "http://www.ontobee.org/ontology/HP" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HP_O" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://entomology.ca.uky.edu/aginsectcellsdatabase" + }, + "https://bioregistry.io/schema/#0000005": "64ba", + "https://bioregistry.io/schema/#0000006": "https://entomology.ca.uky.edu/content/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2212-4771" + }, + "https://bioregistry.io/schema/#0000024": "https://entomology.ca.uky.edu/content/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://entomology.ca.uky.edu/content/64ba" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "icldb" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.33yggg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://aber-owl.net/ontology/MIRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gudmap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/iceberg", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339" + "@id": "https://bioregistry.io/registry/iceberg.element" }, { - "@id": "https://www.obofoundry.org/ontology/hp" + "@id": "https://bioregistry.io/registry/iceberg.cime" }, { - "@id": "http://aber-owl.net/ontology/HP_O" + "@id": "https://bioregistry.io/registry/iceberg.ime" }, { - "@id": "https://bartoc.org/en/node/1937" + "@id": "https://bioregistry.io/registry/iceberg.family" } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "phenomics" - }, + ] + }, + { + "@id": "https://www.obofoundry.org/ontology/oba", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/lrg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Locus Reference Genomic" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/lrg" }, { - "@value": "genetics" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/metaregistry/biocontext/LRG" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.human-phenotype-ontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "0011140", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hp.owl" + "@id": "http://www.lrg-sequence.org/" }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/maxo" - }, - { - "@id": "https://bioregistry.io/registry/chiro" - }, - { - "@id": "https://bioregistry.io/registry/scdo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5316-1399" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "hpo" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HP_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/lrg:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HP_0011140" + "@id": "http://ftp.ebi.ac.uk/pub/databases/lrgex/1.xml" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hp" + "@value": "lrg" } }, { - "@id": "http://www.wikidata.org/entity/P638", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec", + "@id": "https://fairsharing.org/FAIRsharing.mp0rwf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico", + "@id": "https://bioportal.bioontology.org/ontologies/EHDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/hom", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/unigene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.", + "http://purl.org/dc/terms/description": "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BgeeDB/homology-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Homology Ontology" + "@value": "UniGene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOM" - }, - { - "@id": "http://aber-owl.net/ontology/HOM" + "@id": "https://registry.bio2kg.org/resource/unigene" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HOM" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene" }, { - "@id": "http://www.ontobee.org/ontology/HOM" + "@id": "https://fairsharing.org/FAIRsharing.ge1c3p" }, { - "@id": "https://fairsharing.org/FAIRsharing.efv7gw" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom" + "@id": "https://www.re3data.org/repository/r3d100010774" }, { - "@id": "https://www.obofoundry.org/ontology/hom" + "@id": "https://registry.identifiers.org/registry/unigene" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "dna" + }, + { + "@value": "protein" }, { "@value": "life science" }, { - "@value": "obo" + "@value": "gene" }, { - "@value": "ontology" + "@value": "gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/BgeeDB/homology-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000049", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HOM_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hom.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" + "@id": "http://www.ncbi.nlm.nih.gov/unigene" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HOM_", + "https://bioregistry.io/schema/#0000005": "4900", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HOM_0000049" + "@id": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=4900" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hom" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/esldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1578", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "unigene" } }, { - "@id": "http://aber-owl.net/ontology/ICF", + "@id": "http://aber-owl.net/ontology/UPHENO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6bc7h9", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.bio2kg.org/resource/ecogene", + "@id": "https://bioportal.bioontology.org/ontologies/GEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/geo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0003-1725-179X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matthias König" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "konigmatt@googlemail.com" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://aber-owl.net/ontology/CTCAE", + "@id": "http://www.ontobee.org/ontology/UPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.obofoundry.org/ontology/mod", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME", + "@id": "https://bioregistry.io/metaregistry/biocontext/rdf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/cl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-9950-5209", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Richard Cyganiak" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "richard@cyganiak.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://www.ontobee.org/ontology/PSO", + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.e7skwg", + "@id": "https://fairsharing.org/FAIRsharing.99da5f", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/LABO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/OGI", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/hmdb", + "@id": "https://registry.identifiers.org/registry/ga4ghdos", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.uniprot.org/database/DB-0251", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/illumina.probe", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0001-5985-7429", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Illumina Probe Identifier" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "transcriptomics" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt" + "@value": "Colin Batchelor" }, - "https://bioregistry.io/schema/#0000005": "ILMN_129894", - "https://bioregistry.io/schema/#0000008": "^ILMN_\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "illumina.probe" - } + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "batchelorc@rsc.org" + }, + { + "@value": "BatchelorC@rsc.org" + } + ] }, { - "@id": "http://www.wikidata.org/entity/P3860", + "@id": "http://aber-owl.net/ontology/ENVO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/PRIDE", + "@id": "https://registry.bio2kg.org/resource/vhog", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/PLANA", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte", + "@id": "https://registry.bio2kg.org/resource/innatedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino", + "@id": "http://aber-owl.net/ontology/ICDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/biro", + "@id": "https://bioregistry.io/registry/mirbase.mature", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively.", + "http://purl.org/dc/terms/description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/biro" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bibliographic Reference Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.99da5f" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "miRBase mature miRNA" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature" + }, + { + "@id": "https://registry.identifiers.org/registry/mirbase.mature" + }, + { + "@id": "https://registry.bio2kg.org/resource/mirbase.mature" + }, + { + "@id": "http://www.wikidata.org/entity/P2871" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "sequence" + }, + { + "@value": "nucleotide" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/biro" + "@id": "http://www.mirbase.org/" }, - "https://bioregistry.io/schema/#0000005": "BibliographicRecord", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/biro/$1", + "https://bioregistry.io/schema/#0000005": "MIMAT0046872", + "https://bioregistry.io/schema/#0000006": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1", + "https://bioregistry.io/schema/#0000008": "^MIMAT\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" + "https://bioregistry.io/schema/#0000023": { + "@value": "MIRBASEM" }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/biro/", + "https://bioregistry.io/schema/#0000024": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/biro/BibliographicRecord" + "@id": "http://mirbase.org/cgi-bin/mature.pl?mature_acc=MIMAT0046872" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biro" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "mirbase.mature" } }, { - "@id": "https://bioregistry.io/registry/rxnorm", + "@id": "https://bioregistry.io/registry/doi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.", + "http://purl.org/dc/terms/description": "The Digital Object Identifier System is for identifying content objects in the digital environment.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RxNorm" + "@value": "Digital Object Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/RXNORM" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi" }, { - "@id": "http://aber-owl.net/ontology/RXNORM" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOI" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM" + "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88" + "@id": "https://registry.identifiers.org/registry/doi" }, { - "@id": "https://fairsharing.org/FAIRsharing.36pf8q" + "@id": "https://registry.bio2kg.org/resource/doi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi" }, { - "@id": "http://www.wikidata.org/entity/P3345" + "@id": "https://fairsharing.org/FAIRsharing.hFLKCn" + }, + { + "@id": "http://edamontology.org/data_1188" + }, + { + "@id": "http://www.wikidata.org/entity/P356" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "preclinical studies" + "@value": "bibliography" }, { - "@value": "ontology" + "@value": "knowledge and information systems" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/rxnorm/" + "@id": "https://www.doi.org/" }, - "https://bioregistry.io/schema/#0000005": "221058", - "https://bioregistry.io/schema/#0000006": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{1,7}$", + "https://bioregistry.io/schema/#0000005": "10.1038/s41597-022-01807-3", + "https://bioregistry.io/schema/#0000006": "https://doi.org/$1", + "https://bioregistry.io/schema/#0000008": "^10.\\d{2,9}/.*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N11a4fc5962bd4af29b75e3ad1cf69ed3" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "RXCUI" - }, - "https://bioregistry.io/schema/#0000024": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=", + "https://bioregistry.io/schema/#0000024": "https://doi.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=221058" + "@id": "https://doi.org/10.1038/s41597-022-01807-3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rxnorm" + "@value": "doi" } }, { - "@id": "_:N11a4fc5962bd4af29b75e3ad1cf69ed3", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NLM Customer Service" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "custserv@nlm.nih.gov" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE", + "@id": "http://aber-owl.net/ontology/DERMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PW", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.b9znd5", + "@id": "https://registry.identifiers.org/registry/gramene.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO", + "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LPT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.h2wrt2", + "@id": "https://registry.identifiers.org/registry/door", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dbprobe", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ctwd7b", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON", + "@id": "https://registry.bio2kg.org/resource/cryptodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-4142-7153", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sabrina Toro" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Sabrina@tislab.org" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/geogeo", + "@id": "https://www.obofoundry.org/ontology/nmr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/bgee", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/xpo", + "@id": "https://bioportal.bioontology.org/ontologies/ECG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010153", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/gcst", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.", + "http://purl.org/dc/terms/description": "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/xenopus-phenotype-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Xenopus Phenotype Ontology" + "@value": "GWAS Catalog" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/XPO" - }, - { - "@id": "http://aber-owl.net/ontology/XPO" - }, - { - "@id": "https://www.obofoundry.org/ontology/xpo" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XPO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/gcst" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/xenopus-phenotype-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0100002", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/xpo.owl" + "@id": "https://www.ebi.ac.uk" }, + "https://bioregistry.io/schema/#0000005": "GCST000035", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gwas/studies/$1", + "https://bioregistry.io/schema/#0000008": "^GCST\\d{6}\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/xao" - }, - { - "@id": "https://bioregistry.io/registry/iao" - }, - { - "@id": "https://bioregistry.io/registry/pato" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9611-1279" + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gwas/studies/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XPO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/XPO_0100002" + "@id": "https://www.ebi.ac.uk/gwas/studies/GCST000035" }, "https://bioregistry.io/schema/#0000029": { - "@value": "xpo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "gcst" } }, { - "@id": "https://bioregistry.io/registry/bioproject", + "@id": "https://bioregistry.io/registry/iuphar.ligand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.", + "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioProject" + "@value": "Guide to Pharmacology Ligand" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bioproject" + "@id": "https://registry.identifiers.org/registry/iuphar.ligand" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB" }, { - "@id": "https://fairsharing.org/FAIRsharing.aqhv1y" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand" }, { - "@id": "https://www.re3data.org/repository/r3d100013330" + "@id": "http://www.wikidata.org/entity/P595" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/bioproject" + "@id": "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all" }, - "https://bioregistry.io/schema/#0000005": "PRJDB3", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1", - "https://bioregistry.io/schema/#0000008": "^PRJ[DEN][A-Z]\\d+$", + "https://bioregistry.io/schema/#0000005": "1755", + "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/bioproject/?term=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "IUPHAR_LIGAND" + }, + { + "@value": "IUPHAR_LIGAND_ID" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB3" + "@id": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=1755" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bioproject" + "@value": "iuphar.ligand" } }, { - "@id": "http://aber-owl.net/ontology/ECOCORE", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/niaid.chemdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/SMART", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://edamontology.org/data_2657", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/signor.relation", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ID in NIAID ChemDB", + "http://purl.org/dc/terms/description": "Identifiers for relationships between proteins and complexes, along with their type and provenance", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/signor" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SIGNOR Relation" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein-protein interactions" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://signor.uniroma2.it" + }, + "https://bioregistry.io/schema/#0000005": "SIGNOR-252737", + "https://bioregistry.io/schema/#0000008": "^SIGNOR-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "signor.relation" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bko", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIAID ChemDB ID" + "@value": "SBGN Bricks data and ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P2065" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/BKO" + }, + { + "@id": "http://aber-owl.net/ontology/BKO" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://chemdb.niaid.nih.gov" + "@id": "http://www.sbgnbricks.org/" + }, + "https://bioregistry.io/schema/#0000005": "0000204", + "https://bioregistry.io/schema/#0000006": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/BKO/1/bko.owl" }, - "https://bioregistry.io/schema/#0000005": "112081", - "https://bioregistry.io/schema/#0000006": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2118-035X" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=112081" + "@id": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:0000204" }, "https://bioregistry.io/schema/#0000029": { - "@value": "niaid.chemdb" + "@value": "bko" } }, { - "@id": "https://bioregistry.io/registry/biomodels.kisao", + "@id": "https://bioregistry.io/registry/clinvar", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.", + "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/clinvar.record" + }, "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SED-ML/KiSAO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kinetic Simulation Algorithm Ontology" + "@value": "ClinVar Variation" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.jcg19w" - }, - { - "@id": "https://www.obofoundry.org/ontology/kisao" + "@id": "http://www.wikidata.org/entity/P1929" }, { - "@id": "http://www.ontobee.org/ontology/KISAO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO" + "@id": "https://www.re3data.org/repository/r3d100013331" }, { - "@id": "https://registry.identifiers.org/registry/biomodels.kisao" + "@id": "https://registry.identifiers.org/registry/clinvar" }, { - "@id": "http://aber-owl.net/ontology/KISAO" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319" }, { - "@id": "https://registry.bio2kg.org/resource/kisao" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao" + "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar" }, { - "@id": "https://bioportal.bioontology.org/ontologies/KISAO" + "@id": "https://fairsharing.org/FAIRsharing.wx5r6f" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "genomics" }, { - "@value": "ontology" + "@value": "biomedical science" }, { - "@value": "computer science" + "@value": "clinical studies" }, { - "@value": "bioinformatics" + "@value": "preclinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SED-ML/KiSAO" + "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" }, - "https://bioregistry.io/schema/#0000005": "0000057", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/KISAO_$1", + "https://bioregistry.io/schema/#0000005": "12345", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/kisao.owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2605-5080" - }, "https://bioregistry.io/schema/#0000023": [ { - "@value": "biomodels.kisao" + "@value": "clinvar.variant" }, { - "@value": "kisao" + "@value": "clinvar.variation" } ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/KISAO_", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/clinvar/variation/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/KISAO_0000057" + "@id": "https://www.ncbi.nlm.nih.gov/clinvar/variation/12345" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biomodels.kisao" + "@value": "clinvar" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2ck3st", + "@id": "http://www.wikidata.org/entity/P1402", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.obofoundry.org/ontology/bootstrep", + "@id": "https://registry.bio2kg.org/resource/tred", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0002-9551-6370", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Melanie Courtot" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mcourtot@gmail.com" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/hbvar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia.", + "@id": "https://fairsharing.org/FAIRsharing.2sqcxs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A Database of Human Hemoglobin Variants and Thalassemias" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/hbvar" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://globin.cse.psu.edu/globin/hbvar" - }, - "https://bioregistry.io/schema/#0000005": "2526", - "https://bioregistry.io/schema/#0000006": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=2526" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hbvar" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/umbbd.compound", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/biostudies", + "@id": "https://bioregistry.io/registry/bioregistry", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.", + "http://purl.org/dc/terms/description": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/biopragmatics/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioStudies database" + "@value": "Bioregistry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/biostudies" + "@id": "https://bartoc.org/en/node/18951" }, { - "@id": "https://fairsharing.org/FAIRsharing.mtjvme" + "@id": "https://fairsharing.org/FAIRsharing.250a8c" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "cheminformatics" }, { - "@id": "https://www.re3data.org/repository/r3d100012627" + "@value": "computational biology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "ontology and terminology" + }, { - "@value": "biomedical science" + "@value": "bioinformatics" }, { "@value": "life science" + }, + { + "@value": "computational chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/biostudies/" + "@id": "https://bioregistry.io" }, - "https://bioregistry.io/schema/#0000005": "S-EPMC6266652", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biostudies/studies/$1", - "https://bioregistry.io/schema/#0000008": "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$", + "https://bioregistry.io/schema/#0000005": "bioregistry", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/registry/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biostudies/studies/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/registry/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/biostudies/studies/S-EPMC6266652" + "@id": "https://bioregistry.io/registry/bioregistry" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biostudies" + "@value": "bioregistry" } }, { - "@id": "http://www.ontobee.org/ontology/VIDO", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://aber-owl.net/ontology/ENM", + "@id": "http://www.wikidata.org/entity/P2275", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.obofoundry.org/ontology/loggerhead", + "@id": "https://registry.identifiers.org/registry/phosphopoint.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/charprot", + "@id": "http://aber-owl.net/ontology/ARO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/imsr_tac", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.", + "http://purl.org/dc/terms/description": "Supplier of mice for research purposes. [from RRID]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CharProt" + "@value": "Taconic Biosciences" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/charprot" + "@value": "transgenic" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT" + "@value": "model" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot" + "@value": "gene" + }, + { + "@value": "subject" + }, + { + "@value": "repository" + }, + { + "@value": "mice" + }, + { + "@value": "knockout" + }, + { + "@value": "genetic engineering" + }, + { + "@value": "supply" + }, + { + "@value": "strain" + }, + { + "@value": "research" + }, + { + "@value": "mouse" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.jcvi.org/charprotdb" + "@id": "https://www.taconic.com/" }, - "https://bioregistry.io/schema/#0000005": "CH_001923", - "https://bioregistry.io/schema/#0000006": "http://www.jcvi.org/charprotdb/index.cgi/view/$1", - "https://bioregistry.io/schema/#0000008": "^CH_\\d+$", + "https://bioregistry.io/schema/#0000005": "1178", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:IMSR_TAC_$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.jcvi.org/charprotdb/index.cgi/view/", + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:IMSR_TAC_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.jcvi.org/charprotdb/index.cgi/view/CH_001923" + "@id": "https://scicrunch.org/resolver/RRID:IMSR_TAC_1178" }, "https://bioregistry.io/schema/#0000029": { - "@value": "charprot" + "@value": "imsr_tac" } }, { - "@id": "https://bioregistry.io/registry/xl", + "@id": "https://bioregistry.io/registry/rdf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.", + "http://purl.org/dc/terms/description": "This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cross-linker reagents ontology" + "@value": "Resource Description Framework" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/XL" + "@id": "https://fairsharing.org/FAIRsharing.p77ph9" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XL" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/rdf" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl" + "@value": "subject agnostic" }, { - "@id": "http://www.ontobee.org/ontology/XL" + "@value": "computer science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.psidev.info/groups/controlled-vocabularies" - }, - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/xl.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "xl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NMR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NEMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/miapa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fe4816", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d064y6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d88s6e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0003-1384-116X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Barry Smith" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "phismith@buffalo.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/psi.mod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/cosmic.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COSMIC Cell Lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cancer.sanger.ac.uk/cell_lines/" + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns" }, - "https://bioregistry.io/schema/#0000005": "906801", - "https://bioregistry.io/schema/#0000006": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "RDF", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=906801" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cosmic.cell" - } - }, - { - "@id": "https://bioregistry.io/registry/flybrain.ndb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database of fly neurons and pathways with an associated 3D viewer.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyBrain Neuron Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://flybrain-ndb.virtualflybrain.org" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5699-0515" }, - "https://bioregistry.io/schema/#0000005": "10531", - "https://bioregistry.io/schema/#0000006": "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/flybrain.ndb:", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=10531&-find=-find.html" + "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#RDF" }, "https://bioregistry.io/schema/#0000029": { - "@value": "flybrain.ndb" + "@value": "rdf" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID", + "@id": "https://www.uniprot.org/database/DB-0136", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI", + "@id": "https://registry.identifiers.org/registry/datf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/mex", + "@id": "https://bioregistry.io/registry/dbg2introns", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A public place to process, interpret and share GC/MS metabolomics datasets.", + "http://purl.org/dc/terms/description": "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolome Express" + "@value": "DBG2 Introns" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEX" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex" + "@id": "https://registry.bio2kg.org/resource/mgiid" }, { - "@id": "https://registry.identifiers.org/registry/mex" + "@id": "https://registry.identifiers.org/registry/dbg2introns" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "dna" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.metabolome-express.org/" + "@id": "http://webapps2.ucalgary.ca/~groupii/" }, - "https://bioregistry.io/schema/#0000005": "36", - "https://bioregistry.io/schema/#0000006": "https://www.metabolome-express.org/datasetview.php?datasetid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "Cu.me.I1", + "https://bioregistry.io/schema/#0000006": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1", + "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.metabolome-express.org/datasetview.php?datasetid=", + "https://bioregistry.io/schema/#0000024": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.metabolome-express.org/datasetview.php?datasetid=36" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mex" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0003-3499-8262", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alejandra Gonzalez-Beltran" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "alejandra.gonzalez.beltran@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/xuo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "XUO" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/hsapdv" + "@id": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=Cu.me.I1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "xuo" + "@value": "dbg2introns" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/hsapdv", + "@id": "https://bioregistry.io/registry/irefweb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Life cycle stages for Human", + "http://purl.org/dc/terms/description": "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Developmental Stages" + "@value": "iRefWeb" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.c6vhm3" - }, - { - "@id": "http://www.ontobee.org/ontology/HsapDv" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV" + "@id": "https://fairsharing.org/FAIRsharing.t31wcb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV" + "@id": "https://www.re3data.org/repository/r3d100012725" }, { - "@id": "https://www.obofoundry.org/ontology/hsapdv" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb" }, { - "@id": "http://aber-owl.net/ontology/HSAPDV" + "@id": "https://registry.bio2kg.org/resource/irefweb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv" + "@id": "https://registry.identifiers.org/registry/irefweb" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv" + "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" - }, - { - "@value": "developmental biology" + "@value": "life science" }, { - "@value": "obo" + "@value": "protein" }, { - "@value": "ontology" + "@value": "interaction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/HsapDv" - }, - "https://bioregistry.io/schema/#0000005": "0000194", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HsapDv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hsapdv.owl" + "@id": "http://wodaklab.org/iRefWeb/" }, + "https://bioregistry.io/schema/#0000005": "617102", + "https://bioregistry.io/schema/#0000006": "http://wodaklab.org/iRefWeb/interaction/show/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "HsapDv" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HsapDv_", + "https://bioregistry.io/schema/#0000024": "http://wodaklab.org/iRefWeb/interaction/show/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HsapDv_0000194" + "@id": "http://wodaklab.org/iRefWeb/interaction/show/617102" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hsapdv" + "@value": "irefweb" } }, { - "@id": "https://www.obofoundry.org/ontology/cheminf", + "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P4901", + "@id": "https://registry.identifiers.org/registry/ideal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/3dmet", + "@id": "http://www.ontobee.org/ontology/DDPHENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012850", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/tol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "3DMET is a database collecting three-dimensional structures of natural metabolites.", + "http://purl.org/dc/terms/description": "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "3D Metabolites" + "@value": "Tree of Life Web Project" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/3dmet" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5ab0n7" - }, - { - "@id": "https://registry.bio2kg.org/resource/3dmet" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET" - }, - { - "@id": "http://www.wikidata.org/entity/P2796" - }, - { - "@id": "http://edamontology.org/data_2635" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/tol" }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOL" }, { - "@value": "metabolite" + "@id": "http://www.wikidata.org/entity/P5221" }, { - "@value": "metabolomics" + "@id": "https://bartoc.org/en/node/400" }, { - "@value": "chemical" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.3dmet.dna.affrc.go.jp/" + "@id": "http://tolweb.org/tree/" }, - "https://bioregistry.io/schema/#0000005": "B00162", - "https://bioregistry.io/schema/#0000006": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1", - "https://bioregistry.io/schema/#0000008": "^B\\d{5}$", + "https://bioregistry.io/schema/#0000005": "98034", + "https://bioregistry.io/schema/#0000006": "http://tolweb.org/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=", + "https://bioregistry.io/schema/#0000023": { + "@value": "tol.webproj" + }, + "https://bioregistry.io/schema/#0000024": "http://tolweb.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=B00162" + "@id": "http://tolweb.org/98034" }, "https://bioregistry.io/schema/#0000029": { - "@value": "3dmet" + "@value": "tol" } }, { - "@id": "http://aber-owl.net/ontology/SIO", + "@id": "https://cropontology.org/ontology/CO_321", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "http://aber-owl.net/ontology/GSSO", + "@id": "https://fairsharing.org/FAIRsharing.vwc6bd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST", + "@id": "https://bioregistry.io/registry/tgn", + "@type": "https://bioregistry.io/schema/#0000001", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0001-9666-6285", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "R. Burke Squires" + "@value": "Getty Thesaurus of Geographic Names" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "burkesquires@gmail.com" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bartoc.org/en/node/109" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.getty.edu/research/tools/vocabularies/tgn/" + }, + "https://bioregistry.io/schema/#0000005": "1023371", + "https://bioregistry.io/schema/#0000006": "http://vocab.getty.edu/page/tgn/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://vocab.getty.edu/page/tgn/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://vocab.getty.edu/page/tgn/1023371" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tgn" } }, { - "@id": "https://registry.identifiers.org/registry/ncbigene", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7hxxc4", + "@id": "https://registry.bio2kg.org/resource/opb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD", + "@id": "https://bartoc.org/en/node/449", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://registry.identifiers.org/registry/google.patent", + "@id": "https://registry.identifiers.org/registry/neuromorpho", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/epd", + "@id": "http://www.ontobee.org/ontology/DISDRIV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim", + "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo", + "@id": "https://www.re3data.org/repository/r3d100013547", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/isfinder", + "@id": "https://registry.identifiers.org/registry/drugcentral", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/XAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.k008w7", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/minid", + "@id": "https://registry.identifiers.org/registry/biolink", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.brite", + "@id": "https://registry.identifiers.org/registry/civic.sid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/reo", + "@id": "https://bioregistry.io/registry/addexbio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/tis-lab/reagent-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Reagent Ontology" + "@value": "AddexBio cell line products" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.ontobee.org/ontology/REO" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/tis-lab/reagent-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000079", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/REO_$11", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/tis-lab/reagent-ontology/raw/master/reo/ontology_files/reo_pre-merged_or_reasoned_files/reo_reasoned_9-6-12.owl" + "@id": "https://www.addexbio.com/productshow?id=4" }, + "https://bioregistry.io/schema/#0000005": "C0020004/4992", + "https://bioregistry.io/schema/#0000006": "https://www.addexbio.com/productdetail?pid=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1048-5019" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/reo:", + "https://bioregistry.io/schema/#0000024": "https://www.addexbio.com/productdetail?pid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/REO_00000791" + "@id": "https://www.addexbio.com/productdetail?pid=C0020004/4992" }, "https://bioregistry.io/schema/#0000029": { - "@value": "reo" + "@value": "addexbio" } }, { - "@id": "https://www.re3data.org/repository/r3d100010906", + "@id": "https://bioportal.bioontology.org/ontologies/NDFRT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } + "@id": "https://bioregistry.io/registry/fossilworks", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/fossilworks.journal" + }, + { + "@id": "https://bioregistry.io/registry/fossilworks.taxon" + } + ] }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } + "@id": "https://bioregistry.io/registry/nif", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/nif.grossanatomy" + }, + { + "@id": "https://bioregistry.io/registry/nlx.cell" + }, + { + "@id": "https://bioregistry.io/registry/nif.dysfunction" + }, + { + "@id": "https://bioregistry.io/registry/nlx.dys" + }, + { + "@id": "https://bioregistry.io/registry/nif.cell" + }, + { + "@id": "https://bioregistry.io/registry/neurolex" + }, + { + "@id": "https://bioregistry.io/registry/nlx.org" + }, + { + "@id": "https://bioregistry.io/registry/nlx.mol" + }, + { + "@id": "https://bioregistry.io/registry/nlx.chem" + }, + { + "@id": "https://bioregistry.io/registry/nlx.br" + }, + { + "@id": "https://bioregistry.io/registry/nlx.inv" + }, + { + "@id": "https://bioregistry.io/registry/nlx.sub" + }, + { + "@id": "https://bioregistry.io/registry/nlx.func" + }, + { + "@id": "https://bioregistry.io/registry/nlx.oen" + }, + { + "@id": "https://bioregistry.io/registry/nlx.anat" + }, + { + "@id": "https://bioregistry.io/registry/nif.std" + }, + { + "@id": "https://bioregistry.io/registry/nif.ext" + }, + { + "@id": "https://bioregistry.io/registry/nlx.qual" + }, + { + "@id": "https://bioregistry.io/registry/nlx.res" + } + ] }, { - "@id": "https://bioregistry.io/registry/idog", + "@id": "https://bioregistry.io/registry/fcsfree", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses.", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Resource for Domestic Dog" + "@value": "Fetal Calf Serum-Free Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://www.re3data.org/repository/r3d100012176" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ngdc.cncb.ac.cn/idog/" + "@id": "https://fcs-free.org" }, - "https://bioregistry.io/schema/#0000005": "4", - "https://bioregistry.io/schema/#0000006": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "240-17-488-3-4-12", + "https://bioregistry.io/schema/#0000006": "https://fcs-free.org/fcs-database?$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9922-9723" - }, - "https://bioregistry.io/schema/#0000024": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=", + "https://bioregistry.io/schema/#0000024": "https://fcs-free.org/fcs-database?", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=4" + "@id": "https://fcs-free.org/fcs-database?240-17-488-3-4-12" }, "https://bioregistry.io/schema/#0000029": { - "@value": "idog" + "@value": "fcsfree" } }, { - "@id": "https://bioregistry.io/registry/gramene.reference", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Literature references in Gramene", + "@id": "https://registry.identifiers.org/registry/mgi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene Reference" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org" - }, - "https://bioregistry.io/schema/#0000005": "6200", - "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/literature/pub_search?ref_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "gramene.ref" - }, - "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/literature/pub_search?ref_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gramene.org/db/literature/pub_search?ref_id=6200" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.reference" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6b77ac", + "@id": "https://fairsharing.org/FAIRsharing.mm72as", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "http://edamontology.org/data_2756", + "@id": "https://bioregistry.io/registry/atol", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P7718", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/arrayexpress.platform", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Animal Trait Ontology for Livestock" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.wsfk5z" + }, + { + "@id": "http://aber-owl.net/ontology/ATOL" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ATOL" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/ATOL" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "animal husbandry" + }, + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "agriculture" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.atol-ontology.com" + }, + "https://bioregistry.io/schema/#0000005": "0002233", + "https://bioregistry.io/schema/#0000006": "http://opendata.inra.fr/ATOL/ATOL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8310-5195" + }, + "https://bioregistry.io/schema/#0000024": "http://opendata.inra.fr/ATOL/ATOL_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://opendata.inra.fr/ATOL/ATOL_0002233" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "atol" } }, { - "@id": "https://www.obofoundry.org/ontology/resid", + "@id": "https://bioregistry.io/registry/clingene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The allele registry provides and maintains identifiers for genetic variants", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/collection/0000006", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF." + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ClinGen Allele Registry" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/bido" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/registry/frapo" + "@value": "alleles" }, { - "@id": "https://bioregistry.io/registry/cito" - }, + "@value": "mutations" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://reg.clinicalgenome.org" + }, + "https://bioregistry.io/schema/#0000005": "CA981206459", + "https://bioregistry.io/schema/#0000006": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1", + "https://bioregistry.io/schema/#0000008": "^CA\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "CAID" + }, + "https://bioregistry.io/schema/#0000024": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA981206459" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "clingene" + } + }, + { + "@id": "https://bioregistry.io/registry/protclustdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ProtClustDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/datacite" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB" }, { - "@id": "https://bioregistry.io/registry/biro" + "@id": "https://fairsharing.org/FAIRsharing.da493y" }, { - "@id": "https://bioregistry.io/registry/c4o" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb" }, { - "@id": "https://bioregistry.io/registry/fabio" + "@id": "https://registry.bio2kg.org/resource/protclustdb" }, { - "@id": "https://bioregistry.io/registry/puro" - }, + "@id": "https://registry.identifiers.org/registry/protclustdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/pso" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/pwo" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/doco" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/deo" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/scoro" + "@value": "genetics" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SPAR Ontologies" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters" + }, + "https://bioregistry.io/schema/#0000005": "O80725", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "protclustdb" } }, { - "@id": "https://registry.bio2kg.org/resource/homologene", + "@id": "http://aber-owl.net/ontology/PECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/FPLX", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride", + "@id": "https://bioregistry.io/registry/bbkg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Blue Brain Project's published data as knowledge graphs and Web Studios.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Blue Brain Project Knowledge Graph" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/bbkg" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://portal.bluebrain.epfl.ch" + }, + "https://bioregistry.io/schema/#0000005": "topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a", + "https://bioregistry.io/schema/#0000006": "https://bbp.epfl.ch/nexus/web/studios/public/$1", + "https://bioregistry.io/schema/#0000008": "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bbp.epfl.ch/nexus/web/studios/public/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bbkg" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS", + "@id": "https://bioregistry.io/registry/genecards.geneloc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Location" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/geneloc" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://genecards.weizmann.ac.il/geneloc/" + }, + "https://bioregistry.io/schema/#0000005": "17503", + "https://bioregistry.io/schema/#0000006": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=17503" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genecards.geneloc" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FLOPO", + "@id": "http://aber-owl.net/ontology/BKO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/imex", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://orcid.org/0000-0003-1613-5981", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Heather Piwowar" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hpiwowar@gmail.com" - } + "@id": "https://bioregistry.io/registry/dlx", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/dlxb" + }, + { + "@id": "https://bioregistry.io/registry/dlxc" + } + ] }, { - "@id": "http://aber-owl.net/ontology/DERMO", + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers", + "@id": "http://aber-owl.net/ontology/MP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/umls", + "@id": "https://registry.identifiers.org/registry/bdsc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bartoc.org/en/node/17791", + "@id": "https://registry.identifiers.org/registry/bigg.model", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/ddanat", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram", + "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB", + "@id": "https://registry.bio2kg.org/resource/img.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/co_336", + "@id": "https://bioregistry.io/registry/rnao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Soybean Trait Dictionary in template v5 - IITA - July 2015", + "http://purl.org/dc/terms/description": "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/BGSU-RNA/rnao" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Soybean ontology" + "@value": "RNA ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_336" + "@id": "https://registry.bio2kg.org/resource/rnao" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_336" + "@id": "http://aber-owl.net/ontology/RNAO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336" + "@id": "https://fairsharing.org/FAIRsharing.kqt2h2" }, { - "@id": "https://fairsharing.org/FAIRsharing.j75srj" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao" + }, + { + "@id": "http://www.ontobee.org/ontology/RNAO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO" + }, + { + "@id": "https://www.obofoundry.org/ontology/rnao" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/RNAO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "biochemistry" }, { - "@value": "agriculture" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "life science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_336/Soybean" + "@id": "https://github.com/bgsu-rna/rnao" }, - "https://bioregistry.io/schema/#0000005": "0000339", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_336:$1", + "https://bioregistry.io/schema/#0000005": "0000128", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RNAO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_336/Soybean/owl" + "@id": "http://purl.obolibrary.org/obo/rnao.owl" }, - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6020-5919" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_336:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_336:0000339" + "@id": "https://orcid.org/0000-0001-5985-7429" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RNAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "co_336" + "@value": "rnao" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE", + "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/seed", + "@id": "https://bioregistry.io/registry/rdfs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.", + "http://purl.org/dc/terms/description": "RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The SEED;" + "@value": "RDF Schema" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED" + "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED" + "@id": "https://bioportal.bioontology.org/ontologies/RDFS" }, { - "@id": "https://registry.identifiers.org/registry/seed" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED" + "@id": "https://fairsharing.org/FAIRsharing.v9n3gk" }, { - "@id": "https://fairsharing.org/FAIRsharing.68b03f" + "@id": "http://aber-owl.net/ontology/RDFS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed" + "@value": "bioinformatics" + }, + { + "@value": "life science" + }, + { + "@value": "linguistics" + }, + { + "@value": "ontology and terminology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "earth science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://seed-viewer.theseed.org/seedviewer.cgi" + "@id": "https://www.w3.org/TR/rdf-schema/" + }, + "https://bioregistry.io/schema/#0000005": "label", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2000/01/rdf-schema#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://triplydb.com/w3c/rdfs/download.trig.gz" }, - "https://bioregistry.io/schema/#0000005": "Biotin_biosynthesis", - "https://bioregistry.io/schema/#0000006": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6450-7041" + }, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2000/01/rdf-schema#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=Biotin_biosynthesis" + "@id": "http://www.w3.org/2000/01/rdf-schema#label" }, "https://bioregistry.io/schema/#0000029": { - "@value": "seed" + "@value": "rdfs" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://orcid.org/0000-0002-9614-7976", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mauno Vihinen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mauno.vihinen@med.lu.se" } }, { - "@id": "https://bioregistry.io/registry/pwo", + "@id": "https://orcid.org/0000-0002-0381-3766", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bryce Mecum" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "brycemecum@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/sciflection", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity.", + "http://purl.org/dc/terms/description": "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/pwo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Publishing Workflow Ontology" + "@value": "Sciflection" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.c4e46c" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100013413" + }, + { + "@id": "https://registry.identifiers.org/registry/sciflection" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://sciformation.com/sciflection.html" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "https://bioregistry.io/schema/#0000005": "5ede4273-b26c-4ea4-adb7-3ce294ab3397", + "https://bioregistry.io/schema/#0000006": "https://sciflection.com/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://sciflection.com/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sciflection.com/5ede4273-b26c-4ea4-adb7-3ce294ab3397" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sciflection" + } + }, + { + "@id": "http://www.ontobee.org/ontology/BSPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/alfred", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vso", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/drks", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "German Clinical Trials Register" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/pwo" + "@id": "http://drks.de" }, - "https://bioregistry.io/schema/#0000005": "Workflow", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/pwo/$1", + "https://bioregistry.io/schema/#0000005": "DRKS00031815", + "https://bioregistry.io/schema/#0000006": "https://drks.de/search/en/trial/$1", + "https://bioregistry.io/schema/#0000008": "^DRKS\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/pwo/", + "https://bioregistry.io/schema/#0000024": "https://drks.de/search/en/trial/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/pwo/Workflow" + "@id": "https://drks.de/search/en/trial/DRKS00031815" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pwo" + "@value": "drks" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://cropontology.org/ontology/CO_360", + "@id": "https://www.re3data.org/repository/r3d100011330", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.wikidata.org/entity/P2689", + "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/medlineplus", + "@id": "https://bioregistry.io/schema/#0000025", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "An organization" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Organization" + } + }, + { + "@id": "https://bioregistry.io/registry/addgene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.", + "http://purl.org/dc/terms/description": "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MedlinePlus Health Topics" + "@value": "Addgene Plasmid Repository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/MEDLINEPLUS" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173" + "@id": "https://registry.identifiers.org/registry/addgene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus" + "@id": "https://www.re3data.org/repository/r3d100010741" }, { - "@id": "https://fairsharing.org/FAIRsharing.bf8dsb" + "@id": "https://fairsharing.org/FAIRsharing.8hcczk" }, { - "@id": "https://registry.identifiers.org/registry/medlineplus" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS" + "@id": "https://registry.bio2kg.org/resource/addgene" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "health science" + "@value": "sequence alignment" }, { - "@value": "medicine" + "@value": "life science" }, { - "@value": "ontology" + "@value": "bio.tools" }, { - "@value": "biomedical science" + "@value": "molecular biology" + }, + { + "@value": "repository" + }, + { + "@value": "faseb list" + }, + { + "@value": "plasmid" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nlm.nih.gov/medlineplus/" + "@id": "http://addgene.org/" }, - "https://bioregistry.io/schema/#0000005": "002804", - "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "50943", + "https://bioregistry.io/schema/#0000006": "http://addgene.org/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8b5f7ad63b6044cf8a17143270c8cbf1" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/medlineplus:", + "https://bioregistry.io/schema/#0000024": "http://addgene.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.nlm.nih.gov/medlineplus/ency/article/002804.htm" + "@id": "http://addgene.org/50943" }, "https://bioregistry.io/schema/#0000029": { - "@value": "medlineplus" - } - }, - { - "@id": "_:N8b5f7ad63b6044cf8a17143270c8cbf1", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NLM Customer Service" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "custserv@nlm.nih.gov" + "@value": "addgene" } }, { - "@id": "https://bioregistry.io/registry/ligandbook", + "@id": "https://bioregistry.io/registry/eu89h", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community.", + "http://purl.org/dc/terms/description": "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LigandBook" + "@value": "JRC Data Catalogue" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ligandbook" + "@id": "https://registry.identifiers.org/registry/eu89h" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook" + "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ligandbook.org/" + "@id": "http://data.jrc.ec.europa.eu/" }, - "https://bioregistry.io/schema/#0000005": "785", - "https://bioregistry.io/schema/#0000006": "https://ligandbook.org/package/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "jrc-eurl-ecvam-chemagora", + "https://bioregistry.io/schema/#0000006": "http://data.europa.eu/89h/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\-_]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ligandbook.org/package/", + "https://bioregistry.io/schema/#0000024": "http://data.europa.eu/89h/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ligandbook.org/package/785" + "@id": "http://data.europa.eu/89h/jrc-eurl-ecvam-chemagora" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ligandbook" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FIX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/dpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/uniprot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c7w81a", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "eu89h" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT", + "@id": "http://www.wikidata.org/entity/P4355", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro", + "@id": "https://bioregistry.io/registry/mco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Microbial Conditions Ontology is an ontology...", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Microbial Conditions Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/MCO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco" + }, + { + "@id": "http://aber-owl.net/ontology/MCO" + }, + { + "@id": "https://www.obofoundry.org/ontology/mco" + }, + { + "@id": "http://www.ontobee.org/ontology/MCO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/microbial-conditions-ontology/microbial-conditions-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000858", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MCO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mco.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/peco" + }, + { + "@id": "https://bioregistry.io/registry/micro" + }, + { + "@id": "https://bioregistry.io/registry/ncit" + }, + { + "@id": "https://bioregistry.io/registry/clo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/omit" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/zeco" + }, + { + "@id": "https://bioregistry.io/registry/omp" + }, + { + "@id": "https://bioregistry.io/registry/cl" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0142-5591" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MCO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MCO_0000858" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mco" } }, { - "@id": "http://aber-owl.net/ontology/PHIPO", + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/aeo", + "@id": "https://bioregistry.io/registry/aism", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology", + "http://purl.org/dc/terms/description": "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" + "@id": "https://github.com/insect-morphology/aism" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anatomical Entity Ontology" + "@value": "Ontology for the Anatomy of the Insect SkeletoMuscular system" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/aeo" - }, - { - "@id": "http://aber-owl.net/ontology/AEO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AEO" - }, - { - "@id": "http://www.ontobee.org/ontology/AEO" + "@id": "https://www.obofoundry.org/ontology/aism" }, { - "@id": "https://bartoc.org/en/node/181" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo" + "@id": "https://bioportal.bioontology.org/ontologies/AISM" }, { - "@id": "https://fairsharing.org/FAIRsharing.93ee19" + "@id": "http://www.ontobee.org/ontology/AISM" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AEO" + "@id": "http://aber-owl.net/ontology/AISM" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -60536,5577 +54844,5074 @@ }, { "@value": "ontology" - }, - { - "@value": "anatomy" - }, - { - "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology/" + "@id": "https://github.com/insect-morphology/aism" }, - "https://bioregistry.io/schema/#0000005": "0001017", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AEO_$1", + "https://bioregistry.io/schema/#0000005": "0000027", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AISM_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/aeo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/ehdaa2" + "@id": "http://purl.obolibrary.org/obo/aism.owl" }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/bspo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/caro" + } + ], + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nabf1e8c34e584cfa90b48e1410e90596" + "@id": "https://orcid.org/0000-0002-0851-6883" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "AEO_RETIRED" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AISM_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/AISM_0000027" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AEO_", "https://bioregistry.io/schema/#0000029": { - "@value": "aeo" + "@value": "aism" } }, { - "@id": "_:Nabf1e8c34e584cfa90b48e1410e90596", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Bard" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "J.Bard@ed.ac.uk" + "@id": "https://bioregistry.io/metaregistry/biocontext/ERO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/nomen", + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ADO", + "@id": "https://fairsharing.org/FAIRsharing.swbypy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL", + "@id": "https://registry.bio2kg.org/resource/plasmodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/GEMET", + "@id": "https://www.uniprot.org/database/DB-0026", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120", + "@id": "http://www.ontobee.org/ontology/ZFA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/topdb", + "@id": "https://bioportal.bioontology.org/ontologies/ATC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref", + "@id": "https://orcid.org/0000-0003-0595-5271", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vilma Hualla Mamani" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON", + "@id": "https://fairsharing.org/FAIRsharing.5949vn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/RO", + "@id": "https://registry.identifiers.org/registry/metanetx.chemical", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ADW", + "@id": "https://registry.bio2kg.org/resource/ecogene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/chickenqtldb", + "@id": "https://www.obofoundry.org/ontology/xao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/chembl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/pav", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/qtldb" - } - ], + "http://purl.org/dc/terms/description": "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "http://pav-ontology.github.io/pav/" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome Chicken QTL" + "@value": "Provenance, Authoring, and Versioning Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/chickenqtldb" + "@id": "https://bioportal.bioontology.org/ontologies/PAV" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/pav" }, { - "@id": "https://registry.identifiers.org/registry/chickenqtldb" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB" + "@id": "http://aber-owl.net/ontology/PAV" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.nbfwwv" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "subject agnostic" }, { - "@value": "dna" + "@value": "data management" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org/QTLdb" + "@id": "https://pav-ontology.github.io/pav/" + }, + "https://bioregistry.io/schema/#0000005": "authoredBy", + "https://bioregistry.io/schema/#0000006": "http://purl.org/pav/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z][a-zA-Z]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/PAV/3/pav.owl" }, - "https://bioregistry.io/schema/#0000005": "14362", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9842-9718" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/pav/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:14362" + "@id": "http://purl.org/pav/authoredBy" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chickenqtldb" + "@value": "pav" } }, { - "@id": "https://registry.identifiers.org/registry/noncodev4.rna", + "@id": "https://registry.identifiers.org/registry/vmhreaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.8ktkqy", + "@id": "https://bioportal.bioontology.org/ontologies/PHENX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/mamo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012362", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/github", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/SEPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/nextdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", + "http://purl.org/dc/terms/description": "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "http://sourceforge.net/p/mamo-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mathematical modeling ontology" + "@value": "Nematode Expression Pattern DataBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB" }, { - "@id": "http://www.ontobee.org/ontology/MAMO" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAMO" + "@id": "https://fairsharing.org/FAIRsharing.xz5m1a" }, { - "@id": "https://registry.identifiers.org/registry/mamo" - }, - { - "@id": "https://www.obofoundry.org/ontology/mamo" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.kbz5jh" + "@id": "https://registry.identifiers.org/registry/nextdb" }, { - "@id": "http://aber-owl.net/ontology/MAMO" + "@id": "https://registry.bio2kg.org/resource/nextdb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "gene expression" }, { - "@value": "systems biology" + "@value": "genome" }, { - "@value": "mathematics" + "@value": "dna" }, { - "@value": "computational biology" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sourceforge.net/p/mamo-ontology/wiki/Home/" - }, - "https://bioregistry.io/schema/#0000005": "0000026", - "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mamo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6309-7327" + "@id": "http://nematode.lab.nig.ac.jp/" }, - "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", + "https://bioregistry.io/schema/#0000005": "6b1", + "https://bioregistry.io/schema/#0000006": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_0000026" + "@id": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=6b1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mamo" + "@value": "nextdb" } }, { - "@id": "https://registry.identifiers.org/registry/mw.project", + "@id": "https://registry.bio2kg.org/resource/hbvar", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://edamontology.org/data_2639", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/bido", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF.", + "@id": "http://aber-owl.net/ontology/AIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/bido" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bibliometric Data Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.d7f0a9" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/bido" - }, - "https://bioregistry.io/schema/#0000005": "CategorialBibliometricData", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/bido/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/bido/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/bido/CategorialBibliometricData" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bido" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.re3data.org/repository/r3d100013051", + "@id": "http://aber-owl.net/ontology/SENSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.re3data.org/repository/r3d100013293", + "@id": "http://www.wikidata.org/entity/P2926", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV", + "@id": "http://aber-owl.net/ontology/GO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy", + "@id": "https://registry.bio2kg.org/resource/cl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/asap", + "@id": "https://registry.identifiers.org/registry/dailymed", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ecocyc", + "@id": "http://edamontology.org/data_1136", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/obv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.", + "http://purl.org/dc/terms/description": "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EcoCyc" + "@value": "Austrian Library Network" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.65dmtr" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011277" + "@id": "https://bartoc.org/en/node/20430" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc" + "@id": "https://registry.identifiers.org/registry/obv" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "biology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ecocyc.org/" + "@id": "https://www.obvsg.at/" }, - "https://bioregistry.io/schema/#0000005": "AICARTRANSIMPCYCLO-CPLX", - "https://bioregistry.io/schema/#0000006": "https://ecocyc.org/gene?id=$1", + "https://bioregistry.io/schema/#0000005": "AC00963334", + "https://bioregistry.io/schema/#0000006": "https://permalink.obvsg.at/$1", + "https://bioregistry.io/schema/#0000008": "^AC[0-9]{8}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ecocyc.org/gene?id=", + "https://bioregistry.io/schema/#0000024": "https://permalink.obvsg.at/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ecocyc.org/gene?id=AICARTRANSIMPCYCLO-CPLX" + "@id": "https://permalink.obvsg.at/AC00963334" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecocyc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.USxx0K", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "obv" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.re3data.org/repository/r3d100010245", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://orcid.org/0000-0002-8981-0442", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ekaterina Chuprikova" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ekaterina.chuprikova@eurac.edu" } }, { - "@id": "https://bioregistry.io/registry/gramene.protein", + "@id": "https://bioregistry.io/registry/unite", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene.", + "http://purl.org/dc/terms/description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene protein" + "@value": "Molecular database for the identification of fungi" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN" + "@id": "https://registry.identifiers.org/registry/unite" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein" + "@id": "https://registry.bio2kg.org/resource/unite" }, { - "@id": "https://registry.identifiers.org/registry/gramene.protein" + "@id": "https://www.re3data.org/repository/r3d100011316" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cnwx8c" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite" + }, + { + "@id": "http://edamontology.org/data_2390" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ecology" + }, + { + "@value": "taxonomy" + }, + { + "@value": "dna" + }, + { + "@value": "biodiversity" + }, + { + "@value": "genomics" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "metagenomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/" + "@id": "http://unite.ut.ee/" }, - "https://bioregistry.io/schema/#0000005": "78073", - "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/protein/protein_search?protein_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "UDB000691", + "https://bioregistry.io/schema/#0000006": "http://unite.ut.ee/bl_forw.php?nimi=$1", + "https://bioregistry.io/schema/#0000008": "^UDB\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "GR_PROTEIN" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5171-1668" }, - "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/protein/protein_search?protein_id=", + "https://bioregistry.io/schema/#0000024": "http://unite.ut.ee/bl_forw.php?nimi=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gramene.org/db/protein/protein_search?protein_id=78073" + "@id": "http://unite.ut.ee/bl_forw.php?nimi=UDB000691" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.protein" + "@value": "unite" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343", + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/fsnp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-8489-208X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Steven E. Wilson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "sewilson@lbl.gov" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/LABO", + "@id": "https://registry.bio2kg.org/resource/rex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/dg.5b0d", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.d5ff6e", + "@id": "https://fairsharing.org/FAIRsharing.j0fa1d", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB", + "@id": "https://registry.identifiers.org/registry/unipathway.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ngl", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/myco.tuber", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.recas1", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/dg.f82a1a", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA.", + "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NASA GeneLab" + "@value": "Kids First" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dg.f82a1a" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NGL" - }, - { - "@id": "https://registry.identifiers.org/registry/ngl" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://genelab-data.ndc.nasa.gov/genelab/" + "@id": "https://kidsfirstdrc.org" }, - "https://bioregistry.io/schema/#0000005": "GLDS-141", - "https://bioregistry.io/schema/#0000006": "https://genelab-data.ndc.nasa.gov/genelab/accession/$1", - "https://bioregistry.io/schema/#0000008": "^GLDS-\\d+$", + "https://bioregistry.io/schema/#0000005": "00026f50-858a-446b-8ed9-b0e3ecd7b20e", + "https://bioregistry.io/schema/#0000006": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://genelab-data.ndc.nasa.gov/genelab/accession/", + "https://bioregistry.io/schema/#0000024": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-141" + "@id": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/00026f50-858a-446b-8ed9-b0e3ecd7b20e" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ngl" + "@value": "dg.f82a1a" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FOBI", + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron", + "@id": "https://www.re3data.org/repository/r3d100013638", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/cazy", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P699", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/XL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HP_O", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-2346-5201", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Carbohydrate Active EnZYmes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/cazy" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012321" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy" - }, - { - "@id": "https://www.uniprot.org/database/DB-0136" - }, - { - "@id": "https://registry.bio2kg.org/resource/cazy" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ntyq70" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "glycomics" - }, - { - "@value": "life science" - }, - { - "@value": "classification" - }, - { - "@value": "polysaccharide" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cazy.org/" - }, - "https://bioregistry.io/schema/#0000005": "GT10", - "https://bioregistry.io/schema/#0000006": "http://www.cazy.org/$1.html", - "https://bioregistry.io/schema/#0000008": "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cazy:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cazy.org/GT10.html" + "@value": "Carissa Park" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cazy" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "caripark@iastate.edu" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/LOINC", + "@id": "https://www.re3data.org/repository/r3d100012344", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID", + "@id": "https://registry.identifiers.org/registry/doi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mr293q", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.bio2kg.org/resource/asrp", + "@id": "http://www.wikidata.org/entity/P11623", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FOVT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vita", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line", + "@id": "https://www.re3data.org/repository/r3d100011052", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2153", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EMAP", + "@id": "https://fairsharing.org/FAIRsharing.akmeb9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/kegg.orthology", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Orthology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/kegg.orthology" - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.orthology" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathway" - }, - { - "@value": "classification" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/ko.html" - }, - "https://bioregistry.io/schema/#0000005": "K00001", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^K\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/K00001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.orthology" + "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE", + "@id": "https://registry.identifiers.org/registry/dragondb.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON", + "@id": "https://registry.identifiers.org/registry/pmdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin", + "@id": "https://orcid.org/0000-0002-7696-731X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Liliana Andres Hernandez" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "l.andres.hernandez.18@student.scu.edu.au" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/disdriv", + "@id": "https://bioregistry.io/registry/bbtp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Drivers of human diseases including environmental, maternal and social exposures.", + "http://purl.org/dc/terms/description": "Input data and analysis results for the paper \"Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 ).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DiseaseOntology/DiseaseDriversOntology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Disease Drivers Ontology" + "@value": "Blue Brain Project Topological sampling Knowledge Graph" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/DISDRIV" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv" - }, - { - "@id": "http://www.ontobee.org/ontology/DISDRIV" - }, - { - "@id": "https://www.obofoundry.org/ontology/disdriv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.disease-ontology.org" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/bbtp" }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DISDRIV_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/disdriv.owl" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://portal.bluebrain.epfl.ch" }, + "https://bioregistry.io/schema/#0000005": "f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a", + "https://bioregistry.io/schema/#0000006": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1", + "https://bioregistry.io/schema/#0000008": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8910-9851" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DISDRIV_", + "https://bioregistry.io/schema/#0000024": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DISDRIV_0000000" + "@id": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a" }, "https://bioregistry.io/schema/#0000029": { - "@value": "disdriv" + "@value": "bbtp" } }, { - "@id": "https://bioregistry.io/registry/transyt", + "@id": "https://bioregistry.io/registry/cba", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.", + "http://purl.org/dc/terms/description": "CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Transport Systems Tracker" + "@value": "Chinese Biological Abstracts" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/transyt" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "bibliography" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.bio.di.uminho.pt/" + "@id": "http://www.cba.ac.cn" }, - "https://bioregistry.io/schema/#0000005": "TR0000001", - "https://bioregistry.io/schema/#0000006": "https://transyt.bio.di.uminho.pt/reactions/$1", - "https://bioregistry.io/schema/#0000008": "^T[A-Z]\\d{7}$", + "https://bioregistry.io/schema/#0000005": "375364", + "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/CBA/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://transyt.bio.di.uminho.pt/reactions/", + "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/CBA/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://transyt.bio.di.uminho.pt/reactions/TR0000001" + "@id": "https://europepmc.org/article/CBA/375364" }, "https://bioregistry.io/schema/#0000029": { - "@value": "transyt" + "@value": "cba" } }, { - "@id": "https://fairsharing.org/FAIRsharing.493qns", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/4dn.biosource", + "@id": "https://orcid.org/0000-0001-7203-8399", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sergio José Rodríguez Méndez" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "srodriguez142857@gmail.com" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010205", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/proteomicsdb.peptide", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases.", + "http://purl.org/dc/terms/description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "4D Nucleome Data Portal Biosource" + "@value": "ProteomicsDB Peptide" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/4dn" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.CugtbQ" + "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide" }, { - "@id": "https://registry.identifiers.org/registry/4dn" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.proteomicsdb.org/#peptideSearch" + }, + "https://bioregistry.io/schema/#0000005": "53504", + "https://bioregistry.io/schema/#0000006": "https://www.proteomicsdb.org/#human/proteinDetails/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.proteomicsdb.org/#human/proteinDetails/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.proteomicsdb.org/#human/proteinDetails/53504" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "proteomicsdb.peptide" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0044", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/funcbase.mouse", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FuncBase Mouse" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE" }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/funcbase.mouse" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://data.4dnucleome.org/biosources" + "@id": "http://func.mshri.on.ca/mouse/" }, - "https://bioregistry.io/schema/#0000005": "4DNSR73BT2A2", - "https://bioregistry.io/schema/#0000006": "https://data.4dnucleome.org/biosources/$1", - "https://bioregistry.io/schema/#0000008": "^4DN[A-Z]{2}[A-Z0-9]{7}$", + "https://bioregistry.io/schema/#0000005": "1351341", + "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "4DN" - }, - "https://bioregistry.io/schema/#0000024": "https://data.4dnucleome.org/biosources/", + "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://data.4dnucleome.org/biosources/4DNSR73BT2A2" + "@id": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/1351341" }, "https://bioregistry.io/schema/#0000029": { - "@value": "4dn.biosource" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "funcbase.mouse" } }, { - "@id": "https://bioregistry.io/registry/ssbd.project", + "@id": "https://bioregistry.io/registry/publons.publication", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.", + "http://purl.org/dc/terms/description": "identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "System Science of Biological Dynamics project" + "@value": "Publons publication" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P3431" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ssbd.riken.jp" + "@id": "https://publons.com" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://ssbd.riken.jp/database/project/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "507568", + "https://bioregistry.io/schema/#0000006": "https://publons.com/publon/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ssbd.riken.jp/database/project/", + "https://bioregistry.io/schema/#0000024": "https://publons.com/publon/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ssbd.riken.jp/database/project/1" + "@id": "https://publons.com/publon/507568" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ssbd.project" + "@value": "publons.publication" } }, { - "@id": "http://aber-owl.net/ontology/RS", + "@id": "https://registry.bio2kg.org/resource/bto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://orcid.org/0000-0002-5497-0243", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anita Bandrowski" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bandrow@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen", + "@id": "https://bioregistry.io/metaregistry/biocontext/NDC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pubchem.element", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/pubchem" - } - ], + "@id": "https://orcid.org/0000-0002-9551-6370", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubChem Element" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "chemistry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/periodic-table" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/element/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/element/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/element/1" + "@value": "Melanie Courtot" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.element" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biosample", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mcourtot@gmail.com" } }, { - "@id": "https://registry.bio2kg.org/resource/hpa", + "@id": "http://aber-owl.net/ontology/VSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.reaction", + "@id": "https://registry.bio2kg.org/resource/snornalbmedb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/insdc", + "@id": "https://bioregistry.io/registry/fivestars", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.", + "http://purl.org/dc/terms/description": "An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/fivestars" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nucleotide Sequence Database" + "@value": "Five Stars of Online Research Articles Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.6dfe9b" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/insdc" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc" - }, - { - "@id": "https://registry.identifiers.org/registry/insdc" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" + "@value": "subject agnostic" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/Genbank/" + "@id": "http://www.sparontologies.net/ontologies/fivestars" }, - "https://bioregistry.io/schema/#0000005": "X58356", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nuccore/$1", - "https://bioregistry.io/schema/#0000008": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "hasOpenAccessRating", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nuccore/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nuccore/X58356" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" }, "https://bioregistry.io/schema/#0000029": { - "@value": "insdc" + "@value": "fivestars" } }, { - "@id": "http://aber-owl.net/ontology/OBI", + "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb", + "@id": "http://www.wikidata.org/entity/P3951", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/bridgedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc.", + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BridgeDb Vocabulary" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bridgedb.org" - }, - "https://bioregistry.io/schema/#0000005": "hasPrimaryUriPattern", - "https://bioregistry.io/schema/#0000006": "http://vocabularies.bridgedb.org/ops#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://vocabularies.bridgedb.org/ops#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bridgedb" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/knapsack", + "@id": "https://bioregistry.io/registry/nif.std", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://purl.org/dc/terms/description": "NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KNApSAcK" + "@value": "NIF Standard Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK" + "@id": "http://aber-owl.net/ontology/NIFSTD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack" + "@id": "https://fairsharing.org/FAIRsharing.vgw1m6" }, { - "@id": "https://registry.identifiers.org/registry/knapsack" + "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "http://www.wikidata.org/entity/P2064" + "@value": "neuroscience" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.knapsackfamily.com/KNApSAcK/" + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "BAMSC981", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/$1", + "https://bioregistry.io/schema/#0000008": "^BAMSC\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/NIFSTD/23/nifstd.owl" }, - "https://bioregistry.io/schema/#0000005": "C00000001", - "https://bioregistry.io/schema/#0000006": "http://www.knapsackfamily.com/knapsack_core/information.php?word=$1", - "https://bioregistry.io/schema/#0000008": "^C\\d{8}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.knapsackfamily.com/knapsack_core/information.php?word=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NIFSTD" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.knapsackfamily.com/knapsack_core/information.php?word=C00000001" + "@id": "http://uri.neuinfo.org/nif/nifstd/BAMSC981" }, "https://bioregistry.io/schema/#0000029": { - "@value": "knapsack" + "@value": "nif.std" } }, { - "@id": "https://registry.identifiers.org/registry/bioportal", + "@id": "http://aber-owl.net/ontology/MESH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST", + "@id": "http://www.wikidata.org/entity/P1832", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://aber-owl.net/ontology/ordo", + "@id": "https://orcid.org/0000-0003-4525-7793", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Silvio C.E. Tosatto" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "silvio.tosatto@unipd.it" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/imr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/REX", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/probesanddrugs", + "@id": "https://bioregistry.io/registry/iro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Probes and Drugs" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P11199" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.probes-drugs.org" - }, - "https://bioregistry.io/schema/#0000005": "PD000596", - "https://bioregistry.io/schema/#0000006": "https://www.probes-drugs.org/compound/$1", - "https://bioregistry.io/schema/#0000008": "^PD\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5325-4934" + "@value": "Insect Resistance Ontology" }, - "https://bioregistry.io/schema/#0000024": "https://www.probes-drugs.org/compound/", + "https://bioregistry.io/schema/#0000005": "0000008", + "https://bioregistry.io/schema/#0000006": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.probes-drugs.org/compound/PD000596" + "@id": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:0000008" }, "https://bioregistry.io/schema/#0000029": { - "@value": "probesanddrugs" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/bspo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "iro" } }, { - "@id": "https://bioregistry.io/registry/sdap", + "@id": "https://bioregistry.io/registry/rnamod", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes.", + "http://purl.org/dc/terms/description": "A comprehensive listing of post-transcriptionally modified nucleosides from RNA -", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Structural Database of Allergenic Proteins" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/sdap" + "@value": "The RNA Modification Database" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "structural bioinformatcs" }, { - "@value": "structure" + "@value": "post-transcriptional modification" + }, + { + "@value": "rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://fermi.utmb.edu/SDAP" + "@id": "http://rna.rega.kuleuven.be/rnamods/" }, - "https://bioregistry.io/schema/#0000005": "610", - "https://bioregistry.io/schema/#0000006": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1", + "https://bioregistry.io/schema/#0000005": "051", + "https://bioregistry.io/schema/#0000006": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1", + "https://bioregistry.io/schema/#0000008": "^\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=", + "https://bioregistry.io/schema/#0000024": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?", "https://bioregistry.io/schema/#0000027": { - "@id": "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=610" + "@id": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?051" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sdap" + "@value": "rnamod" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/zinc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.", + "@id": "http://www.wikidata.org/entity/P932", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ZINC is not Commercial" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P2084" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010372" - }, - { - "@id": "https://registry.identifiers.org/registry/zinc" - }, + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/biocatalogue", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.location", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc" + "@id": "https://bioregistry.io/registry/uniprot" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://zinc15.docking.org/" - }, - "https://bioregistry.io/schema/#0000005": "ZINC1084", - "https://bioregistry.io/schema/#0000006": "http://zinc15.docking.org/substances/$1", - "https://bioregistry.io/schema/#0000008": "^(ZINC)?\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://zinc15.docking.org/substances/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://zinc15.docking.org/substances/ZINC1084" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "zinc" - } - }, - { - "@id": "https://bioregistry.io/registry/inaturalist.observation", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The identifier for an observation in iNaturalist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "iNaturalist Observation" + "@value": "UniProt Subcellular Locations" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P5683" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.inaturalist.org/observations" + "@id": "https://www.uniprot.org/locations/" }, - "https://bioregistry.io/schema/#0000005": "36010371", - "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/observations/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "SL-0002", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/locations/$1", + "https://bioregistry.io/schema/#0000008": "^SL-\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://rest.uniprot.org/locations/stream?compressed=true&format=obo&query=%28%2A%29" }, - "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/observations/", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "UniProtKB-SubCell" + }, + { + "@value": "UPLOC" + }, + { + "@value": "SP_SL" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/locations/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.inaturalist.org/observations/36010371" + "@id": "https://www.uniprot.org/locations/SL-0002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "inaturalist.observation" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/spd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "uniprot.location" } }, { - "@id": "https://registry.bio2kg.org/resource/uo", + "@id": "https://bioportal.bioontology.org/ontologies/MCCL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/hprd", + "@id": "https://bioregistry.io/registry/hinv.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.", + "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Protein Reference Database" + "@value": "H-InvDb Protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010978" - }, - { - "@id": "https://registry.bio2kg.org/resource/hprd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y2qws7" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein" }, { - "@id": "https://registry.identifiers.org/registry/hprd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN" }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/hinv.protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.hprd.org/" + "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" }, - "https://bioregistry.io/schema/#0000005": "00001", - "https://bioregistry.io/schema/#0000006": "http://www.hprd.org/protein/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "HIP000030660", + "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1", + "https://bioregistry.io/schema/#0000008": "^HIP\\d{9}(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9943-6127" - }, - "https://bioregistry.io/schema/#0000024": "http://www.hprd.org/protein/", + "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.hprd.org/protein/00001" + "@id": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=HIP000030660" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hprd" + "@value": "hinv.protein" } }, { - "@id": "https://registry.identifiers.org/registry/gsso", + "@id": "https://registry.identifiers.org/registry/gramene.taxonomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/virsirna", + "@id": "https://www.re3data.org/repository/r3d100013668", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CCO", + "@id": "https://fairsharing.org/FAIRsharing.10gr18", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/imex", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.", + "@id": "https://bioregistry.io/metaregistry/biocontext/GDC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Molecular Exchange" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/imex" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010669" - }, - { - "@id": "https://registry.bio2kg.org/resource/imex" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "interaction" - }, - { - "@value": "molecule" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.imexconsortium.org/" - }, - "https://bioregistry.io/schema/#0000005": "19210-3", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1", - "https://bioregistry.io/schema/#0000008": "^\\d+(-\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-19210-3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "imex" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/NIFCELL", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea", + "@id": "http://www.wikidata.org/entity/P661", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/civic.vgid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Variant Group" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.vgid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "16", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/variant_group/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/variant_group/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/variant_group/16" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.vgid" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/img.gene", + "@id": "https://registry.identifiers.org/registry/dragondb.allele", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/dctypes", + "@id": "https://bioregistry.io/registry/insdc.gcf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.", + "http://purl.org/dc/terms/description": "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dublin Core Types" + "@value": "Genome assembly database - RefSeq accessions" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes" + "@id": "https://registry.identifiers.org/registry/refseq.gcf" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dublincore.org/specifications/dublin-core/dcmi-terms/" + "@id": "https://www.ncbi.nlm.nih.gov/" }, - "https://bioregistry.io/schema/#0000005": "Collection", - "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/dcmitype/$1", + "https://bioregistry.io/schema/#0000005": "GCF_000001405", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/datasets/genome/$1", + "https://bioregistry.io/schema/#0000008": "^GCF_[0-9]{9}(\\.[0-9]+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/dcmitype/", + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/ncbi.assembly" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "insdc.gcf" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/datasets/genome/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/dc/dcmitype/Collection" + "@id": "https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dctypes" + "@value": "insdc.gcf" } }, { - "@id": "https://bioregistry.io/registry/tred", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present.", + "@id": "http://www.ontobee.org/ontology/MOP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Transcriptional Regulatory Element Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/tred" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "regulation" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rulai.cshl.edu/TRED" - }, - "https://bioregistry.io/schema/#0000005": "21552", - "https://bioregistry.io/schema/#0000006": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=21552" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tred" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME", + "@id": "https://registry.identifiers.org/registry/bigg.compartment", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0003-1355-892X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Richard Scheuermann" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rscheuermann@jcvi.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CLO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/sharkipedia", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/sharkipedia.trait" - }, - { - "@id": "https://bioregistry.io/registry/sharkipedia.trend" - }, - { - "@id": "https://bioregistry.io/registry/sharkipedia.species" - } - ] + "@id": "https://orcid.org/0000-0002-8411-3226", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stefanie Seltmann" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "stefanie.seltmann@ibmt.fraunhofer.de" + } }, { - "@id": "https://bioregistry.io/collection/0000011", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": [ - { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - { - "@id": "https://orcid.org/0000-0001-5886-7860" - } - ], - "http://purl.org/dc/elements/1.1/description": { - "@value": "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." + "@id": "https://orcid.org/0000-0001-7961-6091", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Monique Zahn" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/sbo" - }, - { - "@id": "https://bioregistry.io/registry/emmo.cif" - }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "monique.zahn@sib.swiss" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/fao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the anatomy of fungi.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/fungal-anatomy-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fungal gross anatomy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/iso15926" + "@id": "https://www.obofoundry.org/ontology/fao" }, { - "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao" }, { - "@id": "https://bioregistry.io/registry/cao" + "@id": "https://registry.bio2kg.org/resource/fao" }, { - "@id": "https://bioregistry.io/registry/emmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/FAO" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "http://www.ontobee.org/ontology/FAO" }, { - "@id": "https://bioregistry.io/registry/dolce" + "@id": "https://bioportal.bioontology.org/ontologies/FAO" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://fairsharing.org/FAIRsharing.xs6t67" }, { - "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" - }, + "@id": "http://aber-owl.net/ontology/FAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/rex" + "@value": "microbiology" }, { - "@id": "https://bioregistry.io/registry/rxno" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/voc4cat" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/afo" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/cheminf" + "@value": "fungi" }, { - "@id": "https://bioregistry.io/registry/chmo" + "@value": "obo" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NDFI4Cat Collection" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/fungal-anatomy-ontology/" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6330-7526" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FAO_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fao" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RXNORM", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi", + "@id": "http://aber-owl.net/ontology/EO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/bgee.gene", + "@id": "http://aber-owl.net/ontology/ATO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT", + "@id": "http://www.ontobee.org/ontology/OMIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/ctd", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/ctd.gene" - }, - { - "@id": "https://bioregistry.io/registry/ctd.chemical" - }, - { - "@id": "https://bioregistry.io/registry/ctd.disease" - } - ] + "@id": "https://registry.identifiers.org/registry/civic.vid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } }, { - "@id": "http://www.ontobee.org/ontology/GNO", + "@id": "https://registry.bio2kg.org/resource/virmirdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov", + "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ttprgy", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/schem", + "@id": "https://www.uniprot.org/database/DB-0049", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/aao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Selventa legacy chemical namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Selventa Chemicals" + "@value": "Amphibian gross anatomy" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.mxx5rp" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AAO" + }, + { + "@id": "https://registry.bio2kg.org/resource/aao" + }, + { + "@id": "https://www.obofoundry.org/ontology/aao" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "bel" + "@value": "ontology" }, { - "@value": "chemistry" + "@value": "anatomy" }, { - "@value": "selventa" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt" + "@id": "http://github.com/seger/aao" }, - "https://bioregistry.io/schema/#0000005": "A0001", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/schem/$1", - "https://bioregistry.io/schema/#0000008": "^A\\d{4}$", + "https://bioregistry.io/schema/#0000005": "0000138", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1810-9886" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AAO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "aao" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biomodels.teddy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ydpm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/SO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/void", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vocabulary of Interlinked Datasets" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biocontext/void" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://vocab.deri.ie/void" + }, + "https://bioregistry.io/schema/#0000005": "feature", + "https://bioregistry.io/schema/#0000006": "http://rdfs.org/ns/void#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/schem/", + "https://bioregistry.io/schema/#0000024": "http://rdfs.org/ns/void#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/schem/A0001" + "@id": "http://rdfs.org/ns/void#feature" }, "https://bioregistry.io/schema/#0000029": { - "@value": "schem" + "@value": "void" } }, { - "@id": "https://bioregistry.io/registry/probonto", + "@id": "https://bioregistry.io/registry/cabri", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.", + "http://purl.org/dc/terms/description": "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/probonto/ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Probability Distribution Ontology" + "@value": "Common Access to Biological Resources and Information Project" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/probonto" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto" + "@id": "http://edamontology.org/data_2380" }, { - "@id": "https://fairsharing.org/FAIRsharing.8zqzm9" + "@id": "https://registry.identifiers.org/registry/cabri" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto" + "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qx2rvz" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "statistics" + "@value": "molecular microbiology" }, { - "@value": "computational biology" + "@value": "medical microbiology" }, { - "@value": "ontology" + "@value": "virology" }, { - "@value": "systems biology" + "@value": "applied microbiology" }, { - "@value": "mathematics" + "@value": "molecular biology" + }, + { + "@value": "microbiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://probonto.org" - }, - "https://bioregistry.io/schema/#0000005": "c0000005", - "https://bioregistry.io/schema/#0000006": "http://www.probonto.org/ontology#PROB_$1", - "https://bioregistry.io/schema/#0000008": "^(c|k)\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/probonto.ttl" + "@id": "http://www.cabri.org/" }, + "https://bioregistry.io/schema/#0000005": "dsmz_mutz-id:ACC 291", + "https://bioregistry.io/schema/#0000006": "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]", + "https://bioregistry.io/schema/#0000008": "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4614-562X" - }, - "https://bioregistry.io/schema/#0000024": "http://www.probonto.org/ontology#PROB_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.probonto.org/ontology#PROB_c0000005" + "@id": "https://orcid.org/0000-0003-4694-3883" }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cabri:", "https://bioregistry.io/schema/#0000029": { - "@value": "probonto" + "@value": "cabri" } }, { - "@id": "http://www.ontobee.org/ontology/CARO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.uniprot.org/database/DB-0160", + "@id": "http://edamontology.org/data_2664", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/unipathway.compound", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.", + "@id": "https://registry.bio2kg.org/resource/trnadbce", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniPathway Compound" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound" - }, - { - "@id": "https://registry.identifiers.org/registry/unipathway.compound" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway" - }, - "https://bioregistry.io/schema/#0000005": "UPC04349", - "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1", - "https://bioregistry.io/schema/#0000008": "^UPC\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=UPC04349" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "unipathway.compound" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.re3data.org/repository/r3d100010562", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO", + "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.s3r6sk", + "@id": "https://registry.identifiers.org/registry/sitex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MAMO", + "@id": "https://registry.bio2kg.org/resource/mgi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal", + "@id": "http://aber-owl.net/ontology/WBLS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/fairsharing.user", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A user of FAIRsharing", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "http://aber-owl.net/ontology/OGMS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://orcid.org/0000-0002-1216-2969", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anne Morgat" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "anne.morgat@sib.swiss" }, { - "@id": "https://bioregistry.io/registry/fairsharing" + "@value": "Anne.Morgat@sib.swiss" } - ], + ] + }, + { + "@id": "https://bioregistry.io/registry/wwf.ecoregion", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIRsharing User" + "@value": "World Wildlife Fund Ecoregion" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P1294" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fairsharing.org" + "@id": "https://www.worldwildlife.org/biomes" }, - "https://bioregistry.io/schema/#0000005": "5112", - "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/users/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "AT1402", + "https://bioregistry.io/schema/#0000006": "https://www.worldwildlife.org/ecoregions/$1", + "https://bioregistry.io/schema/#0000008": "^AT\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/users/", + "https://bioregistry.io/schema/#0000023": { + "@value": "WWF" + }, + "https://bioregistry.io/schema/#0000024": "https://www.worldwildlife.org/ecoregions/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://fairsharing.org/users/5112" + "@id": "https://www.worldwildlife.org/ecoregions/AT1402" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fairsharing.user" + "@value": "wwf.ecoregion" } }, { - "@id": "https://bioregistry.io/registry/vandf", + "@id": "https://bioregistry.io/registry/dron", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. ", + "http://purl.org/dc/terms/description": "We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ufbmi/dron" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Veterans Administration National Drug File" + "@value": "The Drug Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.xn3pb3" + "@id": "http://aber-owl.net/ontology/DRON" }, { - "@id": "http://aber-owl.net/ontology/VANDF" + "@id": "https://bioportal.bioontology.org/ontologies/DRON" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229" + "@id": "https://www.obofoundry.org/ontology/dron" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VANDF" + "@id": "https://fairsharing.org/FAIRsharing.w5ntfd" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF" + "@id": "http://www.ontobee.org/ontology/DRON" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DRON" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "obo" }, { - "@value": "pharmacology" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF" + "@id": "https://github.com/ufbmi/dron" + }, + "https://bioregistry.io/schema/#0000005": "00023232", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DRON_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/dron.owl" }, - "https://bioregistry.io/schema/#0000005": "4019477", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/VANDF/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N90f381989f4d4da096cf6f63e3027e66" + "@id": "https://orcid.org/0000-0002-9881-1017" }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/VANDF/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DRON_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/VANDF/4019477" + "@id": "http://purl.obolibrary.org/obo/DRON_00023232" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vandf" - } - }, - { - "@id": "_:N90f381989f4d4da096cf6f63e3027e66", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael Lincoln" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "michael.lincoln@med.va.gov" + "@value": "dron" } }, { - "@id": "https://bioregistry.io/registry/galen", + "@id": "https://bioregistry.io/registry/pso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic.", + "http://purl.org/dc/terms/description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Planteome/plant-stress-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GALEN" + "@value": "Plant Stress Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/GALEN" + "@id": "http://aber-owl.net/ontology/PSO" }, { - "@id": "http://aber-owl.net/ontology/GALEN" + "@id": "https://bioportal.bioontology.org/ontologies/PSO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso" + }, + { + "@id": "https://www.obofoundry.org/ontology/pso" + }, + { + "@id": "http://www.ontobee.org/ontology/PSO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dyj433" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + }, + { + "@value": "occupational medicine" + }, + { + "@value": "medical informatics" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.opengalen.org" + "@id": "https://github.com/Planteome/plant-stress-ontology" }, - "https://bioregistry.io/schema/#0000005": "MagnitudeValueType", - "https://bioregistry.io/schema/#0000006": "http://www.co-ode.org/ontologies/galen#$1", + "https://bioregistry.io/schema/#0000005": "0000013", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/GALEN/1/galen.owl" + "@id": "http://purl.obolibrary.org/obo/pso.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/ro" }, - "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N0832d90b503b48f08260e88fa8495d79" + "@id": "https://orcid.org/0000-0002-6379-8932" }, - "https://bioregistry.io/schema/#0000024": "http://www.co-ode.org/ontologies/galen#", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PSO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.co-ode.org/ontologies/galen#MagnitudeValueType" + "@id": "http://purl.obolibrary.org/obo/PSO_0000013" }, "https://bioregistry.io/schema/#0000029": { - "@value": "galen" - } - }, - { - "@id": "_:N0832d90b503b48f08260e88fa8495d79", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Julian Seidenberg" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "j@deltaflow.com" + "@value": "pso" } }, { - "@id": "https://bioregistry.io/registry/cell_model_passport", + "@id": "https://bioregistry.io/registry/ncro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/description": "An ontology for non-coding RNA, both of biological origin, and engineered.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sanger Cell Model Passports" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OmniSearch/ncro" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Non-Coding RNA Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.vppyga" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NCRO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro" + }, + { + "@id": "http://www.ontobee.org/ontology/NCRO" + }, + { + "@id": "http://aber-owl.net/ontology/NCRO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO" + }, + { + "@id": "https://www.obofoundry.org/ontology/ncro" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "genomics" + }, + { + "@value": "obo" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cellmodelpassports.sanger.ac.uk/" + "@id": "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology" + }, + "https://bioregistry.io/schema/#0000005": "0002927", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ncro.owl" }, - "https://bioregistry.io/schema/#0000005": "SIDM01262", - "https://bioregistry.io/schema/#0000006": "https://cellmodelpassports.sanger.ac.uk/passports/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cellmodelpassports.sanger.ac.uk/passports/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2408-2883" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCRO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cellmodelpassports.sanger.ac.uk/passports/SIDM01262" + "@id": "http://purl.obolibrary.org/obo/NCRO_0002927" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cell_model_passport" + "@value": "ncro" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn", + "@id": "https://registry.identifiers.org/registry/cath.superfamily", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/ADCAD", + "@id": "http://www.wikidata.org/entity/P232", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bpxgb6", + "@id": "https://www.obofoundry.org/ontology/hp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/aaindex", + "@id": "https://bioregistry.io/registry/ukprn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier of an entry from the AAindex database.", + "http://purl.org/dc/terms/description": "identifier for an educational organization issued by the UK Register of Learning Providers", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AAindex" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/aaindex" - }, - { - "@id": "http://edamontology.org/data_1128" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" + "@value": "UK Provider Reference Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P4971" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.ad.jp/aaindex/" + "@id": "https://www.ukrlp.co.uk" }, - "https://bioregistry.io/schema/#0000005": "BUNA790102", - "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1", + "https://bioregistry.io/schema/#0000005": "10007835", + "https://bioregistry.io/schema/#0000006": "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000023": { + "@value": "ukprns" }, - "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?aaindex:", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ukprn:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.genome.jp/dbget-bin/www_bget?aaindex:BUNA790102" + "@id": "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=10007835&pv_status=VERIFIED&pv_vis_code=L" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aaindex" + "@value": "ukprn" } }, { - "@id": "https://www.uniprot.org/database/DB-0184", + "@id": "https://bioregistry.io/registry/mir", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Identifiers.org Registry" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/mir" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIR" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://registry.identifiers.org/registry" + }, + "https://bioregistry.io/schema/#0000005": "00100037", + "https://bioregistry.io/schema/#0000006": "https://registry.identifiers.org/registry?query=MIR:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://registry.identifiers.org/registry?query=MIR:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://registry.identifiers.org/registry?query=MIR:00100037" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mir" } }, { - "@id": "https://registry.identifiers.org/registry/transyt", + "@id": "https://registry.identifiers.org/registry/ror", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/clo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.nbe4fq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bartoc.org/en/node/445", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://orcid.org/0000-0003-4221-7956", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael Witt" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mwitt@purdue.edu" } }, { - "@id": "https://www.obofoundry.org/ontology/nmr", + "@id": "https://registry.identifiers.org/registry/kegg.drug", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2ffmsb", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000022", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The main contact person for a registry" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000002" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has responsible" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000020" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd", + "@id": "https://registry.identifiers.org/registry/orphanet", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/mgi", + "@id": "https://registry.identifiers.org/registry/envipath", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/gxa.expt", + "@id": "https://registry.identifiers.org/registry/giardiadb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/gpmdb", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb", + "@id": "http://www.ontobee.org/ontology/NCRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/ddanat", + "@id": "https://bioregistry.io/registry/ado", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum.", + "http://purl.org/dc/terms/description": "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/dictyBase/migration-data" + "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dictyostelium discoideum anatomy" + "@value": "Alzheimer's Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT" - }, - { - "@id": "http://aber-owl.net/ontology/DDANAT" - }, - { - "@id": "https://www.obofoundry.org/ontology/ddanat" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z656ab" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado" }, { - "@id": "http://www.ontobee.org/ontology/DDANAT" + "@id": "http://www.ontobee.org/ontology/ADO" }, { - "@id": "https://registry.bio2kg.org/resource/ddanat" + "@id": "https://www.obofoundry.org/ontology/ado" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DDANAT" + "@id": "https://fairsharing.org/FAIRsharing.ckd4rf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat" + "@id": "https://bioportal.bioontology.org/ontologies/ADO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT" + "@id": "http://aber-owl.net/ontology/ADO" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, { "@value": "obo" }, { - "@value": "ontology" - }, - { - "@value": "slime-mould" + "@value": "health science" }, { - "@value": "anatomy" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dictybase.org/" + "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO" }, - "https://bioregistry.io/schema/#0000005": "0000006", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DDANAT_$1", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ADO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ddanat.owl" + "@id": "http://purl.obolibrary.org/obo/ado.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/bfo" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4532-2703" + "@id": "https://orcid.org/0000-0001-9896-3531" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DDANAT_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ADO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DDANAT_0000006" + "@id": "http://purl.obolibrary.org/obo/ADO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ddanat" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ado" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mgxgza", + "@id": "https://fairsharing.org/FAIRsharing.aq280w", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc", + "@id": "https://bioregistry.io/metaregistry/biocontext/SAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx", + "@id": "https://registry.identifiers.org/registry/cdd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/bcrc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "@id": "http://www.ontobee.org/ontology/MF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BCRC Strain Collection Catalog" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "cell lines" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://catalog.bcrc.firdi.org.tw" - }, - "https://bioregistry.io/schema/#0000005": "60316", - "https://bioregistry.io/schema/#0000006": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=60316" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bcrc" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.re3data.org/repository/r3d100011242", + "@id": "https://fairsharing.org/FAIRsharing.96f3gm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/go.resource", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database-specific registry supporting curation in the Gene Ontology", + "@id": "https://registry.identifiers.org/registry/glycopost", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://geneontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "CHEBI", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/go/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/go/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/go/CHEBI" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "go.resource" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/HP", + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_2632", + "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://orcid.org/0000-0003-0719-3485", + "@id": "https://orcid.org/0000-0002-7613-4123", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Elvira Mitraka" + "@value": "Jakob Voß" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "elvira@imbb.forth.gr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/rrid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/dinto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0205", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@value": "voss@gbv.de" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/ppo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.edxb58", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.brhpb0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/doqcs.model", + "@id": "https://bioregistry.io/registry/narcis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/doqcs" - } - ], + "http://purl.org/dc/terms/description": "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Quantitative Cellular Signaling: Model" + "@value": "National Academic Research and Collaborations Information System" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/doqcs.model" + "@id": "https://fairsharing.org/FAIRsharing.f63h4k" }, { - "@id": "https://registry.identifiers.org/registry/doqcs.model" + "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model" + "@id": "https://registry.identifiers.org/registry/narcis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "model" + "@value": "subject agnostic" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://doqcs.ncbs.res.in/" + "@id": "http://www.narcis.nl" }, - "https://bioregistry.io/schema/#0000005": "57", - "https://bioregistry.io/schema/#0000006": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "oai:cwi.nl:4725", + "https://bioregistry.io/schema/#0000006": "http://www.narcis.nl/publication/RecordID/$1", + "https://bioregistry.io/schema/#0000008": "^oai\\:cwi\\.nl\\:\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=", + "https://bioregistry.io/schema/#0000024": "http://www.narcis.nl/publication/RecordID/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=57" + "@id": "http://www.narcis.nl/publication/RecordID/oai:cwi.nl:4725" }, "https://bioregistry.io/schema/#0000029": { - "@value": "doqcs.model" + "@value": "narcis" } }, { - "@id": "https://registry.identifiers.org/registry/exac.gene", + "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/sgn", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/NIFSTD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/pmc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant.", + "http://purl.org/dc/terms/description": "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sol Genomics Network" + "@value": "PubMed Central" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGN" + "@id": "https://registry.identifiers.org/registry/pmc" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn" + "@id": "https://registry.bio2kg.org/resource/pmc" }, { - "@id": "https://fairsharing.org/FAIRsharing.3zqvaf" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID" }, { - "@id": "https://registry.bio2kg.org/resource/sgn" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN" + "@id": "https://fairsharing.org/FAIRsharing.wpt5mp" }, { - "@id": "https://registry.identifiers.org/registry/sgn" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID" }, { - "@id": "https://www.re3data.org/repository/r3d100012078" + "@id": "http://www.wikidata.org/entity/P932" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "pathway" - }, - { - "@value": "small molecule" + "@value": "environmental science" }, { - "@value": "comparative genomics" + "@value": "biomedical science" }, { - "@value": "plant" + "@value": "life science" }, { - "@value": "agriculture" + "@value": "bibliography" }, { - "@value": "genome" + "@value": "epidemiology" }, { - "@value": "botany" + "@value": "earth science" }, { - "@value": "genomics" + "@value": "virology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://solgenomics.net/" + "@id": "http://europepmc.org/" }, - "https://bioregistry.io/schema/#0000005": "0001", - "https://bioregistry.io/schema/#0000006": "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "PMC3084216", + "https://bioregistry.io/schema/#0000006": "http://europepmc.org/articles/$1", + "https://bioregistry.io/schema/#0000008": "^PMC\\d+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://solgenomics.net/phenome/locus_display.pl?locus_id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1798-9797" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "PMCID" + }, + { + "@value": "PMC" + } + ], + "https://bioregistry.io/schema/#0000024": "http://europepmc.org/articles/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://solgenomics.net/phenome/locus_display.pl?locus_id=0001" + "@id": "http://europepmc.org/articles/PMC3084216" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sgn" + "@value": "pmc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola", + "@id": "https://registry.identifiers.org/registry/dictybase.est", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/OHMI", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/abm", + "@id": "https://bioregistry.io/registry/kupo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Applied Biological Materials cell line products" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM" + "@value": "Kidney and Urinary Pathway Ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.abmgood.com/Cell-Biology.html" + "@id": "http://www.kupkb.org/" }, - "https://bioregistry.io/schema/#0000005": "T0599", - "https://bioregistry.io/schema/#0000006": "https://www.abmgood.com/search?query=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.abmgood.com/search?query=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.abmgood.com/search?query=T0599" + "https://bioregistry.io/schema/#0000005": "0001009", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/cl" }, "https://bioregistry.io/schema/#0000029": { - "@value": "abm" + "@value": "kupo" } }, { - "@id": "https://registry.identifiers.org/registry/biocatalogue.service", + "@id": "http://www.ontobee.org/ontology/IDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/echinobase", + "@id": "https://fairsharing.org/FAIRsharing.vgw1m6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/PSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ricecyc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species.", + "http://purl.org/dc/terms/description": "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Echinobase" + "@value": "Rice Metabolic Pathways" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/ricecyc" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" + }, + { + "@value": "gene" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.echinobase.org" + "@id": "http://www.gramene.org/pathway/ricecyc.html" }, - "https://bioregistry.io/schema/#0000005": "23159291", - "https://bioregistry.io/schema/#0000006": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "PWY-1042", + "https://bioregistry.io/schema/#0000006": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=23159291" + "@id": "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=PWY-1042" }, "https://bioregistry.io/schema/#0000029": { - "@value": "echinobase" + "@value": "ricecyc" } }, { - "@id": "https://registry.identifiers.org/registry/cgd", + "@id": "http://aber-owl.net/ontology/HOM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd", + "@id": "https://bioportal.bioontology.org/ontologies/SWO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor", + "@id": "http://www.wikidata.org/entity/P594", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/doid", + "@id": "https://registry.identifiers.org/registry/paxdb.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/cst", + "@id": "https://bioregistry.io/registry/cstr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources. ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Common Science and Technology Resources" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/cstr" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.cstr.cn/en/" + }, + "https://bioregistry.io/schema/#0000005": "31253.11.sciencedb.j00001.00123", + "https://bioregistry.io/schema/#0000006": "https://cstr.cn/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{5}\\.\\d{2}\\..*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cstr.cn/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cstr.cn/31253.11.sciencedb.j00001.00123" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cstr" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p06nme", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-3336-2476", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/hoso" - }, - { - "@id": "https://bioregistry.io/registry/hepro" - } - ], + "@id": "https://orcid.org/0000-0002-6242-2167", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Paul Fabry" + "@value": "Nikolaos Moustakas" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "paul.fabry@usherbrooke.ca" + "@value": "nikolaos.moustakas@catalysis.de" } }, { - "@id": "http://www.ontobee.org/ontology/PW", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-6062-7492", + "@id": "https://orcid.org/0000-0002-9473-283X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Support Email" + "@value": "Carlos Oscar S. Sorzano" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "support@ccdc.cam.ac.uk" + "@value": "isanchez@cnb.csic.es" } }, { - "@id": "https://fairsharing.org/FAIRsharing.fx0mw7", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4e3qh9", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/ogms", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/pubchem.bioassay", + "@id": "https://www.uniprot.org/database/DB-0144", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/lincs.data", + "@id": "https://bioregistry.io/registry/co_367", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).", + "http://purl.org/dc/terms/description": "Curator name: Clara S. Stanschewski; Curator Affiliation: King Abdullah University of Science and Technology; Contributing Scientists or Crop expert group: The Salt Lab and the Quinoa Phenotyping Consortium Creation Date: 23.05.2021", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LINCS Data" + "@value": "Quinoa Ontology ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://cropontology.org/ontology/CO_367" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://cropontology.org/term/CO_367:ROOT" + }, + "https://bioregistry.io/schema/#0000005": "0000004", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_367:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_367:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_367:0000004" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_367" + } + }, + { + "@id": "https://bioregistry.io/registry/doqcs.pathway", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/doqcs" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Quantitative Cellular Signaling: Pathway" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA" + "@id": "https://registry.bio2kg.org/resource/doqcs.pathway" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY" }, { - "@id": "https://registry.identifiers.org/registry/lincs.data" + "@id": "https://registry.identifiers.org/registry/doqcs.pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pathway" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lincsportal.ccs.miami.edu/datasets/" + "@id": "http://doqcs.ncbs.res.in/" }, - "https://bioregistry.io/schema/#0000005": "LDS-1110", - "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/datasets/#/view/$1", - "https://bioregistry.io/schema/#0000008": "^[EL]D[SG]-\\d+$", + "https://bioregistry.io/schema/#0000005": "131", + "https://bioregistry.io/schema/#0000006": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/datasets/#/view/", + "https://bioregistry.io/schema/#0000024": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1110" + "@id": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=131" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lincs.data" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/bind", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f73xhd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.module", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DCAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "doqcs.pathway" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB", + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/PPO", + "@id": "http://edamontology.org/data_2650", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/sitex", + "@id": "https://registry.bio2kg.org/resource/pandit", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/cath.superfamily", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBIB", + "@id": "https://bioregistry.io/registry/wikipedia.en", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wikipedia" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en" + }, + { + "@id": "https://registry.identifiers.org/registry/wikipedia.en" + }, + { + "@id": "https://registry.bio2kg.org/resource/wikipedia" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://en.wikipedia.org/wiki/Main_Page" + }, + "https://bioregistry.io/schema/#0000005": "SM_UB-81", + "https://bioregistry.io/schema/#0000006": "http://en.wikipedia.org/wiki/$1", + "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "wikipedia" + }, + "https://bioregistry.io/schema/#0000024": "http://en.wikipedia.org/wiki/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://en.wikipedia.org/wiki/SM_UB-81" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wikipedia.en" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CL", + "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/MMO", + "@id": "https://www.re3data.org/repository/r3d100011527", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT", + "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase", + "@id": "https://registry.bio2kg.org/resource/pubchem.substance", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN", + "@id": "http://aber-owl.net/ontology/MOP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase", + "@id": "https://www.obofoundry.org/ontology/mp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/chickenqtldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO", + "@id": "https://bioregistry.io/metaregistry/biocontext/FMA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/genefarm", + "@id": "https://bioregistry.io/registry/mmrrc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.", + "http://purl.org/dc/terms/description": "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeneFarm" + "@value": "Mutant Mouse Resource and Research Centers" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/genefarm" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC" }, { - "@id": "https://fairsharing.org/FAIRsharing.2mayq0" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm" + "@id": "https://fairsharing.org/FAIRsharing.9dpd18" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM" + "@id": "https://www.re3data.org/repository/r3d100013715" }, { - "@id": "https://registry.bio2kg.org/resource/genefarm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC" + }, + { + "@id": "https://registry.identifiers.org/registry/mmrrc" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "embryonic stem cell line" }, { - "@value": "sequence" + "@value": "mutant mouse strain" }, { - "@value": "expression" + "@value": "embryonic stem cell" }, { - "@value": "life science" + "@value": "database" }, { - "@value": "nucleotide" + "@value": "transgenic" + }, + { + "@value": "cryopreserved" + }, + { + "@value": "mouse strain" + }, + { + "@value": "biology" + }, + { + "@value": "mutant" + }, + { + "@value": "faseb list" + }, + { + "@value": "stem cell" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://urgi.versailles.inra.fr/Genefarm/" + "@id": "https://www.mmrrc.org" }, - "https://bioregistry.io/schema/#0000005": "4892", - "https://bioregistry.io/schema/#0000006": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1", + "https://bioregistry.io/schema/#0000005": "70", + "https://bioregistry.io/schema/#0000006": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=", + "https://bioregistry.io/schema/#0000024": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=4892" + "@id": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=70" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genefarm" + "@value": "mmrrc" } }, { - "@id": "https://bioregistry.io/registry/merops.clan", + "@id": "https://bioregistry.io/registry/oa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Web Annotation Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/merops" + "@id": "https://bioportal.bioontology.org/ontologies/OA" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/oa" + }, + { + "@id": "http://aber-owl.net/ontology/OA" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MEROPS Clan" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/merops" + "@id": "http://www.w3.org/ns/oa" + }, + "https://bioregistry.io/schema/#0000005": "sourceDateStart", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/oa#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/OA/4/oa.owl" }, - "https://bioregistry.io/schema/#0000005": "IA", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/oa#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=IA" + "@id": "http://www.w3.org/ns/oa#sourceDateStart" }, "https://bioregistry.io/schema/#0000029": { - "@value": "merops.clan" + "@value": "oa" } }, { - "@id": "https://fairsharing.org/FAIRsharing.67sssf", + "@id": "http://edamontology.org/data_2634", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction", + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/interpro", + "@id": "https://registry.identifiers.org/registry/slm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ddk9t9", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8d6247", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/allergome", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome", + "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.re3data.org/repository/r3d100012458", + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.669cnk", + "@id": "https://fairsharing.org/FAIRsharing.8337e2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cellimage", + "@id": "https://www.obofoundry.org/ontology/clyh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://edamontology.org/data_1106", + "@id": "https://www.re3data.org/repository/r3d100010652", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/cco", + "@id": "https://registry.identifiers.org/registry/oryzabase.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/ohd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://orcid.org/0000-0001-9125-4337", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Francesco Vitali" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "francesco.vitali@ibba.cnr.it" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/bko", + "@id": "https://bioregistry.io/registry/cdpd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way.", + "http://purl.org/dc/terms/description": "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SBGN Bricks data and ontology" + "@value": "Canadian Drug Product Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/BKO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd" }, { - "@id": "http://aber-owl.net/ontology/BKO" + "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD" + }, + { + "@id": "https://registry.identifiers.org/registry/cdpd" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sbgnbricks.org/" + "@id": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp" }, - "https://bioregistry.io/schema/#0000005": "0000204", - "https://bioregistry.io/schema/#0000006": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1", + "https://bioregistry.io/schema/#0000005": "63250", + "https://bioregistry.io/schema/#0000006": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/BKO/1/bko.owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2118-035X" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:", + "https://bioregistry.io/schema/#0000024": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:0000204" + "@id": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=63250" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bko" + "@value": "cdpd" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ABS", + "@id": "https://fairsharing.org/FAIRsharing.vs7865", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ontoneo", + "@id": "https://bioregistry.io/registry/compulyeast", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.", + "http://purl.org/dc/terms/description": "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ontoneo-project/Ontoneo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Obstetric and Neonatal Ontology" + "@value": "Compluyeast-2D-DB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO" - }, - { - "@id": "http://www.ontobee.org/ontology/ONTONEO" - }, - { - "@id": "https://www.obofoundry.org/ontology/ontoneo" - }, - { - "@id": "http://aber-owl.net/ontology/ONTONEO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5a4y1y" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO" + "@id": "https://fairsharing.org/FAIRsharing.rbjs3e" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obstetrics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast" }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/compulyeast" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ontoneo.com" + "@id": "http://compluyeast2dpage.dacya.ucm.es/" }, - "https://bioregistry.io/schema/#0000005": "00000098", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONTONEO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ontoneo.owl" + "https://bioregistry.io/schema/#0000005": "O08709", + "https://bioregistry.io/schema/#0000006": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2338-8872" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONTONEO_", + "https://bioregistry.io/schema/#0000024": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ONTONEO_00000098" + "@id": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=O08709" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ontoneo" + "@value": "compulyeast" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp", + "@id": "https://bioregistry.io/metaregistry/biocontext/CPC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/iedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P696", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11956", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.ontobee.org/ontology/VariO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0003-3781-6962", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Meng LIU" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "liumeng94@sjtu.edu.cn" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://fairsharing.org/FAIRsharing.agvc7y", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE", + "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/edam", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use." + "@id": "https://fairsharing.org/FAIRsharing.d5ff6e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000141", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "https://bioregistry.io/registry/oma.grp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "http://edamontology.org/data_1173" - }, - { - "@id": "http://edamontology.org/data_2326" - }, - { - "@id": "http://edamontology.org/data_1146" - }, - { - "@id": "http://edamontology.org/data_1147" - }, - { - "@id": "http://edamontology.org/data_2632" - }, - { - "@id": "http://edamontology.org/data_1180" - }, - { - "@id": "http://edamontology.org/data_2302" - }, - { - "@id": "http://edamontology.org/data_1129" - }, - { - "@id": "http://edamontology.org/data_1153" - }, - { - "@id": "http://edamontology.org/data_2620" - }, - { - "@id": "http://edamontology.org/data_2773" - }, - { - "@id": "http://edamontology.org/data_2642" - }, - { - "@id": "http://edamontology.org/data_2611" - }, - { - "@id": "http://edamontology.org/data_1098" - }, - { - "@id": "http://edamontology.org/data_2660" - }, - { - "@id": "http://edamontology.org/data_1105" - }, - { - "@id": "http://edamontology.org/data_1161" - }, - { - "@id": "http://edamontology.org/data_3952" - }, - { - "@id": "http://edamontology.org/data_2667" - }, - { - "@id": "http://edamontology.org/data_1136" - }, - { - "@id": "http://edamontology.org/data_1177" - }, - { - "@id": "http://edamontology.org/data_1039" - }, - { - "@id": "http://edamontology.org/data_2656" - }, - { - "@id": "http://edamontology.org/data_1182" - }, - { - "@id": "http://edamontology.org/data_2651" - }, - { - "@id": "http://edamontology.org/data_2644" - }, - { - "@id": "http://edamontology.org/data_2309" - }, - { - "@id": "http://edamontology.org/data_2641" - }, - { - "@id": "http://edamontology.org/data_1127" - }, - { - "@id": "http://edamontology.org/data_2719" - }, - { - "@id": "http://edamontology.org/data_2662" - }, - { - "@id": "http://edamontology.org/data_2314" - }, - { - "@id": "http://edamontology.org/data_2646" - }, - { - "@id": "http://edamontology.org/data_1141" - }, - { - "@id": "http://edamontology.org/data_2628" - }, - { - "@id": "http://edamontology.org/data_2356" - }, - { - "@id": "http://edamontology.org/data_1040" - }, - { - "@id": "http://edamontology.org/data_2578" - }, - { - "@id": "http://edamontology.org/data_2380" - }, - { - "@id": "http://edamontology.org/data_2390" - }, - { - "@id": "http://edamontology.org/data_2700" - }, - { - "@id": "http://edamontology.org/data_2104" - }, - { - "@id": "http://edamontology.org/data_2738" - }, - { - "@id": "http://edamontology.org/data_2613" - }, - { - "@id": "http://edamontology.org/data_3856" - }, - { - "@id": "http://edamontology.org/data_3264" - }, - { - "@id": "http://edamontology.org/data_2626" - }, - { - "@id": "http://edamontology.org/data_2723" - }, - { - "@id": "http://edamontology.org/data_2619" - }, - { - "@id": "http://edamontology.org/data_2344" - }, - { - "@id": "http://edamontology.org/data_2631" - }, - { - "@id": "http://edamontology.org/data_1133" - }, - { - "@id": "http://edamontology.org/data_2325" - }, - { - "@id": "http://edamontology.org/data_2346" - }, - { - "@id": "http://edamontology.org/data_2659" - }, - { - "@id": "http://edamontology.org/data_2605" - }, - { - "@id": "http://edamontology.org/data_2638" - }, - { - "@id": "http://edamontology.org/data_1188" - }, - { - "@id": "http://edamontology.org/data_2669" - }, - { - "@id": "http://edamontology.org/data_2343" - }, - { - "@id": "http://edamontology.org/data_2758" - }, - { - "@id": "http://edamontology.org/data_3021" - }, - { - "@id": "http://edamontology.org/data_1042" - }, - { - "@id": "http://edamontology.org/data_1002" - }, - { - "@id": "http://edamontology.org/data_2292" - }, - { - "@id": "http://edamontology.org/data_2625" - }, - { - "@id": "http://edamontology.org/data_3265" - }, - { - "@id": "http://edamontology.org/data_2610" - }, - { - "@id": "http://edamontology.org/data_1187" - }, - { - "@id": "http://edamontology.org/data_2741" - }, - { - "@id": "http://edamontology.org/data_2664" - }, - { - "@id": "http://edamontology.org/data_1179" - }, - { - "@id": "http://edamontology.org/data_1035" - }, - { - "@id": "http://edamontology.org/data_2367" - }, - { - "@id": "http://edamontology.org/data_2608" - }, - { - "@id": "http://edamontology.org/data_1181" - }, - { - "@id": "http://edamontology.org/data_1106" - }, - { - "@id": "http://edamontology.org/data_1004" - }, - { - "@id": "http://edamontology.org/data_2645" - }, - { - "@id": "http://edamontology.org/data_1162" - }, - { - "@id": "http://edamontology.org/data_2650" - }, - { - "@id": "http://edamontology.org/data_2622" - }, - { - "@id": "http://edamontology.org/data_2639" - }, - { - "@id": "http://edamontology.org/data_2392" - }, - { - "@id": "http://edamontology.org/data_1089" - }, - { - "@id": "http://edamontology.org/data_1041" - }, - { - "@id": "http://edamontology.org/data_1011" - }, - { - "@id": "http://edamontology.org/data_1027" - }, - { - "@id": "http://edamontology.org/data_2665" - }, - { - "@id": "http://edamontology.org/data_3103" - }, - { - "@id": "http://edamontology.org/data_2609" - }, - { - "@id": "http://edamontology.org/data_2766" - }, - { - "@id": "http://edamontology.org/data_2635" - }, - { - "@id": "http://edamontology.org/data_2787" - }, - { - "@id": "http://edamontology.org/data_2389" - }, - { - "@id": "http://edamontology.org/data_1805" - }, - { - "@id": "http://edamontology.org/data_1174" - }, - { - "@id": "http://edamontology.org/data_2654" - }, - { - "@id": "http://edamontology.org/data_2652" - }, - { - "@id": "http://edamontology.org/data_2657" - }, - { - "@id": "http://edamontology.org/data_2756" - }, - { - "@id": "http://edamontology.org/data_2386" - }, - { - "@id": "http://edamontology.org/data_3757" - }, - { - "@id": "http://edamontology.org/data_2666" - }, - { - "@id": "http://edamontology.org/data_1176" - }, - { - "@id": "http://edamontology.org/data_2789" - }, - { - "@id": "http://edamontology.org/data_2653" - }, - { - "@id": "http://edamontology.org/data_2616" - }, - { - "@id": "http://edamontology.org/data_2298" - }, - { - "@id": "http://edamontology.org/data_1003" - }, - { - "@id": "http://edamontology.org/data_1138" - }, - { - "@id": "http://edamontology.org/data_1128" - }, - { - "@id": "http://edamontology.org/data_2629" - }, - { - "@id": "http://edamontology.org/data_2634" - }, - { - "@id": "http://edamontology.org/data_2716" - }, - { - "@id": "http://edamontology.org/data_1155" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OMA Group" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_3274" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp" }, { - "@id": "http://edamontology.org/data_2658" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP" }, { - "@id": "http://edamontology.org/data_2615" + "@id": "https://registry.identifiers.org/registry/oma.grp" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": " http://edamontology.org" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "1004" + "@id": "https://omabrowser.org/cgi-bin/gateway.pl" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://edamontology.org/data_$1" + "https://bioregistry.io/schema/#0000005": "LCSCCPN", + "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=LCSCCPN" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" + "https://bioregistry.io/schema/#0000029": { + "@value": "oma.grp" } }, { - "@id": "https://bioregistry.io/registry/graingenes.reference", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database for Triticeae and Avena references.", + "@id": "https://www.obofoundry.org/ontology/vt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0003-0530-4305", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GrainGenes" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://wheat.pw.usda.gov" - }, - "https://bioregistry.io/schema/#0000005": "WGS-95-1333", - "https://bioregistry.io/schema/#0000006": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=WGS-95-1333" + "@value": "Silvio Peroni" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "graingenes.reference" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "silvio.peroni@unibo.it" } }, { - "@id": "https://bioregistry.io/registry/loinc", + "@id": "https://registry.identifiers.org/registry/planttfdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/apd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P846", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rfLD2u", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gmd.ref", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/vsao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/mirnest", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The international standard for identifying health measurements, observations, and documents.", + "http://purl.org/dc/terms/description": "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Logical Observation Identifiers Names and Codes" + "@value": "miRNEST" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.2mk2zb" - }, - { - "@id": "https://bartoc.org/en/node/1897" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1" + "@id": "https://fairsharing.org/FAIRsharing.5pfx4r" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC" + "@id": "https://registry.bio2kg.org/resource/mirnest" }, { - "@id": "http://aber-owl.net/ontology/LOINC" + "@id": "https://registry.identifiers.org/registry/mirnest" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LOINC" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest" }, { - "@id": "http://www.wikidata.org/entity/P4338" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "preclinical studies" + "@value": "genomics" }, { - "@value": "ontology" + "@value": "expression" }, { - "@value": "biomedical science" + "@value": "life science" }, { - "@value": "life science" + "@value": "prediction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://loinc.org/" + "@id": "http://rhesus.amu.edu.pl/mirnest/copy/" }, - "https://bioregistry.io/schema/#0000005": "LL379-9", - "https://bioregistry.io/schema/#0000006": "https://loinc.org/$1", - "https://bioregistry.io/schema/#0000008": "^(\\d|\\w)+-\\d$", + "https://bioregistry.io/schema/#0000005": "MNEST029358", + "https://bioregistry.io/schema/#0000006": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^MNEST\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nbb9e881fa6a1437d9071cb8f83b46898" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "LNC" - }, - "https://bioregistry.io/schema/#0000024": "https://loinc.org/", + "https://bioregistry.io/schema/#0000024": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://loinc.org/LL379-9" + "@id": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=MNEST029358" }, "https://bioregistry.io/schema/#0000029": { - "@value": "loinc" + "@value": "mirnest" } }, { - "@id": "_:Nbb9e881fa6a1437d9071cb8f83b46898", + "@id": "https://bioregistry.io/registry/cog.category", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Higher-level classifications of COG Pathways", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/cog" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LOINC Support" + "@value": "COG Categories" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "loinc@regenstrief.org" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pathways" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/" + }, + "https://bioregistry.io/schema/#0000005": "K", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2265-5572" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/K" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cog.category" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa", + "@id": "https://registry.bio2kg.org/resource/genenote", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER", + "@id": "https://bioportal.bioontology.org/ontologies/MFOEM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/rnao", + "@id": "https://bioregistry.io/registry/allergome", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.", + "http://purl.org/dc/terms/description": "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BGSU-RNA/rnao" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNA ontology" + "@value": "Allergome" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/RNAO" - }, - { - "@id": "https://registry.bio2kg.org/resource/rnao" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RNAO" + "@id": "https://www.uniprot.org/database/DB-0160" }, { - "@id": "https://fairsharing.org/FAIRsharing.kqt2h2" + "@id": "https://fairsharing.org/FAIRsharing.w6cxgb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO" + "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME" }, { - "@id": "http://aber-owl.net/ontology/RNAO" + "@id": "https://registry.bio2kg.org/resource/allergome" }, { - "@id": "https://www.obofoundry.org/ontology/rnao" + "@id": "https://registry.identifiers.org/registry/allergome" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biochemistry" + "@value": "medicine" }, { - "@value": "obo" + "@value": "biomedical science" }, { - "@value": "ontology" + "@value": "allergen" }, { "@value": "life science" + }, + { + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/bgsu-rna/rnao" - }, - "https://bioregistry.io/schema/#0000005": "0000128", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RNAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/rnao.owl" + "@id": "http://www.allergome.org/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5985-7429" + "https://bioregistry.io/schema/#0000005": "1948", + "https://bioregistry.io/schema/#0000006": "http://www.allergome.org/script/dettaglio.php?id_molecule=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.allergome.org/script/dettaglio.php?id_molecule=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.allergome.org/script/dettaglio.php?id_molecule=1948" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RNAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "rnao" + "@value": "allergome" } }, { - "@id": "https://www.re3data.org/repository/r3d100010808", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://aber-owl.net/ontology/HOIP", + "@id": "http://www.wikidata.org/entity/P10074", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.uniprot.org/database/DB-0049", + "@id": "http://aber-owl.net/ontology/TEDDY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0118", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://www.ontobee.org/ontology/NOMEN", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/pkdb", + "@id": "https://bioregistry.io/registry/dbprobe", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. ", + "http://purl.org/dc/terms/description": "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/matthiaskoenig/pkdb/issues" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PK-DB" + "@value": "NCBI Probe database Public registry of nucleic acid reagents" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.AYegqK" - }, - { - "@id": "https://registry.identifiers.org/registry/pkdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "clinical veterinary medicine" - }, - { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/dbprobe" }, { - "@value": "pharmacology" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe" }, { - "@value": "clinical studies" + "@id": "http://edamontology.org/data_2719" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe" }, { - "@value": "pharmacogenomics" + "@id": "https://registry.bio2kg.org/resource/dbprobe" }, { - "@value": "personalized medicine" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "nucleotide" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hu-berlin.de/?set_language=en&cl=en" + "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=probe" }, - "https://bioregistry.io/schema/#0000005": "PKDB00198", - "https://bioregistry.io/schema/#0000006": "https://pk-db.com/data/$1", - "https://bioregistry.io/schema/#0000008": "^PKDB[0-9]{5}$", + "https://bioregistry.io/schema/#0000005": "1000000", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/probe/?term=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1725-179X" - }, - "https://bioregistry.io/schema/#0000024": "https://pk-db.com/data/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/probe/?term=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pk-db.com/data/PKDB00198" + "@id": "https://www.ncbi.nlm.nih.gov/probe/?term=1000000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pkdb" + "@value": "dbprobe" } }, { - "@id": "https://bioregistry.io/registry/peff", + "@id": "https://registry.identifiers.org/registry/bdgp.insertion", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OBA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dt9z89", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-7140-9933", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Thomas Lütteke" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "thomas@luetteke-online.de" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/vsdb", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PSI Extended File Format" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "Veterinary Substances DataBase" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.psidev.info/peff" - }, - "https://bioregistry.io/schema/#0000005": "0001011", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/peff/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/HUPO-PSI/PEFF/raw/master/CV/psi-peff-OBSOLETE-DO_NOT_USE.obo" + "@id": "https://sitem.herts.ac.uk/aeru/vsdb" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/peff/", + "https://bioregistry.io/schema/#0000005": "1868", + "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vsdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/peff/0001011" + "@id": "https://sitem.herts.ac.uk/aeru/vsdb/Reports/1868.htm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "peff" + "@value": "vsdb" } }, { - "@id": "https://bioregistry.io/registry/flybase", + "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dj8nt8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/metacyc.compound", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FlyBase is the database of the Drosophila Genome Projects and of associated literature.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/fbbt" - }, - { - "@id": "https://bioregistry.io/registry/fbsp" - }, - { - "@id": "https://bioregistry.io/registry/fbtc" - }, - { - "@id": "https://bioregistry.io/registry/fbcv" - }, - { - "@id": "https://bioregistry.io/registry/fbrf" - } - ], + "http://purl.org/dc/terms/description": "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyBase Gene" + "@value": "Metabolic Encyclopedia of metabolic and other pathways" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/flybase" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase" - }, - { - "@id": "http://edamontology.org/data_1089" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010591" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase" - }, - { - "@id": "https://registry.identifiers.org/registry/fb" + "@id": "https://fairsharing.org/FAIRsharing.yytevr" }, { - "@id": "https://www.uniprot.org/database/DB-0026" + "@id": "https://registry.identifiers.org/registry/metacyc.compound" }, { - "@id": "https://fairsharing.org/FAIRsharing.wrvze3" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FB" + "@id": "https://www.re3data.org/repository/r3d100011294" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc" }, { - "@id": "http://www.wikidata.org/entity/P3852" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb" + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "faseb list" - }, - { - "@value": "stock" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "life-cycle" - }, - { - "@value": "genome" - }, - { - "@value": "drosophilidae" - }, - { - "@value": "dna" - }, - { - "@value": "mutant" - }, - { - "@value": "bio.tools" - }, - { - "@value": "gene" - }, - { - "@value": "molecular genetics" - }, - { - "@value": "sequence" - }, - { - "@value": "controlled term" - }, - { - "@value": "allele" - }, - { - "@value": "genotype" - }, - { - "@value": "rna-seq" - }, - { - "@value": "anatomy" - }, - { - "@value": "interaction" - }, - { - "@value": "molecular biology" - }, - { - "@value": "genomics" + "@value": "metabolomics" }, { - "@value": "expression" + "@value": "life science" }, { - "@value": "life science" - }, - { - "@value": "comparative genomics" - }, - { - "@value": "image collection" - }, - { - "@value": "movie" - }, - { - "@value": "functional genomics" - }, - { - "@value": "blast" - }, - { - "@value": "image" - }, - { - "@value": "genetics" - }, - { - "@value": "video resource" - }, - { - "@value": "phenotype" + "@value": "systems biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://flybase.org/" + "@id": "https://metacyc.org" }, - "https://bioregistry.io/schema/#0000005": "FBgn0011293", - "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/$1", - "https://bioregistry.io/schema/#0000008": "^FB\\w{2}\\d{7}$", + "https://bioregistry.io/schema/#0000005": "CPD-10330", + "https://bioregistry.io/schema/#0000006": "https://metacyc.org/compound?orgid=META&id=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+_.%-:]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "FlyBase" - }, - { - "@value": "FB" - } - ], - "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/", + "https://bioregistry.io/schema/#0000023": { + "@value": "MetaCyc" + }, + "https://bioregistry.io/schema/#0000024": "https://metacyc.org/compound?orgid=META&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://flybase.org/reports/FBgn0011293" + "@id": "https://metacyc.org/compound?orgid=META&id=CPD-10330" }, "https://bioregistry.io/schema/#0000029": { - "@value": "flybase" + "@value": "metacyc.compound" } }, { - "@id": "https://bioregistry.io/registry/vfdb.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.", + "@id": "https://bioportal.bioontology.org/ontologies/CHEBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VFDB Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/vfdb.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mgc.ac.cn/VFs/" - }, - "https://bioregistry.io/schema/#0000005": "VFG2154", - "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=VFG2154" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vfdb.gene" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/hms.lincs.antibody", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", + "@id": "https://www.re3data.org/repository/r3d100010219", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HMS Library of Integrated Network-based Cellular Signatures Antibodies" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lincs.hms.harvard.edu/db/antibodies/" - }, - "https://bioregistry.io/schema/#0000005": "80001", - "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/antibodies/$1", - "https://bioregistry.io/schema/#0000008": "^8\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/antibodies/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://lincs.hms.harvard.edu/db/antibodies/80001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hms.lincs.antibody" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/pubchem.bioassay", + "@id": "https://bioregistry.io/registry/ligea", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/pubchem" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "Polymorphism and mutation databases", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI PubChem database of bioassay records" + "@value": "Cancer cell LInes GEne fusions portAl" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay" - }, - { - "@id": "https://registry.identifiers.org/registry/pubchem.bioassay" - }, - { - "@id": "http://edamontology.org/data_2638" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay" - }, - { - "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=pcassay" + "@id": "http://hpc-bioinformatics.cineca.it/fusion/main" }, - "https://bioregistry.io/schema/#0000005": "1018", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "CCLE_867", + "https://bioregistry.io/schema/#0000006": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "pubchem.aid" - }, - { - "@value": "pubchem.assay" - } - ], - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/bioassay/", + "https://bioregistry.io/schema/#0000024": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/bioassay/1018" + "@id": "http://hpc-bioinformatics.cineca.it/fusion/cell_line/CCLE_867" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.bioassay" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.68b03f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ligea" } }, { - "@id": "https://www.uniprot.org/database/DB-0095", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS", + "@id": "https://www.re3data.org/repository/r3d100010671", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bg7bb6", + "@id": "https://fairsharing.org/FAIRsharing.3zqvaf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/rbk", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/informatics-isi-edu/gudmap-rbk/wiki/Create-citable-datasets" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rebuilding a Kidney" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/rbk" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.78d3ad" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RBK" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "cell biology" - }, - { - "@value": "developmental biology" - }, - { - "@value": "genomics" - }, - { - "@value": "molecular biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.rebuildingakidney.org/" - }, - "https://bioregistry.io/schema/#0000005": "Q-2958", - "https://bioregistry.io/schema/#0000006": "https://www.rebuildingakidney.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.rebuildingakidney.org/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.rebuildingakidney.org/id/Q-2958" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rbk" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mpio", + "@id": "https://www.re3data.org/repository/r3d100010910", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://www.wikidata.org/entity/P1550", + "@id": "https://fairsharing.org/FAIRsharing.8zqzm9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/gabi", + "@id": "http://aber-owl.net/ontology/GEXO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.pxr7x2", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/owl", + "@id": "https://bioregistry.io/registry/sbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. ", + "http://purl.org/dc/terms/description": "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBI-BioModels/SBO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Web Ontology Language" + "@value": "Systems Biology Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl" + "@id": "https://bioportal.bioontology.org/ontologies/SBO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/owl" + "@id": "https://registry.identifiers.org/registry/sbo" }, { - "@id": "https://fairsharing.org/FAIRsharing.atygwy" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://aber-owl.net/ontology/SBO" + }, { - "@value": "ontology and terminology" + "@id": "https://fairsharing.org/FAIRsharing.s19src" }, { - "@value": "ontology" + "@id": "https://www.obofoundry.org/ontology/sbo" }, { - "@value": "subject agnostic" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo" }, { - "@value": "computer science" + "@id": "https://registry.bio2kg.org/resource/sbo" }, { - "@value": "informatics" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo" + }, + { + "@id": "http://www.ontobee.org/ontology/SBO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SBO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "systems biology" + }, + { + "@value": "ontology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/owl-features/" + "@id": "http://www.ebi.ac.uk/sbo/" }, - "https://bioregistry.io/schema/#0000005": "Ontology", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2002/07/owl#$1", + "https://bioregistry.io/schema/#0000005": "0000485", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SBO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://triplydb.com/w3c/owl/download.trig.gz" + "@id": "http://purl.obolibrary.org/obo/sbo.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/proco" + }, + { + "@id": "https://bioregistry.io/registry/scdo" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5699-0515" + "@id": "https://orcid.org/0000-0003-0705-9809" }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2002/07/owl#", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SBO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2002/07/owl#Ontology" + "@id": "http://purl.obolibrary.org/obo/SBO_0000485" }, "https://bioregistry.io/schema/#0000029": { - "@value": "owl" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2153", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://orcid.org/0000-0001-8123-5351", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Adnan Malik" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "amalik@ebi.ac.uk" + "@value": "sbo" } }, { - "@id": "https://bioregistry.io/registry/inhand", + "@id": "https://bioregistry.io/registry/wikipathways.vocab", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.", + "http://purl.org/dc/terms/description": "An ontology supporting data modeling in WikiPathways", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The International Harmonization of Nomenclature and Diagnostic criteria" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.9gqfpm" + "@value": "WikiPathways Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS" + } + ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "biomedical science" + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.goreni.org/gr3_nomenclature.php" + "@id": "http://www.wikipathways.org" + }, + "https://bioregistry.io/schema/#0000005": "DataNode", + "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/WIKIPATHWAYS/225/wikipathways.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7542-0286" + }, + "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23DataNode" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "inhand" + "@value": "wikipathways.vocab" } }, { - "@id": "https://registry.identifiers.org/registry/pscdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/rex", + "@id": "https://bioregistry.io/registry/medgen", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - } - ], + "http://purl.org/dc/terms/description": "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Physico-chemical process" + "@value": "Human Medical Genetics" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/REX" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex" - }, - { - "@id": "https://registry.bio2kg.org/resource/rex" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g0a7s0" - }, - { - "@id": "https://www.obofoundry.org/ontology/rex" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/REX" - }, - { - "@id": "http://aber-owl.net/ontology/REX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/REX" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/medgen" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen" }, { - "@value": "biochemistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen" }, { - "@value": "chemistry" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chebi/" - }, - "https://bioregistry.io/schema/#0000005": "0000512", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/REX_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/rex.owl" + "@id": "https://www.ncbi.nlm.nih.gov/medgen/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N52cf789d038440fa83be37820122e2cb" + "https://bioregistry.io/schema/#0000005": "760050", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/medgen/$1", + "https://bioregistry.io/schema/#0000008": "^[CN]*\\d{4,7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/medgen/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/medgen/760050" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/REX_", "https://bioregistry.io/schema/#0000029": { - "@value": "rex" - } - }, - { - "@id": "_:N52cf789d038440fa83be37820122e2cb", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chebi Administrators" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "chebi-help@ebi.ac.uk" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "medgen" } }, { - "@id": "http://aber-owl.net/ontology/GAZ", + "@id": "http://www.ontobee.org/ontology/GO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY", + "@id": "http://www.wikidata.org/entity/P595", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi", + "@id": "https://www.obofoundry.org/ontology/oarcs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/registry/tair", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/tair.gene" } }, { - "@id": "https://www.re3data.org/repository/r3d100010676", + "@id": "https://bioregistry.io/registry/pba", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the primate brain", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Primate Brain Atlas" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.blueprintnhpatlas.org/" + }, + "https://bioregistry.io/schema/#0000005": "128011350", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/pba/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/pba/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/pba/128011350" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pba" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CIO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma", + "@id": "https://registry.identifiers.org/registry/linguist", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule", + "@id": "http://www.ontobee.org/ontology/MCRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/amoebadb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.proteome", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UniProt provides proteome sets of proteins whose genomes have been completely sequenced.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/uniprot" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Proteomes" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/proteomes" - }, - "https://bioregistry.io/schema/#0000005": "UP000005640", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/proteomes/$1", - "https://bioregistry.io/schema/#0000008": "^UP\\d{9}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/proteomes/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/proteomes/UP000005640" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.proteome" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ardb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pn1sr5", + "@id": "http://www.ontobee.org/ontology/MP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA", + "@id": "https://www.uniprot.org/database/DB-0139", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://www.obofoundry.org/ontology/ontoneo", + "@id": "https://www.obofoundry.org/ontology/mao", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF", + "@id": "https://registry.identifiers.org/registry/aop.stressor", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb", + "@id": "http://aber-owl.net/ontology/PORO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY", + "@id": "http://edamontology.org/data_2613", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.identifiers.org/registry/lrg", + "@id": "https://registry.identifiers.org/registry/mirbase.mature", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/zeco", + "@id": "https://www.re3data.org/repository/r3d100011222", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/pride", + "@id": "https://bioregistry.io/registry/skosxl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.", + "http://purl.org/dc/terms/description": "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PRIDE-Utilities/pride-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PRIDE Controlled Vocabulary" + "@value": "Simple Knowledge Organization System eXtension for Labels" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.uniprot.org/database/DB-0130" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.e1byny" - }, - { - "@id": "https://registry.bio2kg.org/resource/pride" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE" + "@value": "semantic web" }, { - "@id": "https://registry.identifiers.org/registry/pride" + "@value": "metadata" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride" + "@value": "data model" }, { - "@id": "http://aber-owl.net/ontology/PRIDE" - }, + "@value": "skos" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.w3.org/2008/05/skos-xl#" + }, + "https://bioregistry.io/schema/#0000005": "literalForm", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2008/05/skos-xl#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2008/05/skos-xl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/2008/05/skos-xl#literalForm" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "skosxl" + } + }, + { + "@id": "https://bioregistry.io/registry/miriam.collection", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride" + "@id": "https://bioregistry.io/registry/miriam" }, { - "@id": "https://www.re3data.org/repository/r3d100010137" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MIRIAM Registry collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection" }, { - "@value": "proteomics" + "@id": "https://registry.identifiers.org/registry/miriam.collection" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/PRIDE-Utilities/pride-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000006", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PRIDE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6579-6941" + "@id": "https://www.ebi.ac.uk/miriam/" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PRIDE_", + "https://bioregistry.io/schema/#0000005": "00000008", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/miriam/main/$1", + "https://bioregistry.io/schema/#0000008": "^000\\d{5}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/miriam/main/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PRIDE_0000006" + "@id": "https://www.ebi.ac.uk/miriam/main/00000008" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pride" + "@value": "miriam.collection" } }, { - "@id": "https://bioregistry.io/registry/ncro", + "@id": "https://bioregistry.io/registry/brenda.ligand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for non-coding RNA, both of biological origin, and engineered.", + "http://purl.org/dc/terms/description": "Information for ligands in the BRENDA database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OmniSearch/ncro" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Non-Coding RNA Ontology" + "@value": "BRENDA Ligand" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/NCRO" - }, - { - "@id": "https://www.obofoundry.org/ontology/ncro" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO" - }, - { - "@id": "http://aber-owl.net/ontology/NCRO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vppyga" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro" - }, - { - "@id": "http://www.ontobee.org/ontology/NCRO" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "chemistry" }, { - "@value": "genomics" + "@value": "structrual bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://omnisearch.soc.southalabama.edu/w/index.php/Ontology" - }, - "https://bioregistry.io/schema/#0000005": "0002927", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ncro.owl" + "@id": "https://www.brenda-enzymes.de/ligand.php" }, + "https://bioregistry.io/schema/#0000005": "278", + "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2408-2883" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCRO_", + "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NCRO_0002927" + "@id": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=278" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncro" + "@value": "brenda.ligand" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot", + "@id": "http://www.wikidata.org/entity/P6689", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.bio2kg.org/resource/pw", + "@id": "https://bioregistry.io/registry/glycomapsdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database of GlycoMaps containing 2585 conformational maps.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GlycoMapsDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/glycomapsdb" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.glycosciences.de/modeling/glycomapsdb/" + }, + "https://bioregistry.io/schema/#0000005": "6819", + "https://bioregistry.io/schema/#0000006": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=6819" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "glycomapsdb" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kay31r", + "@id": "https://bioregistry.io/metaregistry/biocontext/TADS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dyqz3y", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/registry/nlx.anat", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXANAT covers anatomy terms. Almost all terms are also in Uberon.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuroLex Anatomy" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "anatomy" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://scicrunch.org/scicrunch/interlex/dashboard" + }, + "https://bioregistry.io/schema/#0000005": "090201", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_090201" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.anat" } }, { - "@id": "https://fairsharing.org/FAIRsharing.vxz9pn", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO", + "@id": "https://registry.identifiers.org/registry/seed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED", + "@id": "https://registry.identifiers.org/registry/ricenetdb.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ", + "@id": "http://aber-owl.net/ontology/FBBT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO", + "@id": "http://aber-owl.net/ontology/XLMOD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/sugarbind", + "@id": "https://fairsharing.org/FAIRsharing.175hsz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE", + "@id": "https://registry.identifiers.org/registry/tol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-3207-2434", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Wishart" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "david.wishart@ualberta.ca" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONS", + "@id": "https://registry.identifiers.org/registry/clinvar.submitter", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.w2eeqr", + "@id": "https://www.re3data.org/repository/r3d100010676", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281", + "@id": "https://registry.bio2kg.org/resource/panther", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn", + "@id": "https://bioregistry.io/registry/stap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB).", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Statistical Torsional Angles Potentials" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ja9cdq" + }, + { + "@id": "https://registry.identifiers.org/registry/stap" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/STAP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "statistics" + }, + { + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://psb.kobic.re.kr/STAP/refinement/" + }, + "https://bioregistry.io/schema/#0000005": "1a24", + "https://bioregistry.io/schema/#0000006": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=1a24" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "stap" } }, { - "@id": "https://www.re3data.org/repository/r3d100012265", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128", + "@id": "https://bioportal.bioontology.org/ontologies/DIDEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/come", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/vann", + "@id": "https://bioregistry.io/registry/pactr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes.", + "http://purl.org/dc/terms/description": "The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A vocabulary for annotating vocabulary descriptions" + "@value": "Pan African Clinical Trials Registry" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://vocab.org/vann/" + "@id": "https://pactr.samrc.ac.za/" }, - "https://bioregistry.io/schema/#0000005": "usageNote", - "https://bioregistry.io/schema/#0000006": "https://vocab.org/vann/$1", + "https://bioregistry.io/schema/#0000005": "PACTR202304525632216", + "https://bioregistry.io/schema/#0000008": "^PACTR\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nf7642f249190476898c7f16d563ba940" - }, - "https://bioregistry.io/schema/#0000024": "https://vocab.org/vann/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://vocab.org/vann/usageNote" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "vann" - } - }, - { - "@id": "_:Nf7642f249190476898c7f16d563ba940", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ian Davis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nospam@iandavis.com" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000566", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/obib", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "pactr" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio", + "@id": "https://registry.identifiers.org/registry/iceberg.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/glycopost", + "@id": "https://bioregistry.io/registry/ecocyc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines.", + "http://purl.org/dc/terms/description": "EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlycoPOST" + "@value": "EcoCyc" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/glycopost" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc" }, { - "@id": "https://fairsharing.org/FAIRsharing.2y1KMt" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.re3data.org/repository/r3d100011277" + }, { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.65dmtr" }, { - "@value": "glycomics" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "biology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://glycopost.glycosmos.org" + "@id": "https://ecocyc.org/" }, - "https://bioregistry.io/schema/#0000005": "GPST000024", - "https://bioregistry.io/schema/#0000006": "https://glycopost.glycosmos.org/entry/$1", - "https://bioregistry.io/schema/#0000008": "^GPST[0-9]{6}$", + "https://bioregistry.io/schema/#0000005": "AICARTRANSIMPCYCLO-CPLX", + "https://bioregistry.io/schema/#0000006": "https://ecocyc.org/gene?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://glycopost.glycosmos.org/entry/", + "https://bioregistry.io/schema/#0000024": "https://ecocyc.org/gene?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://glycopost.glycosmos.org/entry/GPST000024" + "@id": "https://ecocyc.org/gene?id=AICARTRANSIMPCYCLO-CPLX" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glycopost" + "@value": "ecocyc" } }, { - "@id": "https://bioregistry.io/registry/cabri", + "@id": "https://bioregistry.io/registry/ctd.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Access to Biological Resources and Information Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.qx2rvz" - }, - { - "@id": "https://registry.identifiers.org/registry/cabri" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI" - }, + "http://purl.org/dc/terms/description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "http://edamontology.org/data_2380" + "@id": "https://bioregistry.io/registry/ctd" } ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "virology" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CTD Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "microbiology" + "@id": "https://registry.identifiers.org/registry/ctd.gene" }, { - "@value": "molecular biology" + "@id": "https://www.uniprot.org/database/DB-0140" }, { - "@value": "medical microbiology" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE" }, { - "@value": "applied microbiology" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE" }, { - "@value": "molecular microbiology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cabri.org/" + "@id": "http://ctdbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "101", + "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=gene&acc=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbigene" }, - "https://bioregistry.io/schema/#0000005": "dsmz_mutz-id:ACC 291", - "https://bioregistry.io/schema/#0000006": "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]", - "https://bioregistry.io/schema/#0000008": "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4694-3883" + "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=gene&acc=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ctdbase.org/detail.go?type=gene&acc=101" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cabri:", "https://bioregistry.io/schema/#0000029": { - "@value": "cabri" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ecoliwiki", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sabiork.ec", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZEA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "ctd.gene" } }, { - "@id": "https://registry.identifiers.org/registry/proglyc", + "@id": "https://registry.bio2kg.org/resource/genatlas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/limore", + "@id": "https://bioregistry.io/registry/hms.lincs.antibody", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Liver Cancer Model Repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE" + "@value": "HMS Library of Integrated Network-based Cellular Signatures Antibodies" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.picb.ac.cn/limore/home" + "@id": "https://lincs.hms.harvard.edu/db/antibodies/" }, - "https://bioregistry.io/schema/#0000005": "Li7", - "https://bioregistry.io/schema/#0000006": "https://www.picb.ac.cn/limore/cellLines/single?para=$1", + "https://bioregistry.io/schema/#0000005": "80001", + "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/antibodies/$1", + "https://bioregistry.io/schema/#0000008": "^8\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.picb.ac.cn/limore/cellLines/single?para=", + "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/antibodies/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.picb.ac.cn/limore/cellLines/single?para=Li7" + "@id": "https://lincs.hms.harvard.edu/db/antibodies/80001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "limore" + "@value": "hms.lincs.antibody" } }, { - "@id": "https://bioregistry.io/registry/envipath", + "@id": "https://bioregistry.io/registry/gendis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products.", + "http://purl.org/dc/terms/description": "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "enviPath" + "@value": "Genomic Distribution of structural Superfamilies" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.g0c5qn" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/gendis" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/envipath" + "@value": "classification" }, { - "@id": "https://www.re3data.org/repository/r3d100012715" + "@value": "genome" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "environmental science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://envipath.org/" + "@id": "http://caps.ncbs.res.in/gendis/home.html" }, - "https://bioregistry.io/schema/#0000005": "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea", - "https://bioregistry.io/schema/#0000006": "https://envipath.org/package/$1", - "https://bioregistry.io/schema/#0000008": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0533-3368" + "https://bioregistry.io/schema/#0000005": "46946", + "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://envipath.org/package/", + "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://envipath.org/package/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea" + "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=46946" }, "https://bioregistry.io/schema/#0000029": { - "@value": "envipath" + "@value": "gendis" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK", + "@id": "http://aber-owl.net/ontology/ICD10PCS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://edamontology.org/data_1089", + "@id": "https://registry.identifiers.org/registry/bgee.stage", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/sitex", + "@id": "https://registry.identifiers.org/registry/prints", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLO", + "@id": "https://registry.identifiers.org/registry/pride.project", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/eco", + "@id": "http://www.ontobee.org/ontology/MA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://aber-owl.net/ontology/ECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/fyeco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.", + "http://purl.org/dc/terms/description": "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/evidenceontology/evidenceontology" + "@id": "https://github.com/pombase/fypo" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Evidence ontology" + "@value": "Fission Yeast Experimental Conditions Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco" - }, - { - "@id": "https://registry.identifiers.org/registry/eco" - }, - { - "@id": "https://bartoc.org/en/node/1028" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECO" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco" - }, - { - "@id": "http://aber-owl.net/ontology/ECO" - }, - { - "@id": "http://www.ontobee.org/ontology/ECO" - }, - { - "@id": "http://www.wikidata.org/entity/P3811" - }, - { - "@id": "https://www.obofoundry.org/ontology/eco" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wvpgwn" - }, - { - "@id": "https://registry.bio2kg.org/resource/eco" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "computational biology" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "life science" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.evidenceontology.org" + "@id": "https://github.com/pombase/fypo" }, - "https://bioregistry.io/schema/#0000005": "0007807", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECO_$1", + "https://bioregistry.io/schema/#0000005": "0000003", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/eco.owl" - }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7628-5565" + "@id": "https://orcid.org/0000-0001-6330-7526" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ECO_0007807" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eco" + "@value": "fyeco" } }, { - "@id": "https://bioregistry.io/registry/wbls", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f0bxfg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/aop.relationships", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology about the development and life stages of the C. elegans", + "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/c-elegans-development-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "C. elegans development ontology" + "@value": "AOPWiki (Key Event Relationship)" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/WB-LS" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls" - }, - { - "@id": "https://registry.bio2kg.org/resource/wbls" - }, - { - "@id": "http://www.ontobee.org/ontology/WBls" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.sm90nh" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS" + "@id": "https://registry.identifiers.org/registry/aop.relationships" }, { - "@id": "http://aber-owl.net/ontology/WBLS" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS" }, { - "@id": "https://www.obofoundry.org/ontology/wbls" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships" } ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "worm" - }, - { - "@value": "developmental biology" - }, - { - "@value": "development" - }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://aopwiki.org/" + }, + "https://bioregistry.io/schema/#0000005": "5", + "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/relationships/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/relationships/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://aopwiki.org/relationships/5" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "aop.relationships" + } + }, + { + "@id": "https://bioregistry.io/registry/noncodev4.rna", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NONCODE v4 Transcript" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA" }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/noncodev4.rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/c-elegans-development-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000690", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBls_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/wbls.owl" + "@id": "http://www.bioinfo.org/NONCODEv4/" }, + "https://bioregistry.io/schema/#0000005": "NONHSAT000001", + "https://bioregistry.io/schema/#0000006": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^NONHSAT\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9076-6015" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "WBls" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBls_", + "https://bioregistry.io/schema/#0000024": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/WBls_0000690" + "@id": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=NONHSAT000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wbls" + "@value": "noncodev4.rna" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB", + "@id": "https://bioportal.bioontology.org/ontologies/ZFS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://orcid.org/0000-0002-1548-3290", + "@id": "https://registry.identifiers.org/registry/utrdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://orcid.org/0000-0002-0956-8634", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Thorsten Henrich" + "@value": "Terry Hayamizu" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "henrich@embl.de" + "@value": "Terry.Hayamizu@jax.org" } }, { - "@id": "https://bioregistry.io/registry/csp", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_341", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SIBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/utrdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains.", + "http://purl.org/dc/terms/description": "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Computer Retrieval of Information on Science Projects Thesaurus" + "@value": "UTRdb" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/utrdb" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://utrdb.cloud.ba.infn.it/utrdb/index_107.html" + }, + "https://bioregistry.io/schema/#0000005": "5UTR_107_ENST00000517291.2", + "https://bioregistry.io/schema/#0000006": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1", + "https://bioregistry.io/schema/#0000008": "^([3-5][A-Z])\\w+[^A-Z][0-9]$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=5UTR_107_ENST00000517291.2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "utrdb" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_343", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/registry/pombase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PomBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.1evfpc" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase" }, { - "@id": "http://aber-owl.net/ontology/CRISP" + "@id": "https://registry.identifiers.org/registry/pombase" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRISP" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.8jsya3" + }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/pombase" }, { - "@value": "chemical biology" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase" }, { - "@value": "social science" + "@id": "https://www.re3data.org/repository/r3d100011478" }, { - "@value": "anatomy" + "@id": "https://www.uniprot.org/database/DB-0031" }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase" }, { - "@value": "biomedical science" + "@id": "http://www.wikidata.org/entity/P6245" }, { - "@value": "medicine" + "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://web.archive.org/web/20091223034048/http://crisp.cit.nih.gov/Thesaurus/index.htm" + "@id": "https://www.pombase.org/" }, - "https://bioregistry.io/schema/#0000005": "2004-2820", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/CSP/$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N3b57495f01bb4011887043a296cc3f83" + "https://bioregistry.io/schema/#0000005": "SPCC13B11.01", + "https://bioregistry.io/schema/#0000006": "https://www.pombase.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^S\\w+(\\.)?\\w+(\\.)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "PomBase" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "CRISP Thesaurus" - }, - { - "@value": "CSP2005" - }, - { - "@value": "CRISP Thesaurus, 2006" - }, - { - "@value": "CRISP" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/CSP/", + "https://bioregistry.io/schema/#0000024": "https://www.pombase.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/CSP/2004-2820" + "@id": "https://www.pombase.org/gene/SPCC13B11.01" }, "https://bioregistry.io/schema/#0000029": { - "@value": "csp" + "@value": "pombase" } }, { - "@id": "_:N3b57495f01bb4011887043a296cc3f83", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anita Ghebeles" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "af8d@nih.gov" + "@id": "https://fairsharing.org/FAIRsharing.kd39j4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_366", + "@id": "http://www.ontobee.org/ontology/PECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/mao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment.", + "@id": "https://www.uniprot.org/database/DB-0172", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Multiple alignment" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.obofoundry.org/ontology/mao" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAO" - }, - { - "@id": "https://registry.bio2kg.org/resource/mao" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "alignment" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "sequence" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html" - }, - "https://bioregistry.io/schema/#0000005": "MAO:0000061", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAO_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N570e518956434d898c70e01934637874" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "mao" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "_:N570e518956434d898c70e01934637874", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Julie Thompson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "julie@igbmc.u-strasbg.fr" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://aber-owl.net/ontology/MFOEM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { @@ -66116,8358 +59921,6323 @@ } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GENO", + "@id": "https://www.obofoundry.org/ontology/mmusdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/mycobank", + "@id": "https://fairsharing.org/FAIRsharing.qvxhb1", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery", + "@id": "https://registry.identifiers.org/registry/arrayexpress", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy", + "@id": "https://bioportal.bioontology.org/ontologies/STY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.re3data.org/repository/r3d100012189", + "@id": "https://registry.identifiers.org/registry/ncbigene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.uniprot.org/database/DB-0214", + "@id": "https://fairsharing.org/FAIRsharing.31apg2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.fj07xj", + "@id": "https://fairsharing.org/FAIRsharing.n66krd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P235", + "@id": "https://registry.identifiers.org/registry/pharmgkb.drug", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/1915", + "@id": "https://registry.bio2kg.org/resource/aceview.worm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/phosphopoint.kinase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information.", + "@id": "https://registry.bio2kg.org/resource/homd.taxon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhosphoPoint Kinase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE" - }, - { - "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://kinase.bioinformatics.tw/" - }, - "https://bioregistry.io/schema/#0000005": "AURKA", - "https://bioregistry.io/schema/#0000006": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/phosphopoint.kinase:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phosphopoint.kinase" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/co_357", + "@id": "https://bioregistry.io/registry/homd.taxon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.", + "http://purl.org/dc/terms/description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Woody Plant Ontology ontology" + "@value": "Human Oral Microbiome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_357" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON" }, { - "@id": "https://cropontology.org/ontology/CO_357" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD" }, { - "@id": "https://fairsharing.org/FAIRsharing.2b04ae" + "@id": "https://registry.identifiers.org/registry/homd.taxon" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357" + "@id": "https://registry.bio2kg.org/resource/homd.taxon" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" - }, - { - "@value": "botany" + "@value": "microbial" }, { - "@value": "life science" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology" + "@id": "http://www.homd.org/index.php" }, - "https://bioregistry.io/schema/#0000005": "1000290", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_357:$1", + "https://bioregistry.io/schema/#0000005": "811", + "https://bioregistry.io/schema/#0000006": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology/owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1877-1703" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_357:", + "https://bioregistry.io/schema/#0000024": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_357:1000290" + "@id": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=811" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_357" - } - }, - { - "@id": "https://orcid.org/0000-0002-8411-3226", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stefanie Seltmann" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "stefanie.seltmann@ibmt.fraunhofer.de" + "@value": "homd.taxon" } }, { - "@id": "https://bioregistry.io/registry/otol", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for an entity in open tree of life", + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Tree of Life" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P9157" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://tree.opentreeoflife.org" - }, - "https://bioregistry.io/schema/#0000005": "3905431", - "https://bioregistry.io/schema/#0000006": "https://tree.opentreeoflife.org/taxonomy/browse?id=$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://tree.opentreeoflife.org/taxonomy/browse?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://tree.opentreeoflife.org/taxonomy/browse?id=3905431" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "otol" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ncgh1j", + "@id": "https://www.obofoundry.org/ontology/ohpi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/bco", + "@id": "https://bioregistry.io/registry/vectorbase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.", + "http://purl.org/dc/terms/description": "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BiodiversityOntologies/bco" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biological Collections Ontology" + "@value": "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco" - }, - { - "@id": "https://www.obofoundry.org/ontology/bco" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase" }, { - "@id": "https://fairsharing.org/FAIRsharing.8ktkqy" + "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase" }, { - "@id": "http://aber-owl.net/ontology/BCO" + "@id": "https://registry.identifiers.org/registry/vectorbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCO" + "@id": "https://fairsharing.org/FAIRsharing.3etvdn" }, { - "@id": "http://www.ontobee.org/ontology/BCO" + "@id": "https://www.re3data.org/repository/r3d100010880" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/BCO" + "@id": "https://registry.bio2kg.org/resource/vectorbase" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "comparative genomics" }, { - "@value": "biodiversity" + "@value": "population dynamics" }, { - "@value": "ontology" + "@value": "functional genomics" }, { - "@value": "metagenomics" + "@value": "genomics" }, { - "@value": "ecology" + "@value": "population genetics" }, { - "@value": "taxonomy" + "@value": "protein" + }, + { + "@value": "gene" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/BiodiversityOntologies/bco" - }, - "https://bioregistry.io/schema/#0000005": "0000081", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BCO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/bco.owl" + "@id": "https://www.vectorbase.org/" }, + "https://bioregistry.io/schema/#0000005": "ISCW007415", + "https://bioregistry.io/schema/#0000006": "https://vectorbase.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^\\D{4}\\d{6}(\\-\\D{2})?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/fovt" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8815-0078" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BCO_", + "https://bioregistry.io/schema/#0000024": "https://vectorbase.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/BCO_0000081" + "@id": "https://vectorbase.org/gene/ISCW007415" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bco" + "@value": "vectorbase" } }, { - "@id": "https://bioregistry.io/registry/coconut", + "@id": "http://www.ontobee.org/ontology/MFMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cmd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010616", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "http://aber-owl.net/ontology/ICD10", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.284e1z", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/genetree", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2870", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.162003", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ecoportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/homd.seq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/oma.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties.", + "http://purl.org/dc/terms/description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COlleCtion of Open Natural ProdUcTs" + "@value": "OMA Protein" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "organic chemistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN" }, { - "@value": "natural producs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein" }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/oma.protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://coconut.naturalproducts.net" + "@id": "https://omabrowser.org/cgi-bin/gateway.pl" }, - "https://bioregistry.io/schema/#0000005": "CNP0171505", - "https://bioregistry.io/schema/#0000006": "https://coconut.naturalproducts.net/compound/coconut_id/$1", - "https://bioregistry.io/schema/#0000008": "^CNP\\d{7}$", + "https://bioregistry.io/schema/#0000005": "HUMAN16963", + "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{5}\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://coconut.naturalproducts.net/compound/coconut_id/", + "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://coconut.naturalproducts.net/compound/coconut_id/CNP0171505" + "@id": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=HUMAN16963" }, "https://bioregistry.io/schema/#0000029": { - "@value": "coconut" + "@value": "oma.protein" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM", + "@id": "http://edamontology.org/data_1161", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/oba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.", + "@id": "https://fairsharing.org/FAIRsharing.zwtww5", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/bio-attribute-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Biological Attributes" + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3098", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/radiomics", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OBA" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mp0rwf" - }, - { - "@id": "https://www.obofoundry.org/ontology/oba" - }, - { - "@id": "http://www.ontobee.org/ontology/OBA" - }, - { - "@id": "http://aber-owl.net/ontology/OBA" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/bio-attribute-ontology" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Radiomics Ontology" }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBA_$1", - "https://bioregistry.io/schema/#0000008": "^(VT)?\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/oba.owl" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioportal.bioontology.org/ontologies/RO" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/fovt" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.radiomics.org/RO" }, + "https://bioregistry.io/schema/#0000005": "LK99", + "https://bioregistry.io/schema/#0000006": "http://www.radiomics.org/RO/$1", + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" + "@id": "https://orcid.org/0000-0001-6183-4429" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBA_", + "https://bioregistry.io/schema/#0000024": "http://www.radiomics.org/RO/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OBA_0000001" + "@id": "http://www.radiomics.org/RO/LK99" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oba" + "@value": "radiomics" } }, { - "@id": "https://orcid.org/0000-0002-9881-1017", - "http://www.w3.org/2000/01/rdf-schema#label": [ + "@id": "https://registry.identifiers.org/registry/peptideatlas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010626", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HGNC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_2654", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/datanator.metabolite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "William Hogan" + "@id": "https://bioregistry.io/registry/datanator" }, { - "@value": "Bill Hogan" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hoganwr@gmail.com" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Datanator Metabolite" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/datanator.metabolite" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://datanator.info/" + }, + "https://bioregistry.io/schema/#0000005": "OUYCCCASQSFEME-MRVPVSSYSA-N", + "https://bioregistry.io/schema/#0000006": "https://www.datanator.info/metabolite/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z\\-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.datanator.info/metabolite/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.datanator.info/metabolite/OUYCCCASQSFEME-MRVPVSSYSA-N" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "datanator.metabolite" } }, { - "@id": "http://www.wikidata.org/entity/P299", + "@id": "https://bioregistry.io/schema/#0000016", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has canonical" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000001" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICD10", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.wikidata.org/entity/P2926", + "@id": "https://registry.identifiers.org/registry/merops.inhibitor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012074", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cellrepo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.CugtbQ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/exac.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P496", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://orcid.org/0000-0001-5424-1393", + "@id": "https://fairsharing.org/FAIRsharing.ca48xs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/MIAPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gnpis", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/drsanv0", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Marilyn Safran" + "@value": "AnVIL DRS" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "marilyn.safran@weizmann.ac.il" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/drs.anv0" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.gov/" + }, + "https://bioregistry.io/schema/#0000005": "v2_1b0f158a-86e2-3887-b990-89e3cf2d9082", + "https://bioregistry.io/schema/#0000006": "https://data.terra.bio/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://data.terra.bio/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://data.terra.bio/ga4gh/drs/v1/objects/v2_1b0f158a-86e2-3887-b990-89e3cf2d9082" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drsanv0" } }, { - "@id": "http://www.wikidata.org/entity/P850", + "@id": "https://registry.identifiers.org/registry/nmrshiftdb2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0002-7073-9172", + "@id": "https://orcid.org/0000-0002-2390-6572", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Osumi-Sutherland" + "@value": "Maxwell L. Neal" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "davidos@ebi.ac.uk" + "@value": "maxneal@gmail.com" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl", + "@id": "https://fairsharing.org/FAIRsharing.d2d84f", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kj4pvk", + "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pubchem.compound", + "@id": "https://bioregistry.io/registry/pathbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/pubchem" - } - ], + "http://purl.org/dc/terms/description": "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubChem CID" + "@value": "PathBank" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.3xwMon" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND" + "@value": "endocrinology" }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.compound" + "@value": "biology" }, { - "@id": "http://www.wikidata.org/entity/P662" + "@value": "molecular biology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound" + "@value": "genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.qt3w7z" + "@value": "database management" }, { - "@id": "http://edamontology.org/data_2639" + "@value": "drug metabolism" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000140" + "@value": "medical informatics" }, { - "@id": "https://registry.identifiers.org/registry/pubchem.compound" + "@value": "microbiology" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound" + "@value": "transcriptomics" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem" + "@value": "systems biology" }, { - "@id": "https://www.re3data.org/repository/r3d100010129" + "@value": "plant genetics" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "metabolomics" + }, { - "@value": "virology" + "@value": "molecular microbiology" }, { - "@value": "epidemiology" + "@value": "animal genetics" }, { - "@value": "chemical" + "@value": "proteomics" }, { - "@value": "metabolite" + "@value": "bioinformatics" }, { - "@value": "structure" + "@value": "cheminformatics" }, { - "@value": "chemistry" + "@value": "cell biology" + }, + { + "@value": "human genetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/" + "@id": "https://pathbank.org" }, - "https://bioregistry.io/schema/#0000005": "100101", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/compound/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "SMP0000219", + "https://bioregistry.io/schema/#0000006": "https://pathbank.org/view/$1", + "https://bioregistry.io/schema/#0000008": "^(SMP|PW)\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "CID" - }, + "https://bioregistry.io/schema/#0000024": "https://pathbank.org/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pathbank.org/view/SMP0000219" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pathbank" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/gnd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/TAXRANK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://aber-owl.net/ontology/CPT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ecg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Electrocardiogram Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "PubChem_Compound_CID" + "@id": "https://bioportal.bioontology.org/ontologies/ECG" }, { - "@value": "Pubchem" + "@id": "http://aber-owl.net/ontology/ECG" }, { - "@value": "PUBCHEM_CID" - }, + "@id": "https://fairsharing.org/FAIRsharing.azr389" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "pubchem_id" + "@value": "biomedical science" }, { - "@value": "DSSTox_CID" + "@value": "ontology" } ], - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/compound/", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioportal.bioontology.org/ontologies/ECG" + }, + "https://bioregistry.io/schema/#0000005": "000000159", + "https://bioregistry.io/schema/#0000006": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ECG/12/ecg.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1719-1651" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ECGOntology" + }, + "https://bioregistry.io/schema/#0000024": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/compound/100101" + "@id": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_000000159" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.compound" + "@value": "ecg" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc", + "@id": "https://registry.identifiers.org/registry/tcdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD", + "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DIDEO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPD", + "@id": "https://fairsharing.org/FAIRsharing.dq78pn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS", + "@id": "https://orcid.org/0000-0002-9298-3168", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Liz Allen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "info@casrai.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p52pzj", + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/insdc.cds", + "@id": "https://bioregistry.io/registry/lgai.cede", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The coding sequence or protein identifiers as maintained in INSDC.", + "http://purl.org/dc/terms/description": "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "INSDC CDS" + "@value": "LG Chemical Entity Detection Dataset (LGCEDe)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/lgai.cede" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/insdc.cds" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://getentry.ddbj.nig.ac.jp" + "@id": "https://www.lgresearch.ai" }, - "https://bioregistry.io/schema/#0000005": "AAA35559", - "https://bioregistry.io/schema/#0000006": "http://getentry.ddbj.nig.ac.jp/getentry/dad/$1", - "https://bioregistry.io/schema/#0000008": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "LGCEDe-S-000002244", + "https://bioregistry.io/schema/#0000006": "https://s3.us-east-2.amazonaws.com/lg.cede/$1", + "https://bioregistry.io/schema/#0000008": "^LGCEDe-S-\\d{9}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/ncbiprotein" - }, - "https://bioregistry.io/schema/#0000024": "http://getentry.ddbj.nig.ac.jp/getentry/dad/", + "https://bioregistry.io/schema/#0000024": "https://s3.us-east-2.amazonaws.com/lg.cede/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://getentry.ddbj.nig.ac.jp/getentry/dad/AAA35559" + "@id": "https://s3.us-east-2.amazonaws.com/lg.cede/LGCEDe-S-000002244" }, "https://bioregistry.io/schema/#0000029": { - "@value": "insdc.cds" + "@value": "lgai.cede" } }, { - "@id": "https://bioregistry.io/registry/ndc", + "@id": "https://registry.bio2kg.org/resource/pmc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/door", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.", + "http://purl.org/dc/terms/description": "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Drug Code" + "@value": "Database for Prokaryotic Operons" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/NDC" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69" + "@id": "https://www.re3data.org/repository/r3d100014113" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc" + "@id": "https://registry.bio2kg.org/resource/door" }, { - "@id": "https://registry.identifiers.org/registry/ndc" + "@id": "https://registry.identifiers.org/registry/door" }, { - "@id": "http://www.wikidata.org/entity/P3640" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "dna" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.accessdata.fda.gov/scripts/cder/ndc/" + "@id": "http://csbl.bmb.uga.edu/DOOR/operon.php" }, - "https://bioregistry.io/schema/#0000005": "0002-1975-61", - "https://bioregistry.io/schema/#0000006": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+\\-\\d+\\-\\d+$", + "https://bioregistry.io/schema/#0000005": "1398574", + "https://bioregistry.io/schema/#0000006": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", + "https://bioregistry.io/schema/#0000024": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/0002-1975-61" + "@id": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=1398574" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ndc" + "@value": "door" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.metagenome", + "@id": "http://aber-owl.net/ontology/AFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS", + "@id": "https://bioregistry.io/registry/bioregistry.registry", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Bioregistry's meta-registry", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-5714-991X", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chris Stoeckert" + "@value": "Bioregistry Metaregistry" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "stoeckrt@pcbi.upenn.edu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dictybase.est", - "http://purl.org/dc/terms/isPartOf": { + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "data integration" + }, + { + "@value": "registry" + }, + { + "@value": "metaregistry" + }, + { + "@value": "data science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioregistry.io/metaregistry/" + }, + "https://bioregistry.io/schema/#0000005": "miriam", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/", + "https://bioregistry.io/schema/#0000027": { "@id": "https://bioregistry.io/metaregistry/miriam" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bioregistry.registry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-5424-1393", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Marilyn Safran" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "marilyn.safran@weizmann.ac.il" } }, { - "@id": "https://bioregistry.io/registry/ornaseq", + "@id": "https://bioregistry.io/registry/pandit", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An application ontology designed to annotate next-generation sequencing experiments performed on RNA.", + "http://purl.org/dc/terms/description": "PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/safisher/ornaseq" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of RNA Sequencing" + "@value": "Protein and Associated NucleotideDomains with Inferred Trees" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq" - }, - { - "@id": "http://aber-owl.net/ontology/ORNASEQ" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ" - }, - { - "@id": "https://www.obofoundry.org/ontology/ornaseq" + "@id": "https://www.re3data.org/repository/r3d100011232" }, { - "@id": "http://www.ontobee.org/ontology/ORNASEQ" + "@id": "https://registry.bio2kg.org/resource/pandit" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "dna" }, { - "@value": "ontology" + "@value": "protein" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://kim.bio.upenn.edu/software/ornaseq.shtml" + "@id": "http://www.ebi.ac.uk/goldman-srv/pandit" }, - "https://bioregistry.io/schema/#0000005": "0000010", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ORNASEQ_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ornaseq.owl" + "https://bioregistry.io/schema/#0000005": "PF00004", + "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/pfam" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8034-7685" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ORNASEQ_", + "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ORNASEQ_0000010" + "@id": "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=PF00004" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ornaseq" + "@value": "pandit" } }, { - "@id": "https://bioregistry.io/registry/hms.lincs.compound", + "@id": "https://bioregistry.io/registry/dg.4503", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", + "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HMS LINCS Compound" + "@value": "BioData Catalyst" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dg.4503" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lincs.hms.harvard.edu/db/sm/" + "@id": "https://gen3.biodatacatalyst.nhlbi.nih.gov" }, - "https://bioregistry.io/schema/#0000005": "10001-101", - "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/sm/$1", - "https://bioregistry.io/schema/#0000008": "^1\\d{4}-\\d{3}$", + "https://bioregistry.io/schema/#0000005": "0000ffeb-36e0-4a29-b21d-84423bda979d", + "https://bioregistry.io/schema/#0000006": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "hmsl_id" - }, - { - "@value": "HMS-LINCS" - } - ], - "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/sm/", + "https://bioregistry.io/schema/#0000024": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://lincs.hms.harvard.edu/db/sm/10001-101" + "@id": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/0000ffeb-36e0-4a29-b21d-84423bda979d" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hms.lincs.compound" + "@value": "dg.4503" } }, { - "@id": "https://bioregistry.io/registry/hagr.genage", + "@id": "https://bioregistry.io/registry/brenda.ligandgroup", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group.", + "http://purl.org/dc/terms/description": "Information for ligand groups (chemical classes).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Ageing Gene Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/genage" + "@value": "BRENDA Ligand Group" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "longevity" + "@value": "structrual bioinformatics" }, { - "@value": "aging" + "@value": "grouping" }, { - "@value": "genes" + "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genomics.senescence.info/genes/" + "@id": "https://www.brenda-enzymes.de/ligand.php" }, - "https://bioregistry.io/schema/#0000005": "0001", - "https://bioregistry.io/schema/#0000006": "http://genomics.senescence.info/genes/details.php?id=$1", + "https://bioregistry.io/schema/#0000005": "18030", + "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://genomics.senescence.info/genes/details.php?id=", + "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://genomics.senescence.info/genes/details.php?id=0001" + "@id": "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=18030" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hagr.genage" - } - }, - { - "@id": "https://orcid.org/0000-0002-8169-9049", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tiffany J. Callahan" + "@value": "brenda.ligandgroup" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORTH", + "@id": "https://www.re3data.org/repository/r3d100011663", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/fossilworks.journal", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for a journal article in the fossilworks website", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/fossilworks" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fossilworks Journal" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P7720" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://fossilworks.org" - }, - "https://bioregistry.io/schema/#0000005": "61467", - "https://bioregistry.io/schema/#0000006": "http://fossilworks.org/?a=referenceInfo&reference_no=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://fossilworks.org/?a=referenceInfo&reference_no=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://fossilworks.org/?a=referenceInfo&reference_no=61467" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fossilworks.journal" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://www.wikidata.org/entity/P557", + "@id": "https://www.re3data.org/repository/r3d100012458", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam", + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BCI-O", + "@id": "http://aber-owl.net/ontology/BCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4qyf0f", + "@id": "https://fairsharing.org/FAIRsharing.aqhv1y", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.gq1xtx", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://aber-owl.net/ontology/APAONTO", + "@id": "http://www.ontobee.org/ontology/REO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.uniprot.org/database/DB-0051", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/registry/ensembl.fungi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/ensembl" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011196" + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.fungi" + }, + { + "@id": "https://www.uniprot.org/database/DB-0148" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bg5xqs" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi" + }, + { + "@id": "https://registry.identifiers.org/registry/ensembl.fungi" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genome" + }, + { + "@value": "comparative genomics" + }, + { + "@value": "genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fungi.ensembl.org/" + }, + "https://bioregistry.io/schema/#0000005": "CADAFLAT00006211", + "https://bioregistry.io/schema/#0000006": "https://fungi.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z-a-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://fungi.ensembl.org/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://fungi.ensembl.org/id/CADAFLAT00006211" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensembl.fungi" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://orcid.org/0000-0002-3469-4923", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Janna Hastings" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "janna.hastings@gmail.com" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/COB", + "@id": "https://registry.identifiers.org/registry/swiss-model", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAS", + "@id": "https://registry.bio2kg.org/resource/gabi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/bindingdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wkdjpb", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://cropontology.org/ontology/CO_370", + "@id": "https://www.obofoundry.org/ontology/omit", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.65xkbs", + "@id": "https://bioregistry.io/registry/odor", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Odor Molecules DataBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR" + }, + { + "@id": "https://registry.identifiers.org/registry/odor" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://senselab.med.yale.edu/OdorDB" + }, + "https://bioregistry.io/schema/#0000005": "74", + "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/odor:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://senselab.med.yale.edu/OdorDB/Data/74/?db=5" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "odor" } }, { - "@id": "http://aber-owl.net/ontology/PDRO", + "@id": "https://fairsharing.org/FAIRsharing.d7f0a9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath", + "@id": "https://fairsharing.org/FAIRsharing.ex3fqk", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound", + "@id": "https://registry.identifiers.org/registry/unigene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene", + "@id": "https://fairsharing.org/FAIRsharing.wp0134", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/nlx.inv", + "@id": "https://bioregistry.io/registry/worfdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/nif" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "http://purl.org/dc/terms/description": "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Investigations" + "@value": "C. elegans ORFeome cloning project" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "data analysis" + "@id": "https://registry.identifiers.org/registry/worfdb" }, { - "@value": "funding agencies" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB" + }, + { + "@id": "https://registry.bio2kg.org/resource/worfdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "dna" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "http://worfdb.dfci.harvard.edu/" }, - "https://bioregistry.io/schema/#0000005": "90901", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "T01B6.1", + "https://bioregistry.io/schema/#0000006": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\.\\d+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXINV" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_", + "https://bioregistry.io/schema/#0000024": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_inv_90901" + "@id": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=T01B6.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.inv" + "@value": "worfdb" } }, { - "@id": "https://www.obofoundry.org/ontology/sepio", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/collection/0000001", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/empiar" - }, - { - "@id": "https://bioregistry.io/registry/bmrb" - }, - { - "@id": "https://bioregistry.io/registry/geo" - }, - { - "@id": "https://bioregistry.io/registry/ssbd.dataset" - }, - { - "@id": "https://bioregistry.io/registry/peptideatlas.dataset" - }, - { - "@id": "https://bioregistry.io/registry/cellimage" - }, - { - "@id": "https://bioregistry.io/registry/pdb" - }, - { - "@id": "https://bioregistry.io/registry/panorama" - }, - { - "@id": "https://bioregistry.io/registry/ega.study" - }, - { - "@id": "https://bioregistry.io/registry/ega.dataset" - }, - { - "@id": "https://bioregistry.io/registry/insdc.sra" - }, - { - "@id": "https://bioregistry.io/registry/idr" - }, - { - "@id": "https://bioregistry.io/registry/ssbd.project" - }, - { - "@id": "https://bioregistry.io/registry/emdb" - }, - { - "@id": "https://bioregistry.io/registry/genbank" - }, - { - "@id": "https://bioregistry.io/registry/pride" - }, - { - "@id": "https://bioregistry.io/registry/massive" - }, - { - "@id": "https://bioregistry.io/registry/biostudies" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Resources mentioned in \"Sharing biological data: why, when, and how\"" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oryzabase.gene", + "@id": "http://aber-owl.net/ontology/ICO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/scop", + "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/co_367", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Curator name: Clara S. Stanschewski; Curator Affiliation: King Abdullah University of Science and Technology; Contributing Scientists or Crop expert group: The Salt Lab and the Quinoa Phenotyping Consortium Creation Date: 23.05.2021", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Quinoa Ontology ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://cropontology.org/ontology/CO_367" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cropontology.org/term/CO_367:ROOT" - }, - "https://bioregistry.io/schema/#0000005": "0000004", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_367:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_367:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_367:0000004" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_367" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/cbioportal", + "@id": "https://bioregistry.io/registry/atc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", + "http://purl.org/dc/terms/description": "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/cBioPortal/cbioportal" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The cBioPortal for Cancer Genomics" + "@value": "Anatomical Therapeutic Chemical Classification System" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal" + "@id": "http://www.wikidata.org/entity/P267" }, { - "@id": "https://registry.identifiers.org/registry/cbioportal" + "@id": "https://bartoc.org/en/node/449" }, { - "@id": "https://fairsharing.org/FAIRsharing.6L6MjA" + "@id": "https://registry.identifiers.org/registry/atc" + }, + { + "@id": "http://aber-owl.net/ontology/ATC" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ATC" + }, + { + "@id": "http://edamontology.org/data_3103" + }, + { + "@id": "https://registry.bio2kg.org/resource/atc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ATC" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1a27h8" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "ontology" }, { - "@value": "proteomics" + "@value": "chemical" }, { - "@value": "preclinical studies" + "@value": "biomedical science" }, { - "@value": "genomics" + "@value": "chemical biology" + }, + { + "@value": "pharmacology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cbioportal.org" + "@id": "http://www.whocc.no/atc_ddd_index/" }, - "https://bioregistry.io/schema/#0000005": "laml_tcga_pub", - "https://bioregistry.io/schema/#0000006": "https://www.cbioportal.org/study/summary?id=$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\_]+$", + "https://bioregistry.io/schema/#0000005": "A10BA02", + "https://bioregistry.io/schema/#0000006": "http://www.whocc.no/atc_ddd_index/?code=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5739-1781" + "@id": "_:N1994ddc7e4024e5ea4c9252b93225408" }, - "https://bioregistry.io/schema/#0000024": "https://www.cbioportal.org/study/summary?id=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ATC_code" + }, + { + "@value": "ATTC" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.whocc.no/atc_ddd_index/?code=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cbioportal.org/study/summary?id=laml_tcga_pub" + "@id": "http://www.whocc.no/atc_ddd_index/?code=A10BA02" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cbioportal" + "@value": "atc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB", + "@id": "_:N1994ddc7e4024e5ea4c9252b93225408", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "WHO Collaborating Centre for Drug Statistics Methodology" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "whocc@fhi.no" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/tccd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/rnajunction", + "@id": "https://registry.bio2kg.org/resource/genefarm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/tair.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. ", + "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of RNA Junctions and Kissing loop Structures" + "@value": "TAIR Protein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.zzgvrv" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN" }, { - "@id": "https://registry.bio2kg.org/resource/rnajunction" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein" }, { - "@value": "structural biology" + "@id": "https://registry.bio2kg.org/resource/tair.protein" }, { - "@value": "rna" + "@id": "https://registry.identifiers.org/registry/tair.protein" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rnajunction.abcc.ncifcrf.gov" + "@id": "http://arabidopsis.org/index.jsp" }, - "https://bioregistry.io/schema/#0000005": "8668", - "https://bioregistry.io/schema/#0000006": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1", + "https://bioregistry.io/schema/#0000005": "1009107926", + "https://bioregistry.io/schema/#0000006": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=", + "https://bioregistry.io/schema/#0000024": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=8668" + "@id": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:1009107926" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rnajunction" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "tair.protein" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100010617", + "@id": "https://registry.identifiers.org/registry/spp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_1161", + "@id": "http://www.ontobee.org/ontology/OMIABIS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.bio2kg.org/resource/s_mart_db", + "@id": "https://bioportal.bioontology.org/ontologies/LBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.re3data.org/repository/r3d100012197", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/pspub", + "@id": "https://bioregistry.io/registry/co_358", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Documentation of the Phenoscape Curation Workflow", + "http://purl.org/dc/terms/description": "Cotton ontology from CottonGen database - June 2019", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Phenoscape Publication" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wiki.phenoscape.org/wiki/Curation_workflow" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "pspub" - } - }, - { - "@id": "https://bioregistry.io/registry/mirnao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An application ontology for use with miRNA databases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "microRNA Ontology" + "@value": "Cotton ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/mirnao" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO" - }, - { - "@id": "http://www.ontobee.org/ontology/miRNAO" - }, - { - "@id": "http://aber-owl.net/ontology/MIRNAO" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_358" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358" }, { - "@value": "ontology" + "@id": "https://cropontology.org/ontology/CO_358" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://code.google.com/p/mirna-ontology/" + "@id": "https://cropontology.org/ontology/CO_358/Cotton" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIRNAO_$1", + "https://bioregistry.io/schema/#0000005": "0000139", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_358:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mirnao.owl" + "@id": "https://cropontology.org/ontology/CO_358/Cotton/owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1635-4810" + "@id": "_:N696d9d4e08614292af9559f78985c799" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_358:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_358:0000139" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIRNAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "mirnao" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xf30yc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "co_358" } }, { - "@id": "http://www.ontobee.org/ontology/MOP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "_:N696d9d4e08614292af9559f78985c799", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/registry/hancestro", + "@id": "https://bioregistry.io/registry/pfam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Human ancestry ontology for the NHGRI GWAS Catalog", + "http://purl.org/dc/terms/description": "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/ancestro" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Ancestry Ontology" + "@value": "Pfam" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/hancestro" + "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM" }, { - "@id": "https://fairsharing.org/FAIRsharing.rja8qp" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO" + "@id": "http://www.wikidata.org/entity/P3519" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO" + "@id": "https://www.uniprot.org/database/DB-0073" }, { - "@id": "http://aber-owl.net/ontology/HANCESTRO" + "@id": "https://registry.identifiers.org/registry/pfam" }, { - "@id": "http://www.ontobee.org/ontology/HANCESTRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/pfam" + }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.y3scf6" }, { - "@value": "population genetics" + "@id": "https://www.re3data.org/repository/r3d100012850" }, { - "@value": "human genetics" + "@id": "http://edamontology.org/data_1138" }, { - "@value": "demographics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biology" }, { - "@value": "obo" + "@value": "domain" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ebispot.github.io/hancestro/" - }, - "https://bioregistry.io/schema/#0000005": "0290", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HANCESTRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hancestro.owl" + "@id": "https://www.ebi.ac.uk/interpro/" }, + "https://bioregistry.io/schema/#0000005": "PF11779", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/entry/pfam/$1", + "https://bioregistry.io/schema/#0000008": "^PF\\d{5}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1058-2668" + "@id": "https://orcid.org/0000-0002-6982-4660" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HANCESTRO_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "https://bioregistry.io/schema/#0000023": { + "@value": "PF" }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/entry/pfam/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HANCESTRO_0290" + "@id": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11779" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hancestro" - } - }, - { - "@id": "https://orcid.org/0000-0002-6497-2883", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Blake A Sweeney" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bsweeney@ebi.ac.uk" + "@value": "pfam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/dsm5", + "@id": "https://bioregistry.io/registry/icd9cm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]", + "http://purl.org/dc/terms/description": "ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" + "@value": "International Classification of Diseases, 9th Revision, Clinical Modification" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344" + "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM" }, { - "@id": "http://www.wikidata.org/entity/P1930" + "@id": "http://www.wikidata.org/entity/P1692" + }, + { + "@id": "http://aber-owl.net/ontology/ICD9CM" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.10zsxb" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "epidemiology" + }, + { + "@value": "medicine" + }, + { + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "preclinical studies" + }, + { + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://en.wikipedia.org/wiki/DSM-5" + "@id": "https://www.cdc.gov/nchs/icd/icd9cm.htm" }, - "https://bioregistry.io/schema/#0000005": "312.33", - "https://bioregistry.io/schema/#0000008": "^\\d{3}\\.\\d{2}$", + "https://bioregistry.io/schema/#0000005": "784", + "https://bioregistry.io/schema/#0000006": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1", + "https://bioregistry.io/schema/#0000008": "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "dsm-v" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nd11f509979d24a498e9719a49b64bac0" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dsm5" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FB-SP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/intact", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.ligand", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": [ + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "ICD9CM_2005" }, { - "@id": "https://bioregistry.io/registry/kegg" + "@value": "IC9CM" + }, + { + "@value": "ICDCM_2005" + }, + { + "@value": "ICD9CM" + }, + { + "@value": "ICD9CM_2006" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG LIGAND" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.ad.jp/kegg/docs/upd_ligand.html" + "https://bioregistry.io/schema/#0000024": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=784" }, - "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?cpd:$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?cpd:", "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.ligand" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "icd9cm" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "_:Nd11f509979d24a498e9719a49b64bac0", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Patricia Brooks" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pbrooks@hcfa.gov" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference", + "@id": "https://registry.bio2kg.org/resource/arachnoserver", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/rexo", + "@id": "https://bioregistry.io/registry/subtilist", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Regulation of Gene Expression", + "http://purl.org/dc/terms/description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Regulation of Gene Expression Ontology" + "@value": "Bacillus subtilis genome sequencing project" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/REXO" + "@id": "https://registry.identifiers.org/registry/subtilist" }, { - "@id": "https://fairsharing.org/FAIRsharing.recas1" + "@id": "https://fairsharing.org/FAIRsharing.40j2vd" }, { - "@id": "https://bioportal.bioontology.org/ontologies/REXO" + "@id": "https://registry.bio2kg.org/resource/subtilist" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "genome" }, { - "@value": "ontology" + "@value": "dna" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.semantic-systems-biology.org/apo" - }, - "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.bio.ntnu.no/ontology/ReXO/rexo.owl" + "@id": "http://genolist.pasteur.fr/SubtiList/" }, + "https://bioregistry.io/schema/#0000005": "BG11523", + "https://bioregistry.io/schema/#0000006": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1", + "https://bioregistry.io/schema/#0000008": "^BG\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1171-9876" + "https://bioregistry.io/schema/#0000024": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+BG11523" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rexo" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d7f0a9", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fs1z27", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rouge", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2084", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tair.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "subtilist" } }, { - "@id": "https://bioregistry.io/registry/iceberg.cime", + "@id": "https://bioregistry.io/registry/gramene.taxonomy", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/iceberg" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ICEberg cis-integrative and mobilizable element" + "@value": "Gramene Taxonomy" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biology" + "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_CIME.php?type=alpha&alpha=100" + "@id": "http://www.gramene.org/" }, - "https://bioregistry.io/schema/#0000005": "6", - "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME", + "https://bioregistry.io/schema/#0000005": "013681", + "https://bioregistry.io/schema/#0000006": "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/iceberg.cime:", + "https://bioregistry.io/schema/#0000024": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=6_CIME" + "@id": "https://archive.gramene.org/db/ontology/search?id=GR_tax:013681" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iceberg.cime" - } - }, - { - "@id": "https://registry.identifiers.org/registry/classyfire", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pmr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/one", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "gramene.taxonomy" } }, { - "@id": "https://bioregistry.io/registry/sedml.language", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0003-0007-6796", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SED-ML model format" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/sedml.language" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sed-ml.org/" - }, - "https://bioregistry.io/schema/#0000005": "sbml.level-3.version-2", - "https://bioregistry.io/schema/#0000006": "https://sed-ml.org/urns.html#language:$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\..*?)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://sed-ml.org/urns.html#language:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sed-ml.org/urns.html#language:sbml.level-3.version-2" + "@value": "David Craik" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sedml.language" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "d.craik@imb.uq.edu.au" } }, { - "@id": "https://registry.identifiers.org/registry/degradome", + "@id": "https://registry.bio2kg.org/resource/uo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.10gr18", + "@id": "https://registry.identifiers.org/registry/lrg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC", + "@id": "https://www.obofoundry.org/ontology/fbbi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.obofoundry.org/ontology/cro", + "@id": "https://registry.identifiers.org/registry/phylomedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene", + "@id": "https://fairsharing.org/FAIRsharing.rvz0m9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/RBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://orcid.org/0000-0002-8876-128X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jianmin Wu" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wujm@bjmu.edu.cn" } }, { - "@id": "https://registry.bio2kg.org/resource/pseudogene", + "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBCS", + "@id": "https://fairsharing.org/FAIRsharing.tawpg2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DARC", + "@id": "https://fairsharing.org/FAIRsharing.wvpgwn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/pcl", + "@id": "https://bioregistry.io/registry/ncbigene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties.", + "http://purl.org/dc/terms/description": "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/provisional_cell_ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Provisional Cell Ontology" + "@value": "Entrez Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/PCL" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PCL" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene" }, { - "@id": "https://fairsharing.org/FAIRsharing.bfcfd0" + "@id": "http://www.wikidata.org/entity/P351" }, { - "@id": "http://aber-owl.net/ontology/PCL" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene" }, { - "@id": "https://www.obofoundry.org/ontology/pcl" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "anatomy" + "@id": "https://fairsharing.org/FAIRsharing.5h3maw" }, { - "@value": "life science" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340" }, { - "@value": "cell biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene" }, { - "@value": "obo" + "@id": "https://www.re3data.org/repository/r3d100010650" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/provisional_cell_ontology" - }, - "https://bioregistry.io/schema/#0000005": "0011124", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PCL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pcl.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://registry.bio2kg.org/resource/ncbigene" + }, { - "@id": "https://bioregistry.io/registry/nbo" + "@id": "http://edamontology.org/data_1027" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://registry.identifiers.org/registry/ncbigene" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://www.uniprot.org/database/DB-0118" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/go" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/cl" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/pr" + "@value": "genetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/gene" + }, + "https://bioregistry.io/schema/#0000005": "100010", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/gene/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "entrez gene/locuslink" }, { - "@id": "https://bioregistry.io/registry/so" + "@value": "EGID" }, { - "@id": "https://bioregistry.io/registry/ro" + "@value": "NCBIGene" }, { - "@id": "https://bioregistry.io/registry/omo" + "@value": "NCBI_GeneID" }, { - "@id": "https://bioregistry.io/registry/pato" + "@value": "entrez" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@value": "EntrezGene" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7073-9172" + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/gene/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02meqm098" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PCL_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PCL_0011124" + "@id": "https://www.ncbi.nlm.nih.gov/gene/100010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pcl" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j7esqq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "ncbigene" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon", + "@id": "https://www.uniprot.org/database/DB-0155", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/rbk", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-4972-3782", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gerald Guala" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "itiswebmaster@itis.gov" } }, { - "@id": "https://bioregistry.io/registry/wormpep", + "@id": "https://bioregistry.io/registry/mmdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.", + "http://purl.org/dc/terms/description": "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wormpep" + "@value": "Molecular Modeling Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep" + "@id": "https://registry.identifiers.org/registry/mmdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB" }, { - "@id": "https://registry.identifiers.org/registry/wormpep" + "@id": "http://edamontology.org/data_2667" }, { - "@id": "https://registry.bio2kg.org/resource/wormpep" + "@id": "https://registry.bio2kg.org/resource/mmdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb" } ], "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "small molecule" + }, + { + "@value": "dna" + }, { "@value": "protein" }, + { + "@value": "interaction" + }, { "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wormbase.org/db/seq/protein" + "@id": "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure" }, - "https://bioregistry.io/schema/#0000005": "CE28239", - "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/db/seq/protein?name=$1", - "https://bioregistry.io/schema/#0000008": "^CE\\d{5}$", + "https://bioregistry.io/schema/#0000005": "50885", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/db/seq/protein?name=", + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wormbase.org/db/seq/protein?name=CE28239" + "@id": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=50885" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wormpep" + "@value": "mmdb" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/schema/#0000026", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "An organization" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has identifier space owner" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000025" } }, { - "@id": "http://www.ontobee.org/ontology/SDGIO", + "@id": "http://www.ontobee.org/ontology/ARO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/insdc.gca", + "@id": "https://orcid.org/0000-0002-6450-7041", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dan Brickley" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "danbri@w3.org" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rapdb.locus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.re3data.org/repository/r3d100011316", + "@id": "https://registry.bio2kg.org/resource/kisao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/begdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MINID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/agsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods.", + "http://purl.org/dc/terms/description": "The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Benchmark Energy & Geometry Database" + "@value": "Ambystoma Genetic Stock Center" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/begdb" + "@value": "larvae" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB" + "@value": "salamander" }, { - "@id": "https://fairsharing.org/FAIRsharing.nbe4fq" + "@value": "ambystoma" }, { - "@id": "https://www.re3data.org/repository/r3d100011166" + "@value": "adult" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb" + "@value": "embryo" + }, + { + "@value": "k-12 teacher" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.begdb.com" + "@id": "https://ambystoma.uky.edu/genetic-stock-center/" }, - "https://bioregistry.io/schema/#0000005": "4214", - "https://bioregistry.io/schema/#0000006": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=", + "https://bioregistry.io/schema/#0000005": "100E", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:AGSC_$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:AGSC_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=4214" + "@id": "https://scicrunch.org/resolver/RRID:AGSC_100E" }, "https://bioregistry.io/schema/#0000029": { - "@value": "begdb" + "@value": "agsc" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/ensembl.fungi", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/lbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/ensembl" - } - ], + "http://purl.org/dc/terms/description": "A vocabulary for cattle, chicken, horse, pig, and sheep breeds.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/AnimalGenome/livestock-breed-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." + "@value": "Livestock Breed Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bg5xqs" - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl.fungi" + "@id": "https://bioportal.bioontology.org/ontologies/LBO" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.fungi" + "@id": "http://agroportal.lirmm.fr/ontologies/LBO" }, { - "@id": "https://www.uniprot.org/database/DB-0148" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi" + "@id": "http://aber-owl.net/ontology/LBO" }, { - "@id": "https://www.re3data.org/repository/r3d100011196" + "@id": "https://fairsharing.org/FAIRsharing.309v57" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" - }, - { - "@value": "comparative genomics" + "@value": "animal breeding" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fungi.ensembl.org/" - }, - "https://bioregistry.io/schema/#0000005": "CADAFLAT00006211", - "https://bioregistry.io/schema/#0000006": "https://fungi.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z-a-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://fungi.ensembl.org/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://fungi.ensembl.org/id/CADAFLAT00006211" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl.fungi" - } - }, - { - "@id": "https://bioregistry.io/registry/modeldb.concept", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ModelDB concept" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/modeldb.concept" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.yale.edu" - }, - "https://bioregistry.io/schema/#0000005": "3639", - "https://bioregistry.io/schema/#0000006": "https://senselab.med.yale.edu/ModelDB/ModelList?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://senselab.med.yale.edu/ModelDB/ModelList?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://senselab.med.yale.edu/ModelDB/ModelList?id=3639" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "modeldb.concept" - } - }, - { - "@id": "https://bioregistry.io/registry/cameo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Continuous Automated Model Evaluation" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo" + "@value": "animal husbandry" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.dq34p2" + "@value": "genomics" }, { - "@id": "https://registry.identifiers.org/registry/cameo" + "@value": "genetics" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cameo3d.org" + "@id": "http://bioportal.bioontology.org/ontologies/LBO" + }, + "https://bioregistry.io/schema/#0000005": "0000487", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LBO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl" }, - "https://bioregistry.io/schema/#0000005": "2019-08-03_00000089_1", - "https://bioregistry.io/schema/#0000006": "https://www.cameo3d.org/sp/targets/target/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9\\-_]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2715-335X" + "@id": "https://orcid.org/0000-0002-2346-5201" }, - "https://bioregistry.io/schema/#0000024": "https://www.cameo3d.org/sp/targets/target/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LBO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cameo3d.org/sp/targets/target/2019-08-03_00000089_1" + "@id": "http://purl.obolibrary.org/obo/LBO_0000487" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cameo" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/apollo_sv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011478", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "lbo" } }, { - "@id": "https://fairsharing.org/FAIRsharing.atygwy", + "@id": "https://registry.identifiers.org/registry/lincs.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P652", + "@id": "http://aber-owl.net/ontology/MIRNAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/antibodyregistry", + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5hc8vt", + "@id": "https://fairsharing.org/FAIRsharing.mr293q", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0001-9189-9661", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Yongqun Oliver He" - }, - { - "@value": "Yongqunh He" - } - ], + "@id": "https://orcid.org/0000-0002-8951-466X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Christine Pourcel" + }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "yongqunh@med.umich.edu" + "@value": "Christine.Pourcel@u-psud.fr" } }, { - "@id": "https://registry.identifiers.org/registry/gramene.protein", + "@id": "https://fairsharing.org/FAIRsharing.nzaz6z", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.uniprot.org/database/DB-0152", + "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene", + "@id": "https://registry.identifiers.org/registry/hinv.transcript", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido", + "@id": "http://aber-owl.net/ontology/CRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.wikidata.org/entity/P234", + "@id": "https://www.re3data.org/repository/r3d100010375", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://edamontology.org/data_2608", + "@id": "https://fairsharing.org/FAIRsharing.d88s6e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ddinter.interaction", + "@id": "https://bioregistry.io/registry/aftol.taxonomy", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.", + "http://purl.org/dc/terms/description": "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Curated Drug-Drug Interactions Database - Interaction" + "@value": "Assembling the Fungal Tree of Life - Taxonomy" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "drug-drug interactions" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/aftol.taxonomy" }, { - "@value": "relationships" + "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY" }, { - "@value": "drugs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ddinter.scbdd.com" + "@id": "https://aftol.umn.edu" }, - "https://bioregistry.io/schema/#0000005": "1122888", - "https://bioregistry.io/schema/#0000006": "http://ddinter.scbdd.com/ddinter/interact/$1", + "https://bioregistry.io/schema/#0000005": "959", + "https://bioregistry.io/schema/#0000006": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3604-3785" - }, - "https://bioregistry.io/schema/#0000024": "http://ddinter.scbdd.com/ddinter/interact/", + "https://bioregistry.io/schema/#0000024": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ddinter.scbdd.com/ddinter/interact/1122888" + "@id": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=959" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ddinter.interaction" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/CHMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/flybase.est", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "aftol.taxonomy" } }, { - "@id": "https://orcid.org/0000-0002-6704-7538", + "@id": "https://bioregistry.io/registry/dictybase.est", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/dictybase" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zhiliang Hu" + "@value": "dictyBase Expressed Sequence Tag" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "zhu@iastate.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est" + }, + { + "@id": "https://registry.identifiers.org/registry/dictybase.est" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://dictybase.org/" + }, + "https://bioregistry.io/schema/#0000005": "DDB0016567", + "https://bioregistry.io/schema/#0000006": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1", + "https://bioregistry.io/schema/#0000008": "^DDB\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=DDB0016567" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dictybase.est" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_336", + "@id": "https://bioregistry.io/registry/snp500cancer", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SNP500Cancer" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/snp500cancer" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "dna" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://snp500cancer.nci.nih.gov" + }, + "https://bioregistry.io/schema/#0000005": "TP53-47", + "https://bioregistry.io/schema/#0000006": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=TP53-47" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "snp500cancer" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY", + "@id": "https://fairsharing.org/FAIRsharing.aSszvY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.identifiers.org/registry/bigg.model", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.identifiers.org/registry/trichdb", + "@id": "https://registry.identifiers.org/registry/mmp.cat", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P11199", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jrv6wj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oryzabase.reference", + "@id": "https://registry.identifiers.org/registry/fplx", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/dashr", + "@id": "https://bioregistry.io/registry/nlx.dys", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of small human noncoding RNAs" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/description": "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.ztvs34" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuroLex Dysfunction" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "disease" }, { - "@id": "https://registry.identifiers.org/registry/dashr" + "@value": "phenotypes" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr" + "@value": "disorders" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lisanwanglab.org/DASHR/" + "@id": "https://scicrunch.org/scicrunch/interlex/dashboard" }, - "https://bioregistry.io/schema/#0000005": "hsa-mir-200a", - "https://bioregistry.io/schema/#0000006": "http://lisanwanglab.org/DASHR/entry/$1", - "https://bioregistry.io/schema/#0000008": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", + "https://bioregistry.io/schema/#0000005": "20090303", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mondo" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3684-0031" + "@id": "https://orcid.org/0000-0002-7509-4801" }, - "https://bioregistry.io/schema/#0000024": "http://lisanwanglab.org/DASHR/entry/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://lisanwanglab.org/DASHR/entry/hsa-mir-200a" + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_20090303" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dashr" + "@value": "nlx.dys" } }, { - "@id": "https://www.re3data.org/repository/r3d100011046", + "@id": "https://bioregistry.io/metaregistry/biocontext/OHD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010222", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/bbtp", + "@id": "https://bioregistry.io/registry/mgnify.analysis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Input data and analysis results for the paper \"Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 ).", + "http://purl.org/dc/terms/description": "Analyses of microbiome data within MGnify", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Blue Brain Project Topological sampling Knowledge Graph" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/bbtp" + "@value": "MGnify Analysis" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://portal.bluebrain.epfl.ch" + "@id": "https://www.ebi.ac.uk/metagenomics/" }, - "https://bioregistry.io/schema/#0000005": "f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a", - "https://bioregistry.io/schema/#0000006": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1", - "https://bioregistry.io/schema/#0000008": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", + "https://bioregistry.io/schema/#0000005": "MGYA00002270", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/analyses/$1", + "https://bioregistry.io/schema/#0000008": "^MGYA\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/analyses/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a" + "@id": "https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bbtp" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/insdc.sra", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000406", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@value": "mgnify.analysis" } }, { - "@id": "https://bioregistry.io/registry/worms", + "@id": "https://bioregistry.io/registry/cbioportal", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.", + "http://purl.org/dc/terms/description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/cBioPortal/cbioportal" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WoRMS-ID for taxa" + "@value": "The cBioPortal for Cancer Genomics" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/worms" - }, - { - "@id": "https://bartoc.org/en/node/720" - }, - { - "@id": "http://www.wikidata.org/entity/P850" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS" + "@id": "https://registry.identifiers.org/registry/cbioportal" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal" }, { - "@id": "https://fairsharing.org/FAIRsharing.7g1bzj" + "@id": "https://fairsharing.org/FAIRsharing.6L6MjA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "taxonomy" + "@value": "genomics" }, { - "@value": "biodiversity" + "@value": "biomedical science" }, { - "@value": "environmental science" + "@value": "proteomics" + }, + { + "@value": "preclinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.marinespecies.org/" + "@id": "http://www.cbioportal.org" }, - "https://bioregistry.io/schema/#0000005": "146421", - "https://bioregistry.io/schema/#0000006": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "laml_tcga_pub", + "https://bioregistry.io/schema/#0000006": "https://www.cbioportal.org/study/summary?id=$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\_]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8160-7941" + "@id": "https://orcid.org/0000-0002-5739-1781" }, - "https://bioregistry.io/schema/#0000024": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=", + "https://bioregistry.io/schema/#0000024": "https://www.cbioportal.org/study/summary?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=146421" + "@id": "https://www.cbioportal.org/study/summary?id=laml_tcga_pub" }, "https://bioregistry.io/schema/#0000029": { - "@value": "worms" + "@value": "cbioportal" } }, { - "@id": "https://bioregistry.io/registry/swrl", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/glycosciencesdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SWRL enables Horn-like rules to be combined with an OWL knowledge base.", + "http://purl.org/dc/terms/description": "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "A Semantic Web Rule Language Combining OWL and RuleML" + "@value": "Glycosciences.DB" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/2003/11/swrl#" + "@id": "http://www.glycosciences.de/database/" }, - "https://bioregistry.io/schema/#0000005": "Variable", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/11/swrl#$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/11/swrl#", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7140-9933" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "glycosciences.db" + }, + "https://bioregistry.io/schema/#0000024": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2003/11/swrl#Variable" + "@id": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "swrl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.h3y42f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ons", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vegbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "glycosciencesdb" } }, { - "@id": "https://bioregistry.io/registry/rfam", + "@id": "https://bioregistry.io/registry/nddf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.", + "http://purl.org/dc/terms/description": "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rfam database of RNA families" + "@value": "National Drug Data File" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208" }, { - "@id": "https://registry.identifiers.org/registry/rfam" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM" + "@id": "http://aber-owl.net/ontology/NDDF" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM" + "@id": "https://fairsharing.org/FAIRsharing.8qcbs0" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam" + "@id": "https://bioportal.bioontology.org/ontologies/NDDF" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.fex4c8" + "@value": "medicinal chemistry" }, { - "@id": "http://edamontology.org/data_2356" + "@value": "ontology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genetics" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rfam.xfam.org/" + "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF" }, - "https://bioregistry.io/schema/#0000005": "RF00230", - "https://bioregistry.io/schema/#0000006": "https://rfam.xfam.org/family/$1", - "https://bioregistry.io/schema/#0000008": "^RF\\d{5}$", + "https://bioregistry.io/schema/#0000005": "002678", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/NDDF/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://rfam.xfam.org/family/", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N9e9771e602eb4413b1a7aa32485aa5b5" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/NDDF/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://rfam.xfam.org/family/RF00230" + "@id": "http://purl.bioontology.org/ontology/NDDF/002678" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rfam" + "@value": "nddf" } }, { - "@id": "http://www.ontobee.org/ontology/OMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "_:N9e9771e602eb4413b1a7aa32485aa5b5", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "First DataBank Customer Support" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cs@firstdatabank.com" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO", + "@id": "https://bioportal.bioontology.org/ontologies/OA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.ontobee.org/ontology/BCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SO", + "@id": "https://www.obofoundry.org/ontology/clo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-7532-1269", + "@id": "https://orcid.org/0000-0003-2855-4120", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nicholas Furnham" + "@value": "Steven G. E. Marsh" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nickf@ebi.ac.uk" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "http://edamontology.org/data_2314", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.aI1J5W", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "steven.marsh@ucl.ac.uk" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR", + "@id": "https://cropontology.org/ontology/CO_359", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/snornabase", + "@id": "https://bioregistry.io/registry/dso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs.", + "http://purl.org/dc/terms/description": "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "snoRNABase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/snornalbmedb" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/IBM/datascienceontology" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "rna" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Data Science Ontology" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "data science" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www-snorna.biotoul.fr/" + "@id": "https://www.datascienceontology.org/" }, - "https://bioregistry.io/schema/#0000005": "SR0000178", - "https://bioregistry.io/schema/#0000006": "http://www-snorna.biotoul.fr/plus.php?id=$1", + "https://bioregistry.io/schema/#0000005": "classification-model", + "https://bioregistry.io/schema/#0000006": "https://www.datascienceontology.org/concept/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www-snorna.biotoul.fr/plus.php?id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8600-949X" + }, + "https://bioregistry.io/schema/#0000024": "https://www.datascienceontology.org/concept/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www-snorna.biotoul.fr/plus.php?id=SR0000178" + "@id": "https://www.datascienceontology.org/concept/classification-model" }, "https://bioregistry.io/schema/#0000029": { - "@value": "snornabase" - } - }, - { - "@id": "http://edamontology.org/data_2622", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://aber-owl.net/ontology/MO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://www.ontobee.org/ontology/XCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mye76w", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "dso" } }, { - "@id": "https://registry.bio2kg.org/resource/modeldb", + "@id": "https://www.obofoundry.org/ontology/zfs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/corum", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/envo", + "@id": "https://registry.identifiers.org/registry/atcvet", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mmdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/EPSO", + "@id": "http://aber-owl.net/ontology/PAV", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.ontobee.org/ontology/INO", + "@id": "https://bioregistry.io/metaregistry/biocontext/EV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mfmo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/RDruzinsky/feedontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mammalian Feeding Muscle Ontology" + "@id": "https://bioregistry.io/metaregistry/fairsharing", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo" + "@id": "https://fairsharing.org/FAIRsharing.mct09a" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO" + "@id": "https://fairsharing.org/FAIRsharing.kbz5jh" }, { - "@id": "https://www.obofoundry.org/ontology/mfmo" + "@id": "https://fairsharing.org/FAIRsharing.3t5qc3" }, { - "@id": "http://aber-owl.net/ontology/MFMO" + "@id": "https://fairsharing.org/FAIRsharing.b2979t" }, { - "@id": "https://fairsharing.org/FAIRsharing.669cnk" + "@id": "https://fairsharing.org/FAIRsharing.6k0kwd" }, { - "@id": "http://www.ontobee.org/ontology/MFMO" + "@id": "https://fairsharing.org/FAIRsharing.7hxxc4" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFMO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.6s749p" + }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.kpbna7" }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.rb2drw" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/rdruzinsky/feedontology" - }, - "https://bioregistry.io/schema/#0000005": "0000208", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mfmo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/uberon" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1572-1316" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFMO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MFMO_0000208" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mfmo" - } - }, - { - "@id": "https://bioregistry.io/registry/omiabis", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OMIABIS/omiabis-dev" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontologized MIABIS" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.y1zyaq" + }, { - "@id": "https://www.obofoundry.org/ontology/omiabis" + "@id": "https://fairsharing.org/FAIRsharing.3etvdn" }, { - "@id": "http://www.ontobee.org/ontology/OMIABIS" + "@id": "https://fairsharing.org/FAIRsharing.97805c" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS" + "@id": "https://fairsharing.org/FAIRsharing.edxb58" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS" + "@id": "https://fairsharing.org/FAIRsharing.s9ztmd" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis" + "@id": "https://fairsharing.org/FAIRsharing.qv4b3c" }, { - "@id": "http://aber-owl.net/ontology/OMIABIS" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.ckd4rf" + }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.fb99fa" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OMIABIS/omiabis-dev" - }, - "https://bioregistry.io/schema/#0000005": "0001079", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMIABIS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/omiabis.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/labo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1834-3856" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMIABIS_", - "https://bioregistry.io/schema/#0000029": { - "@value": "omiabis" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/ncbigi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GenInfo Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.wwy1ns" + }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi" + "@id": "https://fairsharing.org/FAIRsharing.46s4nt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI" + "@id": "https://fairsharing.org/FAIRsharing.dx30m8" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI" + "@id": "https://fairsharing.org/FAIRsharing.dzxae" }, { - "@id": "http://edamontology.org/data_2314" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/genbank/sequenceids/" - }, - "https://bioregistry.io/schema/#0000005": "568815597", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/genbank" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://fairsharing.org/FAIRsharing.nbe4fq" + }, { - "@value": "ncbi.gi" + "@id": "https://fairsharing.org/FAIRsharing.s5zmbp" }, { - "@value": "NCBI_gi" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02meqm098" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=568815597" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ncbigi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/polbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/wormbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0140", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/wos", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Web of Science ID (work)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P8372" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.webofscience.com" - }, - "https://bioregistry.io/schema/#0000005": "000177759000002", - "https://bioregistry.io/schema/#0000006": "https://www.webofscience.com/wos/woscc/full-record/WOS:$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7" + }, { - "@value": "wosuid" + "@id": "https://fairsharing.org/FAIRsharing.gkw1w8" }, { - "@value": "wosid" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.webofscience.com/wos/woscc/full-record/WOS:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.webofscience.com/wos/woscc/full-record/WOS:000177759000002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wos" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_324", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/hogenom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/biosystems", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/owlstar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/linkml/owlstar" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontological Interpretations for Web Property Graphs" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://linkml.io/owlstar/" - }, - "https://bioregistry.io/schema/#0000005": "AllSomeInterpretation", - "https://bioregistry.io/schema/#0000006": "http://w3id.org/owlstar/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "http://w3id.org/owlstar/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://w3id.org/owlstar/AllSomeInterpretation" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "owlstar" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gwascentral.study", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vs7865", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ehdaa2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://aber-owl.net/ontology/MOSAIC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://edamontology.org/data_1011", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://aber-owl.net/ontology/RGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/niaest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/molmovdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/rapdb.transcript", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3870", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ga4ghdos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mirex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P6049", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/addgene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.qvxhb1", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0042", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ecocore", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/fr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that enables the description of reviews of scientific articles and other scholarly resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/fr" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIR* Reviews Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.e7e609" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/fr" - }, - "https://bioregistry.io/schema/#0000005": "ReviewVersion", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fr" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tgma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pass2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/vega", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mtjvme", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t3nprm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/ico", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ICO-ontology/ICO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Informed Consent Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.7fc5y6" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico" + "@id": "https://fairsharing.org/FAIRsharing.zx2ztd" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICO" + "@id": "https://fairsharing.org/FAIRsharing.rycy2x" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICO" + "@id": "https://fairsharing.org/FAIRsharing.dj8nt8" }, { - "@id": "https://fairsharing.org/FAIRsharing.b9znd5" + "@id": "https://fairsharing.org/FAIRsharing.t3nprm" }, { - "@id": "http://www.ontobee.org/ontology/ICO" + "@id": "https://fairsharing.org/FAIRsharing.w7bw2y" }, { - "@id": "http://aber-owl.net/ontology/ICO" + "@id": "https://fairsharing.org/FAIRsharing.7vjq5t" }, { - "@id": "https://www.obofoundry.org/ontology/ico" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.dyj433" + }, { - "@value": "biomedical science" + "@id": "https://fairsharing.org/FAIRsharing.wrvze3" }, { - "@value": "health science" + "@id": "https://fairsharing.org/FAIRsharing.a5sv8m" }, { - "@value": "clinical studies" + "@id": "https://fairsharing.org/FAIRsharing.c55d5e" }, { - "@value": "medicine" + "@id": "https://fairsharing.org/FAIRsharing.rvz0m9" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.anpa6" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ICO-ontology/ICO" - }, - "https://bioregistry.io/schema/#0000005": "0000066", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ICO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ico.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ICO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ICO_0000066" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ico" - } - }, - { - "@id": "https://orcid.org/0000-0002-4131-735X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John Garavelli" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "john.garavelli@ebi.ac.uk" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.eqgjeq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pwEima", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_322", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ncats.bioplanet", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Center for Advancing Translation Sciences BioPlanet" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://tripod.nih.gov/bioplanet/" - }, - "https://bioregistry.io/schema/#0000005": "3", - "https://bioregistry.io/schema/#0000006": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8886-8311" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ncats.bioplanet" - } - }, - { - "@id": "https://registry.identifiers.org/registry/glycomedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/symp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DiseaseOntology/SymptomOntology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Symptom Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.veg2d6" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/SYMP" + "@id": "https://fairsharing.org/FAIRsharing.4shj9c" }, { - "@id": "https://fairsharing.org/FAIRsharing.ay74mj" + "@id": "https://fairsharing.org/FAIRsharing.v06c4q" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP" + "@id": "https://fairsharing.org/FAIRsharing.y3scf6" }, { - "@id": "http://www.ontobee.org/ontology/SYMP" + "@id": "https://fairsharing.org/FAIRsharing.zwtww5" }, { - "@id": "https://registry.bio2kg.org/resource/symptom" + "@id": "https://fairsharing.org/FAIRsharing.newa3z" }, { - "@id": "https://www.obofoundry.org/ontology/symp" + "@id": "https://fairsharing.org/FAIRsharing.88v2k0" }, { - "@id": "http://aber-owl.net/ontology/SYMP" + "@id": "https://fairsharing.org/FAIRsharing.anpj91" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp" + "@id": "https://fairsharing.org/FAIRsharing.bc8ayj" }, { - "@id": "http://www.wikidata.org/entity/P8656" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.3wbgm0" + }, { - "@value": "pain medicine" + "@id": "https://fairsharing.org/FAIRsharing.af7a2d" }, { - "@value": "biomedical science" + "@id": "https://fairsharing.org/FAIRsharing.rs2815" }, { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.bv0zjz" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.ctwd7b" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page" - }, - "https://bioregistry.io/schema/#0000005": "0019171", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SYMP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/symp.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8910-9851" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "SYMP" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SYMP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SYMP_0019171" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "symp" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wqsxtg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SISU", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/uminctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An additional Japanese clinical trial registry", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "University hospital Medical Information Network Clinical Trial Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.umin.ac.jp/ctr/index.htm" - }, - "https://bioregistry.io/schema/#0000005": "UMIN000049383", - "https://bioregistry.io/schema/#0000008": "^UMIN\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "uminctr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6ccbe6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/INO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.CugtbQ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/aero", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Adverse Event Reporting Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6" + }, { - "@id": "https://www.obofoundry.org/ontology/aero" + "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero" + "@id": "https://fairsharing.org/FAIRsharing.dt9z89" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AERO" + "@id": "https://fairsharing.org/FAIRsharing.65dmtr" }, { - "@id": "https://fairsharing.org/FAIRsharing.rycy2x" + "@id": "https://fairsharing.org/FAIRsharing.ybxnhg" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AERO" + "@id": "https://fairsharing.org/FAIRsharing.m3jtpg" }, { - "@id": "http://aber-owl.net/ontology/AERO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.kay31r" + }, { - "@value": "preclinical studies" + "@id": "https://fairsharing.org/FAIRsharing.9091d9" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.9rhr9j" }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.9b7wvk" }, { - "@value": "biomedical science" + "@id": "https://fairsharing.org/FAIRsharing.fex4c8" }, { - "@value": "health science" + "@id": "https://fairsharing.org/FAIRsharing.f2c119" }, { - "@value": "medicine" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/aero" - }, - "https://bioregistry.io/schema/#0000005": "0000125", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AERO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/aero.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9551-6370" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AERO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "aero" - } - }, - { - "@id": "http://aber-owl.net/ontology/ONTONEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/time", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/w3c/sdw/" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Time Ontology in OWL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.2abjs5" + }, { - "@id": "http://aber-owl.net/ontology/TIME" + "@id": "https://fairsharing.org/FAIRsharing.jrv6wj" }, { - "@id": "https://fairsharing.org/FAIRsharing.hw3bh2" + "@id": "https://fairsharing.org/FAIRsharing.8qzmtr" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TIME" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.b5cc91" + }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.175hsz" }, { - "@value": "subject agnostic" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/owl-time/" - }, - "https://bioregistry.io/schema/#0000005": "DateTimeDescription", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2006/time#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/TIME/2/time.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3884-3420" - }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2006/time#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2006/time#DateTimeDescription" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "time" - } - }, - { - "@id": "https://orcid.org/0000-0003-4308-6337", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ana Rath" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ordo.orphanet@inserm.fr" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/aao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0001-9016-2684", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "James C. Hu" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jimhu@tamu.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2qx8n8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ensembl.metazoa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hdr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/norine", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/geo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/mop", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rsc-ontologies/rxno" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular Process Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.945c78" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOP" + "@id": "https://fairsharing.org/FAIRsharing.t31wcb" }, { - "@id": "https://fairsharing.org/FAIRsharing.mct09a" + "@id": "https://fairsharing.org/FAIRsharing.7zxrs6" }, { - "@id": "http://aber-owl.net/ontology/MOP" + "@id": "https://fairsharing.org/FAIRsharing.3kcgmr" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop" + "@id": "https://fairsharing.org/FAIRsharing.1jKfji" }, { - "@id": "http://www.ontobee.org/ontology/MOP" + "@id": "https://fairsharing.org/FAIRsharing.b4sa0w" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MOP" + "@id": "https://fairsharing.org/FAIRsharing.wqsxtg" }, { - "@id": "https://www.obofoundry.org/ontology/mop" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.w2eeqr" + }, { - "@value": "molecular chemistry" + "@id": "https://fairsharing.org/FAIRsharing.3nx7t" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.c7w81a" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/rsc-ontologies/rxno" - }, - "https://bioregistry.io/schema/#0000005": "0000079", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MOP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mop.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5985-7429" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MOP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MOP_0000079" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mop" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/uniprot.isoform", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cubedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/gmd.gcms", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Golm Metabolome Database GC-MS spectra" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.hpvbxb" + }, { - "@id": "https://registry.identifiers.org/registry/gmd.gcms" + "@id": "https://fairsharing.org/FAIRsharing.qr6pqk" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS" + "@id": "https://fairsharing.org/FAIRsharing.nzaz6z" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gmd.mpimp-golm.mpg.de/" - }, - "https://bioregistry.io/schema/#0000005": "53d583d8-40c6-40e1-9296-23f821cd77a5", - "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Spectrums/$1", - "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/Spectrums/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://gmd.mpimp-golm.mpg.de/Spectrums/53d583d8-40c6-40e1-9296-23f821cd77a5" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gmd.gcms" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/STY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/sabiork.ec", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/minid.test", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/runbiosimulations", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/pr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010549", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/registry/civic.tid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://fairsharing.org/FAIRsharing.dyqz3y" + }, { - "@id": "https://bioregistry.io/registry/civic" + "@id": "https://fairsharing.org/FAIRsharing.r41qhx" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Therapy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.tid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "14", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/drugs/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/drugs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/drugs/14" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.tid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PAV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bf8dsb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/WBPHENOTYPE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/DISDRIV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/bdsc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bloomington Drosophila Stock Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.dq78pn" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc" + "@id": "https://fairsharing.org/FAIRsharing.vgw1m6" }, { - "@id": "https://registry.identifiers.org/registry/bdsc" + "@id": "https://fairsharing.org/FAIRsharing.8zqzm9" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.651n9j" + }, { - "@value": "transposon" + "@id": "https://fairsharing.org/FAIRsharing.zmx7nn" }, { - "@value": "genetic analysis" + "@id": "https://fairsharing.org/FAIRsharing.pwEima" }, { - "@value": "protein trap" + "@id": "https://fairsharing.org/FAIRsharing.ge8y23" }, { - "@value": "disease model" + "@id": "https://fairsharing.org/FAIRsharing.e08886" }, { - "@value": "human disease model" + "@id": "https://fairsharing.org/FAIRsharing.j1wj7d" }, { - "@value": "invertebrate" + "@id": "https://fairsharing.org/FAIRsharing.zcn4w4" }, { - "@value": "insertion" + "@id": "https://fairsharing.org/FAIRsharing.c86z66" }, { - "@value": "sequenced strain" + "@id": "https://fairsharing.org/FAIRsharing.9d5f5r" }, { - "@value": "fly" + "@id": "https://fairsharing.org/FAIRsharing.wkaakq" }, { - "@value": "scientist" + "@id": "https://fairsharing.org/FAIRsharing.kbtt7f" }, { - "@value": "mutation" + "@id": "https://fairsharing.org/FAIRsharing.78d3ad" }, { - "@value": "genetic construct" + "@id": "https://fairsharing.org/FAIRsharing.3e88d6" }, { - "@value": "deficiency" + "@id": "https://fairsharing.org/FAIRsharing.162003" }, { - "@value": "germline" + "@id": "https://fairsharing.org/FAIRsharing.haxp7g" }, { - "@value": "faseb list" + "@id": "https://fairsharing.org/FAIRsharing.65xkbs" }, { - "@value": "stock" + "@id": "https://fairsharing.org/FAIRsharing.xf30yc" }, { - "@value": "database" + "@id": "https://fairsharing.org/FAIRsharing.sye5js" }, { - "@value": "somatic" + "@id": "https://fairsharing.org/FAIRsharing.a8z6gz" }, { - "@value": "gene" + "@id": "https://fairsharing.org/FAIRsharing.jr30xc" }, { - "@value": "duplication" + "@id": "https://fairsharing.org/FAIRsharing.2qx8n8" }, { - "@value": "transposon insertion" + "@id": "https://fairsharing.org/FAIRsharing.0pUMYW" }, { - "@value": "genetic" + "@id": "https://fairsharing.org/FAIRsharing.mtjvme" }, { - "@value": "deletion" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bdsc.indiana.edu/about/mission.html" - }, - "https://bioregistry.io/schema/#0000005": "33607", - "https://bioregistry.io/schema/#0000006": "https://bdsc.indiana.edu/stocks/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bdsc.indiana.edu/stocks/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bdsc.indiana.edu/stocks/33607" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bdsc" - } - }, - { - "@id": "https://bioregistry.io/registry/opl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OPL-ontology/OPL" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Parasite LifeCycle" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.j75srj" + }, { - "@id": "https://fairsharing.org/FAIRsharing.ez2nhb" + "@id": "https://fairsharing.org/FAIRsharing.wy4egf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl" + "@id": "https://fairsharing.org/FAIRsharing.mphj4z" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPL" + "@id": "https://fairsharing.org/FAIRsharing.9c1p18" }, { - "@id": "http://www.ontobee.org/ontology/OPL" + "@id": "https://fairsharing.org/FAIRsharing.wp0134" }, { - "@id": "http://aber-owl.net/ontology/OPL" + "@id": "https://fairsharing.org/FAIRsharing.USxx0K" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPL" + "@id": "https://fairsharing.org/FAIRsharing.8337e2" }, { - "@id": "https://www.obofoundry.org/ontology/opl" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.dp0jvd" + }, { - "@value": "developmental biology" + "@id": "https://fairsharing.org/FAIRsharing.eyjkws" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.zchb68" }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.5949vn" }, { - "@value": "anatomy" + "@id": "https://fairsharing.org/FAIRsharing.rfec93" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OPL-ontology/OPL" - }, - "https://bioregistry.io/schema/#0000005": "0000319", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OPL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/opl.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OPL_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OPL_0000319" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "opl" - } - }, - { - "@id": "http://aber-owl.net/ontology/EOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/obo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OBOFoundry/OBOFoundry.github.io" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Biological and Biomedical Ontologies" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.nwgynk" + }, { - "@id": "https://fairsharing.org/FAIRsharing.847069" + "@id": "https://fairsharing.org/FAIRsharing.tawpg2" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBO" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology and terminology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.obofoundry.org/" - }, - "https://bioregistry.io/schema/#0000005": "uberon", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7356-1779" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/uberon" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "obo" - } - }, - { - "@id": "https://bioregistry.io/registry/repec", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Peruvian Clinical Trial Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ensayosclinicos-repec.ins.gob.pe/en/" - }, - "https://bioregistry.io/schema/#0000005": "046-19", - "https://bioregistry.io/schema/#0000006": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=046-19" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "repec" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ohmi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fix", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/ceph", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An anatomical and developmental ontology for cephalopods", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/cephalopod-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cephalopod Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.WxI96O" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/CEPH" + "@id": "https://fairsharing.org/FAIRsharing.d05nwx" }, { - "@id": "https://fairsharing.org/FAIRsharing.p58bm4" + "@id": "https://fairsharing.org/FAIRsharing.cb7086" }, { - "@id": "https://www.obofoundry.org/ontology/ceph" + "@id": "https://fairsharing.org/FAIRsharing.1tbrdz" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH" + "@id": "https://fairsharing.org/FAIRsharing.8d6247" }, { - "@id": "http://www.ontobee.org/ontology/CEPH" + "@id": "https://fairsharing.org/FAIRsharing.5f5mfm" }, { - "@id": "http://aber-owl.net/ontology/CEPH" + "@id": "https://fairsharing.org/FAIRsharing.f1449d" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.y2qws7" + }, { - "@value": "anatomy" + "@id": "https://fairsharing.org/FAIRsharing.nbfwwv" }, { - "@value": "zoology" + "@id": "https://fairsharing.org/FAIRsharing.ehe3yp" }, { - "@value": "fisheries science" + "@id": "https://fairsharing.org/FAIRsharing.b084yh" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.wcpd6f" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/cephalopod-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000109", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CEPH_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ceph.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CEPH_", - "https://bioregistry.io/schema/#0000029": { - "@value": "ceph" - } - }, - { - "@id": "https://bioregistry.io/registry/chemrof", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CHEMROF is an ontological framework for Chemical Entities Mixtures Reactions Ontological Framework. This OWL ontology is an automated Translation of the source LinkML schema, https://w3id.org/chemrof", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Entity Materials and Reactions Ontological Framework" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.7q4gsz" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF" + "@id": "https://fairsharing.org/FAIRsharing.askzq4" }, { - "@id": "http://aber-owl.net/ontology/CHEMROF" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://chemkg.github.io/chemrof/" - }, - "https://bioregistry.io/schema/#0000005": "FullySpecifiedAtom", - "https://bioregistry.io/schema/#0000006": "https://chemkg.github.io/chemrof/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/CHEMROF/2/chemrof.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "https://chemkg.github.io/chemrof/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://chemkg.github.io/chemrof/FullySpecifiedAtom" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "chemrof" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/tctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Thai Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.thaiclinicaltrials.org" - }, - "https://bioregistry.io/schema/#0000005": "TCTR20230429001", - "https://bioregistry.io/schema/#0000006": "https://www.thaiclinicaltrials.org/show/$1", - "https://bioregistry.io/schema/#0000008": "^TCTR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.thaiclinicaltrials.org/show/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.thaiclinicaltrials.org/show/TCTR20230429001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tctr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/wikidata", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://fairsharing.org/FAIRsharing.vxz9pn" + }, { - "@id": "http://www.wikidata.org/entity/P4537" + "@id": "https://fairsharing.org/FAIRsharing.j7esqq" }, { - "@id": "http://www.wikidata.org/entity/P235" + "@id": "https://fairsharing.org/FAIRsharing.493qns" }, { - "@id": "http://www.wikidata.org/entity/P11430" + "@id": "https://fairsharing.org/FAIRsharing.84c1a7" }, { - "@id": "http://www.wikidata.org/entity/P3382" + "@id": "https://fairsharing.org/FAIRsharing.kj4pvk" }, { - "@id": "http://www.wikidata.org/entity/P9405" + "@id": "https://fairsharing.org/FAIRsharing.yytevr" }, { - "@id": "http://www.wikidata.org/entity/P3606" + "@id": "https://fairsharing.org/FAIRsharing.hakg7c" }, { - "@id": "http://www.wikidata.org/entity/P3519" + "@id": "https://fairsharing.org/FAIRsharing.1gr4tz" }, { - "@id": "http://www.wikidata.org/entity/P8117" + "@id": "https://fairsharing.org/FAIRsharing.ge1c3p" }, { - "@id": "http://www.wikidata.org/entity/P492" + "@id": "https://fairsharing.org/FAIRsharing.p06nme" }, { - "@id": "http://www.wikidata.org/entity/P6245" + "@id": "https://fairsharing.org/FAIRsharing.z4agsr" }, { - "@id": "http://www.wikidata.org/entity/P2084" + "@id": "https://fairsharing.org/FAIRsharing.mgxgza" }, { - "@id": "http://www.wikidata.org/entity/P10538" + "@id": "https://fairsharing.org/FAIRsharing.w9jvbt" }, { - "@id": "http://www.wikidata.org/entity/P5221" + "@id": "https://fairsharing.org/FAIRsharing.f73xhd" }, { - "@id": "http://www.wikidata.org/entity/P4926" + "@id": "https://fairsharing.org/FAIRsharing.ztvs34" }, { - "@id": "http://www.wikidata.org/entity/P232" + "@id": "https://fairsharing.org/FAIRsharing.na5xp" }, { - "@id": "http://www.wikidata.org/entity/P1692" + "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5" }, { - "@id": "http://www.wikidata.org/entity/P5270" + "@id": "https://fairsharing.org/FAIRsharing.g7jbvn" }, { - "@id": "http://www.wikidata.org/entity/P7718" + "@id": "https://fairsharing.org/FAIRsharing.6dba71" }, { - "@id": "http://www.wikidata.org/entity/P696" + "@id": "https://fairsharing.org/FAIRsharing.b1xD9f" }, { - "@id": "http://www.wikidata.org/entity/P1929" + "@id": "https://fairsharing.org/FAIRsharing.LYsiMd" }, { - "@id": "http://www.wikidata.org/entity/P3098" + "@id": "https://fairsharing.org/FAIRsharing.etp533" }, { - "@id": "http://www.wikidata.org/entity/P8656" + "@id": "https://fairsharing.org/FAIRsharing.3b36hk" }, { - "@id": "http://www.wikidata.org/entity/P662" + "@id": "https://fairsharing.org/FAIRsharing.x81wz8" }, { - "@id": "http://www.wikidata.org/entity/P638" + "@id": "https://fairsharing.org/FAIRsharing.a6r7zs" }, { - "@id": "http://www.wikidata.org/entity/P2064" + "@id": "https://fairsharing.org/FAIRsharing.9gqfpm" }, { - "@id": "http://www.wikidata.org/entity/P2153" + "@id": "https://fairsharing.org/FAIRsharing.6b77ac" }, { - "@id": "http://www.wikidata.org/entity/P830" + "@id": "https://fairsharing.org/FAIRsharing.wsfk5z" }, { - "@id": "http://www.wikidata.org/entity/P2892" + "@id": "https://fairsharing.org/FAIRsharing.p58bm4" }, { - "@id": "http://www.wikidata.org/entity/P8061" + "@id": "https://fairsharing.org/FAIRsharing.4dvtcz" }, { - "@id": "http://www.wikidata.org/entity/P11089" + "@id": "https://fairsharing.org/FAIRsharing.fe4816" }, { - "@id": "http://www.wikidata.org/entity/P3640" + "@id": "https://fairsharing.org/FAIRsharing.bg5xqs" }, { - "@id": "http://www.wikidata.org/entity/P1690" + "@id": "https://fairsharing.org/FAIRsharing.6dfe9b" }, { - "@id": "http://www.wikidata.org/entity/P3890" + "@id": "https://fairsharing.org/FAIRsharing.recas1" }, { - "@id": "http://www.wikidata.org/entity/P846" + "@id": "https://fairsharing.org/FAIRsharing.pktgc6" }, { - "@id": "http://www.wikidata.org/entity/P231" + "@id": "https://fairsharing.org/FAIRsharing.d3pqw7" }, { - "@id": "http://www.wikidata.org/entity/P7807" + "@id": "https://fairsharing.org/FAIRsharing.2jkxp5" }, { - "@id": "http://www.wikidata.org/entity/P234" + "@id": "https://fairsharing.org/FAIRsharing.egv2cz" }, { - "@id": "http://www.wikidata.org/entity/P592" + "@id": "https://fairsharing.org/FAIRsharing.ohbpNw" }, { - "@id": "http://www.wikidata.org/entity/P352" + "@id": "https://fairsharing.org/FAIRsharing.36pf8q" }, { - "@id": "http://www.wikidata.org/entity/P850" + "@id": "https://fairsharing.org/FAIRsharing.4cvwxa" }, { - "@id": "http://www.wikidata.org/entity/P9157" + "@id": "https://fairsharing.org/FAIRsharing.ncgh1j" }, { - "@id": "http://www.wikidata.org/entity/P2410" + "@id": "https://fairsharing.org/FAIRsharing.33yggg" }, { - "@id": "http://www.wikidata.org/entity/P3870" + "@id": "https://fairsharing.org/FAIRsharing.KcCjL7" }, { - "@id": "http://www.wikidata.org/entity/P2106" + "@id": "https://fairsharing.org/FAIRsharing.a4ww64" }, { - "@id": "http://www.wikidata.org/entity/P1925" + "@id": "https://fairsharing.org/FAIRsharing.cwx04e" }, { - "@id": "http://www.wikidata.org/entity/P1928" + "@id": "https://fairsharing.org/FAIRsharing.wx5r6f" }, { - "@id": "http://www.wikidata.org/entity/P652" + "@id": "https://fairsharing.org/FAIRsharing.jjb2p2" }, { - "@id": "http://www.wikidata.org/entity/P233" + "@id": "https://fairsharing.org/FAIRsharing.qje0v8" }, { - "@id": "http://www.wikidata.org/entity/P1930" + "@id": "https://fairsharing.org/FAIRsharing.5Pze7l" }, { - "@id": "http://www.wikidata.org/entity/P3329" + "@id": "https://fairsharing.org/FAIRsharing.4fa657" }, { - "@id": "http://www.wikidata.org/entity/P4229" + "@id": "https://fairsharing.org/FAIRsharing.3e0sn4" }, { - "@id": "http://www.wikidata.org/entity/P6049" + "@id": "https://fairsharing.org/FAIRsharing.dk451a" }, { - "@id": "http://www.wikidata.org/entity/P2689" + "@id": "https://fairsharing.org/FAIRsharing.ry1ezg" }, { - "@id": "http://www.wikidata.org/entity/P3852" + "@id": "https://fairsharing.org/FAIRsharing.ayjdsm" }, { - "@id": "http://www.wikidata.org/entity/P699" + "@id": "https://fairsharing.org/FAIRsharing.2b04ae" }, { - "@id": "http://www.wikidata.org/entity/P593" + "@id": "https://fairsharing.org/FAIRsharing.CugtbQ" }, { - "@id": "http://www.wikidata.org/entity/P4338" + "@id": "https://fairsharing.org/FAIRsharing.s19src" }, { - "@id": "http://www.wikidata.org/entity/P3406" + "@id": "https://fairsharing.org/FAIRsharing.5p12xh" }, { - "@id": "http://www.wikidata.org/entity/P2871" + "@id": "https://fairsharing.org/FAIRsharing.c6vhm3" }, { - "@id": "http://www.wikidata.org/entity/P3811" + "@id": "https://fairsharing.org/FAIRsharing.3zqvaf" }, { - "@id": "http://www.wikidata.org/entity/P351" + "@id": "https://fairsharing.org/FAIRsharing.v8se8r" }, { - "@id": "http://www.wikidata.org/entity/P3151" + "@id": "https://fairsharing.org/FAIRsharing.akmeb9" }, { - "@id": "http://www.wikidata.org/entity/P1153" + "@id": "https://fairsharing.org/FAIRsharing.9w8ea0" }, { - "@id": "http://www.wikidata.org/entity/P3841" + "@id": "https://fairsharing.org/FAIRsharing.kj3m5n" }, { - "@id": "http://www.wikidata.org/entity/P685" + "@id": "https://fairsharing.org/FAIRsharing.yk38tw" }, { - "@id": "http://www.wikidata.org/entity/P3088" + "@id": "https://fairsharing.org/FAIRsharing.4qyf0f" }, { - "@id": "http://www.wikidata.org/entity/P8121" + "@id": "https://fairsharing.org/FAIRsharing.7xkx69" }, { - "@id": "http://www.wikidata.org/entity/P3636" + "@id": "https://fairsharing.org/FAIRsharing.wf28wm" }, { - "@id": "http://www.wikidata.org/entity/P267" + "@id": "https://fairsharing.org/FAIRsharing.9e9683" }, { - "@id": "http://www.wikidata.org/entity/P686" + "@id": "https://fairsharing.org/FAIRsharing.4e3qh9" }, { - "@id": "http://www.wikidata.org/entity/P815" + "@id": "https://fairsharing.org/FAIRsharing.62qk8w" }, { - "@id": "http://www.wikidata.org/entity/P4616" + "@id": "https://fairsharing.org/FAIRsharing.h5f091" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://fairsharing.org/FAIRsharing.ezwdhz" }, { - "@id": "http://www.wikidata.org/entity/P7720" + "@id": "https://fairsharing.org/FAIRsharing.91yrz6" }, { - "@id": "http://www.wikidata.org/entity/P842" + "@id": "https://fairsharing.org/FAIRsharing.brhpb0" }, { - "@id": "http://www.wikidata.org/entity/P7333" + "@id": "https://fairsharing.org/FAIRsharing.xn3pb3" }, { - "@id": "http://www.wikidata.org/entity/P4550" + "@id": "https://fairsharing.org/FAIRsharing.5rb3fk" }, { - "@id": "http://www.wikidata.org/entity/P671" + "@id": "https://fairsharing.org/FAIRsharing.669cnk" }, { - "@id": "http://www.wikidata.org/entity/P1294" + "@id": "https://fairsharing.org/FAIRsharing.4877h0" }, { - "@id": "http://www.wikidata.org/entity/P591" + "@id": "https://fairsharing.org/FAIRsharing.5tfcy8" }, { - "@id": "http://www.wikidata.org/entity/P3951" + "@id": "https://fairsharing.org/FAIRsharing.17zapb" }, { - "@id": "http://www.wikidata.org/entity/P4495" + "@id": "https://fairsharing.org/FAIRsharing.g78mbm" }, { - "@id": "http://www.wikidata.org/entity/P698" + "@id": "https://fairsharing.org/FAIRsharing.c4e46c" }, { - "@id": "http://www.wikidata.org/entity/P3201" + "@id": "https://fairsharing.org/FAIRsharing.7sfedh" }, { - "@id": "http://www.wikidata.org/entity/P5501" + "@id": "https://fairsharing.org/FAIRsharing.5701h1" }, { - "@id": "http://www.wikidata.org/entity/P663" + "@id": "https://fairsharing.org/FAIRsharing.f69084" }, { - "@id": "http://www.wikidata.org/entity/P2063" + "@id": "https://fairsharing.org/FAIRsharing.xhwrnr" }, { - "@id": "http://www.wikidata.org/entity/P494" + "@id": "https://fairsharing.org/FAIRsharing.8hcczk" }, { - "@id": "http://www.wikidata.org/entity/P5683" + "@id": "https://fairsharing.org/FAIRsharing.y00hz4" }, { - "@id": "http://www.wikidata.org/entity/P1421" + "@id": "https://fairsharing.org/FAIRsharing.9j4wh2" }, { - "@id": "http://www.wikidata.org/entity/P557" + "@id": "https://fairsharing.org/FAIRsharing.2y1KMt" }, { - "@id": "http://www.wikidata.org/entity/P4901" + "@id": "https://fairsharing.org/FAIRsharing.g0a7s0" }, { - "@id": "http://www.wikidata.org/entity/P493" + "@id": "https://fairsharing.org/FAIRsharing.ny9vnm" }, { - "@id": "http://www.wikidata.org/entity/P11931" + "@id": "https://fairsharing.org/FAIRsharing.xhpc3h" }, { - "@id": "http://www.wikidata.org/entity/P2062" + "@id": "https://fairsharing.org/FAIRsharing.fc3431" }, { - "@id": "http://www.wikidata.org/entity/P4394" + "@id": "https://fairsharing.org/FAIRsharing.31apg2" }, { - "@id": "http://www.wikidata.org/entity/P2796" + "@id": "https://fairsharing.org/FAIRsharing.9dpd18" }, { - "@id": "http://www.wikidata.org/entity/P3860" + "@id": "https://fairsharing.org/FAIRsharing.hmgte8" }, { - "@id": "http://www.wikidata.org/entity/P3345" + "@id": "https://fairsharing.org/FAIRsharing.2ck3st" }, { - "@id": "http://www.wikidata.org/entity/P2065" + "@id": "https://fairsharing.org/FAIRsharing.h2wrt2" }, { - "@id": "http://www.wikidata.org/entity/P1579" + "@id": "https://fairsharing.org/FAIRsharing.fgd5gq" }, { - "@id": "http://www.wikidata.org/entity/P3431" + "@id": "https://fairsharing.org/FAIRsharing.96f3gm" }, { - "@id": "http://www.wikidata.org/entity/P7260" + "@id": "https://fairsharing.org/FAIRsharing.d88s6e" }, { - "@id": "http://www.wikidata.org/entity/P1554" + "@id": "https://fairsharing.org/FAIRsharing.mp0rwf" }, { - "@id": "http://www.wikidata.org/entity/P5458" + "@id": "https://fairsharing.org/FAIRsharing.e3t0yw" }, { - "@id": "http://www.wikidata.org/entity/P1693" + "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N" }, { - "@id": "http://www.wikidata.org/entity/P1832" + "@id": "https://fairsharing.org/FAIRsharing.ss78t4" }, { - "@id": "http://www.wikidata.org/entity/P1748" + "@id": "https://fairsharing.org/FAIRsharing.9kahy4" }, { - "@id": "http://www.wikidata.org/entity/P486" + "@id": "https://fairsharing.org/FAIRsharing.9vtwjs" }, { - "@id": "http://www.wikidata.org/entity/P11955" + "@id": "https://fairsharing.org/FAIRsharing.sjf113" }, { - "@id": "http://www.wikidata.org/entity/P2275" + "@id": "https://fairsharing.org/FAIRsharing.nygmp7" }, { - "@id": "http://www.wikidata.org/entity/P3289" + "@id": "https://fairsharing.org/FAIRsharing.q9j2e3" }, { - "@id": "http://www.wikidata.org/entity/P356" + "@id": "https://fairsharing.org/FAIRsharing.da493y" }, { - "@id": "http://www.wikidata.org/entity/P10074" + "@id": "https://fairsharing.org/FAIRsharing.q053vb" }, { - "@id": "http://www.wikidata.org/entity/P7963" + "@id": "https://fairsharing.org/FAIRsharing.yecp83" }, { - "@id": "http://www.wikidata.org/entity/P6778" + "@id": "https://fairsharing.org/FAIRsharing.g0c5qn" }, { - "@id": "http://www.wikidata.org/entity/P299" + "@id": "https://fairsharing.org/FAIRsharing.6bd5k6" }, { - "@id": "http://www.wikidata.org/entity/P2926" + "@id": "https://fairsharing.org/FAIRsharing.8t18te" }, { - "@id": "http://www.wikidata.org/entity/P4971" + "@id": "https://fairsharing.org/FAIRsharing.eqgjeq" }, { - "@id": "http://www.wikidata.org/entity/P3590" + "@id": "https://fairsharing.org/FAIRsharing.7fnx38" }, { - "@id": "http://www.wikidata.org/entity/P305" + "@id": "https://fairsharing.org/FAIRsharing.bxc508" }, { - "@id": "http://www.wikidata.org/entity/P2576" + "@id": "https://fairsharing.org/FAIRsharing.pda11d" }, { - "@id": "http://www.wikidata.org/entity/P354" + "@id": "https://fairsharing.org/FAIRsharing.2gpf81" }, { - "@id": "http://www.wikidata.org/entity/P6861" + "@id": "https://fairsharing.org/FAIRsharing.d5ff6e" }, { - "@id": "http://www.wikidata.org/entity/P683" + "@id": "https://fairsharing.org/FAIRsharing.5NhJFK" }, { - "@id": "http://www.wikidata.org/entity/P3117" + "@id": "https://fairsharing.org/FAIRsharing.8nq9t6" }, { - "@id": "http://www.wikidata.org/entity/P5299" + "@id": "https://fairsharing.org/FAIRsharing.mya1ff" }, { - "@id": "http://www.wikidata.org/entity/P818" + "@id": "https://fairsharing.org/FAIRsharing.3me82d" }, { - "@id": "http://www.wikidata.org/entity/P11623" + "@id": "https://fairsharing.org/FAIRsharing.ATwSZG" }, { - "@id": "http://www.wikidata.org/entity/P1402" + "@id": "https://fairsharing.org/FAIRsharing.6wf1zw" }, { - "@id": "http://www.wikidata.org/entity/P353" + "@id": "https://fairsharing.org/FAIRsharing.a0k4cd" }, { - "@id": "http://www.wikidata.org/entity/P595" + "@id": "https://fairsharing.org/FAIRsharing.tke3y2" }, { - "@id": "http://www.wikidata.org/entity/P1154" + "@id": "https://fairsharing.org/FAIRsharing.b34b43" }, { - "@id": "http://www.wikidata.org/entity/P8697" + "@id": "https://fairsharing.org/FAIRsharing.10zsxb" }, { - "@id": "http://www.wikidata.org/entity/P8372" + "@id": "https://fairsharing.org/FAIRsharing.h3y42f" }, { - "@id": "http://www.wikidata.org/entity/P2646" + "@id": "https://fairsharing.org/FAIRsharing.fx0mw7" }, { - "@id": "http://www.wikidata.org/entity/P1578" + "@id": "https://fairsharing.org/FAIRsharing.93ee19" }, { - "@id": "http://www.wikidata.org/entity/P7471" + "@id": "https://fairsharing.org/FAIRsharing.ntyq70" }, { - "@id": "http://www.wikidata.org/entity/P11277" + "@id": "https://fairsharing.org/FAIRsharing.wpt5mp" }, { - "@id": "http://www.wikidata.org/entity/P496" + "@id": "https://fairsharing.org/FAIRsharing.tc6df8" }, { - "@id": "http://www.wikidata.org/entity/P594" + "@id": "https://fairsharing.org/FAIRsharing.y9x8wk" }, { - "@id": "http://www.wikidata.org/entity/P563" + "@id": "https://fairsharing.org/FAIRsharing.c886cd" }, { - "@id": "http://www.wikidata.org/entity/P4732" + "@id": "https://fairsharing.org/FAIRsharing.t9fvdn" }, { - "@id": "http://www.wikidata.org/entity/P4355" + "@id": "https://fairsharing.org/FAIRsharing.kqt2h2" }, { - "@id": "http://www.wikidata.org/entity/P11198" + "@id": "https://fairsharing.org/FAIRsharing.dq34p2" }, { - "@id": "http://www.wikidata.org/entity/P932" + "@id": "https://fairsharing.org/FAIRsharing.ja9cdq" }, { - "@id": "http://www.wikidata.org/entity/P244" + "@id": "https://fairsharing.org/FAIRsharing.5a4y1y" }, { - "@id": "http://www.wikidata.org/entity/P2057" + "@id": "https://fairsharing.org/FAIRsharing.2basyz" }, { - "@id": "http://www.wikidata.org/entity/P2946" + "@id": "https://fairsharing.org/FAIRsharing.61c2x6" }, { - "@id": "http://www.wikidata.org/entity/P8691" + "@id": "https://fairsharing.org/FAIRsharing.aq280w" }, { - "@id": "http://www.wikidata.org/entity/P1155" + "@id": "https://fairsharing.org/FAIRsharing.swbypy" }, { - "@id": "http://www.wikidata.org/entity/P7001" + "@id": "https://fairsharing.org/FAIRsharing.5pfx4r" }, { - "@id": "http://www.wikidata.org/entity/P1550" + "@id": "https://fairsharing.org/FAIRsharing.bfcfd0" }, { - "@id": "http://www.wikidata.org/entity/P2115" + "@id": "https://fairsharing.org/FAIRsharing.mzc066" }, { - "@id": "http://www.wikidata.org/entity/P4866" + "@id": "https://fairsharing.org/FAIRsharing.b549b8" }, { - "@id": "http://www.wikidata.org/entity/P3937" + "@id": "https://fairsharing.org/FAIRsharing.d7f0a9" }, { - "@id": "http://www.wikidata.org/entity/P938" + "@id": "https://fairsharing.org/FAIRsharing.4ndncv" }, { - "@id": "http://www.wikidata.org/entity/P2870" + "@id": "https://fairsharing.org/FAIRsharing.phk7dd" }, { - "@id": "http://www.wikidata.org/entity/P4317" + "@id": "https://fairsharing.org/FAIRsharing.3d4jx0" }, { - "@id": "http://www.wikidata.org/entity/P661" + "@id": "https://fairsharing.org/FAIRsharing.eeyne8" }, { - "@id": "http://www.wikidata.org/entity/P11956" + "@id": "https://fairsharing.org/FAIRsharing.9aa0zp" }, { - "@id": "http://www.wikidata.org/entity/P11199" + "@id": "https://fairsharing.org/FAIRsharing.p1sejz" }, { - "@id": "http://www.wikidata.org/entity/P5806" + "@id": "https://fairsharing.org/FAIRsharing.1rj558" }, { - "@id": "http://www.wikidata.org/entity/P6209" + "@id": "https://fairsharing.org/FAIRsharing.psn0h2" }, { - "@id": "http://www.wikidata.org/entity/P715" + "@id": "https://fairsharing.org/FAIRsharing.6375zh" }, { - "@id": "http://www.wikidata.org/entity/P3853" + "@id": "https://fairsharing.org/FAIRsharing.fj07xj" }, { - "@id": "http://www.wikidata.org/entity/P2158" + "@id": "https://fairsharing.org/FAIRsharing.p52pzj" }, { - "@id": "http://www.wikidata.org/entity/P6689" + "@id": "https://fairsharing.org/FAIRsharing.n66krd" }, { - "@id": "http://www.wikidata.org/entity/P11949" + "@id": "https://fairsharing.org/FAIRsharing.g4n8sw" }, { - "@id": "http://www.wikidata.org/entity/P1156" + "@id": "https://fairsharing.org/FAIRsharing.CWzk3C" }, { - "@id": "http://www.wikidata.org/entity/P1391" + "@id": "https://fairsharing.org/FAIRsharing.XykycZ" }, { - "@id": "http://www.wikidata.org/entity/P675" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wikidata Property" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.wikidata.org" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "P683" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://www.wikidata.org/entity/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Na9570be4d12143dc8c7839a5cbde1d74" - } - }, - { - "@id": "_:Na9570be4d12143dc8c7839a5cbde1d74", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WikiData Support" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "info@wikidata.org" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012755", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/seinet", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary about species to support the environmental research community in Arizona and New Mexico", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Southwestern Environmental Information Network" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P6209" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://swbiodiversity.org/seinet/index.php" - }, - "https://bioregistry.io/schema/#0000005": "762", - "https://bioregistry.io/schema/#0000006": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0002-8169-9049" - }, - "https://bioregistry.io/schema/#0000024": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=762" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "seinet" - } - }, - { - "@id": "https://registry.identifiers.org/registry/neurondb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-8682-0568", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rudolf T. Pillich" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rpillich@ucsd.edu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/beetlebase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/multicellds.snapshot", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://fairsharing.org/FAIRsharing.2mayq0" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://fairsharing.org/FAIRsharing.6L6MjA" }, { - "@id": "https://bioregistry.io/registry/multicellds" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MultiCellDS Digital snapshot" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.w4x6n4" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT" + "@id": "https://fairsharing.org/FAIRsharing.beb855" }, { - "@id": "https://registry.identifiers.org/registry/multicellds.snapshot" + "@id": "https://fairsharing.org/FAIRsharing.zhwa8x" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://multicellds.org/MultiCellDB.php" - }, - "https://bioregistry.io/schema/#0000005": "MCDS_S_0000000001", - "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", - "https://bioregistry.io/schema/#0000008": "^MCDS_S_[a-zA-Z0-9]{1,10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://multicellds.org/MultiCellDB/MCDS_S_0000000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "multicellds.snapshot" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/pscdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Structural Change Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.evfe2s" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb" + "@id": "https://fairsharing.org/FAIRsharing.fcwyhz" }, { - "@id": "https://registry.identifiers.org/registry/pscdb" + "@id": "https://fairsharing.org/FAIRsharing.fs1z27" }, { - "@id": "https://fairsharing.org/FAIRsharing.3d4jx0" + "@id": "https://fairsharing.org/FAIRsharing.jcg19w" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html" - }, - "https://bioregistry.io/schema/#0000005": "051", - "https://bioregistry.io/schema/#0000006": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pscdb:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/051.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pscdb" - } - }, - { - "@id": "http://edamontology.org/data_2386", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FOVT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://orcid.org/0000-0002-9943-2342", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EOL Secretariat" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "secretariat@eol.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3636", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/mfo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medaka fish anatomy and development" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.aVmpKl" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFO" + "@id": "https://fairsharing.org/FAIRsharing.5q1p14" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFO" + "@id": "https://fairsharing.org/FAIRsharing.pqzyd5" }, { - "@id": "https://registry.bio2kg.org/resource/mfo" + "@id": "https://fairsharing.org/FAIRsharing.wkdjpb" }, { - "@id": "https://www.obofoundry.org/ontology/mfo" + "@id": "https://fairsharing.org/FAIRsharing.2s4n8r" }, { - "@id": "http://aber-owl.net/ontology/MFO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.pzvw40" + }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.kkq6pw" }, { - "@value": "anatomy" + "@id": "https://fairsharing.org/FAIRsharing.k008w7" }, { - "@value": "fish" + "@id": "https://fairsharing.org/FAIRsharing.4g5qcw" }, { - "@value": "development" + "@id": "https://fairsharing.org/FAIRsharing.c26a4e" }, { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ani.embl.de:8080/mepd/" - }, - "https://bioregistry.io/schema/#0000005": "MFO_0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mfo.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1548-3290" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "mfo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pkdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-2118-035X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Adrien Rougny" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "adrienrougny@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OARCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0172", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/tgd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tetrahymena Genome Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.2ffmsb" + }, { - "@id": "https://registry.identifiers.org/registry/tgd" + "@id": "https://fairsharing.org/FAIRsharing.93g1th" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd" + "@id": "https://fairsharing.org/FAIRsharing.f63h4k" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGD" + "@id": "https://fairsharing.org/FAIRsharing.j0fa1d" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD" + "@id": "https://fairsharing.org/FAIRsharing.xs6t67" }, { - "@id": "https://registry.bio2kg.org/resource/tgd" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ciliate.org/index.php/" - }, - "https://bioregistry.io/schema/#0000005": "TTHERM_00648910", - "https://bioregistry.io/schema/#0000006": "http://ciliate.org/index.php/feature/details/$1", - "https://bioregistry.io/schema/#0000008": "^TTHERM\\_\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ciliate.org/index.php/feature/details/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ciliate.org/index.php/feature/details/TTHERM_00648910" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tgd" - } - }, - { - "@id": "http://aber-owl.net/ontology/MAXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/hl7", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "HL7 External Code Systems are stored within the greater OID system" - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://fairsharing.org/FAIRsharing.65tdnz" + }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175" + "@id": "https://fairsharing.org/FAIRsharing.vs7865" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59" + "@id": "https://fairsharing.org/FAIRsharing.2q8c28" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340" + "@id": "https://fairsharing.org/FAIRsharing.aa0eat" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120" + "@id": "https://fairsharing.org/FAIRsharing.3J6NYn" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229" + "@id": "https://fairsharing.org/FAIRsharing.1a27h8" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.88" + "@id": "https://fairsharing.org/FAIRsharing.tw4q8x" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254" + "@id": "https://fairsharing.org/FAIRsharing.2sqcxs" }, { - "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4" + "@id": "https://fairsharing.org/FAIRsharing.0a2576" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256" + "@id": "https://fairsharing.org/FAIRsharing.3da56b" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96" + "@id": "https://fairsharing.org/FAIRsharing.ex3fqk" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8" + "@id": "https://fairsharing.org/FAIRsharing.mqvqde" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116" + "@id": "https://fairsharing.org/FAIRsharing.k5k0yh" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77" + "@id": "https://fairsharing.org/FAIRsharing.6ccbe6" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126" + "@id": "https://fairsharing.org/FAIRsharing.wpxab1" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.43" + "@id": "https://fairsharing.org/FAIRsharing.dvyrsz" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177" + "@id": "https://fairsharing.org/FAIRsharing.pfg82t" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90" + "@id": "https://fairsharing.org/FAIRsharing.hFLKCn" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281" + "@id": "https://fairsharing.org/FAIRsharing.2f3180" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163" + "@id": "https://fairsharing.org/FAIRsharing.2mk2zb" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283" + "@id": "https://fairsharing.org/FAIRsharing.bcjrnq" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105" + "@id": "https://fairsharing.org/FAIRsharing.f928f1" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3" + "@id": "https://fairsharing.org/FAIRsharing.c86b48" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284" + "@id": "https://fairsharing.org/FAIRsharing.dstf7h" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347" + "@id": "https://fairsharing.org/FAIRsharing.xwqg9h" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319" + "@id": "https://fairsharing.org/FAIRsharing.ca48xs" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208" + "@id": "https://fairsharing.org/FAIRsharing.6yNXYK" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.73" + "@id": "https://fairsharing.org/FAIRsharing.aqhv1y" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2" + "@id": "https://fairsharing.org/FAIRsharing.7zffgc" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86" + "@id": "https://fairsharing.org/FAIRsharing.qnkw45" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1" + "@id": "https://fairsharing.org/FAIRsharing.e7e609" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4" + "@id": "https://fairsharing.org/FAIRsharing.j0ezpm" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42" + "@id": "https://fairsharing.org/FAIRsharing.99da5f" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205" + "@id": "https://fairsharing.org/FAIRsharing.j0t0pe" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62" + "@id": "https://fairsharing.org/FAIRsharing.1fbc5y" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173" + "@id": "https://fairsharing.org/FAIRsharing.67sssf" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344" + "@id": "https://fairsharing.org/FAIRsharing.rja8qp" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209" + "@id": "https://fairsharing.org/FAIRsharing.8ktkqy" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69" + "@id": "https://fairsharing.org/FAIRsharing.6tgyxf" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206" + "@id": "https://fairsharing.org/FAIRsharing.pbbnwa" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107" + "@id": "https://fairsharing.org/FAIRsharing.mye76w" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128" + "@id": "https://fairsharing.org/FAIRsharing.pdwqcr" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174" + "@id": "https://fairsharing.org/FAIRsharing.b7z8by" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339" + "@id": "https://fairsharing.org/FAIRsharing.hzdzq8" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119" + "@id": "https://fairsharing.org/FAIRsharing.847069" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280" + "@id": "https://fairsharing.org/FAIRsharing.rkpmhn" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HL7 External Code Systems" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://www.oid-info.com/get/2.16.840.1.113883.6" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "2.16.840.1.113883.6.88" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://oid-info.com/get/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8b6898a7af184960a90f42a99249e6c8" - } - }, - { - "@id": "_:N8b6898a7af184960a90f42a99249e6c8", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "W. Ted Klein" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ted@tklein.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/mirnest", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "miRNEST" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.3ngg40" + }, { - "@id": "https://registry.bio2kg.org/resource/mirnest" + "@id": "https://fairsharing.org/FAIRsharing.zzgvrv" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST" + "@id": "https://fairsharing.org/FAIRsharing.7C0aVE" }, { - "@id": "https://fairsharing.org/FAIRsharing.5pfx4r" + "@id": "https://fairsharing.org/FAIRsharing.dg1f0e" }, { - "@id": "https://registry.identifiers.org/registry/mirnest" + "@id": "https://fairsharing.org/FAIRsharing.63m4ss" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.v0hbjs" + }, { - "@value": "expression" + "@id": "https://fairsharing.org/FAIRsharing.85k1jm" }, { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.6bc7h9" }, { - "@value": "prediction" + "@id": "https://fairsharing.org/FAIRsharing.atygwy" }, { - "@value": "genomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rhesus.amu.edu.pl/mirnest/copy/" - }, - "https://bioregistry.io/schema/#0000005": "MNEST029358", - "https://bioregistry.io/schema/#0000006": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^MNEST\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=MNEST029358" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirnest" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-9990-8331", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alexander Diehl" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "addiehl@buffalo.edu" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EDAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hpa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/nxr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Xenopus Resource" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.dpkb5f" + }, { - "@value": "laevis" + "@id": "https://fairsharing.org/FAIRsharing.x989d5" }, { - "@value": "xenopus" + "@id": "https://fairsharing.org/FAIRsharing.2m4ms9" }, { - "@value": "tropicalis" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mbl.edu/xenopus/" - }, - "https://bioregistry.io/schema/#0000005": "0024", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:NXR_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:NXR_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/resolver/RRID:NXR_0024" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nxr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_350", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/massbank", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/MassBank" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MassBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.pv0ezt" + }, { - "@id": "https://fairsharing.org/FAIRsharing.dk451a" + "@id": "https://fairsharing.org/FAIRsharing.k893xa" }, { - "@id": "http://www.wikidata.org/entity/P6689" + "@id": "https://fairsharing.org/FAIRsharing.mjnypw" }, { - "@id": "https://registry.identifiers.org/registry/massbank" + "@id": "https://fairsharing.org/FAIRsharing.zsgmvd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK" + "@id": "https://fairsharing.org/FAIRsharing.we2r5a" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ" + }, { - "@value": "physics" + "@id": "https://fairsharing.org/FAIRsharing.35e1c3" }, { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.gq1xtx" }, { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.massbank.jp" - }, - "https://bioregistry.io/schema/#0000005": "MSBNK-IPB_Halle-PB000166", - "https://bioregistry.io/schema/#0000006": "https://massbank.jp/RecordDisplay?id=$1", - "https://bioregistry.io/schema/#0000008": "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9744-8914" - }, - "https://bioregistry.io/schema/#0000024": "https://massbank.jp/RecordDisplay?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://massbank.jp/RecordDisplay?id=MSBNK-IPB_Halle-PB000166" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "massbank" - } - }, - { - "@id": "https://bioregistry.io/registry/slkbase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SUM Breast Cancer Cell Line Knowledge Base" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sumlineknowledgebase.com/" - }, - "https://bioregistry.io/schema/#0000005": "3618", - "https://bioregistry.io/schema/#0000006": "https://sumlineknowledgebase.com/?page_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://sumlineknowledgebase.com/?page_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sumlineknowledgebase.com/?page_id=3618" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "slkbase" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ogsf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pathguide", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/n2t", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Name-to-Thing" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://n2t.net" - }, - "https://bioregistry.io/schema/#0000005": "chebi", - "https://bioregistry.io/schema/#0000006": "https://n2t.net/$1:", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/n2t:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://n2t.net/chebi:" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-7604-8041", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John Kunze" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://fairsharing.org/FAIRsharing.aae3v6" + }, { - "@value": "jakkbl@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.sjhvyy" }, { - "@value": "jak@ucop.edu" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/unigene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniGene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.cz9cnp" + }, { - "@id": "https://www.re3data.org/repository/r3d100010774" + "@id": "https://fairsharing.org/FAIRsharing.7e9cff" }, { - "@id": "https://registry.identifiers.org/registry/unigene" + "@id": "https://fairsharing.org/FAIRsharing.shm2f2" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene" + "@id": "https://fairsharing.org/FAIRsharing.jwra3e" }, { - "@id": "https://registry.bio2kg.org/resource/unigene" + "@id": "https://fairsharing.org/FAIRsharing.d31795" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE" + "@id": "https://fairsharing.org/FAIRsharing.yqn857" }, { - "@id": "https://fairsharing.org/FAIRsharing.ge1c3p" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.4c7f91" + }, { - "@value": "life science" + "@id": "https://fairsharing.org/FAIRsharing.4c0b6b" }, { - "@value": "dna" + "@id": "https://fairsharing.org/FAIRsharing.3axym7" }, { - "@value": "gene" + "@id": "https://fairsharing.org/FAIRsharing.qe8tz8" }, { - "@value": "gene expression" + "@id": "https://fairsharing.org/FAIRsharing.ngv2xx" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/unigene" - }, - "https://bioregistry.io/schema/#0000005": "4900", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=4900" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "unigene" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/nmdc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-0412-9018", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Harry E. Pence" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pencehe@oneonta.edu" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3088", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/lincs.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LINCS Cell" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.nj16g" + }, { - "@id": "https://registry.identifiers.org/registry/lincs.cell" + "@id": "https://fairsharing.org/FAIRsharing.z0p37e" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP" + "@id": "https://fairsharing.org/FAIRsharing.9sb9qh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL" + "@id": "https://fairsharing.org/FAIRsharing.fhcmwq" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lincsportal.ccs.miami.edu/cells/" - }, - "https://bioregistry.io/schema/#0000005": "LCL-2085", - "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/cells/#/view/$1", - "https://bioregistry.io/schema/#0000008": "^(LCL|LDC|ES|LSC|LPC)-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "LINCS_LDP" - }, - "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/cells/#/view/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://lincsportal.ccs.miami.edu/cells/#/view/LCL-2085" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lincs.cell" - } - }, - { - "@id": "http://aber-owl.net/ontology/EXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/scpd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database containing promotor sequences found in Saccharomyces cerevisiae.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Saccharomyces cerevisiae promoter database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/scpd" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.7k8zh0" + }, { - "@value": "rna" + "@id": "https://fairsharing.org/FAIRsharing.p3bzqb" }, { - "@value": "dna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rulai.cshl.edu/SCPD/" - }, - "https://bioregistry.io/schema/#0000005": "CDC2", - "https://bioregistry.io/schema/#0000006": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?CDC2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scpd" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/po", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-0948-4537", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Frederique Lisacek" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "frederique.lisacek@isb-sib.ch" - } - }, - { - "@id": "https://registry.identifiers.org/registry/arrayexpress", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mirnest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/gear", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/IGS/gEAR" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Expression Analysis Resource" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://umgear.org" - }, - "https://bioregistry.io/schema/#0000005": "d.a59037e8", - "https://bioregistry.io/schema/#0000006": "https://umgear.org/p?id=$1", - "https://bioregistry.io/schema/#0000008": "^[dp]\\.[a-z0-9]{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5705-5710" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://umgear.org/p?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://umgear.org/p?id=d.a59037e8" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gear" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/epd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eukaryotic Promoter Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.1c1738" + }, { - "@id": "https://fairsharing.org/FAIRsharing.yk1krv" + "@id": "https://fairsharing.org/FAIRsharing.AYegqK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd" + "@id": "https://fairsharing.org/FAIRsharing.4jg0qw" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPD" + "@id": "https://fairsharing.org/FAIRsharing.ay74mj" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD" + "@id": "https://fairsharing.org/FAIRsharing.0b7e54" }, { - "@id": "http://edamontology.org/data_2386" + "@id": "https://fairsharing.org/FAIRsharing.ftamrc" }, { - "@id": "https://www.uniprot.org/database/DB-0205" + "@id": "https://fairsharing.org/FAIRsharing.qcceez" }, { - "@id": "https://registry.identifiers.org/registry/epd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.aI1J5W" + }, { - "@value": "biology" + "@id": "https://fairsharing.org/FAIRsharing.vssch2" }, { - "@value": "bioinformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://epd.expasy.org/epd/" - }, - "https://bioregistry.io/schema/#0000005": "TA_H3", - "https://bioregistry.io/schema/#0000006": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z-_0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0816-7775" - }, - "https://bioregistry.io/schema/#0000024": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=TA_H3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "epd" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/pav", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "http://pav-ontology.github.io/pav/" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Provenance, Authoring, and Versioning Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://fairsharing.org/FAIRsharing.wnk2eq" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/PAV" + "@id": "https://fairsharing.org/FAIRsharing.5mr9c5" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/pav" + "@id": "https://fairsharing.org/FAIRsharing.tx95wa" }, { - "@id": "http://aber-owl.net/ontology/PAV" + "@id": "https://fairsharing.org/FAIRsharing.w5ntfd" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav" + "@id": "https://fairsharing.org/FAIRsharing.5h3maw" }, { - "@id": "https://fairsharing.org/FAIRsharing.nbfwwv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://fairsharing.org/FAIRsharing.cnwx8c" + }, { - "@value": "ontology" + "@id": "https://fairsharing.org/FAIRsharing.af5655" }, { - "@value": "subject agnostic" + "@id": "https://fairsharing.org/FAIRsharing.s3r6sk" }, { - "@value": "data management" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pav-ontology.github.io/pav/" - }, - "https://bioregistry.io/schema/#0000005": "authoredBy", - "https://bioregistry.io/schema/#0000006": "http://purl.org/pav/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z][a-zA-Z]+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/PAV/3/pav.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9842-9718" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/pav/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/pav/authoredBy" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pav" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mint", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-2346-5201", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Carissa Park" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "caripark@iastate.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CARO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://fairsharing.org/FAIRsharing.sp3szt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5dnjs2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wvpgwn" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.amcv1e" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.v9fya8" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mxx5rp" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w69t6r" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w6cxgb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q3b39v" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6hna78" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8jsya3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vq28qp" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f1777e" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gdszhh" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pn1sr5" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6h8d2r" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wb0txg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dw22y3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kg1x4z" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bpxgb6" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rfLD2u" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d2d84f" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h8r843" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9y8f0n" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mr293q" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.309v57" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gf8yhy" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8qcbs0" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ap169a" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7mnebr" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.p77ph9" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.azqskx" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.901nkj" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vr52p3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7c683b" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ae8hpt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.0a674c" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f0bxfg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.np2wfz" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e1byny" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y5jcwa" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pmg2vd" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jedbbt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7g1bzj" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qt3w7z" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kx2md1" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q47I0t" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.27w8k0" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c06f1e" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hw3bh2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2bdvmk" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.63520c" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dff3ef" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c7f4d7" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c9psgb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.agvc7y" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wvp1t7" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q09hck" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.m40bhw" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qrrvyk" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5hc8vt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7rngj0" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.595710" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ea287c" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8wm364" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.68b03f" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3xwMon" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pxr7x2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xz5m1a" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.z1czxj" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d064y6" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mm72as" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dxx0c" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t19hpa" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.n8pxvx" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e4n3an" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.efv7gw" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.tppk10" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ad3137" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4ef690" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y1mmbv" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cpneh8" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1evfpc" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.x39h5y" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c23cqq" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.619eqr" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1414v8" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4vr0ys" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vdbagq" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c7f365" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.yk1krv" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.40j2vd" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.knp11s" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qvxhb1" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.v9n3gk" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4m97ah" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ny3z9j" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e7skwg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qx2rvz" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vppyga" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hkk309" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xgcyyn" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vy0p71" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.39fd58" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h4j3qm" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vwc6bd" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b220d4" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b9znd5" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.10gr18" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.530e61" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j9y503" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.45a10e" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vajn3f" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8b6wfq" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t3snf" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c54ywe" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.27rndz" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sm90nh" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kd39j4" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bg7bb6" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.62evqh" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.karvzj" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y2qkst" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.azr389" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qp211a" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bdn9br" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4gm9gt" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g7t2hv" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.x56jsy" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rj3kj5" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.nx58jg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.aSszvY" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mf91p5" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9te3ev" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.tp9z4q" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.250a8c" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.a14123" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.353yat" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kj336a" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zx1td8" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.rbjs3e" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.czzmpg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2ma4gq" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ttprgy" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hsbpq3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.djsbw2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5ab0n7" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.z656ab" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.48e326" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6xq0ee" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bgkyd7" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.efp5v2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.89e853" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bf8dsb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t1a232" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w4tncg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ddk9t9" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zv11j3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.284e1z" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g1qrqs" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g7b4rj" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2ajtcf" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jykmkw" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ad9d85" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dqnfkg" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e28v7g" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.js20q3" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ez2nhb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3q3kvn" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.910c39" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d95034" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cc3f2x" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.IziuCK" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j7j53" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FAIRSharing" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://fairsharing.org/" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "FAIRsharing.62qk8w" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://fairsharing.org/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7702-4495" } }, { - "@id": "https://registry.identifiers.org/registry/phytozome.locus", + "@id": "https://bioregistry.io/metaregistry/biocontext/MOP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/shex", + "@id": "https://bioregistry.io/registry/pride.project", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.", + "http://purl.org/dc/terms/description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Shape Expression Vocabulary" + "@value": "PRIDE Project" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "rdf" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE" }, { - "@value": "metadata" + "@id": "https://registry.identifiers.org/registry/pride.project" }, { - "@value": "semantic web" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/ns/shex#" + "@id": "https://www.ebi.ac.uk/pride/" }, - "https://bioregistry.io/schema/#0000005": "TripleExpression", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/shex#$1", + "https://bioregistry.io/schema/#0000005": "PXD000440", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pride/archive/projects/$1", + "https://bioregistry.io/schema/#0000008": "^P(X|R)D\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/shex#", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pride/archive/projects/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/shex#TripleExpression" + "@id": "https://www.ebi.ac.uk/pride/archive/projects/PXD000440" }, "https://bioregistry.io/schema/#0000029": { - "@value": "shex" + "@value": "pride.project" } }, { - "@id": "https://bioregistry.io/registry/millipore", + "@id": "https://fairsharing.org/FAIRsharing.efp5v2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wrvze3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4971", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wb0txg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ncats.drug", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Merck Millipore (EMD Millipore)" + "@value": "NCATS Drugs" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.merckmillipore.com/" + "@id": "https://drugs.ncats.io/" }, - "https://bioregistry.io/schema/#0000005": "SCC111", - "https://bioregistry.io/schema/#0000006": "https://www.merckmillipore.com/catalogue/item/$1", + "https://bioregistry.io/schema/#0000005": "44259", + "https://bioregistry.io/schema/#0000006": "https://drugs.ncats.io/drug/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.merckmillipore.com/catalogue/item/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "inxight" + }, + { + "@value": "inxight-drugs" + } + ], + "https://bioregistry.io/schema/#0000024": "https://drugs.ncats.io/drug/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.merckmillipore.com/catalogue/item/SCC111" + "@id": "https://drugs.ncats.io/drug/44259" }, "https://bioregistry.io/schema/#0000029": { - "@value": "millipore" + "@value": "ncats.drug" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.90", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.sp3szt", + "@id": "https://registry.identifiers.org/registry/cpc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY", + "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://orcid.org/0000-0003-4333-1857", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tuan Amith" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "muamith@utmb.edu" - } - }, - { - "@id": "https://orcid.org/0000-0002-9316-2919", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Leszek Vincent" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Leszek@missouri.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/orphanet.ordo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).", + "@id": "https://registry.identifiers.org/registry/minid.test", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Orphanet Rare Disease Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ORDO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo" - }, - { - "@id": "https://registry.identifiers.org/registry/orphanet.ordo" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO" - }, - { - "@id": "http://aber-owl.net/ontology/ordo" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pbbnwa" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "health science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/ols/ontologies/ordo" - }, - "https://bioregistry.io/schema/#0000005": "C023", - "https://bioregistry.io/schema/#0000006": "http://www.orpha.net/ORDO/Orphanet_$1", - "https://bioregistry.io/schema/#0000008": "^C?\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.orphadata.org/data/ORDO/ordo_orphanet.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4308-6337" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ordo" - }, - "https://bioregistry.io/schema/#0000024": "http://www.orpha.net/ORDO/Orphanet_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.orpha.net/ORDO/Orphanet_C023" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "orphanet.ordo" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/snap", + "@id": "https://bioregistry.io/registry/pfam.clan", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.", + "http://purl.org/dc/terms/description": "Higher order grouping of Pfam families", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Snapshot" + "@value": "Pfam Clans" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/snap" + "@id": "http://edamontology.org/data_2758" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "protein" - }, - { - "@value": "interaction" - }, - { - "@value": "pathway" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf" + "@id": "https://pfam.xfam.org" }, - "https://bioregistry.io/schema/#0000005": "Quality", - "https://bioregistry.io/schema/#0000006": "http://www.ifomis.org/bfo/1.1/snap#$1", + "https://bioregistry.io/schema/#0000005": "CL0192", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/set/pfam/$1", + "https://bioregistry.io/schema/#0000008": "^CL\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ifomis.org/bfo/1.1/snap#", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/set/pfam/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ifomis.org/bfo/1.1/snap#Quality" + "@id": "https://www.ebi.ac.uk/interpro/set/pfam/CL0192" }, "https://bioregistry.io/schema/#0000029": { - "@value": "snap" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "pfam.clan" } }, { - "@id": "https://bioregistry.io/registry/taxrank", + "@id": "https://bioregistry.io/registry/mmusdv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)", + "http://purl.org/dc/terms/description": "Life cycle stages for Mus Musculus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/phenoscape/taxrank" + "@id": "https://github.com/obophenotype/developmental-stage-ontologies" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Taxonomic rank vocabulary" + "@value": "Mouse Developmental Stages" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/taxrank" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv" }, { - "@id": "https://fairsharing.org/FAIRsharing.p1sejz" + "@id": "http://www.ontobee.org/ontology/MmusDv" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK" + "@id": "https://www.obofoundry.org/ontology/mmusdv" }, { - "@id": "https://registry.bio2kg.org/resource/taxrank" + "@id": "http://aber-owl.net/ontology/MMUSDV" }, { - "@id": "http://www.ontobee.org/ontology/TAXRANK" + "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV" }, { - "@id": "http://aber-owl.net/ontology/TAXRANK" + "@id": "https://fairsharing.org/FAIRsharing.zchb68" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "anatomy" }, { - "@value": "taxonomy" + "@value": "obo" }, { - "@value": "obo" + "@value": "embryology" }, { "@value": "ontology" + }, + { + "@value": "developmental biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/phenoscape/taxrank" + "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv" }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAXRANK_$1", + "https://bioregistry.io/schema/#0000005": "0000066", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MmusDv_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/taxrank.owl" + "@id": "http://purl.obolibrary.org/obo/mmusdv.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8688-6599" + "@id": "https://orcid.org/0000-0002-9415-5104" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAXRANK_", + "https://bioregistry.io/schema/#0000023": { + "@value": "MmusDv" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MmusDv_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/TAXRANK_0000001" + "@id": "http://purl.obolibrary.org/obo/MmusDv_0000066" }, "https://bioregistry.io/schema/#0000029": { - "@value": "taxrank" + "@value": "mmusdv" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat", + "@id": "http://aber-owl.net/ontology/TO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/sitex", + "@id": "https://bioportal.bioontology.org/ontologies/VARIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010197", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/fbol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.", + "http://purl.org/dc/terms/description": "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SitEx" + "@value": "International Fungal Working Group Fungal Barcoding." }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/sitex" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5mr9c5" - }, - { - "@id": "https://registry.identifiers.org/registry/sitex" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "sequence" - }, - { - "@value": "eukaryotic" + "@id": "https://registry.identifiers.org/registry/fbol" }, { - "@value": "domain" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL" }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www-bionet.sscc.ru/sitex/" + "@id": "http://www.fungalbarcoding.org/" }, - "https://bioregistry.io/schema/#0000005": "1000", - "https://bioregistry.io/schema/#0000006": "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1", + "https://bioregistry.io/schema/#0000005": "2224", + "https://bioregistry.io/schema/#0000006": "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www-bionet.sscc.ru/sitex/index.php?siteid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www-bionet.sscc.ru/sitex/index.php?siteid=1000" - }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/fbol:", "https://bioregistry.io/schema/#0000029": { - "@value": "sitex" - } - }, - { - "@id": "http://www.ontobee.org/ontology/APO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "fbol" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000141", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://orcid.org/0000-0002-7532-1269", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nicholas Furnham" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nickf@ebi.ac.uk" } }, { - "@id": "http://www.ontobee.org/ontology/DOID", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100000039", + "@id": "https://www.re3data.org/repository/r3d100013316", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/doid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/TRANS", + "@id": "http://aber-owl.net/ontology/RXNORM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/htn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/oarcs", + "@id": "https://www.uniprot.org/database/DB-0143", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.bio2kg.org/resource/noncode", + "@id": "https://www.re3data.org/repository/r3d100012078", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB", + "@id": "https://fairsharing.org/FAIRsharing.rj3kj5", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed", + "@id": "https://registry.identifiers.org/registry/aphidbase.transcript", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://orcid.org/0000-0002-9673-1283", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yuki Yamagata" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "yuki.yamagata@riken.jp" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.re3data.org/repository/r3d100012193", + "@id": "https://registry.identifiers.org/registry/panther.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100011280", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/xmetdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Metabolites in the Xenobiotics Metabolism Database.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Xenobiotics Metabolism Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://xmetdb.org" - }, - "https://bioregistry.io/schema/#0000005": "171", - "https://bioregistry.io/schema/#0000006": "http://www.xmetdb.org/xmetdb/protocol/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://www.xmetdb.org/xmetdb/protocol/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.xmetdb.org/xmetdb/protocol/171" + "@id": "https://bioregistry.io/metaregistry/go", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A database-specific registry supporting curation in the Gene Ontology" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "xmetdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y1zyaq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/NGBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/BIRNLEX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/aism", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/foaf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/phipo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology of species-neutral phenotypes observed in pathogen-host interactions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PHI-base/phipo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pathogen Host Interaction Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioportal.bioontology.org/ontologies/PHIPO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC" }, { - "@id": "https://www.obofoundry.org/ontology/phipo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI" }, { - "@id": "http://www.ontobee.org/ontology/PHIPO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB" }, { - "@id": "http://aber-owl.net/ontology/PHIPO" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/PHI-base/phipo" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PHIPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/phipo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/pato" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8941-3984" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PHIPO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PHIPO_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phipo" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/odam", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-6450-7041", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dan Brickley" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "danbri@w3.org" - } - }, - { - "@id": "https://bioregistry.io/registry/dhba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the developing human brain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Developing Human Brain Atlas" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.brainspan.org/" - }, - "https://bioregistry.io/schema/#0000005": "10153", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/dhba/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/dhba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/dhba/10153" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dhba" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010375", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FBcv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://orcid.org/0000-0001-8034-7685", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stephen Fisher" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "safisher@upenn.edu" - } - }, - { - "@id": "http://www.ontobee.org/ontology/EMAPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/stitch", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/registry/tair.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER" }, { - "@id": "https://bioregistry.io/registry/tair" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TAIR Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase" + }, { - "@id": "https://registry.bio2kg.org/resource/tair.gene" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PR" }, { - "@id": "https://registry.identifiers.org/registry/tair.gene" + "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MA" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://arabidopsis.org/index.jsp" - }, - "https://bioregistry.io/schema/#0000005": "2200934", - "https://bioregistry.io/schema/#0000006": "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://arabidopsis.org/servlets/TairObject?accession=Gene:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://arabidopsis.org/servlets/TairObject?accession=Gene:2200934" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tair.gene" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4g5qcw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/obi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obi-ontology/obi" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Biomedical Investigations" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway" + }, { - "@id": "http://aber-owl.net/ontology/OBI" + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster" }, { - "@id": "https://fairsharing.org/FAIRsharing.284e1z" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_gi" }, { - "@id": "https://www.obofoundry.org/ontology/obi" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO" }, { - "@id": "https://registry.identifiers.org/registry/obi" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBI" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBI" + "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI" + "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID" }, { - "@id": "https://registry.bio2kg.org/resource/obi" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia" }, { - "@id": "http://www.ontobee.org/ontology/OBI" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/PO" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN" }, { - "@value": "functional genomics" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://obi-ontology.org" - }, - "https://bioregistry.io/schema/#0000005": "0400109", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/obi.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/RO" + }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase" }, { - "@id": "https://bioregistry.io/registry/one" + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt" }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD" }, { - "@id": "https://bioregistry.io/registry/labo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt" }, { - "@id": "https://bioregistry.io/registry/proco" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA" }, { - "@id": "https://bioregistry.io/registry/maxo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD" }, { - "@id": "https://bioregistry.io/registry/hso" + "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular" }, { - "@id": "https://bioregistry.io/registry/ons" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EC" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/FB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TC" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-SubCell" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Rfam" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RefSeq" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_PROTEIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO_REF" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SEED" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CL" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoCyc" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8457-6693" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Ontology Registry" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBI_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OBI_0400109" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "http://geneontology.org/" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "obi" + "https://bioregistry.io/schema/#0000005": { + "@value": "CHEBI" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" } }, { - "@id": "https://www.obofoundry.org/ontology/fma", + "@id": "http://edamontology.org/data_1173", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.identifiers.org/registry/dlxb", + "@id": "https://www.obofoundry.org/ontology/plo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/schema/#0000022", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The main contact person for a registry" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000002" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has responsible" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000020" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO", + "@id": "https://bioregistry.io/metaregistry/biocontext/CMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BTO", + "@id": "http://aber-owl.net/ontology/FRAPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.uniprot.org/database/DB-0226", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://orcid.org/0000-0003-4028-811X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Josh Moore" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "j.a.moore@dundee.ac.uk" } }, { - "@id": "https://bartoc.org/en/node/16", + "@id": "http://www.wikidata.org/entity/P8656", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO", + "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/nsrrc", + "@id": "https://bioregistry.io/registry/grin", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]", + "http://purl.org/dc/terms/description": "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Swine Resource and Research Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC" + "@value": "Germplasm Resources Information Network" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "fibroblast" - }, - { - "@value": "fetal fibroblast" - }, - { - "@value": "fetus" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "pig" + "@id": "https://registry.bio2kg.org/resource/grin" }, { - "@value": "cryopreservation" - }, + "@id": "https://fairsharing.org/FAIRsharing.3axym7" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ars-grin.gov/" + }, + "https://bioregistry.io/schema/#0000005": "159787", + "https://bioregistry.io/schema/#0000006": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=159787" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "grin" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/aeo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anatomical Entity Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genome" + "@id": "https://fairsharing.org/FAIRsharing.93ee19" }, { - "@value": "genetically modified pig" + "@id": "https://www.obofoundry.org/ontology/aeo" }, { - "@value": "health monitoring" + "@id": "http://aber-owl.net/ontology/AEO" }, { - "@value": "live animal" + "@id": "https://bartoc.org/en/node/181" }, { - "@value": "biomaterial manufacture" + "@id": "http://www.ontobee.org/ontology/AEO" }, { - "@value": "tissue" + "@id": "https://bioregistry.io/metaregistry/biocontext/AEO" }, { - "@value": "reproduction" + "@id": "https://bioportal.bioontology.org/ontologies/AEO" }, { - "@value": "genotyping" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "consulting" + "@value": "ontology" }, { - "@value": "breeding" + "@value": "life science" }, { - "@value": "genetics" + "@value": "anatomy" }, { - "@value": "phenotyping" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nsrrc.missouri.edu/" + "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology/" }, - "https://bioregistry.io/schema/#0000005": "0005", - "https://bioregistry.io/schema/#0000006": "https://nsrrc.missouri.edu/nsrrc$1info/", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/nsrrc:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://nsrrc.missouri.edu/nsrrc0005info/" + "https://bioregistry.io/schema/#0000005": "0001017", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/aeo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/ehdaa2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Neabecefb91604f08872b21ea41a4ec75" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "AEO_RETIRED" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AEO_", "https://bioregistry.io/schema/#0000029": { - "@value": "nsrrc" + "@value": "aeo" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb", + "@id": "_:Neabecefb91604f08872b21ea41a4ec75", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jonathan Bard" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "J.Bard@ed.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/pdb.ligand", + "@id": "http://agroportal.lirmm.fr/ontologies/PO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/arachnoserver", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG", + "@id": "http://aber-owl.net/ontology/PDRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/pypi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Python Package Index (PyPI) is a repository for Python packages.", + "@id": "http://www.wikidata.org/entity/P1925", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PyPI" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/pypi" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.python.org/psf/" - }, - "https://bioregistry.io/schema/#0000005": "numpy", - "https://bioregistry.io/schema/#0000006": "https://pypi.org/project/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z_][a-zA-Z0-9\\-_]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pypi.org/project/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pypi.org/project/numpy" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pypi" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo", + "@id": "https://registry.identifiers.org/registry/mge", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0002-0173-9080", + "@id": "https://orcid.org/0000-0002-8841-5870", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Robert Court" + "@value": "Willy Wong" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "r.court@ed.ac.uk" + "@value": "wawong@gmail.com" } }, { - "@id": "https://registry.identifiers.org/registry/nmr", + "@id": "https://registry.identifiers.org/registry/hmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/1237", + "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/yeastract", + "@id": "https://bioregistry.io/registry/hagr.gendr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references.", + "http://purl.org/dc/terms/description": "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Searching for Transcriptional Regulators and Consensus Tracking" + "@value": "The Dietary Restriction Gene Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/gendr" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/yeastract" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mphj4z" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "small molecule" - }, - { - "@value": "life science" + "@value": "longevity" }, { - "@value": "dna" + "@value": "genes" }, { - "@value": "regulation" + "@value": "dietary restriction" }, { - "@value": "gene" + "@value": "aging" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.yeastract.com" + "@id": "http://genomics.senescence.info/diet/" }, - "https://bioregistry.io/schema/#0000005": "YBR125c", - "https://bioregistry.io/schema/#0000006": "http://www.yeastract.com/view.php?existing=locus&orfname=$1", + "https://bioregistry.io/schema/#0000005": "2", + "https://bioregistry.io/schema/#0000006": "http://genomics.senescence.info/diet/details.php?id=$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.yeastract.com/view.php?existing=locus&orfname=", + "https://bioregistry.io/schema/#0000024": "http://genomics.senescence.info/diet/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.yeastract.com/view.php?existing=locus&orfname=YBR125c" + "@id": "http://genomics.senescence.info/diet/details.php?id=2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "yeastract" + "@value": "hagr.gendr" } }, { - "@id": "https://www.obofoundry.org/ontology/fbbi", + "@id": "http://www.ontobee.org/ontology/OGSF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/biominder", + "@id": "https://fairsharing.org/FAIRsharing.haxp7g", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/hinv.locus", + "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/foodon", + "@id": "http://aber-owl.net/ontology/skos", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.uniprot.org/database/DB-0110", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/treefam", + "@id": "https://registry.identifiers.org/registry/cas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINT", + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase", + "@id": "https://bioregistry.io/registry/irct", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Iranian Registry of Clinical Trials" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://en.irct.ir/" + }, + "https://bioregistry.io/schema/#0000005": "IRCT20080904001199N7", + "https://bioregistry.io/schema/#0000008": "^IRCT\\d+N\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "irct" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb", + "@id": "https://bioportal.bioontology.org/ontologies/RXNORM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.re3data.org/repository/r3d100014113", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/chembank", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG).", + "@id": "https://bioregistry.io/registry/pgs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChemBank" + "@value": "Polygenic Score Catalog" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank" - }, - { - "@id": "https://registry.bio2kg.org/resource/chembank" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemical" - }, - { - "@value": "metabolite" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://chembank.broad.harvard.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/pgs" }, - "https://bioregistry.io/schema/#0000005": "1000000", - "https://bioregistry.io/schema/#0000006": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pgscatalog.org" }, - "https://bioregistry.io/schema/#0000024": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=", + "https://bioregistry.io/schema/#0000005": "PGS000018", + "https://bioregistry.io/schema/#0000006": "https://www.pgscatalog.org/pgs/$1", + "https://bioregistry.io/schema/#0000008": "^PGS[0-9]{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.pgscatalog.org/pgs/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=1000000" + "@id": "https://www.pgscatalog.org/pgs/PGS000018" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chembank" + "@value": "pgs" } }, { - "@id": "https://www.obofoundry.org/ontology/iceo", + "@id": "https://www.obofoundry.org/ontology/propreo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo", + "@id": "https://registry.identifiers.org/registry/mimodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY", + "@id": "https://bioregistry.io/registry/pennsieve", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pennsieve" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ps" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://discover.pennsieve.io" + }, + "https://bioregistry.io/schema/#0000005": "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a", + "https://bioregistry.io/schema/#0000006": "https://discover.pennsieve.io/package/$1", + "https://bioregistry.io/schema/#0000008": "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://discover.pennsieve.io/package/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://discover.pennsieve.io/package/N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pennsieve" } }, { - "@id": "https://registry.bio2kg.org/resource/cattleqtldb", + "@id": "https://registry.identifiers.org/registry/wikipathways", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/rna_sstrand", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/qb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI).", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "UKGovLD/publishing-statistical-data" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The data cube vocabulary" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/vocab-data-cube" - }, - "https://bioregistry.io/schema/#0000005": "Observation", - "https://bioregistry.io/schema/#0000006": "http://purl.org/linked-data/cube#$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9950-5209" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/linked-data/cube#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/linked-data/cube#Observation" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "qb" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://orcid.org/0000-0002-8786-1756", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wes Schafer" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wes_schafer@merck.com" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-3469-4923", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Janna Hastings" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "janna.hastings@gmail.com" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/GEO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/inchi", + "@id": "https://registry.identifiers.org/registry/runbiosimulations", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/509", + "@id": "https://www.obofoundry.org/ontology/bfo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/pharmgkb.gene", + "@id": "https://bioregistry.io/registry/dgrc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmGKB Gene" + "@value": "Drosophila Genomics Resource Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/pharmgkb.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene" - }, - { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene" - }, - { - "@id": "http://www.wikidata.org/entity/P7001" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE" - }, - { - "@id": "https://www.uniprot.org/database/DB-0074" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "pharmacogenomics" - }, - { - "@value": "ontology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pharmgkb.org/" + "@id": "https://dgrc.bio.indiana.edu/cells/Catalog" }, - "https://bioregistry.io/schema/#0000005": "PA131", - "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^PA\\w+$", + "https://bioregistry.io/schema/#0000005": "215", + "https://bioregistry.io/schema/#0000006": "https://dgrc.bio.indiana.edu/product/View?product=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/gene/", + "https://bioregistry.io/schema/#0000024": "https://dgrc.bio.indiana.edu/product/View?product=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pharmgkb.org/gene/PA131" + "@id": "https://dgrc.bio.indiana.edu/product/View?product=215" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pharmgkb.gene" + "@value": "dgrc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7c683b", + "@id": "https://www.re3data.org/repository/r3d100011033", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/brenda.ligand", + "@id": "https://bioregistry.io/registry/s_mart_db", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information for ligands in the BRENDA database.", + "http://purl.org/dc/terms/description": "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BRENDA Ligand" + "@value": "The S/MAR transaction DataBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/s_mart_db" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemistry" - }, - { - "@value": "structrual bioinformatics" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.brenda-enzymes.de/ligand.php" + "@id": "http://smartdb.bioinf.med.uni-goettingen.de/" }, - "https://bioregistry.io/schema/#0000005": "278", - "https://bioregistry.io/schema/#0000006": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "SM0000020", + "https://bioregistry.io/schema/#0000006": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=278" + "@id": "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?SM0000020" }, "https://bioregistry.io/schema/#0000029": { - "@value": "brenda.ligand" + "@value": "s_mart_db" } }, { - "@id": "https://bioregistry.io/registry/goeco", + "@id": "https://bioregistry.io/registry/oci", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported.", + "http://purl.org/dc/terms/description": "Each OCI (Open Citation Identifier) has a simple structure: oci:-, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first is the identifier for the citing bibliographic resource, while the second is the identifier for the cited bibliographic resource.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GO Evidence Code" + "@value": "Open Citation Identifier" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/oci" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OCI" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://geneontology.org/docs/guide-go-evidence-codes/" + "@id": "http://opencitations.net" }, - "https://bioregistry.io/schema/#0000005": "IPI", + "https://bioregistry.io/schema/#0000005": "01027931310-01022252312", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/oci/$1", + "https://bioregistry.io/schema/#0000008": "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "goeco" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://orcid.org/0000-0002-0045-7698", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre-Alain Binz" + "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/oci/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/oc/oci/01027931310-01022252312" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pierre-alain.binz@chuv.ch" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P7001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/hovergen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/pco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "https://bioregistry.io/schema/#0000029": { + "@value": "oci" } }, { - "@id": "https://bioregistry.io/registry/hao", + "@id": "https://bioregistry.io/registry/co_334", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)", + "http://purl.org/dc/terms/description": "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/hymao/hao" + "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hymenoptera Anatomy Ontology" + "@value": "Cassava ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.kj3m5n" - }, - { - "@id": "https://www.obofoundry.org/ontology/hao" - }, - { - "@id": "http://aber-owl.net/ontology/HAO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAO" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_334" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HAO" + "@id": "https://cropontology.org/ontology/CO_334" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao" + "@id": "https://fairsharing.org/FAIRsharing.v06c4q" }, { - "@id": "http://www.ontobee.org/ontology/HAO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "agriculture" }, { - "@value": "ontology" + "@value": "botany" }, { - "@value": "anatomy" + "@value": "nutritional science" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://hymao.org" + "@id": "https://cropontology.org/ontology/CO_334/Cassava" }, - "https://bioregistry.io/schema/#0000005": "0000187", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HAO_$1", + "https://bioregistry.io/schema/#0000005": "0000070", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_334:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hao.owl" + "@id": "https://cropontology.org/ontology/CO_334/Cassava/owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5640-5491" + "@id": "_:Nf81ca7c123934d1fad4db7af794f82eb" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HAO_", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_334:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HAO_0000187" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hao" - } - }, - { - "@id": "https://bioregistry.io/registry/vuid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Veterans Health Administration (VHA) unique identifier" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.va.gov/health" + "@id": "https://cropontology.org/rdf/CO_334:0000070" }, - "https://bioregistry.io/schema/#0000005": "4007166", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { - "@value": "vuid" + "@value": "co_334" } }, { - "@id": "https://bioregistry.io/registry/hdl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "_:Nf81ca7c123934d1fad4db7af794f82eb", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Handle" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.0b7e54" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.handle.net/" - }, - "https://bioregistry.io/schema/#0000005": "2381/12775", - "https://bioregistry.io/schema/#0000006": "http://hdl.handle.net/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+/.+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "handle" - }, - "https://bioregistry.io/schema/#0000024": "http://hdl.handle.net/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://hdl.handle.net/2381/12775" + "@value": "Crop Ontology Helpdesk" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hdl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/civic.tid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://registry.identifiers.org/registry/licebase", + "@id": "https://registry.identifiers.org/registry/treefam", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-5809-9523", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Darren Natale" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dan5@georgetown.edu" } }, { - "@id": "https://www.obofoundry.org/ontology/scdo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit", + "@id": "https://registry.bio2kg.org/resource/norine", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/trichdb", + "@id": "https://bioregistry.io/registry/imgt.hla", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TrichDB" + "@value": "IMGT/HLA human major histocompatibility complex sequence database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.pv0ezt" + "@id": "https://registry.identifiers.org/registry/imgt.hla" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb" + "@id": "http://edamontology.org/data_2773" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA" }, { - "@id": "https://www.re3data.org/repository/r3d100012461" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA" }, { - "@id": "https://registry.identifiers.org/registry/trichdb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010804" + }, + { + "@id": "https://registry.bio2kg.org/resource/imgthla" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.e28v7g" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genomics" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://trichdb.org/trichdb/" - }, - "https://bioregistry.io/schema/#0000005": "TVAG_386080", - "https://bioregistry.io/schema/#0000006": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4446-6200" - }, - "https://bioregistry.io/schema/#0000024": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TVAG_386080" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "trichdb" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012850", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/nembase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nematode & Neglected Genomics" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/nembase" - }, "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "immunogenetics" + }, { "@value": "dna" }, + { + "@value": "immunology" + }, + { + "@value": "biomedical science" + }, { "@value": "protein" }, @@ -74476,3848 +66246,3716 @@ } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nematodes.org" - }, - "https://bioregistry.io/schema/#0000005": "NBC00001", - "https://bioregistry.io/schema/#0000006": "http://www.nematodes.org/nembase4/cluster.php?cluster=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://www.ebi.ac.uk/imgt/hla/allele.html" }, - "https://bioregistry.io/schema/#0000024": "http://www.nematodes.org/nembase4/cluster.php?cluster=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.nematodes.org/nembase4/cluster.php?cluster=NBC00001" + "https://bioregistry.io/schema/#0000005": "A*01:01:01:01", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9*:]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2855-4120" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nembase" - } - }, - { - "@id": "https://bioregistry.io/registry/epcc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Collection of European paediatric cardiac coding files", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "https://bioregistry.io/schema/#0000023": { + "@value": "IPD-IMGT/HLA" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Paediatric Cardiac Codes" + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.aepc.org/european-paediatric-cardiac-coding" + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?A*01:01:01:01" }, - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { - "@value": "epcc" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/aaindex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "http://aber-owl.net/ontology/UO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/MIRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000140", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "http://aber-owl.net/ontology/GRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "imgt.hla" } }, { - "@id": "https://bioregistry.io/registry/msio", + "@id": "https://bioregistry.io/registry/ohd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.", + "http://purl.org/dc/terms/description": "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" + "@id": "https://github.com/oral-health-and-disease-ontologies/ohd-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolomics Standards Initiative Ontology" + "@value": "Oral Health and Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.4c7f91" + "@id": "http://www.ontobee.org/ontology/OHD" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd" + }, + { + "@id": "https://www.obofoundry.org/ontology/ohd" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OHD" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bg7bb6" + }, + { + "@id": "http://aber-owl.net/ontology/OHD" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHD" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "metabolomics" + "@value": "dentistry" + }, + { + "@value": "medicine" + }, + { + "@value": "oral surgery" }, { "@value": "ontology" }, { - "@value": "omics" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/MSI-Metabolomics-Standards-Initiative/MSIO" + "@id": "https://purl.obolibrary.org/obo/ohd/home" }, - "https://bioregistry.io/schema/#0000005": "0000111", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MSIO_$1", + "https://bioregistry.io/schema/#0000005": "0000006", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHD_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/MSI-Metabolomics-Standards-Initiative/MSIO/master/releases/latest_release/MSIO-merged-reasoned.owl" + "@id": "http://purl.obolibrary.org/obo/ohd.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9853-5668" + "@id": "https://orcid.org/0000-0001-9625-1899" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MSIO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHD_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MSIO_0000111" + "@id": "http://purl.obolibrary.org/obo/OHD_0000006" }, "https://bioregistry.io/schema/#0000029": { - "@value": "msio" + "@value": "ohd" } }, { - "@id": "https://bioregistry.io/registry/oma.grp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-0948-4537", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OMA Group" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/oma.grp" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://omabrowser.org/cgi-bin/gateway.pl" - }, - "https://bioregistry.io/schema/#0000005": "LCSCCPN", - "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=LCSCCPN" + "@value": "Frederique Lisacek" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oma.grp" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FIDEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013715", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1rj558", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "frederique.lisacek@isb-sib.ch" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7zffgc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0003-0612-0970", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gwen Frishkoff" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gfrishkoff@gsu.edu" } }, { - "@id": "https://bioregistry.io/registry/cio", + "@id": "https://bioregistry.io/registry/cvdo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to capture confidence information about annotations.", + "http://purl.org/dc/terms/description": "An ontology to describe entities related to cardiovascular diseases", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BgeeDB/confidence-information-ontology" + "@id": "https://github.com/OpenLHS/CVDO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Confidence Information Ontology" + "@value": "Cardiovascular Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/CIO" + "@id": "https://bioportal.bioontology.org/ontologies/CVDO" }, { - "@id": "https://fairsharing.org/FAIRsharing.e3t0yw" + "@id": "https://www.obofoundry.org/ontology/cvdo" }, { - "@id": "http://aber-owl.net/ontology/CIO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio" + "@id": "http://www.ontobee.org/ontology/CVDO" }, { - "@id": "https://www.obofoundry.org/ontology/cio" + "@id": "https://fairsharing.org/FAIRsharing.2basyz" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CIO" + "@id": "http://aber-owl.net/ontology/CVDO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CIO" + "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "obo" }, { - "@value": "biology" + "@value": "cardiology" }, { - "@value": "obo" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/BgeeDB/confidence-information-ontology" + "@id": "https://github.com/OpenLHS/CVDO" }, - "https://bioregistry.io/schema/#0000005": "0000040", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CIO_$1", + "https://bioregistry.io/schema/#0000005": "0000546", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CVDO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cio.owl" + "@id": "http://purl.obolibrary.org/obo/cvdo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" + "@id": "https://orcid.org/0000-0002-3336-2476" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CIO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CVDO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CIO_0000040" + "@id": "http://purl.obolibrary.org/obo/CVDO_0000546" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cio" + "@value": "cvdo" } }, { - "@id": "https://bioregistry.io/registry/eugenes", + "@id": "https://registry.bio2kg.org/resource/ensembl.fungi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/issn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information.", + "http://purl.org/dc/terms/description": "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eukaryotic Genes" + "@value": "International Standard Serial Number" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/eugenes" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN" }, { - "@id": "https://fairsharing.org/FAIRsharing.7fc5y6" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn" }, { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/issn" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://eugenes.org/" + "@id": "https://portal.issn.org" }, - "https://bioregistry.io/schema/#0000005": "MGgn0008978", - "https://bioregistry.io/schema/#0000006": "http://eugenes.org:7072/.bin/fbidq.html?$1", + "https://bioregistry.io/schema/#0000005": "0745-4570", + "https://bioregistry.io/schema/#0000006": "https://portal.issn.org/resource/ISSN/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d{3}[\\dX]$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6646-7274" + "https://bioregistry.io/schema/#0000024": "https://portal.issn.org/resource/ISSN/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://portal.issn.org/resource/ISSN/0745-4570" }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000029": { + "@value": "issn" + } + }, + { + "@id": "https://bioregistry.io/registry/mmsl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "https://bioregistry.io/schema/#0000024": "http://eugenes.org:7072/.bin/fbidq.html?", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://eugenes.org:7072/.bin/fbidq.html?MGgn0008978" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Multum MediSource Lexicon" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html" + }, + "https://bioregistry.io/schema/#0000005": "3355", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "MMSL_CODE" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eugenes" + "@value": "mmsl" } }, { - "@id": "https://bioregistry.io/registry/virsirna", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/arrayexpress.platform", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.", + "http://purl.org/dc/terms/description": "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VIRsiRNA" + "@value": "ArrayExpress Platform" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA" + "@id": "https://registry.identifiers.org/registry/arrayexpress.platform" }, { - "@id": "https://registry.identifiers.org/registry/virsirna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://crdd.osdd.net/servers/virsirnadb" + "@id": "https://www.ebi.ac.uk/arrayexpress/" }, - "https://bioregistry.io/schema/#0000005": "virsi1909", - "https://bioregistry.io/schema/#0000006": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1", - "https://bioregistry.io/schema/#0000008": "^virsi\\d+$", + "https://bioregistry.io/schema/#0000005": "A-GEOD-50", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/arrayexpress/arrays/$1", + "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/arrayexpress/arrays/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=virsi1909" + "@id": "https://www.ebi.ac.uk/arrayexpress/arrays/A-GEOD-50" }, "https://bioregistry.io/schema/#0000029": { - "@value": "virsirna" + "@value": "arrayexpress.platform" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE", + "@id": "https://registry.bio2kg.org/resource/pubchem.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/OHMI", + "@id": "https://orcid.org/0000-0001-5628-4194", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Brodbelt" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "DBrodbelt@RVC.AC.UK" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SASAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.obofoundry.org/ontology/mcro", + "@id": "https://bioportal.bioontology.org/ontologies/IOBC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/pigqtldb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/qtldb" - } - ], + "@id": "https://registry.identifiers.org/registry/genedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/addgene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0001-9842-9718", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome Pig QTL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB" - }, - { - "@id": "https://registry.bio2kg.org/resource/pigqtldb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb" - }, - { - "@id": "https://registry.identifiers.org/registry/pigqtldb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org/QTLdb" - }, - "https://bioregistry.io/schema/#0000005": "14", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:14" + "@value": "Stian Soiland-Reyes" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pigqtldb" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "stian@soiland-reyes.com" } }, { - "@id": "https://bioregistry.io/registry/eol", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/NOMEN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/goa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/BAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/datanator.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/eggnog", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems.", + "http://purl.org/dc/terms/description": "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Environment Ontology for Livestock" + "@value": "eggNOG" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100011663" + "@id": "https://www.uniprot.org/database/DB-0152" }, { - "@id": "http://aber-owl.net/ontology/EOL" + "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol" + "@id": "https://fairsharing.org/FAIRsharing.j1wj7d" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EOL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog" }, { - "@id": "https://fairsharing.org/FAIRsharing.w7bw2y" + "@id": "https://registry.bio2kg.org/resource/eggnog" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EOL" + "@id": "https://registry.identifiers.org/registry/eggnog" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" - }, - { - "@value": "animal husbandry" - }, - { - "@value": "environmental science" + "@value": "gene" }, { - "@value": "agriculture" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.atol-ontology.com" - }, - "https://bioregistry.io/schema/#0000005": "0001927", - "https://bioregistry.io/schema/#0000006": "http://purl.org/obo/owlEOL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=eol.owl" + "@id": "http://eggnog.embl.de/version_3.0/" }, + "https://bioregistry.io/schema/#0000005": "veNOG12876", + "https://bioregistry.io/schema/#0000006": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8310-5195" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/obo/owlEOL_", + "https://bioregistry.io/schema/#0000024": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/obo/owlEOL_0001927" + "@id": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=veNOG12876" }, "https://bioregistry.io/schema/#0000029": { - "@value": "eol" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "eggnog" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB", + "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME", + "@id": "https://registry.identifiers.org/registry/massive", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/iuphar.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IUPHAR family" + "@id": "https://bioregistry.io/metaregistry/aberowl", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.bio2kg.org/resource/iuphar.family" + "@id": "http://aber-owl.net/ontology/RXNO" }, { - "@id": "https://registry.identifiers.org/registry/iuphar.family" + "@id": "http://aber-owl.net/ontology/PCO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family" + "@id": "http://aber-owl.net/ontology/CMPO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.guidetopharmacology.org/" - }, - "https://bioregistry.io/schema/#0000005": "78", - "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "IUPHARfam" - }, - "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=78" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iuphar.family" - } - }, - { - "@id": "https://bioregistry.io/registry/biomodels.db", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioModels Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db" + "@id": "http://aber-owl.net/ontology/SWO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB" + "@id": "http://aber-owl.net/ontology/XLMOD" }, { - "@id": "https://registry.bio2kg.org/resource/biomodels" + "@id": "http://aber-owl.net/ontology/EHDAA2" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD" + "@id": "http://aber-owl.net/ontology/XAO" }, { - "@id": "https://registry.identifiers.org/registry/biomodels.db" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "model" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/biomodels/" - }, - "https://bioregistry.io/schema/#0000005": "BIOMD0000000048", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biomodels/$1", - "https://bioregistry.io/schema/#0000008": "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "BIOMD" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biomodels/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/biomodels/BIOMD0000000048" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biomodels.db" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/lipidmaps", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4355", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.yk38tw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/DPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/civic.did", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.arba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Association-Rule-Based Annotator" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/arba" - }, - "https://bioregistry.io/schema/#0000005": "ARBA00000001", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/arba/$1", - "https://bioregistry.io/schema/#0000008": "^ARBA\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "arba" - }, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/arba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/arba/ARBA00000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.arba" - } - }, - { - "@id": "http://aber-owl.net/ontology/MI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/uo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology of standardized units", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bio-ontology-research-group/unit-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Units of measurement ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo" + "@id": "http://aber-owl.net/ontology/CMO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UO" + "@id": "http://aber-owl.net/ontology/MO" }, { - "@id": "http://www.ontobee.org/ontology/UO" + "@id": "http://aber-owl.net/ontology/NANDO" }, { - "@id": "https://registry.bio2kg.org/resource/uo" + "@id": "http://aber-owl.net/ontology/MCRO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo" + "@id": "http://aber-owl.net/ontology/PECO" }, { - "@id": "https://www.obofoundry.org/ontology/uo" + "@id": "http://aber-owl.net/ontology/NOMEN" }, { - "@id": "http://aber-owl.net/ontology/UO" + "@id": "http://aber-owl.net/ontology/AERO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UO" + "@id": "http://aber-owl.net/ontology/CARO" }, { - "@id": "https://registry.identifiers.org/registry/uo" + "@id": "http://aber-owl.net/ontology/RDFS" }, { - "@id": "https://fairsharing.org/FAIRsharing.mjnypw" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/EHDAA" }, { - "@value": "obo" + "@id": "http://aber-owl.net/ontology/SOPHARM" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/EFO" }, { - "@value": "mathematics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/bio-ontology-research-group/unit-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000080", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/uo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "http://aber-owl.net/ontology/SPD" }, { - "@id": "https://bioregistry.io/registry/ms" + "@id": "http://aber-owl.net/ontology/GENEPIO" }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "http://aber-owl.net/ontology/FAO" }, { - "@id": "https://bioregistry.io/registry/agro" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2061-091X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/UO_0000080" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uo" - } - }, - { - "@id": "https://bioregistry.io/registry/vipr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VirusBRC" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Virus Pathogen Resource" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.2qx8n8" + "@id": "http://aber-owl.net/ontology/CDNO" }, { - "@id": "https://registry.identifiers.org/registry/vipr" + "@id": "http://aber-owl.net/ontology/RS" }, { - "@id": "https://www.re3data.org/repository/r3d100011931" + "@id": "http://aber-owl.net/ontology/ECAO" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR" + "@id": "http://aber-owl.net/ontology/OMIT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr" + "@id": "http://aber-owl.net/ontology/ORTH" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genomics" + "@id": "http://aber-owl.net/ontology/ROLEO" }, { - "@value": "biomedical science" + "@id": "http://aber-owl.net/ontology/INO" }, { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/ECOCORE" }, { - "@value": "proteomics" + "@id": "http://aber-owl.net/ontology/ARO" }, { - "@value": "immunology" + "@id": "http://aber-owl.net/ontology/OGMS" }, { - "@value": "virology" + "@id": "http://aber-owl.net/ontology/PLANP" }, { - "@value": "epidemiology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.viprbrc.org/brc/home.do?decorator=vipr" - }, - "https://bioregistry.io/schema/#0000005": "BeAn 70563", - "https://bioregistry.io/schema/#0000006": "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z 0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1355-892X" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vipr:", - "https://bioregistry.io/schema/#0000029": { - "@value": "vipr" - } - }, - { - "@id": "https://bioregistry.io/registry/flopo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Traits and phenotypes of flowering plants occurring in digitized Floras", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/flora-phenotype-ontology/flopoontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Flora Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.ny9vnm" + "@id": "http://aber-owl.net/ontology/IDODEN" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO" + "@id": "http://aber-owl.net/ontology/VHOG" }, { - "@id": "https://www.obofoundry.org/ontology/flopo" + "@id": "http://aber-owl.net/ontology/BIRNLEX" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FLOPO" + "@id": "http://aber-owl.net/ontology/ITO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo" + "@id": "http://aber-owl.net/ontology/UPHENO" }, { - "@id": "http://www.ontobee.org/ontology/FLOPO" + "@id": "http://aber-owl.net/ontology/NIFCELL" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO" + "@id": "http://aber-owl.net/ontology/GEXO" }, { - "@id": "http://aber-owl.net/ontology/FLOPO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://aber-owl.net/ontology/AEO" + }, { - "@value": "obo" + "@id": "http://aber-owl.net/ontology/MPIO" }, { - "@value": "biodiversity" + "@id": "http://aber-owl.net/ontology/RXNORM" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/OMIABIS" }, { - "@value": "botany" + "@id": "http://aber-owl.net/ontology/ECG" }, { - "@value": "plant anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/flora-phenotype-ontology/flopoontology" - }, - "https://bioregistry.io/schema/#0000005": "0005250", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FLOPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/flopo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8149-5890" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FLOPO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FLOPO_0005250" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "flopo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/resid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c6vhm3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/co_337", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Groundnut ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://aber-owl.net/ontology/AMPHX" + }, { - "@id": "https://fairsharing.org/FAIRsharing.ge8y23" + "@id": "http://aber-owl.net/ontology/COB" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_337" + "@id": "http://aber-owl.net/ontology/VANDF" }, { - "@id": "https://cropontology.org/ontology/CO_337" + "@id": "http://aber-owl.net/ontology/GRO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://aber-owl.net/ontology/HOIP" + }, { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/OMP" }, { - "@value": "agriculture" + "@id": "http://aber-owl.net/ontology/OHMI" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/ECTO" }, { - "@value": "botany" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_337/Groundnut" - }, - "https://bioregistry.io/schema/#0000005": "0000054", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_337:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_337/Groundnut/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0091-7981" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_337:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_337:0000054" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_337" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/grsdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tied", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/aberowl", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "http://aber-owl.net/ontology/HSAPDV" + }, { - "@id": "http://aber-owl.net/ontology/SNOMEDCT" + "@id": "http://aber-owl.net/ontology/PROCO" }, { - "@id": "http://aber-owl.net/ontology/SEPIO" + "@id": "http://aber-owl.net/ontology/ICEO" }, { - "@id": "http://aber-owl.net/ontology/AIO" + "@id": "http://aber-owl.net/ontology/MFMO" }, { - "@id": "http://aber-owl.net/ontology/EMAPA" + "@id": "http://aber-owl.net/ontology/RADLEX" }, { - "@id": "http://aber-owl.net/ontology/SOPHARM" + "@id": "http://aber-owl.net/ontology/PRIDE" }, { - "@id": "http://aber-owl.net/ontology/REX" + "@id": "http://aber-owl.net/ontology/LABO" }, { - "@id": "http://aber-owl.net/ontology/PAV" + "@id": "http://aber-owl.net/ontology/CLO" }, { - "@id": "http://aber-owl.net/ontology/CRO" + "@id": "http://aber-owl.net/ontology/ICD10" }, { - "@id": "http://aber-owl.net/ontology/DERMO" + "@id": "http://aber-owl.net/ontology/SYMP" }, { - "@id": "http://aber-owl.net/ontology/PLANA" + "@id": "http://aber-owl.net/ontology/FOVT" }, { - "@id": "http://aber-owl.net/ontology/COLAO" + "@id": "http://aber-owl.net/ontology/UPA" }, { - "@id": "http://aber-owl.net/ontology/BCGO" + "@id": "http://aber-owl.net/ontology/LEPAO" }, { - "@id": "http://aber-owl.net/ontology/RXNO" + "@id": "http://aber-owl.net/ontology/PROPREO" }, { - "@id": "http://aber-owl.net/ontology/HAO" + "@id": "http://aber-owl.net/ontology/TO" }, { - "@id": "http://aber-owl.net/ontology/VARIO" + "@id": "http://aber-owl.net/ontology/XCO" }, { - "@id": "http://aber-owl.net/ontology/HP_O" + "@id": "http://aber-owl.net/ontology/XL" }, { - "@id": "http://aber-owl.net/ontology/PHENX" + "@id": "http://aber-owl.net/ontology/APO" }, { - "@id": "http://aber-owl.net/ontology/MCO" + "@id": "http://aber-owl.net/ontology/PCL" }, { - "@id": "http://aber-owl.net/ontology/FBBT" + "@id": "http://aber-owl.net/ontology/CRYOEM" }, { - "@id": "http://aber-owl.net/ontology/TAXRANK" + "@id": "http://aber-owl.net/ontology/SAO" }, { - "@id": "http://aber-owl.net/ontology/MMUSDV" + "@id": "http://aber-owl.net/ontology/NEMO" }, { - "@id": "http://aber-owl.net/ontology/OA" + "@id": "http://aber-owl.net/ontology/MIRNAO" }, { - "@id": "http://aber-owl.net/ontology/PDUMDV" + "@id": "http://aber-owl.net/ontology/DERMO" }, { - "@id": "http://aber-owl.net/ontology/PORO" + "@id": "http://aber-owl.net/ontology/LPT" }, { - "@id": "http://aber-owl.net/ontology/IAO" + "@id": "http://aber-owl.net/ontology/HSO" }, { - "@id": "http://aber-owl.net/ontology/OMP" + "@id": "http://aber-owl.net/ontology/IDO-COVID-19" }, { - "@id": "http://aber-owl.net/ontology/EOL" + "@id": "http://aber-owl.net/ontology/SIBO" }, { - "@id": "http://aber-owl.net/ontology/OGI" + "@id": "http://aber-owl.net/ontology/CMF" }, { - "@id": "http://aber-owl.net/ontology/foaf" + "@id": "http://aber-owl.net/ontology/NDFRT" }, { - "@id": "http://aber-owl.net/ontology/NEMO" + "@id": "http://aber-owl.net/ontology/PMR" }, { - "@id": "http://aber-owl.net/ontology/BCO" + "@id": "http://aber-owl.net/ontology/DOID" }, { - "@id": "http://aber-owl.net/ontology/FaBiO" + "@id": "http://aber-owl.net/ontology/ATC" }, { - "@id": "http://aber-owl.net/ontology/TTO" + "@id": "http://aber-owl.net/ontology/ADW" }, { - "@id": "http://aber-owl.net/ontology/MAXO" + "@id": "http://aber-owl.net/ontology/ORNASEQ" }, { - "@id": "http://aber-owl.net/ontology/OMO" + "@id": "http://aber-owl.net/ontology/ZEA" }, { - "@id": "http://aber-owl.net/ontology/NCBITAXON" + "@id": "http://aber-owl.net/ontology/MI" }, { - "@id": "http://aber-owl.net/ontology/PROPREO" + "@id": "http://aber-owl.net/ontology/DDPHENO" }, { - "@id": "http://aber-owl.net/ontology/DATACITE" + "@id": "http://aber-owl.net/ontology/FaBiO" }, { - "@id": "http://aber-owl.net/ontology/BSPO" + "@id": "http://aber-owl.net/ontology/CRO" }, { - "@id": "http://aber-owl.net/ontology/QUDT" + "@id": "http://aber-owl.net/ontology/CHEMROF" }, { - "@id": "http://aber-owl.net/ontology/BFO" + "@id": "http://aber-owl.net/ontology/FMA" }, { - "@id": "http://aber-owl.net/ontology/EHDAA" + "@id": "http://aber-owl.net/ontology/NIFSTD" }, { - "@id": "http://aber-owl.net/ontology/IDODEN" + "@id": "http://aber-owl.net/ontology/REXO" }, { - "@id": "http://aber-owl.net/ontology/MFO" + "@id": "http://aber-owl.net/ontology/MPATH" }, { - "@id": "http://aber-owl.net/ontology/FRAPO" + "@id": "http://aber-owl.net/ontology/MDM" }, { - "@id": "http://aber-owl.net/ontology/OBIB" + "@id": "http://aber-owl.net/ontology/dcelements" }, { - "@id": "http://aber-owl.net/ontology/LPT" + "@id": "http://aber-owl.net/ontology/MMUSDV" }, { - "@id": "http://aber-owl.net/ontology/AEO" + "@id": "http://aber-owl.net/ontology/OBCS" }, { - "@id": "http://aber-owl.net/ontology/CHEMROF" + "@id": "http://aber-owl.net/ontology/OMRSE" }, { - "@id": "http://aber-owl.net/ontology/CRISP" + "@id": "http://aber-owl.net/ontology/UO" }, { - "@id": "http://aber-owl.net/ontology/ICEO" + "@id": "http://aber-owl.net/ontology/ICD10CM" }, { - "@id": "http://aber-owl.net/ontology/PROV" + "@id": "http://aber-owl.net/ontology/CTCAE" }, { - "@id": "http://aber-owl.net/ontology/MI" + "@id": "http://aber-owl.net/ontology/GALEN" }, { - "@id": "http://aber-owl.net/ontology/INO" + "@id": "http://aber-owl.net/ontology/IDO" }, { - "@id": "http://aber-owl.net/ontology/HSAPDV" + "@id": "http://aber-owl.net/ontology/KISAO" }, { - "@id": "http://aber-owl.net/ontology/PECO" + "@id": "http://aber-owl.net/ontology/FBbi" }, { - "@id": "http://aber-owl.net/ontology/DDANAT" + "@id": "http://aber-owl.net/ontology/ATOL" }, { - "@id": "http://aber-owl.net/ontology/XAO" + "@id": "http://aber-owl.net/ontology/VIDO" }, { - "@id": "http://aber-owl.net/ontology/SWO" + "@id": "http://aber-owl.net/ontology/ICD10PCS" }, { - "@id": "http://aber-owl.net/ontology/PRIDE" + "@id": "http://aber-owl.net/ontology/CHEBI" }, { - "@id": "http://aber-owl.net/ontology/XCO" + "@id": "http://aber-owl.net/ontology/CDAO" }, { - "@id": "http://aber-owl.net/ontology/SEP" + "@id": "http://aber-owl.net/ontology/DTO" }, { - "@id": "http://aber-owl.net/ontology/BTO" + "@id": "http://aber-owl.net/ontology/QUDT" }, { - "@id": "http://aber-owl.net/ontology/SO" + "@id": "http://aber-owl.net/ontology/BIOLINK" }, { - "@id": "http://aber-owl.net/ontology/NGBO" + "@id": "http://aber-owl.net/ontology/NMR" }, { - "@id": "http://aber-owl.net/ontology/MA" + "@id": "http://aber-owl.net/ontology/EUPATH" }, { - "@id": "http://aber-owl.net/ontology/NBO" + "@id": "http://aber-owl.net/ontology/FIDEO" }, { - "@id": "http://aber-owl.net/ontology/AMPHX" + "@id": "http://aber-owl.net/ontology/FBCV" }, { - "@id": "http://aber-owl.net/ontology/BIOLINK" + "@id": "http://aber-owl.net/ontology/UBERON" }, { - "@id": "http://aber-owl.net/ontology/CAO" + "@id": "http://aber-owl.net/ontology/ENVO" }, { - "@id": "http://aber-owl.net/ontology/COVID19" + "@id": "http://aber-owl.net/ontology/TAXRANK" }, { - "@id": "http://aber-owl.net/ontology/ECO" + "@id": "http://aber-owl.net/ontology/OHD" }, { - "@id": "http://aber-owl.net/ontology/OARCS" + "@id": "http://aber-owl.net/ontology/OGG" }, { - "@id": "http://aber-owl.net/ontology/FOODON" + "@id": "http://aber-owl.net/ontology/DINTO" }, { - "@id": "http://aber-owl.net/ontology/XPO" + "@id": "http://aber-owl.net/ontology/DCAT" }, { - "@id": "http://aber-owl.net/ontology/LEPAO" + "@id": "http://aber-owl.net/ontology/BFO" }, { - "@id": "http://aber-owl.net/ontology/OGSF" + "@id": "http://aber-owl.net/ontology/ICF" }, { - "@id": "http://aber-owl.net/ontology/SIO" + "@id": "http://aber-owl.net/ontology/MA" }, { - "@id": "http://aber-owl.net/ontology/LABO" + "@id": "http://aber-owl.net/ontology/MAMO" }, { - "@id": "http://aber-owl.net/ontology/EHDA" + "@id": "http://aber-owl.net/ontology/NCBITAXON" }, { - "@id": "http://aber-owl.net/ontology/OAE" + "@id": "http://aber-owl.net/ontology/SEP" }, { - "@id": "http://aber-owl.net/ontology/REXO" + "@id": "http://aber-owl.net/ontology/DISDRIV" }, { - "@id": "http://aber-owl.net/ontology/NOMEN" + "@id": "http://aber-owl.net/ontology/BCI-O" }, { - "@id": "http://aber-owl.net/ontology/RADLEX" + "@id": "http://aber-owl.net/ontology/TEDDY" }, { - "@id": "http://aber-owl.net/ontology/UBERON" + "@id": "http://aber-owl.net/ontology/PDRO" }, { - "@id": "http://aber-owl.net/ontology/MRO" + "@id": "http://aber-owl.net/ontology/OM" }, { - "@id": "http://aber-owl.net/ontology/ADW" + "@id": "http://aber-owl.net/ontology/DIDEO" }, { - "@id": "http://aber-owl.net/ontology/CTCAE" + "@id": "http://aber-owl.net/ontology/MOSAIC" }, { - "@id": "http://aber-owl.net/ontology/ICD10" + "@id": "http://aber-owl.net/ontology/SBO" }, { - "@id": "http://aber-owl.net/ontology/CHIRO" + "@id": "http://aber-owl.net/ontology/CAO" }, { - "@id": "http://aber-owl.net/ontology/OPMI" + "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS" }, { - "@id": "http://aber-owl.net/ontology/ECAO" + "@id": "http://aber-owl.net/ontology/PAV" }, { - "@id": "http://aber-owl.net/ontology/ECOCORE" + "@id": "http://aber-owl.net/ontology/GFO" }, { - "@id": "http://aber-owl.net/ontology/MMO" + "@id": "http://aber-owl.net/ontology/FOBI" }, { - "@id": "http://aber-owl.net/ontology/LIPRO" + "@id": "http://aber-owl.net/ontology/PATO" }, { - "@id": "http://aber-owl.net/ontology/ONTOAVIDA" + "@id": "http://aber-owl.net/ontology/ICDO" }, { - "@id": "http://aber-owl.net/ontology/NMR" + "@id": "http://aber-owl.net/ontology/PHIPO" }, { - "@id": "http://aber-owl.net/ontology/ZP" + "@id": "http://aber-owl.net/ontology/CLAO" }, { - "@id": "http://aber-owl.net/ontology/CHMO" + "@id": "http://aber-owl.net/ontology/LOINC" }, { "@id": "http://aber-owl.net/ontology/SENSO" }, { - "@id": "http://aber-owl.net/ontology/EPSO" + "@id": "http://aber-owl.net/ontology/VTO" }, { - "@id": "http://aber-owl.net/ontology/CHEMINF" + "@id": "http://aber-owl.net/ontology/TRANS" }, { - "@id": "http://aber-owl.net/ontology/OBA" + "@id": "http://aber-owl.net/ontology/DUO" }, { - "@id": "http://aber-owl.net/ontology/OHD" + "@id": "http://aber-owl.net/ontology/OBI" }, { - "@id": "http://aber-owl.net/ontology/LBO" + "@id": "http://aber-owl.net/ontology/CEPH" }, { - "@id": "http://aber-owl.net/ontology/SCDO" + "@id": "http://aber-owl.net/ontology/ZFS" }, { - "@id": "http://aber-owl.net/ontology/MFOEM" + "@id": "http://aber-owl.net/ontology/IOBC" }, { - "@id": "http://aber-owl.net/ontology/ICD9CM" + "@id": "http://aber-owl.net/ontology/OA" }, { - "@id": "http://aber-owl.net/ontology/HANCESTRO" + "@id": "http://aber-owl.net/ontology/OHPI" }, { - "@id": "http://aber-owl.net/ontology/VSO" + "@id": "http://aber-owl.net/ontology/ONS" }, { - "@id": "http://aber-owl.net/ontology/CL" + "@id": "http://aber-owl.net/ontology/SALMON" }, { - "@id": "http://aber-owl.net/ontology/EDAM" + "@id": "http://aber-owl.net/ontology/BAO" }, { - "@id": "http://aber-owl.net/ontology/STATO" + "@id": "http://aber-owl.net/ontology/STY" }, { - "@id": "http://aber-owl.net/ontology/GRO" + "@id": "http://aber-owl.net/ontology/PR" }, { - "@id": "http://aber-owl.net/ontology/WBLS" + "@id": "http://aber-owl.net/ontology/DPO" }, { - "@id": "http://aber-owl.net/ontology/MIAPA" + "@id": "http://aber-owl.net/ontology/MONDO" }, { - "@id": "http://aber-owl.net/ontology/MIRO" + "@id": "http://aber-owl.net/ontology/OMO" }, { - "@id": "http://aber-owl.net/ontology/OHMI" + "@id": "http://aber-owl.net/ontology/ERO" }, { - "@id": "http://aber-owl.net/ontology/FIX" + "@id": "http://aber-owl.net/ontology/RETO" }, { - "@id": "http://aber-owl.net/ontology/GSSO" + "@id": "http://aber-owl.net/ontology/CCF" }, { - "@id": "http://aber-owl.net/ontology/ICD10PCS" + "@id": "http://aber-owl.net/ontology/SIO" }, { - "@id": "http://aber-owl.net/ontology/HCPCS" + "@id": "http://aber-owl.net/ontology/AISM" }, { - "@id": "http://aber-owl.net/ontology/VSAO" + "@id": "http://aber-owl.net/ontology/PPO" }, { - "@id": "http://aber-owl.net/ontology/VIDO" + "@id": "http://aber-owl.net/ontology/ONE" }, { - "@id": "http://aber-owl.net/ontology/OM" + "@id": "http://aber-owl.net/ontology/FOODON" }, { - "@id": "http://aber-owl.net/ontology/PCO" + "@id": "http://aber-owl.net/ontology/CRISP" }, { - "@id": "http://aber-owl.net/ontology/MDM" + "@id": "http://aber-owl.net/ontology/CTENO" }, { - "@id": "http://aber-owl.net/ontology/MIXS" + "@id": "http://aber-owl.net/ontology/IDOMAL" }, { - "@id": "http://aber-owl.net/ontology/NPO" + "@id": "http://aber-owl.net/ontology/PSDO" }, { - "@id": "http://aber-owl.net/ontology/OHPI" + "@id": "http://aber-owl.net/ontology/ONTONEO" }, { - "@id": "http://aber-owl.net/ontology/TIME" + "@id": "http://aber-owl.net/ontology/STATO" }, { - "@id": "http://aber-owl.net/ontology/OGG" + "@id": "http://aber-owl.net/ontology/APOLLO_SV" }, { - "@id": "http://aber-owl.net/ontology/ZFA" + "@id": "http://aber-owl.net/ontology/CHEMINF" }, { - "@id": "http://aber-owl.net/ontology/XLMOD" + "@id": "http://aber-owl.net/ontology/OMIM" }, { - "@id": "http://aber-owl.net/ontology/OVAE" + "@id": "http://aber-owl.net/ontology/HP_O" }, { - "@id": "http://aber-owl.net/ontology/ordo" + "@id": "http://aber-owl.net/ontology/BCO" }, { - "@id": "http://aber-owl.net/ontology/SAO" + "@id": "http://aber-owl.net/ontology/CTO" }, { - "@id": "http://aber-owl.net/ontology/PDRO" + "@id": "http://aber-owl.net/ontology/NBO" }, { - "@id": "http://aber-owl.net/ontology/ENVO" + "@id": "http://aber-owl.net/ontology/COVID19" }, { - "@id": "http://aber-owl.net/ontology/MOSAIC" + "@id": "http://aber-owl.net/ontology/FLU" }, { - "@id": "http://aber-owl.net/ontology/OPB" + "@id": "http://aber-owl.net/ontology/SUGARBIND" }, { - "@id": "http://aber-owl.net/ontology/RS" + "@id": "http://aber-owl.net/ontology/HANCESTRO" }, { - "@id": "http://aber-owl.net/ontology/MP" + "@id": "http://aber-owl.net/ontology/OGI" }, { - "@id": "http://aber-owl.net/ontology/CTENO" + "@id": "http://aber-owl.net/ontology/FBBT" }, { - "@id": "http://aber-owl.net/ontology/VO" + "@id": "http://aber-owl.net/ontology/T4FS" }, { - "@id": "http://aber-owl.net/ontology/IDO" + "@id": "http://aber-owl.net/ontology/TTO" }, { - "@id": "http://aber-owl.net/ontology/FB-SP" + "@id": "http://aber-owl.net/ontology/ATO" }, { - "@id": "http://aber-owl.net/ontology/TXPO" + "@id": "http://aber-owl.net/ontology/HCPCS" }, { - "@id": "http://aber-owl.net/ontology/GENEPIO" + "@id": "http://aber-owl.net/ontology/PLANA" }, { - "@id": "http://aber-owl.net/ontology/OBI" + "@id": "http://aber-owl.net/ontology/FB-SP" }, { - "@id": "http://aber-owl.net/ontology/SPD" + "@id": "http://aber-owl.net/ontology/ADCAD" }, { - "@id": "http://aber-owl.net/ontology/AERO" + "@id": "http://aber-owl.net/ontology/VBO" }, { - "@id": "http://aber-owl.net/ontology/GFO" + "@id": "http://aber-owl.net/ontology/CL" }, { - "@id": "http://aber-owl.net/ontology/CCO" + "@id": "http://aber-owl.net/ontology/GO" }, { - "@id": "http://aber-owl.net/ontology/EXO" + "@id": "http://aber-owl.net/ontology/ENM" }, { - "@id": "http://aber-owl.net/ontology/FALDO" + "@id": "http://aber-owl.net/ontology/CIDO" }, { - "@id": "http://aber-owl.net/ontology/DDPHENO" + "@id": "http://aber-owl.net/ontology/EO" }, { - "@id": "http://aber-owl.net/ontology/SUGARBIND" + "@id": "http://aber-owl.net/ontology/OPMI" }, { - "@id": "http://aber-owl.net/ontology/CRYOEM" + "@id": "http://aber-owl.net/ontology/OLATDV" }, { - "@id": "http://aber-owl.net/ontology/dcelements" + "@id": "http://aber-owl.net/ontology/SO" }, { - "@id": "http://aber-owl.net/ontology/PR" + "@id": "http://aber-owl.net/ontology/MFOMD" }, { - "@id": "http://aber-owl.net/ontology/APOLLO_SV" + "@id": "http://aber-owl.net/ontology/CIO" }, { - "@id": "http://aber-owl.net/ontology/CEPH" + "@id": "http://aber-owl.net/ontology/IAO" }, { - "@id": "http://aber-owl.net/ontology/MAT" + "@id": "http://aber-owl.net/ontology/REPRODUCE-ME" }, { - "@id": "http://aber-owl.net/ontology/GECKO" + "@id": "http://aber-owl.net/ontology/MEDLINEPLUS" }, { - "@id": "http://aber-owl.net/ontology/EO" + "@id": "http://aber-owl.net/ontology/LIPRO" }, { - "@id": "http://aber-owl.net/ontology/OMIT" + "@id": "http://aber-owl.net/ontology/NCIT" }, { - "@id": "http://aber-owl.net/ontology/ATO" + "@id": "http://aber-owl.net/ontology/foaf" }, { - "@id": "http://aber-owl.net/ontology/OLATDV" + "@id": "http://aber-owl.net/ontology/MOP" }, { - "@id": "http://aber-owl.net/ontology/CCF" + "@id": "http://aber-owl.net/ontology/DATACITE" }, { - "@id": "http://aber-owl.net/ontology/FOBI" + "@id": "http://aber-owl.net/ontology/ADO" }, { - "@id": "http://aber-owl.net/ontology/IOBC" + "@id": "http://aber-owl.net/ontology/OPL" }, { - "@id": "http://aber-owl.net/ontology/ECTO" + "@id": "http://aber-owl.net/ontology/RO" }, { - "@id": "http://aber-owl.net/ontology/EUPATH" + "@id": "http://aber-owl.net/ontology/EXO" }, { - "@id": "http://aber-owl.net/ontology/CPT" + "@id": "http://aber-owl.net/ontology/MESH" }, { - "@id": "http://aber-owl.net/ontology/NIFSTD" + "@id": "http://aber-owl.net/ontology/MS" }, { - "@id": "http://aber-owl.net/ontology/OMIABIS" + "@id": "http://aber-owl.net/ontology/GEO" }, { - "@id": "http://aber-owl.net/ontology/VT" + "@id": "http://aber-owl.net/ontology/ICO" }, { - "@id": "http://aber-owl.net/ontology/HTN" + "@id": "http://aber-owl.net/ontology/OPB" }, { - "@id": "http://aber-owl.net/ontology/MFMO" + "@id": "http://aber-owl.net/ontology/TADS" }, { - "@id": "http://aber-owl.net/ontology/MO" + "@id": "http://aber-owl.net/ontology/NPO" }, { - "@id": "http://aber-owl.net/ontology/UPA" + "@id": "http://aber-owl.net/ontology/ZECO" }, { - "@id": "http://aber-owl.net/ontology/TEDDY" + "@id": "http://aber-owl.net/ontology/PW" }, { - "@id": "http://aber-owl.net/ontology/UPHENO" + "@id": "http://aber-owl.net/ontology/CHIRO" }, { - "@id": "http://aber-owl.net/ontology/SALMON" + "@id": "http://aber-owl.net/ontology/UP" }, { - "@id": "http://aber-owl.net/ontology/MPATH" + "@id": "http://aber-owl.net/ontology/XPO" }, { - "@id": "http://aber-owl.net/ontology/DOID" + "@id": "http://aber-owl.net/ontology/TAO" }, { - "@id": "http://aber-owl.net/ontology/SASAP" + "@id": "http://aber-owl.net/ontology/ICD9CM" }, { - "@id": "http://aber-owl.net/ontology/RBO" + "@id": "http://aber-owl.net/ontology/FPLX" }, { - "@id": "http://aber-owl.net/ontology/EFO" + "@id": "http://aber-owl.net/ontology/RGD" }, { - "@id": "http://aber-owl.net/ontology/GNO" + "@id": "http://aber-owl.net/ontology/AFO" }, { "@id": "http://aber-owl.net/ontology/DRON" }, { - "@id": "http://aber-owl.net/ontology/skos" + "@id": "http://aber-owl.net/ontology/FRAPO" }, { - "@id": "http://aber-owl.net/ontology/CIDO" + "@id": "http://aber-owl.net/ontology/MFO" }, { - "@id": "http://aber-owl.net/ontology/DISDRIV" + "@id": "http://aber-owl.net/ontology/MICRO" }, { - "@id": "http://aber-owl.net/ontology/OBCS" + "@id": "http://aber-owl.net/ontology/AGRO" }, { - "@id": "http://aber-owl.net/ontology/RNAO" + "@id": "http://aber-owl.net/ontology/FBDV" }, { - "@id": "http://aber-owl.net/ontology/MIRNAO" + "@id": "http://aber-owl.net/ontology/BCGO" }, { - "@id": "http://aber-owl.net/ontology/OPL" + "@id": "http://aber-owl.net/ontology/SCHEMAORG" }, { - "@id": "http://aber-owl.net/ontology/BAO" + "@id": "http://aber-owl.net/ontology/WBBT" }, { - "@id": "http://aber-owl.net/ontology/ZFS" + "@id": "http://aber-owl.net/ontology/BTO" }, { - "@id": "http://aber-owl.net/ontology/NDDF" + "@id": "http://aber-owl.net/ontology/FYPO" }, { - "@id": "http://aber-owl.net/ontology/ICD10CM" + "@id": "http://aber-owl.net/ontology/EMAPA" }, { - "@id": "http://aber-owl.net/ontology/ARO" + "@id": "http://aber-owl.net/ontology/NCRO" }, { - "@id": "http://aber-owl.net/ontology/NIFCELL" + "@id": "http://aber-owl.net/ontology/MMO" }, { - "@id": "http://aber-owl.net/ontology/NCIT" + "@id": "http://aber-owl.net/ontology/MIAPA" }, { - "@id": "http://aber-owl.net/ontology/CLO" + "@id": "http://aber-owl.net/ontology/ZP" }, { - "@id": "http://aber-owl.net/ontology/APO" + "@id": "http://aber-owl.net/ontology/RNAO" }, { - "@id": "http://aber-owl.net/ontology/OGMS" + "@id": "http://aber-owl.net/ontology/OVAE" }, { - "@id": "http://aber-owl.net/ontology/HGNC" + "@id": "http://aber-owl.net/ontology/ECO" }, { - "@id": "http://aber-owl.net/ontology/LOINC" + "@id": "http://aber-owl.net/ontology/FIX" }, { - "@id": "http://aber-owl.net/ontology/TO" + "@id": "http://aber-owl.net/ontology/TIME" }, { - "@id": "http://aber-owl.net/ontology/MPIO" + "@id": "http://aber-owl.net/ontology/TGMA" }, { - "@id": "http://aber-owl.net/ontology/BCI-O" + "@id": "http://aber-owl.net/ontology/NDDF" }, { - "@id": "http://aber-owl.net/ontology/DINTO" + "@id": "http://aber-owl.net/ontology/ECSO" }, { - "@id": "http://aber-owl.net/ontology/RDFS" + "@id": "http://aber-owl.net/ontology/PDUMDV" }, { - "@id": "http://aber-owl.net/ontology/PSDO" + "@id": "http://aber-owl.net/ontology/EDAM" }, { - "@id": "http://aber-owl.net/ontology/FLOPO" + "@id": "http://aber-owl.net/ontology/OBA" }, { - "@id": "http://aber-owl.net/ontology/PSO" + "@id": "http://aber-owl.net/ontology/ordo" }, { - "@id": "http://aber-owl.net/ontology/MEDLINEPLUS" + "@id": "http://aber-owl.net/ontology/PORO" }, { - "@id": "http://aber-owl.net/ontology/CARO" + "@id": "http://aber-owl.net/ontology/OARCS" }, { - "@id": "http://aber-owl.net/ontology/ECG" + "@id": "http://aber-owl.net/ontology/OBIB" }, { - "@id": "http://aber-owl.net/ontology/ATOL" + "@id": "http://aber-owl.net/ontology/WBPHENOTYPE" }, { - "@id": "http://aber-owl.net/ontology/MAMO" + "@id": "http://aber-owl.net/ontology/WBLS" }, { - "@id": "http://aber-owl.net/ontology/ICO" + "@id": "http://aber-owl.net/ontology/GECKO" }, { - "@id": "http://aber-owl.net/ontology/MESH" + "@id": "http://aber-owl.net/ontology/MRO" }, { - "@id": "http://aber-owl.net/ontology/VHOG" + "@id": "http://aber-owl.net/ontology/GNO" }, { - "@id": "http://aber-owl.net/ontology/FYPO" + "@id": "http://aber-owl.net/ontology/SASAP" }, { - "@id": "http://aber-owl.net/ontology/PROCO" + "@id": "http://aber-owl.net/ontology/MAT" }, { - "@id": "http://aber-owl.net/ontology/MICRO" + "@id": "http://aber-owl.net/ontology/EOL" }, { - "@id": "http://aber-owl.net/ontology/RO" + "@id": "http://aber-owl.net/ontology/PO" }, { - "@id": "http://aber-owl.net/ontology/T4FS" + "@id": "http://aber-owl.net/ontology/MP" }, { - "@id": "http://aber-owl.net/ontology/GO" + "@id": "http://aber-owl.net/ontology/EPSO" }, { - "@id": "http://aber-owl.net/ontology/PLANP" + "@id": "http://aber-owl.net/ontology/ONTOAVIDA" }, { - "@id": "http://aber-owl.net/ontology/ADO" + "@id": "http://aber-owl.net/ontology/OAE" }, { - "@id": "http://aber-owl.net/ontology/TRANS" + "@id": "http://aber-owl.net/ontology/EPIO" }, { - "@id": "http://aber-owl.net/ontology/MCRO" + "@id": "http://aber-owl.net/ontology/PROV" }, { - "@id": "http://aber-owl.net/ontology/ICDO" + "@id": "http://aber-owl.net/ontology/CLYH" }, { - "@id": "http://aber-owl.net/ontology/GENO" + "@id": "http://aber-owl.net/ontology/SEPIO" }, { - "@id": "http://aber-owl.net/ontology/EPIO" + "@id": "http://aber-owl.net/ontology/BKO" }, { - "@id": "http://aber-owl.net/ontology/SYMP" + "@id": "http://aber-owl.net/ontology/SCDO" }, { - "@id": "http://aber-owl.net/ontology/STY" + "@id": "http://aber-owl.net/ontology/CHMO" }, { - "@id": "http://aber-owl.net/ontology/NANDO" + "@id": "http://aber-owl.net/ontology/HGNC" }, { - "@id": "http://aber-owl.net/ontology/OOSTT" + "@id": "http://aber-owl.net/ontology/CPT" }, { - "@id": "http://aber-owl.net/ontology/APAONTO" + "@id": "http://aber-owl.net/ontology/skos" }, { - "@id": "http://aber-owl.net/ontology/NDFRT" + "@id": "http://aber-owl.net/ontology/CVDO" }, { - "@id": "http://aber-owl.net/ontology/ORTH" + "@id": "http://aber-owl.net/ontology/MIXS" }, { - "@id": "http://aber-owl.net/ontology/AFO" + "@id": "http://aber-owl.net/ontology/FALDO" }, { - "@id": "http://aber-owl.net/ontology/CTO" + "@id": "http://aber-owl.net/ontology/GAZ" }, { - "@id": "http://aber-owl.net/ontology/FPLX" + "@id": "http://aber-owl.net/ontology/dcterms" }, { - "@id": "http://aber-owl.net/ontology/EDDA" + "@id": "http://aber-owl.net/ontology/VSAO" }, { - "@id": "http://aber-owl.net/ontology/SIBO" + "@id": "http://aber-owl.net/ontology/MF" }, { - "@id": "http://aber-owl.net/ontology/FBDV" + "@id": "http://aber-owl.net/ontology/VARIO" }, { - "@id": "http://aber-owl.net/ontology/MS" + "@id": "http://aber-owl.net/ontology/HAO" }, { - "@id": "http://aber-owl.net/ontology/CLYH" + "@id": "http://aber-owl.net/ontology/CCO" }, { - "@id": "http://aber-owl.net/ontology/MEDDRA" + "@id": "http://aber-owl.net/ontology/FLOPO" }, { - "@id": "http://aber-owl.net/ontology/ICF" - }, - { - "@id": "http://aber-owl.net/ontology/ENM" - }, - { - "@id": "http://aber-owl.net/ontology/TGMA" - }, - { - "@id": "http://aber-owl.net/ontology/CDNO" - }, - { - "@id": "http://aber-owl.net/ontology/CLAO" - }, - { - "@id": "http://aber-owl.net/ontology/RXNORM" - }, - { - "@id": "http://aber-owl.net/ontology/OMRSE" - }, - { - "@id": "http://aber-owl.net/ontology/FAO" - }, - { - "@id": "http://aber-owl.net/ontology/MFOMD" - }, - { - "@id": "http://aber-owl.net/ontology/PATO" + "@id": "http://aber-owl.net/ontology/TXPO" }, { - "@id": "http://aber-owl.net/ontology/ERO" + "@id": "http://aber-owl.net/ontology/EHDA" }, { - "@id": "http://aber-owl.net/ontology/GEO" + "@id": "http://aber-owl.net/ontology/REX" }, { - "@id": "http://aber-owl.net/ontology/FOVT" + "@id": "http://aber-owl.net/ontology/PHENX" }, { - "@id": "http://aber-owl.net/ontology/FLU" + "@id": "http://aber-owl.net/ontology/PSO" }, { - "@id": "http://aber-owl.net/ontology/UP" + "@id": "http://aber-owl.net/ontology/VT" }, { - "@id": "http://aber-owl.net/ontology/BIRNLEX" + "@id": "http://aber-owl.net/ontology/HOM" }, { - "@id": "http://aber-owl.net/ontology/ROLEO" + "@id": "http://aber-owl.net/ontology/EDDA" }, { - "@id": "http://aber-owl.net/ontology/ZEA" + "@id": "http://aber-owl.net/ontology/RBO" }, { - "@id": "http://aber-owl.net/ontology/HOM" + "@id": "http://aber-owl.net/ontology/GSSO" }, { - "@id": "http://aber-owl.net/ontology/EHDAA2" + "@id": "http://aber-owl.net/ontology/SNOMEDCT" }, { - "@id": "http://aber-owl.net/ontology/CDAO" + "@id": "http://aber-owl.net/ontology/OGSF" }, { - "@id": "http://aber-owl.net/ontology/CMPO" + "@id": "http://aber-owl.net/ontology/VSO" }, { - "@id": "http://aber-owl.net/ontology/VANDF" + "@id": "http://aber-owl.net/ontology/MFOEM" }, { - "@id": "http://aber-owl.net/ontology/CMO" + "@id": "http://aber-owl.net/ontology/GENO" }, { - "@id": "http://aber-owl.net/ontology/ORNASEQ" + "@id": "http://aber-owl.net/ontology/MEDDRA" }, { - "@id": "http://aber-owl.net/ontology/dcterms" + "@id": "http://aber-owl.net/ontology/ZFA" }, { - "@id": "http://aber-owl.net/ontology/KISAO" + "@id": "http://aber-owl.net/ontology/APAONTO" }, { - "@id": "http://aber-owl.net/ontology/NCRO" + "@id": "http://aber-owl.net/ontology/BSPO" }, { - "@id": "http://aber-owl.net/ontology/FIDEO" + "@id": "http://aber-owl.net/ontology/HTN" }, { - "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS" + "@id": "http://aber-owl.net/ontology/DDANAT" }, { - "@id": "http://aber-owl.net/ontology/FBCV" + "@id": "http://aber-owl.net/ontology/LBO" }, { - "@id": "http://aber-owl.net/ontology/WBBT" + "@id": "http://aber-owl.net/ontology/MCO" }, { - "@id": "http://aber-owl.net/ontology/TADS" + "@id": "http://aber-owl.net/ontology/PSIMOD" }, { - "@id": "http://aber-owl.net/ontology/SCHEMAORG" + "@id": "http://aber-owl.net/ontology/OOSTT" }, { - "@id": "http://aber-owl.net/ontology/FBbi" + "@id": "http://aber-owl.net/ontology/AIO" }, { - "@id": "http://aber-owl.net/ontology/PO" + "@id": "http://aber-owl.net/ontology/MIRO" }, { - "@id": "http://aber-owl.net/ontology/COB" + "@id": "http://aber-owl.net/ontology/NGBO" }, { - "@id": "http://aber-owl.net/ontology/MF" + "@id": "http://aber-owl.net/ontology/COLAO" }, { - "@id": "http://aber-owl.net/ontology/AGRO" + "@id": "http://aber-owl.net/ontology/VO" }, { - "@id": "http://aber-owl.net/ontology/PPO" - }, + "@id": "http://aber-owl.net/ontology/MAXO" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AberOWL" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "http://aber-owl.net" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "CHEBI" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "http://aber-owl.net/ontology/$1" + }, + "https://bioregistry.io/schema/#0000007": { + "@value": "http://aber-owl.net/ontology/$1/#/Browse/" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5103-9058" + } + }, + { + "@id": "https://registry.identifiers.org/registry/wikigenes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2631", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/eugenes", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Eukaryotic Genes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/GAZ" + "@id": "https://registry.bio2kg.org/resource/eugenes" }, { - "@id": "http://aber-owl.net/ontology/OMIM" - }, + "@id": "https://fairsharing.org/FAIRsharing.7fc5y6" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/CVDO" + "@value": "ontology" }, { - "@id": "http://aber-owl.net/ontology/MONDO" + "@value": "life science" }, { - "@id": "http://aber-owl.net/ontology/DPO" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://eugenes.org/" + }, + "https://bioregistry.io/schema/#0000005": "MGgn0008978", + "https://bioregistry.io/schema/#0000006": "http://eugenes.org:7072/.bin/fbidq.html?$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6646-7274" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://eugenes.org:7072/.bin/fbidq.html?", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://eugenes.org:7072/.bin/fbidq.html?MGgn0008978" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "eugenes" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/chembl.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HDR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/planttfdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plant Transcription Factor Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ATC" + "@id": "https://fairsharing.org/FAIRsharing.ex3fqk" }, { - "@id": "http://aber-owl.net/ontology/ONTONEO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb" }, { - "@id": "http://aber-owl.net/ontology/WBPHENOTYPE" + "@id": "https://www.re3data.org/repository/r3d100011301" }, { - "@id": "http://aber-owl.net/ontology/IDOMAL" + "@id": "https://registry.bio2kg.org/resource/planttfdb" }, { - "@id": "http://aber-owl.net/ontology/AISM" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB" }, { - "@id": "http://aber-owl.net/ontology/ADCAD" - }, + "@id": "https://registry.identifiers.org/registry/planttfdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/HOIP" + "@value": "small molecule" }, { - "@id": "http://aber-owl.net/ontology/GALEN" + "@value": "dna" }, { - "@id": "http://aber-owl.net/ontology/SBO" + "@value": "life science" }, { - "@id": "http://aber-owl.net/ontology/ZECO" + "@value": "protein" }, { - "@id": "http://aber-owl.net/ontology/PHIPO" + "@value": "rna" }, { - "@id": "http://aber-owl.net/ontology/DIDEO" + "@value": "gene" }, { - "@id": "http://aber-owl.net/ontology/DCAT" - }, + "@value": "regulation" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://planttfdb.cbi.pku.edu.cn" + }, + "https://bioregistry.io/schema/#0000005": "Ath_AT1G01030.1", + "https://bioregistry.io/schema/#0000006": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=Ath_AT1G01030.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "planttfdb" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/agro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/px", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ProteomeXchange" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ECSO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px" }, { - "@id": "http://aber-owl.net/ontology/PW" + "@id": "https://registry.identifiers.org/registry/px" }, { - "@id": "http://aber-owl.net/ontology/BKO" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/PX" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.proteomexchange.org/" + }, + "https://bioregistry.io/schema/#0000005": "PXD000500", + "https://bioregistry.io/schema/#0000006": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1", + "https://bioregistry.io/schema/#0000008": "^(R)?PXD\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000500" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "px" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.fs1z27", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pmap.cutdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/imsr.apb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NHMRC Australian PhenomeBank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/VBO" + "@value": "live mouse" }, { - "@id": "http://aber-owl.net/ontology/XL" + "@value": "database" }, { - "@id": "http://aber-owl.net/ontology/UO" + "@value": "transgenic" }, { - "@id": "http://aber-owl.net/ontology/PCL" + "@value": "transgene" }, { - "@id": "http://aber-owl.net/ontology/GEXO" + "@value": "gene" }, { - "@id": "http://aber-owl.net/ontology/ONE" + "@value": "mutation" }, { - "@id": "http://aber-owl.net/ontology/REPRODUCE-ME" + "@value": "murine" }, { - "@id": "http://aber-owl.net/ontology/DTO" + "@value": "embryo" }, { - "@id": "http://aber-owl.net/ontology/RGD" + "@value": "strain" }, { - "@id": "http://aber-owl.net/ontology/VTO" + "@value": "sperm" }, { - "@id": "http://aber-owl.net/ontology/RETO" + "@value": "chromosome" }, { - "@id": "http://aber-owl.net/ontology/PSIMOD" + "@value": "alteration" }, { - "@id": "http://aber-owl.net/ontology/CHEBI" + "@value": "allele" }, { - "@id": "http://aber-owl.net/ontology/CMF" - }, + "@value": "phenotype" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pb.apf.edu.au/phenbank/homePage.html" + }, + "https://bioregistry.io/schema/#0000005": "7345", + "https://bioregistry.io/schema/#0000006": "https://pb.apf.edu.au/phenbank/strain.html?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://pb.apf.edu.au/phenbank/strain.html?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pb.apf.edu.au/phenbank/strain.html?id=7345" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "imsr.apb" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011646", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/oae", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OAE-ontology/OAE" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of Adverse Events" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ONS" + "@id": "https://www.obofoundry.org/ontology/oae" }, { - "@id": "http://aber-owl.net/ontology/CIO" + "@id": "http://www.ontobee.org/ontology/OAE" }, { - "@id": "http://aber-owl.net/ontology/DUO" + "@id": "http://aber-owl.net/ontology/OAE" }, { - "@id": "http://aber-owl.net/ontology/IDO-COVID-19" + "@id": "https://fairsharing.org/FAIRsharing.tw4q8x" }, { - "@id": "http://aber-owl.net/ontology/ITO" + "@id": "https://bioportal.bioontology.org/ontologies/OAE" }, { - "@id": "http://aber-owl.net/ontology/HSO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OAE" }, { - "@id": "http://aber-owl.net/ontology/TAO" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/FMA" + "@value": "biomedical science" }, { - "@id": "http://aber-owl.net/ontology/PMR" + "@value": "ontology" }, { - "@id": "http://aber-owl.net/ontology/MOP" + "@value": "obo" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AberOWL" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://aber-owl.net" + "@id": "https://github.com/OAE-ontology/OAE/" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CHEBI" + "https://bioregistry.io/schema/#0000005": "0002959", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OAE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/oae.owl" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://aber-owl.net/ontology/$1" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "http://aber-owl.net/ontology/$1/#/Browse/" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OAE_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OAE_0002959" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5103-9058" + "https://bioregistry.io/schema/#0000029": { + "@value": "oae" } }, { - "@id": "https://www.obofoundry.org/ontology/rs", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/omiabis", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/hgnc.genegroup", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.", + "@id": "https://fairsharing.org/FAIRsharing.aae3v6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HGNC Gene Group" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/hgnc.genegroup" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genenames.org" - }, - "https://bioregistry.io/schema/#0000005": "141", - "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/genefamilies/set/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/genefamilies/set/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genenames.org/cgi-bin/genefamilies/set/141" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hgnc.genegroup" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/dlxb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/dlx" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Linear double stranded DNA sequences" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dlxb" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://doulix.com" - }, - "https://bioregistry.io/schema/#0000005": "6VDC956", - "https://bioregistry.io/schema/#0000006": "https://doulix.com/biomodules/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{6,7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://doulix.com/biomodules/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://doulix.com/biomodules/6VDC956" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dlxb" + "@id": "https://fairsharing.org/FAIRsharing.b084yh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/kegg.metagenome", + "@id": "https://bioregistry.io/metaregistry/biocontext/pav", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/t4fs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/vgnc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], + "http://purl.org/dc/terms/description": "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Metagenome" + "@value": "Vertebrate Gene Nomenclature Committee" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/kegg.metagenome" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.metagenome" + "@id": "https://fairsharing.org/FAIRsharing.5NhJFK" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME" + "@id": "https://registry.identifiers.org/registry/vgnc" + }, + { + "@id": "https://www.uniprot.org/database/DB-0226" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" + "@value": "life science" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/catalog/org_list3.html" + "@id": "https://vertebrate.genenames.org" }, - "https://bioregistry.io/schema/#0000005": "T30002", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^T3\\d+$", + "https://bioregistry.io/schema/#0000005": "3792", + "https://bioregistry.io/schema/#0000006": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,9}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000024": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/T30002" + "@id": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/3792" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.metagenome" + "@value": "vgnc" } }, { - "@id": "https://www.obofoundry.org/ontology/tto", + "@id": "https://bioportal.bioontology.org/ontologies/IAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3me82d", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/biopixie", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate.", + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/biopixie" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "interaction" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pixie.princeton.edu/pixie/" - }, - "https://bioregistry.io/schema/#0000005": "12", - "https://bioregistry.io/schema/#0000006": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=12" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biopixie" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ea287c", + "@id": "https://registry.identifiers.org/registry/bykdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS", + "@id": "https://registry.bio2kg.org/resource/dailymed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/nucc.taxonomy", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/fr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards.", + "http://purl.org/dc/terms/description": "An ontology that enables the description of reviews of scientific articles and other scholarly resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/fr" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Uniform Claim Committee Taxonomy" + "@value": "FAIR* Reviews Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.e7e609" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://taxonomy.nucc.org" + "@id": "http://www.sparontologies.net/ontologies/fr" }, - "https://bioregistry.io/schema/#0000005": "207LH0002X", - "https://bioregistry.io/schema/#0000008": "^\\d{3}\\w(\\w|\\d_)\\d{4}X$", + "https://bioregistry.io/schema/#0000005": "ReviewVersion", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "nucc.taxonomy" + "@value": "fr" } }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.substance", + "@id": "https://registry.bio2kg.org/resource/eo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.re3data.org/repository/r3d100012828", + "@id": "https://fairsharing.org/FAIRsharing.c06f1e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/cog.category", + "@id": "https://bioregistry.io/registry/ncbibook", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Higher-level classifications of COG Pathways", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/cog" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COG Categories" + "http://purl.org/dc/terms/description": "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "pathways" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Bookshelf" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/" + "@id": "https://www.ncbi.nlm.nih.gov/books" }, - "https://bioregistry.io/schema/#0000005": "K", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1", + "https://bioregistry.io/schema/#0000005": "NBK331", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/books/$1", + "https://bioregistry.io/schema/#0000008": "^NBK\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2265-5572" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/books/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/K" + "@id": "https://www.ncbi.nlm.nih.gov/books/NBK331" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cog.category" + "@value": "ncbibook" } }, { - "@id": "https://bioregistry.io/registry/vcell", + "@id": "https://bioregistry.io/registry/viperdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Models developed with the Virtual Cell (VCell) software prorgam.", + "http://purl.org/dc/terms/description": "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VCell Published Models" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/vcell" + "@value": "VIPERdb" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100012362" + }, + { + "@id": "https://registry.bio2kg.org/resource/viperdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "structure" + }, + { + "@value": "small molecule" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://health.uconn.edu/" + "@id": "http://viperdb.scripps.edu/" + }, + "https://bioregistry.io/schema/#0000005": "2c6s", + "https://bioregistry.io/schema/#0000006": "https://viperdb.org/Info_Page.php?VDB=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/pdb" }, - "https://bioregistry.io/schema/#0000005": "201022999", - "https://bioregistry.io/schema/#0000006": "https://vcell.org/biomodel-$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5,}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://vcell.org/biomodel-", + "https://bioregistry.io/schema/#0000024": "https://viperdb.org/Info_Page.php?VDB=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://vcell.org/biomodel-201022999" + "@id": "https://viperdb.org/Info_Page.php?VDB=2c6s" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vcell" - } - }, - { - "@id": "https://orcid.org/0000-0002-2605-5080", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Karr" - }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "karr@mssm.edu" - }, - { - "@value": "jonrkarr@gmail.com" - } - ] - }, - { - "@id": "https://registry.bio2kg.org/resource/tto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "viperdb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY", + "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/iresite", + "@id": "https://registry.bio2kg.org/resource/vao", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/minid.test", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ", + "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MINID Test" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/minid.test" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fair-research.org" - }, - "https://bioregistry.io/schema/#0000005": "3SBPLMKKVEVR", - "https://bioregistry.io/schema/#0000006": "https://hdl.handle.net/hdl:20.500.12633/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://hdl.handle.net/hdl:20.500.12633/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://hdl.handle.net/hdl:20.500.12633/3SBPLMKKVEVR" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "minid.test" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION", + "@id": "https://registry.identifiers.org/registry/bdgp.est", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/commoncoreontology", + "@id": "https://bioregistry.io/registry/huge", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest.\n\nCCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). Accordingly, CCO classes and relations are heavily constrained by the BFO framework, from which it inherits much of its basic semantic relationships.", + "http://purl.org/dc/terms/description": "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/CommonCoreOntology/CommonCoreOntologies" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Core Ontologies" + "@value": "Human Unidentified Gene-Encoded" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE" + }, + { + "@id": "https://registry.bio2kg.org/resource/huge" + }, + { + "@id": "https://www.uniprot.org/database/DB-0049" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zx2ztd" + }, + { + "@id": "https://registry.identifiers.org/registry/huge" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "dna" }, { - "@value": "upper-level ontology" + "@value": "life science" + }, + { + "@value": "protein" + }, + { + "@value": "computational biology" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ontologyrepository.com" + "@id": "http://www.kazusa.or.jp/huge/" }, - "https://bioregistry.io/schema/#0000005": "DirectiveInformationContentEntity", - "https://bioregistry.io/schema/#0000006": "http://www.ontologyrepository.com/CommonCoreOntologies/$1", + "https://bioregistry.io/schema/#0000005": "KIAA0001", + "https://bioregistry.io/schema/#0000006": "https://www.kazusa.or.jp/huge/gfpage/$1", + "https://bioregistry.io/schema/#0000008": "^KIAA\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9228-8838" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ontologyrepository.com/CommonCoreOntologies/", + "https://bioregistry.io/schema/#0000024": "https://www.kazusa.or.jp/huge/gfpage/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity" + "@id": "https://www.kazusa.or.jp/huge/gfpage/KIAA0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "commoncoreontology" - } - }, - { - "@id": "https://orcid.org/0000-0001-5025-5886", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Idan Gabdank" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gabdank@stanford.edu" + "@value": "huge" } }, { - "@id": "https://registry.identifiers.org/registry/chemidplus", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/swh", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.bio2kg.org/resource/pt", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_324", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ay74mj", + "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/ygob", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/oborel/obo-relations" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Relation Ontology" + "@id": "https://bioregistry.io/metaregistry/re3data", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/RO" + "@id": "https://www.re3data.org/repository/r3d100010670" }, { - "@id": "http://www.ontobee.org/ontology/RO" + "@id": "https://www.re3data.org/repository/r3d100010666" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO" + "@id": "https://www.re3data.org/repository/r3d100010671" }, { - "@id": "https://registry.bio2kg.org/resource/ro" + "@id": "https://www.re3data.org/repository/r3d100010191" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/RO" + "@id": "https://www.re3data.org/repository/r3d100010795" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro" + "@id": "https://www.re3data.org/repository/r3d100011033" }, { - "@id": "https://fairsharing.org/FAIRsharing.9w8ea0" + "@id": "https://www.re3data.org/repository/r3d100012902" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBOREL" + "@id": "https://www.re3data.org/repository/r3d100012265" }, { - "@id": "http://www.wikidata.org/entity/P3590" + "@id": "https://www.re3data.org/repository/r3d100010585" }, { - "@id": "https://www.obofoundry.org/ontology/ro" + "@id": "https://www.re3data.org/repository/r3d100010222" }, { - "@id": "http://aber-owl.net/ontology/RO" + "@id": "https://www.re3data.org/repository/r3d100012721" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro" + "@id": "https://www.re3data.org/repository/r3d100012176" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RO" + "@id": "https://www.re3data.org/repository/r3d100011569" }, { - "@id": "https://registry.identifiers.org/registry/ro" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://www.re3data.org/repository/r3d100012193" }, { - "@value": "ontology" + "@id": "https://www.re3data.org/repository/r3d100012197" }, { - "@value": "life science" + "@id": "https://www.re3data.org/repository/r3d100011198" }, { - "@value": "relations" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://oborel.github.io/" - }, - "https://bioregistry.io/schema/#0000005": "0002533", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RO_$1", - "https://bioregistry.io/schema/#0000008": "^(HOM)?\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ro.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/go" + "@id": "https://www.re3data.org/repository/r3d100010228" }, { - "@id": "https://bioregistry.io/registry/maxo" + "@id": "https://www.re3data.org/repository/r3d100010775" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@id": "https://www.re3data.org/repository/r3d100010197" }, { - "@id": "https://bioregistry.io/registry/ons" + "@id": "https://www.re3data.org/repository/r3d100012733" }, { - "@id": "https://bioregistry.io/registry/hso" + "@id": "https://www.re3data.org/repository/r3d100012429" }, { - "@id": "https://bioregistry.io/registry/cteno" + "@id": "https://www.re3data.org/repository/r3d100010785" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://www.re3data.org/repository/r3d100011195" }, { - "@id": "https://bioregistry.io/registry/planp" + "@id": "https://www.re3data.org/repository/r3d100012385" }, { - "@id": "https://bioregistry.io/registry/genepio" + "@id": "https://www.re3data.org/repository/r3d100011521" }, { - "@id": "https://bioregistry.io/registry/upa" + "@id": "https://www.re3data.org/repository/r3d100011373" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://www.re3data.org/repository/r3d100012828" }, { - "@id": "https://bioregistry.io/registry/poro" + "@id": "https://www.re3data.org/repository/r3d100011478" }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://www.re3data.org/repository/r3d100012311" }, { - "@id": "https://bioregistry.io/registry/colao" + "@id": "https://www.re3data.org/repository/r3d100012647" }, { - "@id": "https://bioregistry.io/registry/clao" + "@id": "https://www.re3data.org/repository/r3d100010591" }, { - "@id": "https://bioregistry.io/registry/zp" + "@id": "https://www.re3data.org/repository/r3d100010170" }, { - "@id": "https://bioregistry.io/registry/cdno" + "@id": "https://www.re3data.org/repository/r3d100010803" }, { - "@id": "https://bioregistry.io/registry/aism" + "@id": "https://www.re3data.org/repository/r3d100010846" }, { - "@id": "https://bioregistry.io/registry/plana" + "@id": "https://www.re3data.org/repository/r3d100010153" }, { - "@id": "https://bioregistry.io/registry/xpo" + "@id": "https://www.re3data.org/repository/r3d100010527" }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "https://www.re3data.org/repository/r3d100014165" }, { - "@id": "https://bioregistry.io/registry/pso" + "@id": "https://www.re3data.org/repository/r3d100012461" }, { - "@id": "https://bioregistry.io/registry/ecao" + "@id": "https://www.re3data.org/repository/r3d100012627" }, { - "@id": "https://bioregistry.io/registry/psdo" + "@id": "https://www.re3data.org/repository/r3d100011496" }, { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://www.re3data.org/repository/r3d100012189" }, { - "@id": "https://bioregistry.io/registry/clyh" + "@id": "https://www.re3data.org/repository/r3d100010424" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "https://www.re3data.org/repository/r3d100010539" }, { - "@id": "https://bioregistry.io/registry/ontoavida" + "@id": "https://www.re3data.org/repository/r3d100012850" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://www.re3data.org/repository/r3d100010626" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://www.re3data.org/repository/r3d100010375" }, { - "@id": "https://bioregistry.io/registry/ecto" + "@id": "https://www.re3data.org/repository/r3d100012755" }, { - "@id": "https://bioregistry.io/registry/proco" + "@id": "https://www.re3data.org/repository/r3d100013478" }, { - "@id": "https://bioregistry.io/registry/lepao" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://www.re3data.org/repository/r3d100010419" + }, { - "@value": "RO_proposed_relation" + "@id": "https://www.re3data.org/repository/r3d100012315" }, { - "@value": "oborel" + "@id": "https://www.re3data.org/repository/r3d100010804" }, { - "@value": "obo_rel" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/RO_0002533" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ro" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_360", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/cosmic", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COSMIC Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.re3data.org/repository/r3d100013413" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC" + "@id": "https://www.re3data.org/repository/r3d100012715" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic" + "@id": "https://www.re3data.org/repository/r3d100010650" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic" + "@id": "https://www.re3data.org/repository/r3d100011280" }, { - "@id": "https://fairsharing.org/FAIRsharing.s5zmbp" + "@id": "https://www.re3data.org/repository/r3d100012603" }, { - "@id": "https://registry.identifiers.org/registry/cosmic" + "@id": "https://www.re3data.org/repository/r3d100010880" }, { - "@id": "http://edamontology.org/data_3264" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.re3data.org/repository/r3d100010544" + }, { - "@value": "genetics" + "@id": "https://www.re3data.org/repository/r3d100010350" }, { - "@value": "biomedical science" + "@id": "https://www.re3data.org/repository/r3d100011646" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011232" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012362" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013314" + }, + { + "@id": "https://www.re3data.org/repository/r3d100014071" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012321" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010566" + }, + { + "@id": "https://www.re3data.org/repository/r3d100014113" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011527" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012458" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011166" + }, + { + "@id": "https://www.re3data.org/repository/r3d100000023" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012657" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010906" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010891" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010889" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010808" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012629" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010528" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012435" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011222" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012626" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010417" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013060" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012690" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011936" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012688" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010562" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010129" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011242" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010672" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010776" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012725" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013816" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011564" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012705" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010910" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011518" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010180" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010137" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010142" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011213" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010266" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013668" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011556" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012388" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012152" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010921" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013295" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011865" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012078" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013547" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010931" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010405" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011931" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013051" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012630" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013650" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013330" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010605" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010669" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010283" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012575" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012901" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010421" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012457" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010546" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010741" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013638" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010652" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010648" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012863" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012702" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013316" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012928" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010616" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010372" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010798" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010975" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010604" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013361" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011052" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013263" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011046" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011663" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013331" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010861" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010676" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013432" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010561" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012273" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010245" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012820" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010586" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013293" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010774" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013715" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012074" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010285" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011331" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010205" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010414" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012015" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012517" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011316" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012041" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011479" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010468" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010549" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010219" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011519" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010617" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011301" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011277" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012344" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012731" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010415" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010978" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012535" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012171" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010229" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011285" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010912" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011196" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011330" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011049" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011294" + }, + { + "@id": "https://www.re3data.org/repository/r3d100000039" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011906" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Registry of Research Data Repositories" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cancer.sanger.ac.uk/cosmic/" + "@value": "https://www.re3data.org" }, - "https://bioregistry.io/schema/#0000005": "BRAF", - "https://bioregistry.io/schema/#0000006": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=BRAF" + "https://bioregistry.io/schema/#0000005": { + "@value": "r3d100014165" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cosmic" + "https://bioregistry.io/schema/#0000006": { + "@value": "https://www.re3data.org/repository/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4221-7956" } }, { - "@id": "https://www.uniprot.org/database/DB-0256", + "@id": "http://aber-owl.net/ontology/IDODEN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm", + "@id": "http://agroportal.lirmm.fr/ontologies/EOL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop", + "@id": "http://agroportal.lirmm.fr/ontologies/GO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMRSE", + "@id": "http://aber-owl.net/ontology/ZECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.t9fvdn", + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/gxa.expt", + "@id": "http://aber-owl.net/ontology/ATOL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ero", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.", + "http://purl.org/dc/terms/description": "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GXA Expt" + "@value": "eagle-i resource ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gxa.expt" + "@id": "https://fairsharing.org/FAIRsharing.nwgynk" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt" + "@id": "http://aber-owl.net/ontology/ERO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT" + "@id": "https://bioregistry.io/metaregistry/biocontext/ERO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero" + }, + { + "@id": "https://www.obofoundry.org/ontology/ero" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ERO" + }, + { + "@id": "http://www.ontobee.org/ontology/ERO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/gxa/" + "@id": "https://open.med.harvard.edu/wiki/display/eaglei/Ontology" }, - "https://bioregistry.io/schema/#0000005": "E-MTAB-2037", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gxa/experiments/$1", - "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gxa/experiments/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "https://bioregistry.io/schema/#0000005": "0001655", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ERO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ero.owl" }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/gxa/experiments/E-MTAB-2037" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3734-1859" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ERO_", "https://bioregistry.io/schema/#0000029": { - "@value": "gxa.expt" - } - }, - { - "@id": "https://registry.identifiers.org/registry/panther.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "ero" } }, { - "@id": "https://fairsharing.org/FAIRsharing.27w8k0", + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc", + "@id": "https://registry.identifiers.org/registry/splash", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/pmdb", + "@id": "https://bioregistry.io/registry/snap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques.", + "http://purl.org/dc/terms/description": "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Model Database" + "@value": "Snapshot" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB" - }, - { - "@id": "https://registry.identifiers.org/registry/pmdb" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/snap" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.wkaakq" + "@value": "interaction" }, { - "@id": "https://registry.bio2kg.org/resource/pmdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structural biology" + "@value": "gene" }, { - "@value": "structure" + "@value": "pathway" }, { "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioinformatics.cineca.it/PMDB/" + "@id": "http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf" }, - "https://bioregistry.io/schema/#0000005": "PM0012345", - "https://bioregistry.io/schema/#0000006": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1", - "https://bioregistry.io/schema/#0000008": "^PM\\d{7}$", + "https://bioregistry.io/schema/#0000005": "Quality", + "https://bioregistry.io/schema/#0000006": "http://www.ifomis.org/bfo/1.1/snap#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=", + "https://bioregistry.io/schema/#0000024": "http://www.ifomis.org/bfo/1.1/snap#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=PM0012345" + "@id": "http://www.ifomis.org/bfo/1.1/snap#Quality" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pmdb" + "@value": "snap" } }, { - "@id": "https://orcid.org/0000-0002-8844-9165", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/fao.asfis" + "@id": "https://bioregistry.io/registry/sedml.format", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Damion Dooley" + "@value": "SED-ML data format" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "damion_dooley@sfu.ca" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/sedml.format" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sed-ml.org/" + }, + "https://bioregistry.io/schema/#0000005": "csv", + "https://bioregistry.io/schema/#0000006": "https://sed-ml.org/urns.html#format:$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\..*?)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://sed-ml.org/urns.html#format:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sed-ml.org/urns.html#format:csv" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sedml.format" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7vjq5t", + "@id": "https://bioregistry.io/registry/abm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Applied Biological Materials cell line products" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.abmgood.com/Cell-Biology.html" + }, + "https://bioregistry.io/schema/#0000005": "T0599", + "https://bioregistry.io/schema/#0000006": "https://www.abmgood.com/search?query=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.abmgood.com/search?query=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.abmgood.com/search?query=T0599" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "abm" } }, { - "@id": "http://edamontology.org/data_1182", + "@id": "https://www.re3data.org/repository/r3d100011242", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/arrayexpress", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/sheepqtldb", + "@id": "https://registry.identifiers.org/registry/combine.specifications", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN", + "@id": "https://registry.bio2kg.org/resource/interfil", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/goche", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/rebec", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Represent chemical entities having particular CHEBI roles", + "http://purl.org/dc/terms/description": "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/geneontology/go-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GO Chemicals" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "Brazilian Registry of Clinical Trials" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/geneontology/go-ontology" - }, - "https://bioregistry.io/schema/#0000005": "25512", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/goche/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/geneontology/go-ontology/master/src/ontology/imports/chebi_roles.owl" + "@id": "https://ensaiosclinicos.gov.br" }, + "https://bioregistry.io/schema/#0000005": "RBR-6qvdftm", + "https://bioregistry.io/schema/#0000006": "https://ensaiosclinicos.gov.br/rg/$1", + "https://bioregistry.io/schema/#0000008": "^RBR-\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "go.chemicals" - }, - { - "@value": "go.chemical" - }, - { - "@value": "go.chebi" - } - ], - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/goche/", + "https://bioregistry.io/schema/#0000024": "https://ensaiosclinicos.gov.br/rg/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/goche/25512" + "@id": "https://ensaiosclinicos.gov.br/rg/RBR-6qvdftm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "goche" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "rebec" } }, { - "@id": "https://bioregistry.io/registry/narcis", + "@id": "https://bioregistry.io/registry/co_365", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases.", + "http://purl.org/dc/terms/description": "developed by ICARDA - Dec 2018", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Academic Research and Collaborations Information System" + "@value": "Fababean ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.f63h4k" - }, - { - "@id": "https://registry.identifiers.org/registry/narcis" + "@id": "https://cropontology.org/ontology/CO_365" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_365" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.narcis.nl" + "@id": "https://cropontology.org/ontology/CO_365/Fababean" + }, + "https://bioregistry.io/schema/#0000005": "0000205", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_365:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_365/Fababean/owl" }, - "https://bioregistry.io/schema/#0000005": "oai:cwi.nl:4725", - "https://bioregistry.io/schema/#0000006": "http://www.narcis.nl/publication/RecordID/$1", - "https://bioregistry.io/schema/#0000008": "^oai\\:cwi\\.nl\\:\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.narcis.nl/publication/RecordID/", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N302b31c103cb46c785d4f40b23c155e9" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_365:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.narcis.nl/publication/RecordID/oai:cwi.nl:4725" + "@id": "https://cropontology.org/rdf/CO_365:0000205" }, "https://bioregistry.io/schema/#0000029": { - "@value": "narcis" + "@value": "co_365" } }, { - "@id": "https://registry.bio2kg.org/resource/wikipedia", + "@id": "_:N302b31c103cb46c785d4f40b23c155e9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ICARDA Ethiopia" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "http://www.wikidata.org/entity/P6245", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.obofoundry.org/ontology/po", + "@id": "https://bioregistry.io/registry/skm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stress Knowledge Map" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/skm" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.nib.si/eng/" + }, + "https://bioregistry.io/schema/#0000005": "rx00408", + "https://bioregistry.io/schema/#0000006": "https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary", + "https://bioregistry.io/schema/#0000008": "^rx[0-9]{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/skm:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://skm.nib.si/api/pss/reactions?reaction_id=rx00408&return_field=summary" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "skm" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE", + "@id": "https://fairsharing.org/FAIRsharing.phk7dd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/co_356", + "@id": "https://bioregistry.io/registry/pdbsum", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Grape Ontology including OIV and bioversity descriptors. INRA July 2017", + "http://purl.org/dc/terms/description": "PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vitis ontology" + "@value": "PDBsum; at-a-glance overview of macromolecular structures" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_356" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_356" + "@id": "https://www.uniprot.org/database/DB-0119" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356" + "@id": "https://registry.bio2kg.org/resource/pdbsum" }, { - "@id": "https://fairsharing.org/FAIRsharing.c7f4d7" + "@id": "https://fairsharing.org/FAIRsharing.7vjq5t" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "botany" + "@value": "protein" }, { - "@value": "life science" + "@value": "structural biology" }, { - "@value": "agriculture" + "@value": "interaction" }, { - "@value": "ontology" + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_356/Vitis" + "@id": "http://www.ebi.ac.uk/pdbsum" }, - "https://bioregistry.io/schema/#0000005": "4000027", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_356:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_356/Vitis/owl" + "https://bioregistry.io/schema/#0000005": "1kfv", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbsum/$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/pdb" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N5d7232cb5c7e4b6dbfd3e210772aaf35" + "@id": "https://orcid.org/0000-0001-5528-0087" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_356:", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbsum/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_356:4000027" + "@id": "https://www.ebi.ac.uk/pdbsum/1kfv" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_356" + "@value": "pdbsum" } }, { - "@id": "_:N5d7232cb5c7e4b6dbfd3e210772aaf35", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://www.obofoundry.org/ontology/pso", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome", + "@id": "https://bioportal.bioontology.org/ontologies/GAZ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP", + "@id": "http://www.ontobee.org/ontology/TAXRANK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ad9d85", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DERMO", + "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO", + "@id": "https://bartoc.org/en/node/1884", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/ccrid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "@id": "https://registry.identifiers.org/registry/gmd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-3207-2434", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Experimental Cell Resource Sharing Platform" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cellresource.cn" - }, - "https://bioregistry.io/schema/#0000005": "4201PAT-CCTCC00348", - "https://bioregistry.io/schema/#0000006": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=4201PAT-CCTCC00348" + "@value": "David Wishart" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ccrid" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "david.wishart@ualberta.ca" } }, { - "@id": "https://bioregistry.io/registry/spd", + "@id": "https://bioregistry.io/registry/reproduceme", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).", + "http://purl.org/dc/terms/description": "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/spider-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Spider Ontology" + "@value": "REPRODUCE-ME Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/spdo" - }, - { - "@id": "http://aber-owl.net/ontology/SPD" - }, - { - "@id": "https://www.obofoundry.org/ontology/spd" - }, - { - "@id": "http://www.ontobee.org/ontology/SPD" - }, - { - "@id": "http://www.wikidata.org/entity/P4537" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SPD" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.yecp83" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "anatomy" + "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME" }, { - "@value": "spider" + "@id": "http://aber-owl.net/ontology/REPRODUCE-ME" }, { - "@value": "life science" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://research.amnh.org/atol/files/" + "@id": "https://w3id.org/reproduceme/research" }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SPD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "MicrobeamManipulation", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/reproduceme#$1", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/spd.owl" + "@id": "https://sheeba-samuel.github.io/REPRODUCE-ME/doc/reproduce-me.xml" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0358-0130" + "@id": "https://orcid.org/0000-0002-7981-8504" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SPD_", + "https://bioregistry.io/schema/#0000024": "https://w3id.org/reproduceme#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SPD_0000001" + "@id": "https://w3id.org/reproduceme#MicrobeamManipulation" }, "https://bioregistry.io/schema/#0000029": { - "@value": "spd" + "@value": "reproduceme" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zmx7nn", + "@id": "https://registry.bio2kg.org/resource/molmovdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/paxdb.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels.", + "@id": "http://aber-owl.net/ontology/BAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PaxDb Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/paxdb.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pax-db.org/" - }, - "https://bioregistry.io/schema/#0000005": "977869", - "https://bioregistry.io/schema/#0000006": "http://pax-db.org/#!protein/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pax-db.org/#!protein/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pax-db.org/#!protein/977869" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "paxdb.protein" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/apd", + "@id": "https://registry.identifiers.org/registry/ark", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/eo", + "@id": "https://www.re3data.org/repository/r3d100011049", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/dpv", + "@id": "https://registry.bio2kg.org/resource/pmp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/GEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/clinvar", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/co_331", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/rebase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019", + "http://purl.org/dc/terms/description": "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sweet Potato ontology" + "@value": "REBASE Enzyme Number" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.4g5qcw" + "@id": "https://www.uniprot.org/database/DB-0089" }, { - "@id": "https://cropontology.org/ontology/CO_331" + "@id": "http://www.wikidata.org/entity/P4866" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331" + "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_331" + "@id": "https://www.re3data.org/repository/r3d100012171" + }, + { + "@id": "https://registry.bio2kg.org/resource/rebase" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9sb9qh" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase" + }, + { + "@id": "https://registry.identifiers.org/registry/rebase" + }, + { + "@id": "http://edamontology.org/data_2325" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "structure" }, { - "@value": "agriculture" + "@value": "genome" }, { - "@value": "ontology" + "@value": "small molecule" }, { - "@value": "botany" + "@value": "dna" + }, + { + "@value": "enzyme" + }, + { + "@value": "life science" + }, + { + "@value": "protein" + }, + { + "@value": "rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato" - }, - "https://bioregistry.io/schema/#0000005": "0000088", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_331:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato/owl" + "@id": "http://rebase.neb.com/rebase/" }, + "https://bioregistry.io/schema/#0000005": "101", + "https://bioregistry.io/schema/#0000006": "http://rebase.neb.com/rebase/enz/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0595-5271" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_331:", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/rebase:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_331:0000088" + "@id": "http://rebase.neb.com/rebase/enz/101.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_331" - } - }, - { - "@id": "http://edamontology.org/data_2700", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0002-1508-8469", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Daniel Gautheret" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "daniel.gautheret@u-psud.fr" + "@value": "rebase" } }, { - "@id": "https://fairsharing.org/FAIRsharing.j75srj", + "@id": "https://cropontology.org/ontology/CO_338", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000010", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "A download link for the given resource" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has download URL" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/lei", + "@id": "https://bioregistry.io/registry/nci.drug", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.", + "http://purl.org/dc/terms/description": "identifier of an entry in the NCI Drug Dictionary", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Global LEI Index" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/lei" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gleif.org/" - }, - "https://bioregistry.io/schema/#0000005": "HWUPKR0MPOU8FGXBT394", - "https://bioregistry.io/schema/#0000006": "https://www.gleif.org/lei/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.gleif.org/lei/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gleif.org/lei/HWUPKR0MPOU8FGXBT394" + "@value": "NCI Drug Dictionary ID" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lei" - } - }, - { - "@id": "https://registry.identifiers.org/registry/giardiadb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vmhreaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://edamontology.org/data_2578", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/panther.pthcmp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/panther" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PANTHER Pathway Component" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P11623" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp" - }, - { - "@id": "https://registry.identifiers.org/registry/panther.pthcmp" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pantherdb.org/" + "@id": "https://www.cancer.gov/publications/dictionaries/cancer-drug" }, - "https://bioregistry.io/schema/#0000005": "P00266", - "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1", - "https://bioregistry.io/schema/#0000008": "^(G|P|U|C|S)\\d{5}$", + "https://bioregistry.io/schema/#0000005": "beta-carotene", + "https://bioregistry.io/schema/#0000006": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=", + "https://bioregistry.io/schema/#0000024": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=P00266" + "@id": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/beta-carotene" }, "https://bioregistry.io/schema/#0000029": { - "@value": "panther.pthcmp" + "@value": "nci.drug" } }, { - "@id": "http://edamontology.org/data_1128", + "@id": "https://bioportal.bioontology.org/ontologies/VHOG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.WxI96O", + "@id": "https://www.obofoundry.org/ontology/hso", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH", + "@id": "http://aber-owl.net/ontology/MICRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM", + "@id": "https://registry.identifiers.org/registry/mw.project", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_1136", + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.v9n3gk", + "@id": "https://fairsharing.org/FAIRsharing.pqzyd5", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/virmirdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://aber-owl.net/ontology/FIDEO", + "@id": "https://registry.identifiers.org/registry/facebase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/dicom", + "@id": "https://bioregistry.io/registry/sfam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DICOM Controlled Terminology", + "http://purl.org/dc/terms/description": "Selventa legacy protein family namespace used with the Biological Expression Language", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DICOM Controlled Terminology" + "@value": "Selventa Families" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/DCM" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b7z8by" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom" - }, - { - "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" - }, - { - "@value": "biomedical science" + "@value": "selventa" }, { - "@value": "medicine" + "@value": "bel" }, { - "@value": "ontology" + "@value": "protein families" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html" - }, - "https://bioregistry.io/schema/#0000005": "109082", - "https://bioregistry.io/schema/#0000006": "http://dicom.nema.org/resources/ontology/DCM/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "ftp://medical.nema.org/MEDICAL/Dicom/Resources/Ontology/DCM/dcm.owl" + "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-protein-families.txt" }, + "https://bioregistry.io/schema/#0000005": "F0001", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/sfam/$1", + "https://bioregistry.io/schema/#0000008": "^F\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2406-1145" - }, - "https://bioregistry.io/schema/#0000024": "http://dicom.nema.org/resources/ontology/DCM/", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/sfam/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://dicom.nema.org/resources/ontology/DCM/109082" + "@id": "https://biopragmatics.github.io/providers/sfam/F0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dicom" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013432", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "sfam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kpbna7", + "@id": "https://www.obofoundry.org/ontology/chiro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://orcid.org/0000-0003-1058-2668", + "@id": "https://orcid.org/0000-0002-0816-7775", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Danielle Welter" + "@value": "Philipp Bucher" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dwelter.ontologist@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "Philipp.Bucher@sib.swiss" } }, { - "@id": "https://bartoc.org/en/node/1028", + "@id": "https://bioregistry.io/metaregistry/biocontext/dc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://orcid.org/0000-0002-3012-7446", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/openalex" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Daniel Himmelstein" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex", + "@id": "http://aber-owl.net/ontology/LBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/pgdso", + "@id": "https://bioregistry.io/metaregistry/biocontext/OAE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-6309-7327", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Nicolas Le Novere" + }, + { + "@value": "Nicolas Le Novère" + } + ], + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "n.lenovere@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/schema", + "@id": "https://bioregistry.io/registry/signaling-gateway", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond.", + "http://purl.org/dc/terms/description": "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "http://github.com/schemaorg/schemaorg" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Schema.org" + "@value": "Signaling Gateway" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema" - }, - { - "@id": "http://aber-owl.net/ontology/SCHEMAORG" + "@id": "https://registry.identifiers.org/registry/signaling-gateway" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA" + "@id": "https://registry.bio2kg.org/resource/signaling-gateway" }, { - "@id": "https://fairsharing.org/FAIRsharing.hzdzq8" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" + "@value": "pathway" }, { - "@value": "ontology" + "@value": "small molecule" }, { - "@value": "computer science" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://schema.org" - }, - "https://bioregistry.io/schema/#0000005": "Person", - "https://bioregistry.io/schema/#0000006": "https://schema.org/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://schema.org/version/latest/schemaorg-all-http.rdf" + "@id": "http://www.signaling-gateway.org/molecule" }, + "https://bioregistry.io/schema/#0000005": "A001094", + "https://bioregistry.io/schema/#0000006": "http://www.signaling-gateway.org/molecule/query?afcsid=$1", + "https://bioregistry.io/schema/#0000008": "^A\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N7cae4825d6284d579d128ee48b230336" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "schemaorg" - }, - "https://bioregistry.io/schema/#0000024": "https://schema.org/", + "https://bioregistry.io/schema/#0000024": "http://www.signaling-gateway.org/molecule/query?afcsid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://schema.org/Person" + "@id": "http://www.signaling-gateway.org/molecule/query?afcsid=A001094" }, "https://bioregistry.io/schema/#0000029": { - "@value": "schema" - } - }, - { - "@id": "_:N7cae4825d6284d579d128ee48b230336", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Josef Hardi" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "johardi@stanford.edu" - } - }, - { - "@id": "https://orcid.org/0000-0001-5256-8683", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Shur-Jen Wang" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sjwang@mcw.edu" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DRON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "signaling-gateway" } }, { - "@id": "https://fairsharing.org/FAIRsharing.7rngj0", + "@id": "https://fairsharing.org/FAIRsharing.w5ntfd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR", + "@id": "https://bioregistry.io/metaregistry/go/resolve/Wikipedia", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } @@ -78329,3139 +69967,3045 @@ } }, { - "@id": "https://orcid.org/0000-0001-9727-2544", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hans Ienasescu" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "haiiu@dtu.dk" - } - }, - { - "@id": "https://bioregistry.io/registry/fungorum", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for a fungus taxon in Index Fungorum", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Index Fungorum" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P1391" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.indexfungorum.org" - }, - "https://bioregistry.io/schema/#0000005": "154022", - "https://bioregistry.io/schema/#0000006": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=154022" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fungorum" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6375zh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y9x8wk", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ECTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1155", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5NhJFK", + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/unii", + "@id": "https://bioregistry.io/registry/co_336", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.", + "http://purl.org/dc/terms/description": "Soybean Trait Dictionary in template v5 - IITA - July 2015", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unique Ingredient Identifier" + "@value": "Soybean ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P652" + "@id": "https://fairsharing.org/FAIRsharing.j75srj" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNII" + "@id": "https://cropontology.org/ontology/CO_336" }, { - "@id": "https://registry.identifiers.org/registry/unii" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000563" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_336" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii" + "@value": "life science" + }, + { + "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://precision.fda.gov/uniisearch" + "@id": "https://cropontology.org/ontology/CO_336/Soybean" + }, + "https://bioregistry.io/schema/#0000005": "0000339", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_336:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_336/Soybean/owl" }, - "https://bioregistry.io/schema/#0000005": "3G6A5W338E", - "https://bioregistry.io/schema/#0000006": "https://precision.fda.gov/uniisearch/srs/unii/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://precision.fda.gov/uniisearch/srs/unii/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6020-5919" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_336:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://precision.fda.gov/uniisearch/srs/unii/3G6A5W338E" + "@id": "https://cropontology.org/rdf/CO_336:0000339" }, "https://bioregistry.io/schema/#0000029": { - "@value": "unii" + "@value": "co_336" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS", + "@id": "https://bioportal.bioontology.org/ontologies/DRON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.mqvqde", + "@id": "https://fairsharing.org/FAIRsharing.910c39", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/XL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/cordis.project", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CORDIS Project" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cordis.europa.eu/" - }, - "https://bioregistry.io/schema/#0000005": "817732", - "https://bioregistry.io/schema/#0000006": "https://cordis.europa.eu/project/id/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://cordis.europa.eu/project/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cordis.europa.eu/project/id/817732" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cordis.project" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/dcterms", + "@id": "https://bioregistry.io/registry/gsso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.", + "http://purl.org/dc/terms/description": "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Superraptor/GSSO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dublin Core Metadata Initiative Terms" + "@value": "Gender, Sex, and Sexual Orientation Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.9vtwjs" + "@id": "https://bioportal.bioontology.org/ontologies/GSSO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS" + "@id": "http://aber-owl.net/ontology/GSSO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms" + "@id": "http://www.ontobee.org/ontology/GSSO" }, { - "@id": "http://aber-owl.net/ontology/dcterms" + "@id": "https://registry.identifiers.org/registry/gsso" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms" + "@id": "https://www.obofoundry.org/ontology/gsso" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" + "@value": "obo" }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/" + "@id": "https://gsso.research.cchmc.org/" }, - "https://bioregistry.io/schema/#0000005": "title", - "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/terms/$1", + "https://bioregistry.io/schema/#0000005": "002368", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GSSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_terms.rdf" + "@id": "http://purl.obolibrary.org/obo/gsso.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nd772a1887b1e4e43ab904ab8cad89d95" - }, - "https://bioregistry.io/schema/#0000023": [ + "https://bioregistry.io/schema/#0000018": [ { - "@value": "dc.terms" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@value": "dct" + "@id": "https://bioregistry.io/registry/ontoavida" } ], - "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/terms/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8397-8810" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GSSO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/dc/terms/title" + "@id": "http://purl.obolibrary.org/obo/GSSO_002368" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dcterms" - } - }, - { - "@id": "_:Nd772a1887b1e4e43ab904ab8cad89d95", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michelle Futornick" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "futo@stanford.edu" + "@value": "gsso" } }, { - "@id": "https://registry.bio2kg.org/resource/hgvbase", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://edamontology.org/data_2766", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0002-0956-8634", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terry Hayamizu" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Terry.Hayamizu@jax.org" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/oslc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains.", + "@id": "http://www.wikidata.org/entity/P3201", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OASIS Open Services for Lifecycle Collaboration Core Vocabulary" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://open-services.net/ns/core" - }, - "https://bioregistry.io/schema/#0000005": "Property", - "https://bioregistry.io/schema/#0000006": "http://open-services.net/ns/core#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nbe5c01d384744deab6e86f31b600b4a5" - }, - "https://bioregistry.io/schema/#0000024": "http://open-services.net/ns/core#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://open-services.net/ns/core#Property" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oslc" - } - }, - { - "@id": "_:Nbe5c01d384744deab6e86f31b600b4a5", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jim Amsden" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jamsden@us.ibm.com" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://www.re3data.org/repository/r3d100012385", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc", + "@id": "https://registry.bio2kg.org/resource/yrc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/biorxiv", + "@id": "https://bioregistry.io/registry/peptideatlas", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The bioRxiv is a preprint server for biology", + "http://purl.org/dc/terms/description": "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "bioRxiv" + "@value": "PeptideAtlas" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P3951" + "@id": "https://fairsharing.org/FAIRsharing.dvyrsz" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "preprints" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas" }, { - "@value": "publishing" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biorxiv.org" - }, - "https://bioregistry.io/schema/#0000005": "2022.07.08.499378", - "https://bioregistry.io/schema/#0000006": "https://www.biorxiv.org/content/10.1101/$1", - "https://bioregistry.io/schema/#0000008": "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.biorxiv.org/content/10.1101/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.biorxiv.org/content/10.1101/2022.07.08.499378" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biorxiv" - } - }, - { - "@id": "https://bioregistry.io/registry/genetree", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeneTree" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE" + "@id": "http://edamontology.org/data_2626" }, { - "@id": "https://www.uniprot.org/database/DB-0162" + "@id": "https://registry.bio2kg.org/resource/peptideatlas" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree" + "@id": "https://www.re3data.org/repository/r3d100010889" }, { - "@id": "https://registry.bio2kg.org/resource/genetree" + "@id": "https://registry.identifiers.org/registry/peptideatlas" }, { - "@id": "https://registry.identifiers.org/registry/genetree" + "@id": "https://www.uniprot.org/database/DB-0071" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "protein" }, { - "@value": "protein" + "@value": "proteomics" }, { - "@value": "classification" + "@value": "structure" + }, + { + "@value": "mass spectrometry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ensembl.org/" + "@id": "http://www.peptideatlas.org/" }, - "https://bioregistry.io/schema/#0000005": "ENSGT00550000074763", - "https://bioregistry.io/schema/#0000006": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1", - "https://bioregistry.io/schema/#0000008": "^ENSGT\\d+$", + "https://bioregistry.io/schema/#0000005": "PAp00000009", + "https://bioregistry.io/schema/#0000006": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1", + "https://bioregistry.io/schema/#0000008": "^PAp[0-9]{8}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8732-0928" + }, + "https://bioregistry.io/schema/#0000024": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=ENSGT00550000074763" + "@id": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=PAp00000009" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genetree" + "@value": "peptideatlas" } }, { - "@id": "https://bioregistry.io/registry/plo", + "@id": "http://aber-owl.net/ontology/WBPHENOTYPE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bila", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plasmodium Life Cycle" + "@value": "Bilateria anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/plo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLO" + "@id": "https://www.obofoundry.org/ontology/bila" + }, + { + "@id": "https://registry.bio2kg.org/resource/4dxpress" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.eqgjeq" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BILA" } ], "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "anatomy" + }, { "@value": "obo" }, { - "@value": "ontology" + "@value": "gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sanger.ac.uk/Users/mb4/PLO/" + "@id": "http://4dx.embl.de/4DXpress" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/bila.owl" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLO_$1", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N00dd48a93db94d54a9aa2b15d889c7fd" + "@id": "https://orcid.org/0000-0002-1548-3290" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "plo" - } - }, - { - "@id": "_:N00dd48a93db94d54a9aa2b15d889c7fd", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matt Berriman" + "https://bioregistry.io/schema/#0000024": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=0000000" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mb4@sanger.ac.uk" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "https://bioregistry.io/schema/#0000029": { + "@value": "bila" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTO", + "@id": "https://registry.identifiers.org/registry/multicellds.cell_line", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc", + "@id": "https://www.obofoundry.org/ontology/vo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/cl", + "@id": "https://bioregistry.io/registry/cdao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.", + "http://purl.org/dc/terms/description": "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/cell-ontology" + "@id": "https://github.com/evoinfo/cdao" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Ontology" + "@value": "Comparative Data Analysis Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CL" + "@id": "http://agroportal.lirmm.fr/ontologies/CDAO" }, { - "@id": "https://registry.bio2kg.org/resource/cl" + "@id": "http://www.ontobee.org/ontology/CDAO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CL" + "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl" + "@id": "http://aber-owl.net/ontology/CDAO" }, { - "@id": "https://www.obofoundry.org/ontology/cl" + "@id": "https://fairsharing.org/FAIRsharing.kay31r" }, { - "@id": "https://fairsharing.org/FAIRsharing.j9y503" + "@id": "https://bioportal.bioontology.org/ontologies/CDAO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CL" + "@id": "https://www.obofoundry.org/ontology/cdao" }, { - "@id": "http://www.ontobee.org/ontology/CL" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL" + "@value": "evolutionary biology" }, { - "@id": "https://registry.identifiers.org/registry/cl" + "@value": "ontology" }, { - "@id": "http://aber-owl.net/ontology/CL" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl" + "@value": "bioinformatics" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CL" + "@value": "life science" }, - { - "@id": "http://www.wikidata.org/entity/P7963" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ { "@value": "obo" }, { - "@value": "cell" - }, - { - "@value": "ontology" - }, - { - "@value": "anatomy" + "@value": "phylogenetics" }, { - "@value": "life science" + "@value": "molecular biology" }, { - "@value": "cell biology" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://obophenotype.github.io/cell-ontology/" + "@id": "https://github.com/evoinfo/cdao" }, - "https://bioregistry.io/schema/#0000005": "0000062", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CL_$1", + "https://bioregistry.io/schema/#0000005": "0000072", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CDAO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cl.owl" + "@id": "http://purl.obolibrary.org/obo/cdao.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8688-6599" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CDAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CDAO_0000072" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cdao" + } + }, + { + "@id": "https://bioregistry.io/registry/multicellds.cell_line", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/registry/multicellds" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/go" - }, - { - "@id": "https://bioregistry.io/registry/pr" - }, - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/clo" - }, - { - "@id": "https://bioregistry.io/registry/ecao" - }, - { - "@id": "https://bioregistry.io/registry/ehdaa2" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/mco" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MultiCellDS Digital Cell Line" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/go" + "@id": "https://registry.identifiers.org/registry/multicellds.cell_line" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line" }, { - "@id": "https://bioregistry.io/registry/xpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9990-8331" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://multicellds.org/MultiCellDB.php" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CL_", + "https://bioregistry.io/schema/#0000005": "MCDS_L_0000000001", + "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", + "https://bioregistry.io/schema/#0000008": "^MCDS_L_[a-zA-Z0-9]{1,10}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CL_0000062" + "@id": "http://multicellds.org/MultiCellDB/MCDS_L_0000000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cl" + "@value": "multicellds.cell_line" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/CL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/symp", + "@id": "https://fairsharing.org/FAIRsharing.y5jcwa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme", + "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/stap", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/bioregistry.collection", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Manually curated collections of resources stored in the bioregistry", + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioregistry Collections" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioregistry.io/collection" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/collection/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/collection/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/collection/0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bioregistry.collection" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9dpd18", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/gmd.gcms", + "@id": "http://edamontology.org/data_1128", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt", + "@id": "http://agroportal.lirmm.fr/ontologies/EFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.identifiers.org/registry/gdc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/clo", + "@id": "https://registry.bio2kg.org/resource/genecards", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/chmo", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_325", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/OBCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/mixs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).", + "http://purl.org/dc/terms/description": "The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rsc-ontologies/rsc-cmo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Methods Ontology" + "@value": "Minimal Information about any Sequence" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO" - }, - { - "@id": "http://www.ontobee.org/ontology/CHMO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9j4wh2" - }, - { - "@id": "http://aber-owl.net/ontology/CHMO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHMO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo" - }, - { - "@id": "https://www.obofoundry.org/ontology/chmo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemistry" + "@id": "https://bioportal.bioontology.org/ontologies/MIXS" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.9aa0zp" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/MIXS" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/rsc-ontologies/rsc-cmo" + "@id": "https://www.gensc.org/pages/standards/all-terms.html" }, - "https://bioregistry.io/schema/#0000005": "0002902", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHMO_$1", + "https://bioregistry.io/schema/#0000005": "0001056", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/mixs/$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/chmo.owl" + "@id": "http://aber-owl.net/media/ontologies/MIXS/5/mixs.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" - }, - { - "@id": "https://bioregistry.io/registry/rbo" - } - ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5985-7429" + "@id": "https://orcid.org/0000-0001-8815-0078" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHMO_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/mixs/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CHMO_0002902" + "@id": "https://w3id.org/mixs/0001056" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chmo" + "@value": "mixs" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/mesh.2013", + "@id": "https://registry.bio2kg.org/resource/protclustdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.40j2vd", + "@id": "https://fairsharing.org/FAIRsharing.t19hpa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/ICEO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.eyjkws", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/pazar", + "@id": "https://registry.identifiers.org/registry/bioproject", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.uniprot.org/database/DB-0097", + "@id": "http://www.wikidata.org/entity/P1156", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/oboinowl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties", + "@id": "https://fairsharing.org/FAIRsharing.b5cc91", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/geneontology/go-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OBO in OWL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.aa0eat" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/geneontology/go-ontology/tree/master/contrib" - }, - "https://bioregistry.io/schema/#0000005": "hasDbXref", - "https://bioregistry.io/schema/#0000006": "http://www.geneontology.org/formats/oboInOwl#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "oboformat" - }, - { - "@value": "oio" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.geneontology.org/formats/oboInOwl#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.geneontology.org/formats/oboInOwl#hasDbXref" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oboinowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl", + "@id": "https://fairsharing.org/FAIRsharing.e4n3an", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/cell_biolabs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Biolabs cell line products" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cellbiolabs.com" - }, - "https://bioregistry.io/schema/#0000005": "AKR-270", - "https://bioregistry.io/schema/#0000006": "https://www.cellbiolabs.com/search?keywords=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.cellbiolabs.com/search?keywords=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cellbiolabs.com/search?keywords=AKR-270" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cell_biolabs" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/xenbase", + "@id": "https://www.obofoundry.org/ontology/iceo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.anpj91", + "@id": "https://bioportal.bioontology.org/ontologies/FALDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://aber-owl.net/ontology/NCBITAXON", + "@id": "https://registry.identifiers.org/registry/aceview.worm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0002-7558-2880", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jesualdo Tomás Fernández-Breis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jfernand@um.es" + "@id": "https://fairsharing.org/FAIRsharing.yqn857", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/ICD10", + "@id": "http://aber-owl.net/ontology/MF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/enzo", + "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/gmelin", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Enzo Life Sciences is an antibody vendor.", + "http://purl.org/dc/terms/description": "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Enzo Life Sciences" + "@value": "Gmelins Handbuch der anorganischen Chemie" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "antibodies" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "vendor" + "@id": "http://www.wikidata.org/entity/P1578" }, { - "@value": "life sciences" + "@id": "http://edamontology.org/data_1004" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.enzolifesciences.com" + "@id": "https://link.springer.com/bookseries/562" }, - "https://bioregistry.io/schema/#0000005": "ALX-210-175", - "https://bioregistry.io/schema/#0000006": "https://www.enzolifesciences.com/$1", + "https://bioregistry.io/schema/#0000005": "1466", + "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]{3,6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "Enzo Life Sciences" - }, - "https://bioregistry.io/schema/#0000024": "https://www.enzolifesciences.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.enzolifesciences.com/ALX-210-175" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "enzo" + "@value": "gmelin" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6yNXYK", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/diseaseclass", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/epio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Legacy disease classes that later became MONDO", + "http://purl.org/dc/terms/description": "A application driven Epilepsy Ontology with official terms from the ILAE.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SCAI-BIO/EpilepsyOntology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Disease Class" + "@value": "Epilepsy Ontology" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/epio" + }, + { + "@id": "http://www.ontobee.org/ontology/EPIO" + }, + { + "@id": "http://aber-owl.net/ontology/EPIO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EPIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SCAI-BIO/EpilepsyOntology" }, - "https://bioregistry.io/schema/#0000005": "0000598", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/diseaseclass/$1", + "https://bioregistry.io/schema/#0000005": "0000011", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EPIO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo" + "@id": "http://purl.obolibrary.org/obo/epio.owl" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/efo" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/bfo" }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/diseaseclass/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9896-3531" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EPIO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/diseaseclass/0000598" + "@id": "http://purl.obolibrary.org/obo/EPIO_0000011" }, "https://bioregistry.io/schema/#0000029": { - "@value": "diseaseclass" - } - }, - { - "@id": "http://aber-owl.net/ontology/EDDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ge1c3p", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013330", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "epio" } }, { - "@id": "http://aber-owl.net/ontology/FBDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0002-0358-0130", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Martin Ramirez" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ramirez@macn.gov.ar" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/LBO", + "@id": "https://bioregistry.io/registry/rouge", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rodent Unidentified Gene-Encoded Large Proteins" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/rouge" + }, + { + "@id": "https://registry.identifiers.org/registry/rouge" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vdbagq" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge" + }, + { + "@id": "https://www.uniprot.org/database/DB-0092" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "dna" + }, + { + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.kazusa.or.jp/rouge/" + }, + "https://bioregistry.io/schema/#0000005": "mKIAA4200", + "https://bioregistry.io/schema/#0000006": "https://www.kazusa.or.jp/rouge/gfpage/$1", + "https://bioregistry.io/schema/#0000008": "^m\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.kazusa.or.jp/rouge/gfpage/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.kazusa.or.jp/rouge/gfpage/mKIAA4200" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rouge" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RGD", + "@id": "https://bioportal.bioontology.org/ontologies/LIPRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/sheepqtldb", + "@id": "http://aber-owl.net/ontology/ITO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/lipidbank", + "@id": "https://bioregistry.io/registry/meddra", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.", + "http://purl.org/dc/terms/description": "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LipidBank" + "@value": "Medical Dictionary for Regulatory Activities Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/lipidbank" + "@id": "https://registry.identifiers.org/registry/meddra" }, { - "@id": "http://edamontology.org/data_2665" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163" }, { - "@id": "https://fairsharing.org/FAIRsharing.bdn9br" + "@id": "https://fairsharing.org/FAIRsharing.ad3137" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK" + "@id": "https://bartoc.org/en/node/1237" }, { - "@id": "https://registry.identifiers.org/registry/lipidbank" + "@id": "http://www.wikidata.org/entity/P3201" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA" + }, + { + "@id": "http://aber-owl.net/ontology/MEDDRA" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "molecule" + "@value": "medicine" }, { - "@value": "structure" + "@value": "biomedical science" }, { - "@value": "lipid" + "@value": "ontology" }, { - "@value": "life science" + "@value": "preclinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lipidbank.jp/index.html" + "@id": "http://bioportal.bioontology.org/ontologies/MEDDRA" }, - "https://bioregistry.io/schema/#0000005": "BBA0001", - "https://bioregistry.io/schema/#0000006": "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+\\d+$", + "https://bioregistry.io/schema/#0000005": "10015919", + "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://lipidbank.jp/cgi-bin/detail.cgi?id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N753c4de613d34f5896c1c13730649c75" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "MEDRA" + }, + { + "@value": "MeDRA" + }, + { + "@value": "MedDRA" + }, + { + "@value": "Medical Dictionary for Regulatory Activities" + } + ], + "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://lipidbank.jp/cgi-bin/detail.cgi?id=BBA0001" + "@id": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=10015919" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lipidbank" + "@value": "meddra" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2ajtcf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "_:N753c4de613d34f5896c1c13730649c75", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MedDRA MSSO" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mssohelp@meddra.org" } }, { - "@id": "https://www.re3data.org/repository/r3d100010283", + "@id": "https://registry.identifiers.org/registry/protclustdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.cz9cnp", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/ror", + "@id": "https://bioregistry.io/metaregistry/biocontext/RO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/spbase", + "@id": "https://bioregistry.io/registry/ucsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.", + "http://purl.org/dc/terms/description": "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SpBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/spbase" + "@value": "UCSC Genome Browser" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genome" + "@id": "https://www.uniprot.org/database/DB-0139" }, { - "@value": "rna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://spbase.org" - }, - "https://bioregistry.io/schema/#0000005": "SPU_000001", - "https://bioregistry.io/schema/#0000006": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=SPU_000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "spbase" - } - }, - { - "@id": "https://bioregistry.io/registry/edam.format", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://www.wikidata.org/entity/P2576" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/edamontology/edamontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Format" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://edamontology.org" - }, - "https://bioregistry.io/schema/#0000005": "1915", - "https://bioregistry.io/schema/#0000006": "http://edamontology.org/format_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" + "@id": "https://genome.ucsc.edu/" }, + "https://bioregistry.io/schema/#0000005": "uc001rvw.5", + "https://bioregistry.io/schema/#0000006": "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" - }, - "https://bioregistry.io/schema/#0000024": "http://edamontology.org/format_", + "https://bioregistry.io/schema/#0000024": "ftp://hgdownload.cse.ucsc.edu/goldenPath/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://edamontology.org/format_1915" + "@id": "ftp://hgdownload.cse.ucsc.edu/goldenPath/uc001rvw.5" }, "https://bioregistry.io/schema/#0000029": { - "@value": "edam.format" + "@value": "ucsc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.q47I0t", + "@id": "http://edamontology.org/data_2367", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.obofoundry.org/ontology/mi", + "@id": "https://registry.identifiers.org/registry/opm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.vwc6bd", + "@id": "http://edamontology.org/data_2741", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-2212-4771", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Surjeet Kumar Arya" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "surjeet.arya@uky.edu" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4shj9c", + "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/unipathway.reaction", + "@id": "https://bioregistry.io/registry/aio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.", + "http://purl.org/dc/terms/description": "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/berkeleybop" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniPathway Reaction" + "@value": "The Artificial Intelligence Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/unipathway.reaction" + "@id": "https://bioportal.bioontology.org/ontologies/AIO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION" + "@id": "https://fairsharing.org/FAIRsharing.8d6247" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction" + "@id": "http://aber-owl.net/ontology/AIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "artificial intelligence" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway" + "@id": "https://github.com/berkeleybop/artificial-intelligence-ontology" + }, + "https://bioregistry.io/schema/#0000005": "Causal_Graphical_Model", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/aio/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl" }, - "https://bioregistry.io/schema/#0000005": "UCR00226", - "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1", - "https://bioregistry.io/schema/#0000008": "^UCR\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8175-045X" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0001-9439-5346" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/aio/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=UCR00226" + "@id": "https://w3id.org/aio/Causal_Graphical_Model" }, "https://bioregistry.io/schema/#0000029": { - "@value": "unipathway.reaction" + "@value": "aio" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/hog", + "@id": "https://bioregistry.io/registry/ecyano.rule", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/ecyano" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Homologous Organ Groups" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "E-cyanobacterium rule" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE" + }, + { + "@id": "https://registry.identifiers.org/registry/ecyano.rule" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships" - }, - "https://bioregistry.io/schema/#0000005": "0000255", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/hog/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "ftp://ftp.bgee.org/general/ontologies/HOG.obo" + "@id": "http://www.e-cyanobacterium.org/bcs/rule/" }, + "https://bioregistry.io/schema/#0000005": "56", + "https://bioregistry.io/schema/#0000006": "https://e-cyanobacterium.org/bcs/rule/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/hog/", + "https://bioregistry.io/schema/#0000024": "https://e-cyanobacterium.org/bcs/rule/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/hog/0000255" + "@id": "https://e-cyanobacterium.org/bcs/rule/56" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hog" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/vso", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "ecyano.rule" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/SALMON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/imgt.ligm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS", + "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/opb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase", + "@id": "https://bioregistry.io/registry/biolegend", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioLegend is a life sciences supply vendor.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioLegend" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "reagents" + }, + { + "@value": "vendor" + }, + { + "@value": "antibodies" + }, + { + "@value": "life sciences" + }, + { + "@value": "assays" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.biolegend.com" + }, + "https://bioregistry.io/schema/#0000005": "3403", + "https://bioregistry.io/schema/#0000006": "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.biolegend.com/Default.aspx?ID=6664&productid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.biolegend.com/Default.aspx?ID=6664&productid=3403" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biolegend" } }, { - "@id": "https://registry.identifiers.org/registry/gmd.analyte", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.identifiers.org/registry/multicellds.snapshot", + "@id": "https://registry.bio2kg.org/resource/pass2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/obi", + "@id": "http://www.ontobee.org/ontology/HAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/nlx.br", + "@id": "https://bioregistry.io/registry/insdc.gca", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/nif" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "http://purl.org/dc/terms/description": "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Brain Regions" + "@value": "Genome assembly database - INSDC accessions" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "brain regions" + "@id": "https://registry.identifiers.org/registry/insdc.gca" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA" }, { - "@value": "neuroscience" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://www.ebi.ac.uk/ena/browse/genome-assembly-database" }, - "https://bioregistry.io/schema/#0000005": "145", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "GCA_000155495.1", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/data/view/$1", + "https://bioregistry.io/schema/#0000008": "^GCA_[0-9]{9}(\\.[0-9]+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXBR" + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/ncbi.assembly" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_br_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/data/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_br_145" + "@id": "https://www.ebi.ac.uk/ena/data/view/GCA_000155495.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.br" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c86z66", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "insdc.gca" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE", + "@id": "http://www.ontobee.org/ontology/CMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://orcid.org/0000-0002-9611-1279", + "@id": "https://orcid.org/0000-0002-2916-3423", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Erik Segerdell" + "@value": "Maria Gould" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Erik.Segerdell@cchmc.org" - } - }, - { - "@id": "http://aber-owl.net/ontology/SBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "maria.gould@ucop.edu" } }, { - "@id": "https://bioregistry.io/registry/ena.embl", + "@id": "https://bioregistry.io/registry/scdo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.", + "http://purl.org/dc/terms/description": "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/scdodev/scdo-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Nucleotide Archive" + "@value": "Sickle Cell Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0022" + "@id": "https://www.obofoundry.org/ontology/scdo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl" + "@id": "https://fairsharing.org/FAIRsharing.kkq6pw" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL" + "@id": "http://www.ontobee.org/ontology/SCDO" }, { - "@id": "https://registry.identifiers.org/registry/ena.embl" + "@id": "https://bioportal.bioontology.org/ontologies/SCDO" }, { - "@id": "https://www.re3data.org/repository/r3d100010527" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo" }, { - "@id": "https://fairsharing.org/FAIRsharing.dj8nt8" - }, + "@id": "http://aber-owl.net/ontology/SCDO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/ena" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA" + "@value": "biomedical science" + }, + { + "@value": "obo" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://scdontology.h3abionet.org/" + }, + "https://bioregistry.io/schema/#0000005": "0000728", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SCDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/scdo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "functional genomics" + "@id": "https://bioregistry.io/registry/eupath" }, { - "@value": "data management" + "@id": "https://bioregistry.io/registry/idomal" }, { - "@value": "metagenomics" + "@id": "https://bioregistry.io/registry/exo" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/registry/uo" }, { - "@value": "dna" + "@id": "https://bioregistry.io/registry/gsso" }, { - "@value": "transcriptomics" + "@id": "https://bioregistry.io/registry/envo" }, { - "@value": "biodiversity" + "@id": "https://bioregistry.io/registry/nbo" }, { - "@value": "genomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/ena/" - }, - "https://bioregistry.io/schema/#0000005": "BN000065", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/browser/view/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/insdc.run" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7954-7057" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ena" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/browser/view/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ena/browser/view/BN000065" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ena.embl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biogrid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/datanator.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/apollosv" }, { - "@id": "https://bioregistry.io/registry/datanator" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Datanator Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/datanator.gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://datanator.info/" - }, - "https://bioregistry.io/schema/#0000005": "K00973", - "https://bioregistry.io/schema/#0000006": "https://www.datanator.info/gene/$1", - "https://bioregistry.io/schema/#0000008": "^K[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.datanator.info/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.datanator.info/gene/K00973" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "datanator.gene" - } - }, - { - "@id": "https://bioregistry.io/registry/cas", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CAS Registry Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas" + "@id": "https://bioregistry.io/registry/chmo" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000446" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7" + "@id": "https://bioregistry.io/registry/stato" }, { - "@id": "https://registry.identifiers.org/registry/cas" + "@id": "https://bioregistry.io/registry/gaz" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CAS" + "@id": "https://bioregistry.io/registry/obi" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61" + "@id": "https://bioregistry.io/registry/doid" }, { - "@id": "https://registry.bio2kg.org/resource/cas" + "@id": "https://bioregistry.io/registry/ido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAS" + "@id": "https://bioregistry.io/registry/aro" }, { - "@id": "http://www.wikidata.org/entity/P231" + "@id": "https://bioregistry.io/registry/sbo" }, { - "@id": "http://edamontology.org/data_1002" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "chemical" + "@id": "https://bioregistry.io/registry/vt" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/symp" }, { - "@value": "cheminformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://commonchemistry.cas.org/" - }, - "https://bioregistry.io/schema/#0000005": "50-00-0", - "https://bioregistry.io/schema/#0000006": "https://commonchemistry.cas.org/detail?cas_rn=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,7}\\-\\d{2}\\-\\d$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "CAS_RN" + "@id": "https://bioregistry.io/registry/duo" }, { - "@value": "CASID" + "@id": "https://bioregistry.io/registry/ncit" }, { - "@value": "cas_id" + "@id": "https://bioregistry.io/registry/ico" }, { - "@value": "SECONDARY_CAS_RN" - } - ], - "https://bioregistry.io/schema/#0000024": "https://commonchemistry.cas.org/detail?cas_rn=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://commonchemistry.cas.org/detail?cas_rn=50-00-0" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cas" - } - }, - { - "@id": "https://bioregistry.io/registry/biosystems", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioSystems" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/biosystems" + "@id": "https://bioregistry.io/registry/opmi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems" + "@id": "https://bioregistry.io/registry/cmo" }, { - "@id": "https://fairsharing.org/FAIRsharing.w2eeqr" + "@id": "https://bioregistry.io/registry/hp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS" + "@id": "https://bioregistry.io/registry/pr" }, { - "@id": "https://www.re3data.org/repository/r3d100011033" + "@id": "https://bioregistry.io/registry/dron" }, { - "@id": "https://registry.bio2kg.org/resource/biosystems" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "molecules" + "@id": "https://bioregistry.io/registry/ogms" }, { - "@value": "pathways" + "@id": "https://bioregistry.io/registry/vo" }, { - "@value": "systems biology" + "@id": "https://bioregistry.io/registry/mp" }, { - "@value": "biology" + "@id": "https://bioregistry.io/registry/hsapdv" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/biosystems/" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2193-0704" }, - "https://bioregistry.io/schema/#0000005": "001", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/biosystems/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/biosystems/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SCDO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/biosystems/001" + "@id": "http://purl.obolibrary.org/obo/SCDO_0000728" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biosystems" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b4sa0w", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SWO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/arachnoserver", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "scdo" } }, { - "@id": "https://registry.bio2kg.org/resource/pepbank", + "@id": "https://registry.bio2kg.org/resource/taxonomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/mfoem", + "@id": "https://fairsharing.org/FAIRsharing.xhwrnr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref", + "@id": "https://www.re3data.org/repository/r3d100010648", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.bio2kg.org/resource/ratmap", + "@id": "https://registry.bio2kg.org/resource/dip", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/glytoucan", + "@id": "https://bioregistry.io/registry/mint", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.", + "http://purl.org/dc/terms/description": "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlyTouCan" + "@value": "Molecular Interaction Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/glytoucan" + "@id": "https://www.uniprot.org/database/DB-0158" }, { - "@id": "https://www.re3data.org/repository/r3d100012388" + "@id": "https://fairsharing.org/FAIRsharing.2bdvmk" }, { - "@id": "https://fairsharing.org/FAIRsharing.5Pze7l" + "@id": "https://registry.identifiers.org/registry/mint" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN" + "@id": "https://registry.bio2kg.org/resource/mint" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MINT" + }, + { + "@id": "http://edamontology.org/data_2615" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010414" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "glycomics" + "@value": "life science" }, { - "@value": "structural biology" + "@value": "protein" + }, + { + "@value": "proteomics" + }, + { + "@value": "interaction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://glytoucan.org" + "@id": "https://mint.bio.uniroma2.it" }, - "https://bioregistry.io/schema/#0000005": "G00054MO", - "https://bioregistry.io/schema/#0000006": "https://glytoucan.org/Structures/Glycans/$1", - "https://bioregistry.io/schema/#0000008": "^G[0-9]{5}[A-Z]{2}$", + "https://bioregistry.io/schema/#0000005": "6978836", + "https://bioregistry.io/schema/#0000006": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1", + "https://bioregistry.io/schema/#0000008": "^\\d{1,7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://glytoucan.org/Structures/Glycans/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5084-9000" + }, + "https://bioregistry.io/schema/#0000024": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-", "https://bioregistry.io/schema/#0000027": { - "@id": "https://glytoucan.org/Structures/Glycans/G00054MO" + "@id": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-6978836" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glytoucan" + "@value": "mint" } }, { - "@id": "http://edamontology.org/data_2658", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/collection/0000002", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://www.re3data.org/repository/r3d100010808", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/pubmed", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) in BioContext." + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubMed" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/skosxl" + "@id": "https://registry.bio2kg.org/resource/pubmed" }, { - "@id": "https://bioregistry.io/registry/bibo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMID" }, { - "@id": "https://bioregistry.io/registry/skos" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED" }, { - "@id": "https://bioregistry.io/registry/dctypes" + "@id": "http://edamontology.org/data_1187" }, { - "@id": "https://bioregistry.io/registry/pav" + "@id": "https://fairsharing.org/FAIRsharing.a5sv8m" }, { - "@id": "https://bioregistry.io/registry/rdf" + "@id": "https://semanticscience.org/resource/CHEMINF_000302" }, { - "@id": "https://bioregistry.io/registry/void" + "@id": "https://registry.identifiers.org/registry/pubmed" }, { - "@id": "https://bioregistry.io/registry/faldo" + "@id": "http://www.wikidata.org/entity/P698" }, { - "@id": "https://bioregistry.io/registry/xsd" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed" }, { - "@id": "https://bioregistry.io/registry/swrl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "earth science" }, { - "@id": "https://bioregistry.io/registry/schema" + "@value": "environmental science" }, { - "@id": "https://bioregistry.io/registry/owl" + "@value": "traditional medicine" }, { - "@id": "https://bioregistry.io/registry/ac" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/oslc" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/idot" + "@value": "bibliography" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/PubMed/" + }, + "https://bioregistry.io/schema/#0000005": "16333295", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/pubmed/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1798-9797" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "PubMed" }, { - "@id": "https://bioregistry.io/registry/dcterms" + "@value": "PMID" }, { - "@id": "https://bioregistry.io/registry/shex" + "@value": "MEDLINE" }, { - "@id": "https://bioregistry.io/registry/sh" + "@value": "pmid" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/pubmed/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/pubmed/16333295" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pubmed" + } + }, + { + "@id": "https://bioregistry.io/registry/myco.lepra", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MycoBrowser leprae" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra" }, { - "@id": "https://bioregistry.io/registry/oboinowl" + "@id": "https://registry.bio2kg.org/resource/myco.lepra" }, { - "@id": "https://bioregistry.io/registry/foaf" + "@id": "https://registry.identifiers.org/registry/myco.lepra" }, { - "@id": "https://bioregistry.io/registry/oa" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "sequence" }, { - "@id": "https://bioregistry.io/registry/qudt" + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://mycobrowser.epfl.ch/leprosy.html" + }, + "https://bioregistry.io/schema/#0000005": "ML0224", + "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1", + "https://bioregistry.io/schema/#0000008": "^ML\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=ML0224" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "myco.lepra" + } + }, + { + "@id": "https://bioregistry.io/registry/mondo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/monarch-initiative/mondo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mondo Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/MONDO" }, { - "@id": "https://bioregistry.io/registry/dc" + "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO" }, { - "@id": "https://bioregistry.io/registry/vann" + "@id": "http://www.wikidata.org/entity/P5270" }, { - "@id": "https://bioregistry.io/registry/qb" + "@id": "https://fairsharing.org/FAIRsharing.b2979t" }, { - "@id": "https://bioregistry.io/registry/rdfs" + "@id": "https://www.obofoundry.org/ontology/mondo" }, { - "@id": "https://bioregistry.io/registry/prov" + "@id": "http://aber-owl.net/ontology/MONDO" }, { - "@id": "https://bioregistry.io/registry/dcat" + "@id": "http://www.ontobee.org/ontology/MONDO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Semantic Web Context" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cst.ab", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "infectious disease medicine" + }, + { + "@value": "medicine" + }, + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://monarch-initiative.github.io/mondo" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MONDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mondo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5208-3432" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MONDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MONDO_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mondo" } }, { - "@id": "https://bioregistry.io/registry/imotdb", + "@id": "https://bioregistry.io/registry/protcom", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members.", + "http://purl.org/dc/terms/description": "This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Spatially Interacting Motifs in Proteins" + "@value": "Database of protein-protein complexes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/imotdb" + "@id": "https://registry.bio2kg.org/resource/protcom" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "structure" }, { - "@value": "interaction" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://caps.ncbs.res.in/imotdb/" + "@id": "http://www.ces.clemson.edu/compbio/protcom" }, - "https://bioregistry.io/schema/#0000005": "53784", - "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1", + "https://bioregistry.io/schema/#0000005": "12e8LH", + "https://bioregistry.io/schema/#0000006": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1", "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=", + "https://bioregistry.io/schema/#0000024": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=53784" + "@id": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=12e8LH" }, "https://bioregistry.io/schema/#0000029": { - "@value": "imotdb" + "@value": "protcom" } }, { - "@id": "https://registry.bio2kg.org/resource/emap.ontology", + "@id": "http://edamontology.org/data_3103", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.obofoundry.org/ontology/mfmo", + "@id": "https://registry.identifiers.org/registry/tair.name", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/neurolex", + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bartoc.org/en/node/720", + "@id": "https://bioregistry.io/registry/neurovault.image", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuroVault Image" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image" + }, + { + "@id": "https://registry.identifiers.org/registry/neurovault.image" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://neurovault.org" + }, + "https://bioregistry.io/schema/#0000005": "58788", + "https://bioregistry.io/schema/#0000006": "https://neurovault.org/images/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://neurovault.org/images/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://neurovault.org/images/58788" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "neurovault.image" } }, { - "@id": "https://orcid.org/0000-0001-7941-2961", + "@id": "https://bioregistry.io/registry/crisprdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Leigh Carmody" + "@value": "CRISPRdb" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Leigh.Carmody@jax.org" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.7sfedh" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb" + }, + { + "@id": "https://registry.identifiers.org/registry/crisprdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://crispr.i2bc.paris-saclay.fr/" + }, + "https://bioregistry.io/schema/#0000005": "551115", + "https://bioregistry.io/schema/#0000006": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8951-466X" + }, + "https://bioregistry.io/schema/#0000024": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=551115" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "crisprdb" } }, { - "@id": "https://registry.identifiers.org/registry/vfdb.genus", + "@id": "https://www.obofoundry.org/ontology/fma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.re3data.org/repository/r3d100013650", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/OGSF", + "@id": "https://bioregistry.io/registry/gmd.analyte", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Golm Metabolome Database Analyte" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/gmd.analyte" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://gmd.mpimp-golm.mpg.de/" + }, + "https://bioregistry.io/schema/#0000005": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", + "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Analytes/$1", + "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/Analytes/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://gmd.mpimp-golm.mpg.de/Analytes/4f0fa9b6-514f-4ff4-98cc-0009bc08eb80" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gmd.analyte" } }, { - "@id": "https://registry.bio2kg.org/resource/miriam.resource", + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9091d9", + "@id": "https://bioportal.bioontology.org/ontologies/SWEET", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/swissmodel", + "@id": "http://www.ontobee.org/ontology/IAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/gpcrdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/fobi", + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mf", + "@id": "https://bioregistry.io/registry/pkdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.", + "http://purl.org/dc/terms/description": "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/jannahastings/mental-functioning-ontology" + "@id": "https://github.com/matthiaskoenig/pkdb/issues" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mental Functioning Ontology" + "@value": "PK-DB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf" - }, - { - "@id": "https://www.obofoundry.org/ontology/mf" + "@id": "https://registry.identifiers.org/registry/pkdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.4gm9gt" - }, + "@id": "https://fairsharing.org/FAIRsharing.AYegqK" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://www.ontobee.org/ontology/MF" + "@value": "clinical veterinary medicine" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MF" + "@value": "pharmacology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MF" + "@value": "personalized medicine" }, { - "@id": "http://aber-owl.net/ontology/MF" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" + "@value": "pharmacogenomics" }, { - "@value": "biomedical science" + "@value": "preclinical studies" }, { - "@value": "cognitive neuroscience" + "@value": "life science" }, { - "@value": "obo" + "@value": "clinical studies" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/jannahastings/mental-functioning-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000091", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MF_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mf.owl" + "@id": "https://www.hu-berlin.de/?set_language=en&cl=en" }, + "https://bioregistry.io/schema/#0000005": "PKDB00198", + "https://bioregistry.io/schema/#0000006": "https://pk-db.com/data/$1", + "https://bioregistry.io/schema/#0000008": "^PKDB[0-9]{5}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3469-4923" + "@id": "https://orcid.org/0000-0003-1725-179X" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MF_", + "https://bioregistry.io/schema/#0000024": "https://pk-db.com/data/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MF_0000091" + "@id": "https://pk-db.com/data/PKDB00198" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mf" + "@value": "pkdb" } }, { - "@id": "https://registry.identifiers.org/registry/multicellds.collection", + "@id": "https://registry.identifiers.org/registry/fcb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bartoc.org/en/node/20052", + "@id": "https://fairsharing.org/FAIRsharing.s19src", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2", + "@id": "https://bioportal.bioontology.org/ontologies/EPIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/fsnp", + "@id": "https://bioregistry.io/registry/nucc.taxonomy", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Uniform Claim Committee Taxonomy" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://taxonomy.nucc.org" + }, + "https://bioregistry.io/schema/#0000005": "207LH0002X", + "https://bioregistry.io/schema/#0000008": "^\\d{3}\\w(\\w|\\d_)\\d{4}X$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "nucc.taxonomy" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO", + "@id": "https://registry.bio2kg.org/resource/mirbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/genenote", + "@id": "https://fairsharing.org/FAIRsharing.XykycZ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/jcsd", + "@id": "https://bioregistry.io/registry/agsd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).", + "http://purl.org/dc/terms/description": "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Japan Chemical Substance Dictionary" + "@value": "Animal Genome Size Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/jcsd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD" + "@id": "https://fairsharing.org/FAIRsharing.efp5v2" }, { - "@id": "https://registry.bio2kg.org/resource/jcsd" + "@id": "https://registry.bio2kg.org/resource/agsd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd" + "@id": "https://www.re3data.org/repository/r3d100012517" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "chemical" + "@value": "dna" }, { - "@value": "structure" + "@value": "life science" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://jglobal.jst.go.jp/en/" + "@id": "http://www.genomesize.com" }, - "https://bioregistry.io/schema/#0000005": "J55.713G", - "https://bioregistry.io/schema/#0000006": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1", - "https://bioregistry.io/schema/#0000008": "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$", + "https://bioregistry.io/schema/#0000005": "4779", + "https://bioregistry.io/schema/#0000006": "http://www.genomesize.com/result_species.php?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.genomesize.com/result_species.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J55.713G" + "@id": "http://www.genomesize.com/result_species.php?id=4779" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jcsd" + "@value": "agsd" } }, { - "@id": "https://www.re3data.org/repository/r3d100010229", + "@id": "https://fairsharing.org/FAIRsharing.zv11j3", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P2410", + "@id": "https://www.re3data.org/repository/r3d100011521", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/mimodb", + "@id": "https://www.re3data.org/repository/r3d100012189", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND", + "@id": "https://bartoc.org/en/node/1237", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/dip", + "@id": "https://www.re3data.org/repository/r3d100011280", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://aber-owl.net/ontology/EDAM", + "@id": "https://registry.bio2kg.org/resource/geneloc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/caro", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AAO", + "@id": "https://www.re3data.org/repository/r3d100011564", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/nrfc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)", + "@id": "https://www.re3data.org/repository/r3d100012626", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Repository of Fish Cell Lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mail.nbfgr.res.in/nrfc/index.php" - }, - "https://bioregistry.io/schema/#0000005": "NRFC051", - "https://bioregistry.io/schema/#0000008": "^NRFC\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "nrfc" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bartoc.org/en/node/20428", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://orcid.org/0000-0002-1635-4810", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pantelis Topalis" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "topalis@imbb.forth.gr" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA", + "@id": "https://registry.identifiers.org/registry/gmd.analyte", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio", + "@id": "https://fairsharing.org/FAIRsharing.2qx8n8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/birnlex", + "@id": "https://bioregistry.io/registry/smart", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.", + "http://purl.org/dc/terms/description": "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biomedical Informatics Research Network Lexicon" + "@value": "Simple Modular Architecture Research Tool" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" + "@id": "https://www.uniprot.org/database/DB-0097" }, { - "@id": "https://fairsharing.org/FAIRsharing.jedbbt" + "@id": "https://bioregistry.io/metaregistry/biocontext/SMART" }, { - "@id": "http://aber-owl.net/ontology/BIRNLEX" + "@id": "https://bioregistry.io/metaregistry/go/resolve/SMART" + }, + { + "@id": "https://registry.bio2kg.org/resource/smart" + }, + { + "@id": "https://registry.identifiers.org/registry/smart" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hsbpq3" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "domain" }, { - "@value": "ontology" + "@value": "protein" }, { - "@value": "anatomy" + "@value": "life science" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" - }, - "https://bioregistry.io/schema/#0000005": "2023", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/birnlex_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/BIRNLEX/1/birnlex.owl" + "@id": "http://smart.embl-heidelberg.de/" }, + "https://bioregistry.io/schema/#0000005": "SM00015", + "https://bioregistry.io/schema/#0000006": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1", + "https://bioregistry.io/schema/#0000008": "^SM\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nd9a3ed545fc949169d71f3ee1eee9f9e" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/birnlex_", + "https://bioregistry.io/schema/#0000024": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/birnlex_2023" + "@id": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=SM00015" }, "https://bioregistry.io/schema/#0000029": { - "@value": "birnlex" - } - }, - { - "@id": "_:Nd9a3ed545fc949169d71f3ee1eee9f9e", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "William Bug" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wbug@ncmir.ucsd.edu" + "@value": "smart" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo", + "@id": "https://registry.bio2kg.org/resource/mp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://orcid.org/0000-0002-2244-7917", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ceri Van Slyke" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "van_slyke@zfin.org" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/csa", + "@id": "http://www.wikidata.org/entity/P9157", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPB", + "@id": "http://www.ontobee.org/ontology/STATO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/rnacentral", + "@id": "https://bioregistry.io/registry/validatordb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.", + "http://purl.org/dc/terms/description": "Database of validation results for ligands and non-standard residues in the Protein Data Bank.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/RNAcentral/" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNACentral" + "@value": "ValidatorDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/rnacentral" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral" + "@id": "https://fairsharing.org/FAIRsharing.c9psgb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral" + "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB" }, { - "@id": "http://www.wikidata.org/entity/P8697" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL" - }, - { - "@id": "http://edamontology.org/data_3856" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.KcCjL7" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "bioinformatics" - }, - { - "@value": "biology" + "@id": "https://registry.identifiers.org/registry/validatordb" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rnacentral.org/" + "@id": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/" + }, + "https://bioregistry.io/schema/#0000005": "2h6o", + "https://bioregistry.io/schema/#0000006": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\/]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/pdb" }, - "https://bioregistry.io/schema/#0000005": "URS0000759CF4", - "https://bioregistry.io/schema/#0000006": "https://rnacentral.org/rna/$1", - "https://bioregistry.io/schema/#0000008": "^URS[0-9A-F]{10}(\\_\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6497-2883" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "LNCRNADB" + "@id": "https://orcid.org/0000-0002-0682-3089" }, - "https://bioregistry.io/schema/#0000024": "https://rnacentral.org/rna/", + "https://bioregistry.io/schema/#0000024": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://rnacentral.org/rna/URS0000759CF4" + "@id": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/2h6o" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rnacentral" + "@value": "validatordb" } }, { - "@id": "https://www.re3data.org/repository/r3d100012176", + "@id": "http://www.wikidata.org/entity/P662", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100013295", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE", + "@id": "http://aber-owl.net/ontology/OMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/nif_dysfunction", + "@id": "https://www.obofoundry.org/ontology/ido", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/mipmod", + "@id": "https://registry.bio2kg.org/resource/imgt.primerdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/iceberg.family", + "@id": "https://bioregistry.io/registry/bspo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/biological-spatial-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Biological Spatial Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/iceberg" + "@id": "https://www.obofoundry.org/ontology/bspo" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO" + }, + { + "@id": "http://www.ontobee.org/ontology/BSPO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BSPO" + }, + { + "@id": "http://aber-owl.net/ontology/BSPO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.newa3z" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ICEberg family" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/iceberg.family" + "@value": "obo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY" + "@value": "life science" + }, + { + "@value": "anatomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_fam.php" + "@id": "https://github.com/obophenotype/biological-spatial-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000029", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BSPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/bspo.owl" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=", + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/aism" + }, + { + "@id": "https://bioregistry.io/registry/fovt" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + }, + { + "@id": "https://bioregistry.io/registry/zp" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BSPO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=1" + "@id": "http://purl.obolibrary.org/obo/BSPO_0000029" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iceberg.family" + "@value": "bspo" } }, { - "@id": "https://bioregistry.io/collection/0000004", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/schema/#0000005", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "An identifier for a resource or metaresource." }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has local unique identifier example" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "https://bioregistry.io/registry/icd10cm" + "@id": "http://identifiers.org/idot/exampleIdentifier" }, { - "@id": "https://bioregistry.io/registry/icd10" + "@id": "http://vocabularies.bridgedb.org/ops#idExample" }, { - "@id": "https://bioregistry.io/registry/icd9" + "@id": "http://purl.org/vocab/vann/example" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/kegg.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/kegg" }, { - "@id": "https://bioregistry.io/registry/icdo" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Compound" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "https://bioregistry.io/registry/icd11" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND" }, { - "@id": "https://bioregistry.io/registry/icd9cm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound" }, { - "@id": "https://bioregistry.io/registry/icd10pcs" + "@id": "https://registry.identifiers.org/registry/kegg.compound" + }, + { + "@id": "https://registry.bio2kg.org/resource/kegg.compound" + }, + { + "@id": "http://edamontology.org/data_2605" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classifications of Diseases" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.jp/kegg/ligand.html" + }, + "https://bioregistry.io/schema/#0000005": "C12345", + "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "KEGG COMPOUND" + }, + { + "@value": "KEGG.COMPOUND" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.kegg.jp/entry/C12345" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.compound" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000411", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_357", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://orcid.org/0000-0003-4871-5569", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rebecca Jackson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rbca.jackson@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.t3snf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100012171", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/nkos", + "@id": "http://aber-owl.net/ontology/AGRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/CMPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/hgnc.genegroup", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.\n\nKnowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004).", + "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Networked Knowledge Organization Systems/Services/Structures" + "@value": "HGNC Gene Group" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/hgnc.genegroup" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://w3id.org/nkos" + "@id": "https://www.genenames.org" }, - "https://bioregistry.io/schema/#0000005": "alignedWith", - "https://bioregistry.io/schema/#0000006": "http://w3id.org/nkos/$1", + "https://bioregistry.io/schema/#0000005": "141", + "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/genefamilies/set/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://w3id.org/nkos/", + "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/genefamilies/set/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://w3id.org/nkos/alignedWith" + "@id": "https://www.genenames.org/cgi-bin/genefamilies/set/141" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nkos" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "hgnc.genegroup" } }, { - "@id": "https://www.obofoundry.org/ontology/mat", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA", + "@id": "http://aber-owl.net/ontology/LEPAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.uniprot.org/database/DB-0015", + "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO", + "@id": "http://www.ontobee.org/ontology/ICO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/amphx", + "@id": "https://bioregistry.io/registry/flybrain.ndb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).", + "http://purl.org/dc/terms/description": "A database of fly neurons and pathways with an associated 3D viewer.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/amphx_ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Amphioxus Development and Anatomy Ontology" + "@value": "FlyBrain Neuron Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/AMPHX" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx" - }, - { - "@id": "http://www.ontobee.org/ontology/AMPHX" - }, - { - "@id": "https://www.obofoundry.org/ontology/amphx" - }, - { - "@id": "http://aber-owl.net/ontology/AMPHX" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EBISPOT/amphx_ontology" + "@id": "https://flybrain-ndb.virtualflybrain.org" }, - "https://bioregistry.io/schema/#0000005": "1000160", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AMPHX_$1", + "https://bioregistry.io/schema/#0000005": "10531", + "https://bioregistry.io/schema/#0000006": "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/amphx.owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/uberon" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7577-5028" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AMPHX_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/flybrain.ndb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/AMPHX_1000160" + "@id": "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=10531&-find=-find.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "amphx" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011906", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "flybrain.ndb" } }, { - "@id": "https://bioregistry.io/registry/ga4ghdos", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Assists in resolving data across cloud resources.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Data Object Service" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/ga4ghdos" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://github.com/ga4gh/data-object-service-schemas" - }, - "https://bioregistry.io/schema/#0000005": "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d", - "https://bioregistry.io/schema/#0000006": "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9\\-:#/\\.]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dataguids.org/ga4gh/dos/v1/dataobjects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dataguids.org/ga4gh/dos/v1/dataobjects/dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ga4ghdos" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_323", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK", + "@id": "http://aber-owl.net/ontology/WBBT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/STATO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/modeldb", + "@id": "https://bioregistry.io/registry/omia", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment.", + "http://purl.org/dc/terms/description": "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in 363 animal species (other than human and mouse and rats and zebrafish, which have their own resources).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ModelDB" + "@value": "Online Mendelian Inheritance in Animals" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.5rb3fk" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA" }, { - "@id": "https://www.re3data.org/repository/r3d100011330" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB" + "@id": "https://registry.bio2kg.org/resource/omia" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb" - }, + "@id": "https://registry.identifiers.org/registry/omia" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/modeldb" + "@value": "gene" }, { - "@id": "http://edamontology.org/data_2669" + "@value": "traits" }, { - "@id": "https://registry.bio2kg.org/resource/modeldb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "neurobiology" + "@value": "model organism database" }, { - "@value": "life science" + "@value": "classification" }, { - "@value": "computational biology" + "@value": "disorders" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://modeldb.science" + "@id": "https://omia.org" }, - "https://bioregistry.io/schema/#0000005": "45539", - "https://bioregistry.io/schema/#0000006": "https://modeldb.science/$1", + "https://bioregistry.io/schema/#0000005": "1000", + "https://bioregistry.io/schema/#0000006": "https://omia.org/OMIA$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://modeldb.science/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5520-6597" + }, + "https://bioregistry.io/schema/#0000024": "https://omia.org/OMIA", "https://bioregistry.io/schema/#0000027": { - "@id": "https://modeldb.science/45539" + "@id": "https://omia.org/OMIA1000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "modeldb" + "@value": "omia" } }, { - "@id": "https://www.obofoundry.org/ontology/pao", + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/FBdv", + "@id": "http://www.ontobee.org/ontology/XLMOD", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio", + "@id": "https://www.re3data.org/repository/r3d100000023", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://aber-owl.net/ontology/IDOMAL", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.nbfwwv", + "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5dnjs2", + "@id": "https://registry.bio2kg.org/resource/refseq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.uniprot.org/database/DB-0161", + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://orcid.org/0000-0003-1877-1703", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Célia Michotey" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "celia.michotey@inrae.fr" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wy4egf", + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/kupo", + "@id": "https://bioregistry.io/registry/fovt", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "These are the terms that are improted for FOVT to describe vertebrate traits.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/futres/fovt" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kidney and Urinary Pathway Ontology" + "@value": "FuTRES Ontology of Vertebrate Traits" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt" + }, + { + "@id": "http://aber-owl.net/ontology/FOVT" + }, + { + "@id": "http://www.ontobee.org/ontology/FOVT" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FOVT" + }, + { + "@id": "https://www.obofoundry.org/ontology/fovt" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kupkb.org/" + "@id": "https://github.com/futres/fovt" }, - "https://bioregistry.io/schema/#0000005": "0001009", + "https://bioregistry.io/schema/#0000005": "0000009", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOVT_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/cl" + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fovt.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/bspo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/oba" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/bco" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2699-3066" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOVT_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FOVT_0000009" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kupo" + "@value": "fovt" } }, { - "@id": "https://bioregistry.io/registry/ccle", + "@id": "https://www.re3data.org/repository/r3d100010562", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/oryzabase.gene", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Datasets around different cancer cell lines generated by the Broad Institute and Novartis", + "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cancer Cell Line Encyclopedia Cells" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE" + "@value": "Oryzabase Gene" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/oryzabase.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cbioportal.org/study/summary?id=ccle_broad_2019" + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" }, - "https://bioregistry.io/schema/#0000005": "BT20_BREAST", - "https://bioregistry.io/schema/#0000006": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1", + "https://bioregistry.io/schema/#0000005": "117", + "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ccle.cell" - }, - "https://bioregistry.io/schema/#0000024": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=", + "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=BT20_BREAST" + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/117" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ccle" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "oryzabase.gene" } }, { - "@id": "https://bioregistry.io/registry/repeatsdb.structure", + "@id": "https://bioregistry.io/registry/sstoss", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.", + "http://purl.org/dc/terms/description": "SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RepeatsDB Structure" + "@value": "Sequence-Structural Templates of Single-member Superfamilies" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/repeatsdb.structure" + "@id": "https://registry.bio2kg.org/resource/sstoss" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structure" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://repeatsdb.org/" + "@id": "http://caps.ncbs.res.in/SSTOSS/index.htm" }, - "https://bioregistry.io/schema/#0000005": "2gc4E", - "https://bioregistry.io/schema/#0000006": "https://repeatsdb.org/structure/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://repeatsdb.org/structure/", + "https://bioregistry.io/schema/#0000005": "01.01.005", + "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://repeatsdb.org/structure/2gc4E" + "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=01.01.005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "repeatsdb.structure" + "@value": "sstoss" } }, { - "@id": "https://bioregistry.io/registry/hgnc", + "@id": "https://registry.identifiers.org/registry/aop.events", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mimodb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.", + "http://purl.org/dc/terms/description": "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HUGO Gene Nomenclature Committee" + "@value": "MimoDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC" - }, - { - "@id": "https://www.uniprot.org/database/DB-0042" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.amcv1e" - }, - { - "@id": "https://registry.bio2kg.org/resource/hgnc" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.281" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC" - }, - { - "@id": "http://aber-owl.net/ontology/HGNC" - }, - { - "@id": "http://www.wikidata.org/entity/P354" - }, - { - "@id": "http://edamontology.org/data_2298" + "@id": "https://fairsharing.org/FAIRsharing.bv0zjz" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/HGNC" + "@id": "https://registry.bio2kg.org/resource/mimodb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb" }, { - "@id": "https://registry.identifiers.org/registry/hgnc" + "@id": "https://registry.identifiers.org/registry/mimodb" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -81469,21185 +73013,26430 @@ "@value": "life science" }, { - "@value": "classification" - }, - { - "@value": "gene" + "@value": "protein" }, { - "@value": "ontology" + "@value": "interaction" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genenames.org" - }, - "https://bioregistry.io/schema/#0000005": "16793", - "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/HGNC/1/hgnc.owl" + "@id": "http://immunet.cn/bdb/" }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://immunet.cn/bdb/index.php/mimoset/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8380-5247" - }, - "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/", + "https://bioregistry.io/schema/#0000024": "http://immunet.cn/bdb/index.php/mimoset/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/16793" + "@id": "http://immunet.cn/bdb/index.php/mimoset/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hgnc" + "@value": "mimodb" } }, { - "@id": "https://bioregistry.io/registry/mediadive.ingredient", + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/LEPAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/oridb.sacch", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", + "http://purl.org/dc/terms/description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MediaDive Ingredient" + "@value": "OriDB Saccharomyces" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch" + }, + { + "@id": "https://registry.identifiers.org/registry/oridb.sacch" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mediadive.dsmz.de/solutions" + "@id": "http://cerevisiae.oridb.org/index.php" }, - "https://bioregistry.io/schema/#0000005": "13", - "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/ingredients/$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://cerevisiae.oridb.org/details.php?id=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3909-7201" - }, - "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/ingredients/", + "https://bioregistry.io/schema/#0000024": "http://cerevisiae.oridb.org/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mediadive.dsmz.de/ingredients/13" + "@id": "http://cerevisiae.oridb.org/details.php?id=1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mediadive.ingredient" + "@value": "oridb.sacch" } }, { - "@id": "https://bioregistry.io/registry/mp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/mgijax/mammalian-phenotype-ontology" - }, + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/panther.node", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/panther" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mammalian Phenotype Ontology" + "@value": "PANTHER Node" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/MP" + "@id": "https://registry.identifiers.org/registry/panther.node" }, { - "@id": "http://www.ontobee.org/ontology/MP" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node" }, { - "@id": "https://registry.identifiers.org/registry/mp" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pantree.org/" + }, + "https://bioregistry.io/schema/#0000005": "PTN000000026", + "https://bioregistry.io/schema/#0000006": "http://www.pantree.org/node/annotationNode.jsp?id=$1", + "https://bioregistry.io/schema/#0000008": "^PTN\\d{9}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pantree.org/node/annotationNode.jsp?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pantree.org/node/annotationNode.jsp?id=PTN000000026" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "panther.node" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cropoct", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms" + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://cropontology.org/ontology/CO_330" }, { - "@id": "https://fairsharing.org/FAIRsharing.kg1x4z" + "@id": "https://cropontology.org/ontology/CO_347" }, { - "@id": "https://www.obofoundry.org/ontology/mp" + "@id": "https://cropontology.org/ontology/CO_339" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MP" + "@id": "https://cropontology.org/ontology/CO_360" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp" + "@id": "https://cropontology.org/ontology/CO_340" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp" + "@id": "https://cropontology.org/ontology/CO_320" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MP" + "@id": "https://cropontology.org/ontology/CO_324" }, { - "@id": "https://registry.bio2kg.org/resource/mp" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://cropontology.org/ontology/CO_365" + }, { - "@value": "life science" + "@id": "https://cropontology.org/ontology/CO_338" }, { - "@value": "phenotype" + "@id": "https://cropontology.org/ontology/CO_350" }, { - "@value": "developmental biology" + "@id": "https://cropontology.org/ontology/CO_356" }, { - "@value": "obo" + "@id": "https://cropontology.org/ontology/CO_326" }, { - "@value": "ontology" + "@id": "https://cropontology.org/ontology/CO_370" }, { - "@value": "physiology" + "@id": "https://cropontology.org/ontology/CO_321" }, { - "@value": "mammalian" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.informatics.jax.org/searches/MP_form.shtml" - }, - "https://bioregistry.io/schema/#0000005": "0005452", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mp.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://cropontology.org/ontology/CO_358" + }, { - "@id": "https://bioregistry.io/registry/chiro" + "@id": "https://cropontology.org/ontology/CO_359" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://cropontology.org/ontology/CO_345" + }, + { + "@id": "https://cropontology.org/ontology/CO_322" + }, + { + "@id": "https://cropontology.org/ontology/CO_336" + }, + { + "@id": "https://cropontology.org/ontology/CO_325" + }, + { + "@id": "https://cropontology.org/ontology/CO_357" + }, + { + "@id": "https://cropontology.org/ontology/CO_341" + }, + { + "@id": "https://cropontology.org/ontology/CO_367" + }, + { + "@id": "https://cropontology.org/ontology/CO_334" + }, + { + "@id": "https://cropontology.org/ontology/CO_335" + }, + { + "@id": "https://cropontology.org/ontology/CO_323" + }, + { + "@id": "https://cropontology.org/ontology/CO_327" + }, + { + "@id": "https://cropontology.org/ontology/CO_333" + }, + { + "@id": "https://cropontology.org/ontology/CO_346" + }, + { + "@id": "https://cropontology.org/ontology/CO_337" + }, + { + "@id": "https://cropontology.org/ontology/CO_348" + }, + { + "@id": "https://cropontology.org/ontology/CO_331" + }, + { + "@id": "https://cropontology.org/ontology/CO_366" + }, + { + "@id": "https://cropontology.org/ontology/CO_343" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4606-0597" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Curation Tool" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MP_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MP_0005452" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://www.cropontology.org" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mp" + "https://bioregistry.io/schema/#0000005": { + "@value": "CO_325" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://cropontology.org/ontology/$1" + }, + "https://bioregistry.io/schema/#0000007": { + "@value": "https://cropontology.org/term/$1:$2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6020-5919" } }, { - "@id": "http://aber-owl.net/ontology/OMIABIS", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AERO", + "@id": "https://registry.identifiers.org/registry/myco.lepra", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2789", + "@id": "https://fairsharing.org/FAIRsharing.tp9z4q", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL", + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/T4FS", + "@id": "https://fairsharing.org/FAIRsharing.h4j3qm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC", + "@id": "https://bioportal.bioontology.org/ontologies/ORTH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/BIOLINK", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.obofoundry.org/ontology/obi", + "@id": "http://edamontology.org/data_3264", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-8732-0928", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Eric W. Deutsch" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "edeutsch@systemsbiology.org" } }, { - "@id": "https://bioregistry.io/registry/sugarbind", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands.", + "@id": "https://registry.identifiers.org/registry/pharmgkb.disease", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SugarBind" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.d064y6" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND" - }, - { - "@id": "http://aber-owl.net/ontology/SUGARBIND" - }, - { - "@id": "https://registry.identifiers.org/registry/sugarbind" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "glycomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sugarbind.expasy.org/" - }, - "https://bioregistry.io/schema/#0000005": "lectins/172", - "https://bioregistry.io/schema/#0000006": "http://sugarbind.expasy.org/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+\\/[0-9]+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SUGARBIND/1/sugarbind.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0948-4537" - }, - "https://bioregistry.io/schema/#0000024": "http://sugarbind.expasy.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://sugarbind.expasy.org/lectins/172" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sugarbind" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND", + "@id": "https://registry.bio2kg.org/resource/cellimage", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/cst.ab", + "@id": "https://bioregistry.io/registry/pigqtldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/qtldb" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Signaling Technology Antibody" + "@value": "Animal Genome Pig QTL" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab" + "@id": "https://registry.bio2kg.org/resource/pigqtldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB" }, { - "@id": "https://registry.bio2kg.org/resource/cst" + "@id": "https://registry.identifiers.org/registry/pigqtldb" }, { - "@id": "https://registry.identifiers.org/registry/cst.ab" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "genome" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "pathway" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cellsignal.com/catalog/index.html" + "@id": "https://www.animalgenome.org/QTLdb" }, - "https://bioregistry.io/schema/#0000005": "3305", - "https://bioregistry.io/schema/#0000006": "http://www.cellsignal.com/products/$1.html", + "https://bioregistry.io/schema/#0000005": "14", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cst.ab:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cellsignal.com/products/3305.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cst.ab" - } - }, - { - "@id": "https://bioregistry.io/registry/ncbi.resource", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" - }, - "https://bioregistry.io/schema/#0000005": "ECOCYC", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/ncbi/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/ncbi/", + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/ncbi/ECOCYC" + "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:14" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbi.resource" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DPV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/MMUSDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012657", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://orcid.org/0000-0002-1798-9797", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jeff Beck" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "beck@ncbi.nlm.nih.gov" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000011", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "provides for" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.glycan", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dbest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://www.ontobee.org/ontology/UBERON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "pigqtldb" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl", + "@id": "https://bioportal.bioontology.org/ontologies/RBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM", + "@id": "https://fairsharing.org/FAIRsharing.45a10e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/OMP", + "@id": "http://aber-owl.net/ontology/CCF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://edamontology.org/data_2367", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010975", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/tto", + "@id": "https://bioregistry.io/registry/fishbase.species", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology covering the taxonomy of teleosts (bony fish)", + "http://purl.org/dc/terms/description": "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/phenoscape/teleost-taxonomy-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Teleost taxonomy ontology" + "@value": "FishBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/TTO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTO" - }, - { - "@id": "https://www.obofoundry.org/ontology/tto" - }, - { - "@id": "https://registry.bio2kg.org/resource/tto" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TTO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto" - }, - { - "@id": "http://aber-owl.net/ontology/TTO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1rj558" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "phenotype" - }, - { - "@value": "fish" - }, - { - "@value": "obo" + "@id": "https://www.re3data.org/repository/r3d100010912" }, { - "@value": "ontology" + "@id": "http://www.wikidata.org/entity/P938" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/phenoscape/teleost-taxonomy-ontology" + "@id": "http://fishbase.org" }, - "https://bioregistry.io/schema/#0000005": "1058367", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TTO_$1", + "https://bioregistry.io/schema/#0000005": "6472", + "https://bioregistry.io/schema/#0000006": "https://www.fishbase.ca/summary/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/tto.owl" - }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8688-6599" + "https://bioregistry.io/schema/#0000023": { + "@value": "fishbase" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TTO_", + "https://bioregistry.io/schema/#0000024": "https://www.fishbase.ca/summary/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/TTO_1058367" + "@id": "https://www.fishbase.ca/summary/6472" }, "https://bioregistry.io/schema/#0000029": { - "@value": "tto" + "@value": "fishbase.species" } }, { - "@id": "https://bioregistry.io/registry/gnd", + "@id": "https://registry.identifiers.org/registry/nmr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2302", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/pd_st", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gemeinsame Normdatei" + "@value": "Platynereis stage ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gnd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8337e2" + "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST" }, { - "@id": "https://bartoc.org/en/node/430" + "@id": "https://www.obofoundry.org/ontology/pd_st" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "social science" - }, - { - "@value": "culture" + "@value": "ontology" }, { - "@value": "knowledge and information systems" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lobid.org/" + "@id": "http://4dx.embl.de/platy" }, - "https://bioregistry.io/schema/#0000005": "117145750", - "https://bioregistry.io/schema/#0000006": "https://lobid.org/gnd/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9X\\-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://lobid.org/gnd/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://lobid.org/gnd/117145750" + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PD_ST_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1548-3290" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PD_ST_", "https://bioregistry.io/schema/#0000029": { - "@value": "gnd" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ATOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "pd_st" } }, { - "@id": "https://registry.bio2kg.org/resource/uniparc", + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100010468", + "@id": "https://fairsharing.org/FAIRsharing.jjb2p2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free", + "@id": "https://registry.bio2kg.org/resource/eggnog", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.wikidata.org/entity/P267", + "@id": "https://bioregistry.io/metaregistry/biocontext/VO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon", + "@id": "http://www.ontobee.org/ontology/MIRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo", + "@id": "http://aber-owl.net/ontology/HANCESTRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary", + "@id": "https://registry.identifiers.org/registry/nasc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPL", + "@id": "http://www.ontobee.org/ontology/OPL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://www.ontobee.org/ontology/VariO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/signaling-gateway", + "@id": "https://fairsharing.org/FAIRsharing.azqskx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.compound", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/STY", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://edamontology.org/data_2723", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda", + "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_323", + "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ascl", + "@id": "https://bioregistry.io/registry/sgd.pathways", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).", + "http://purl.org/dc/terms/description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Astrophysics Source Code Library" + "@value": "Saccharomyces genome database pathways" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways" }, { - "@id": "https://fairsharing.org/FAIRsharing.wb0txg" + "@id": "https://registry.bio2kg.org/resource/sgd.pathways" }, { - "@id": "https://registry.identifiers.org/registry/ascl" + "@id": "https://registry.identifiers.org/registry/sgd.pathways" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" }, { - "@id": "https://www.re3data.org/repository/r3d100011865" + "@value": "sequence" + }, + { + "@value": "genome" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "astrophysics and astronomy" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ascl.net/" + "@id": "http://pathway.yeastgenome.org/" }, - "https://bioregistry.io/schema/#0000005": "1801.012", - "https://bioregistry.io/schema/#0000006": "http://ascl.net/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9\\.]+$", + "https://bioregistry.io/schema/#0000005": "PWY3O-214", + "https://bioregistry.io/schema/#0000006": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1", + "https://bioregistry.io/schema/#0000008": "^PWY\\w{2}\\-\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ascl.net/", + "https://bioregistry.io/schema/#0000024": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ascl.net/1801.012" + "@id": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=PWY3O-214" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ascl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "sgd.pathways" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD", + "@id": "https://registry.bio2kg.org/resource/pdbj", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/funcbase.yeast", + "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DRON", + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/dpvweb", + "@id": "http://aber-owl.net/ontology/CMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/thermofisher", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ThermoFisher is a life sciences supply vendor.", + "@id": "https://bioportal.bioontology.org/ontologies/RS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Thermo Fisher Scientific" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life sciences" - }, - { - "@value": "chemistry" - }, - { - "@value": "biology" - }, - { - "@value": "vendor" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.thermofisher.com" - }, - "https://bioregistry.io/schema/#0000005": "OSR00185W", - "https://bioregistry.io/schema/#0000006": "https://www.thermofisher.com/antibody/product/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.thermofisher.com/antibody/product/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.thermofisher.com/antibody/product/OSR00185W" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "thermofisher" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PCO", + "@id": "http://www.ontobee.org/ontology/PCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/NBO", + "@id": "http://aber-owl.net/ontology/EUPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI", + "@id": "https://registry.bio2kg.org/resource/nmr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/CL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0001-9076-6015", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chris Grove" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cgrove@caltech.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE", + "@id": "http://www.ontobee.org/ontology/FBcv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/panorama", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Panorama Public" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q" + "@id": "https://bioregistry.io/metaregistry/biocontext", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "BioContext contains modular JSON-LD contexts for bioinformatics data." }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://purl.org/dc/terms/hasPart": [ { - "@value": "metabolomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB" }, { - "@value": "proteomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://panoramaweb.org" - }, - "https://bioregistry.io/schema/#0000005": "FxnI151FMs", - "https://bioregistry.io/schema/#0000006": "https://panoramaweb.org/$1.url", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9575-0255" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/panorama:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://panoramaweb.org/FxnI151FMs.url" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "panorama" - } - }, - { - "@id": "https://bioregistry.io/registry/fcb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).\n\n", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "the FAIR Cookbook" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/fcb" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org" - }, - "https://bioregistry.io/schema/#0000005": "FCB005", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/faircookbook/$1", - "https://bioregistry.io/schema/#0000008": "^FCB\\d{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/faircookbook/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/faircookbook/FCB005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fcb" - } - }, - { - "@id": "https://bioregistry.io/registry/hpm.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Proteome Map" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN" + "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM" + "@id": "https://bioregistry.io/metaregistry/biocontext/OPL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB" }, { - "@id": "https://registry.identifiers.org/registry/hpm.protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.humanproteomemap.org/index.php" - }, - "https://bioregistry.io/schema/#0000005": "1968", - "https://bioregistry.io/schema/#0000006": "http://www.humanproteomemap.org/protein.php?hpm_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.humanproteomemap.org/protein.php?hpm_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.humanproteomemap.org/protein.php?hpm_id=1968" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hpm.protein" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hgnc.symbol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/rgap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rice Genome Annotation Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/rgap" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO" + }, { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE" }, { - "@value": "dna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rice.plantbiology.msu.edu/" - }, - "https://bioregistry.io/schema/#0000005": "LOC_Os02g13300", - "https://bioregistry.io/schema/#0000006": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=LOC_Os02g13300" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rgap" - } - }, - { - "@id": "https://orcid.org/0000-0001-6338-1312", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Erik van Nimwegen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "erik.vannimwegen@unibas.ch" - } - }, - { - "@id": "http://www.wikidata.org/entity/P818", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/gno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bigg.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/archdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ArchDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC" + }, { - "@id": "https://registry.bio2kg.org/resource/archdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON" }, { - "@id": "https://fairsharing.org/FAIRsharing.tp9z4q" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI" }, { - "@value": "classification" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sbi.imim.es/archdb" - }, - "https://bioregistry.io/schema/#0000005": "39421", - "https://bioregistry.io/schema/#0000006": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6421-1080" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=39421" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "archdb" - } - }, - { - "@id": "https://orcid.org/0000-0003-0443-9902", - "http://purl.org/dc/terms/contributor": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION" + }, { - "@id": "https://bioregistry.io/registry/coconut" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE" }, { - "@id": "https://bioregistry.io/registry/lotus" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Adriano Rutz" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "adriano.rutz@ik.me" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/WBPhenotype", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://edamontology.org/data_2738", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/mesh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/mesh.vocab" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medical Subject Headings" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD" + }, { - "@id": "https://registry.bio2kg.org/resource/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOM" }, { - "@id": "http://www.wikidata.org/entity/P486" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO" }, { - "@id": "http://aber-owl.net/ontology/MESH" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH" + "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank" }, { - "@id": "https://registry.identifiers.org/registry/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH" + "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH" + "@id": "https://bioregistry.io/metaregistry/biocontext/DUO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD" }, { - "@id": "http://edamontology.org/data_1177" + "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MESH" + "@id": "https://bioregistry.io/metaregistry/biocontext/OPM" }, { - "@id": "https://bartoc.org/en/node/391" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRANS" }, { - "@id": "https://fairsharing.org/FAIRsharing.qnkw45" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.177" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO" }, { - "@value": "classification" + "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE" }, { - "@value": "metascience" + "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS" }, { - "@value": "topics" + "@id": "https://bioregistry.io/metaregistry/biocontext/NBO" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://id.nlm.nih.gov/mesh/" - }, - "https://bioregistry.io/schema/#0000005": "C063233", - "https://bioregistry.io/schema/#0000006": "https://meshb.nlm.nih.gov/record/ui?ui=$1", - "https://bioregistry.io/schema/#0000008": "^(C|D)\\d{6,9}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N4b6f177c38fa4e3db98464cdf5ad524a" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD" + }, { - "@value": "MESHCS" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN" }, { - "@value": "MESH_SUPPLEMENTAL_RECORD_UI" + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRICOLA" }, { - "@value": "MESHPP" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS" }, { - "@value": "MESHC" + "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN" }, { - "@value": "MESH" + "@id": "https://bioregistry.io/metaregistry/biocontext/MPID" }, { - "@value": "MESHD" + "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB" }, { - "@value": "MSH2010_2010_02_22" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC" }, { - "@value": "MESHA" + "@id": "https://bioregistry.io/metaregistry/biocontext/MF" }, { - "@value": "MESH_DESCRIPTOR_UI" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL" }, { - "@value": "MSH" - } - ], - "https://bioregistry.io/schema/#0000024": "https://meshb.nlm.nih.gov/record/ui?ui=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://meshb.nlm.nih.gov/record/ui?ui=C063233" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mesh" - } - }, - { - "@id": "_:N4b6f177c38fa4e3db98464cdf5ad524a", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NLM Customer Service" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "custserv@nlm.nih.gov" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0228", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/OMIM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012647", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/pgx", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Progenetix" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGX" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL" }, { - "@id": "https://registry.identifiers.org/registry/pgx" + "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV" }, { - "@id": "https://fairsharing.org/FAIRsharing.65tdnz" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx" + "@id": "https://bioregistry.io/metaregistry/biocontext/ABS" }, { - "@id": "https://www.re3data.org/repository/r3d100012820" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS" }, { - "@value": "genomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://progenetix.org/" - }, - "https://bioregistry.io/schema/#0000005": "pgxbs-kftva5zv", - "https://bioregistry.io/schema/#0000006": "https://progenetix.org/services/ids/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9903-4248" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "Progenetix" - }, - "https://bioregistry.io/schema/#0000024": "https://progenetix.org/services/ids/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://progenetix.org/services/ids/pgxbs-kftva5zv" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pgx" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/txpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LEPAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/mw.study", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolomics Workbench Study" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/AAO" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study" + "@id": "https://bioregistry.io/metaregistry/biocontext/XCO" }, { - "@id": "https://registry.identifiers.org/registry/mw.study" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.metabolomicsworkbench.org/" - }, - "https://bioregistry.io/schema/#0000005": "ST000900", - "https://bioregistry.io/schema/#0000006": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1", - "https://bioregistry.io/schema/#0000008": "^ST[0-9]{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=ST000900" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mw.study" - } - }, - { - "@id": "https://registry.identifiers.org/registry/uberon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/panther.family", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED" + }, { - "@id": "https://bioregistry.io/registry/panther" + "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PANTHER Family" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT" + }, { - "@id": "https://registry.identifiers.org/registry/panther.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/DIP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO" }, { - "@id": "https://registry.bio2kg.org/resource/panther" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE" }, { - "@id": "https://www.uniprot.org/database/DB-0069" + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/DRON" + }, { - "@value": "pathway" + "@id": "https://bioregistry.io/metaregistry/biocontext/NBN" }, { - "@value": "classification" + "@id": "https://bioregistry.io/metaregistry/biocontext/DPV" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECO" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pantherdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "PTHR12345", - "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/panther/family.do?clsAccession=$1", - "https://bioregistry.io/schema/#0000008": "^PTHR\\d{5}(\\:SF\\d{1,3})?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/panther/family.do?clsAccession=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "panther.family" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tigrfams", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/emmo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/emmo-repo/EMMO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Elementary Multiperspective Material Ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://emmo-repo.github.io" - }, - "https://bioregistry.io/schema/#0000005": "03212fd7_abfd_4828_9c8e_62c293052d4b", - "https://bioregistry.io/schema/#0000006": "http://emmo.info/emmo#EMMO_$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1560-809X" - }, - "https://bioregistry.io/schema/#0000024": "http://emmo.info/emmo#EMMO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://emmo.info/emmo#EMMO_03212fd7_abfd_4828_9c8e_62c293052d4b" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "emmo" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NANDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/obi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0130", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rhea", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bartoc.org/en/node/216", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/registry/pubchem.substance", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO" + }, { - "@id": "https://bioregistry.io/registry/pubchem" + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubChem Substance ID (SID)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB" + }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.substance" + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE" + "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000141" + "@id": "https://bioregistry.io/metaregistry/biocontext/faldo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance" + "@id": "https://bioregistry.io/metaregistry/biocontext/BEGDB" }, { - "@id": "http://www.wikidata.org/entity/P2153" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND" }, { - "@id": "https://registry.identifiers.org/registry/pubchem.substance" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOP" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Substance" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT" }, { - "@value": "small molecule" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/" - }, - "https://bioregistry.io/schema/#0000005": "100101", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/substance/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "DSSTox_Generic_SID" - }, - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/substance/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/substance/100101" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.substance" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012721", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3890", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/repeatsdb.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/obofoundry", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS" + }, { - "@id": "https://www.obofoundry.org/ontology/rxno" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL" }, { - "@id": "https://www.obofoundry.org/ontology/planp" + "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS" }, { - "@id": "https://www.obofoundry.org/ontology/ncit" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN" }, { - "@id": "https://www.obofoundry.org/ontology/fbsp" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOL" }, { - "@id": "https://www.obofoundry.org/ontology/po" + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT" }, { - "@id": "https://www.obofoundry.org/ontology/bspo" + "@id": "https://bioregistry.io/metaregistry/biocontext/STRING" }, { - "@id": "https://www.obofoundry.org/ontology/idomal" + "@id": "https://bioregistry.io/metaregistry/biocontext/MRO" }, { - "@id": "https://www.obofoundry.org/ontology/ohmi" + "@id": "https://bioregistry.io/metaregistry/biocontext/xsd" }, { - "@id": "https://www.obofoundry.org/ontology/sopharm" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS" }, { - "@id": "https://www.obofoundry.org/ontology/fbdv" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAO" }, { - "@id": "https://www.obofoundry.org/ontology/bcgo" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZINC" }, { - "@id": "https://www.obofoundry.org/ontology/pdumdv" + "@id": "https://bioregistry.io/metaregistry/biocontext/GABI" }, { - "@id": "https://www.obofoundry.org/ontology/gsso" + "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13" }, { - "@id": "https://www.obofoundry.org/ontology/fovt" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG" }, { - "@id": "https://www.obofoundry.org/ontology/mop" + "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO" }, { - "@id": "https://www.obofoundry.org/ontology/tto" + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/nmr" + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/clao" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/cmf" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT" }, { - "@id": "https://www.obofoundry.org/ontology/wbphenotype" + "@id": "https://bioregistry.io/metaregistry/biocontext/HDR" }, { - "@id": "https://www.obofoundry.org/ontology/epo" + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN" }, { - "@id": "https://www.obofoundry.org/ontology/mao" + "@id": "https://bioregistry.io/metaregistry/biocontext/GO" }, { - "@id": "https://www.obofoundry.org/ontology/xao" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA" }, { - "@id": "https://www.obofoundry.org/ontology/nomen" + "@id": "https://bioregistry.io/metaregistry/biocontext/skos" }, { - "@id": "https://www.obofoundry.org/ontology/mo" + "@id": "https://bioregistry.io/metaregistry/biocontext/APD" }, { - "@id": "https://www.obofoundry.org/ontology/rnao" + "@id": "https://bioregistry.io/metaregistry/biocontext/VO" }, { - "@id": "https://www.obofoundry.org/ontology/kisao" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE" }, { - "@id": "https://www.obofoundry.org/ontology/plana" + "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET" }, { - "@id": "https://www.obofoundry.org/ontology/labo" + "@id": "https://bioregistry.io/metaregistry/biocontext/UO" }, { - "@id": "https://www.obofoundry.org/ontology/phipo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CIO" }, { - "@id": "https://www.obofoundry.org/ontology/wbls" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL" }, { - "@id": "https://www.obofoundry.org/ontology/obib" + "@id": "https://bioregistry.io/metaregistry/biocontext/WormBase" }, { - "@id": "https://www.obofoundry.org/ontology/rs" + "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB" }, { - "@id": "https://www.obofoundry.org/ontology/cido" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS" }, { - "@id": "https://www.obofoundry.org/ontology/bootstrep" + "@id": "https://bioregistry.io/metaregistry/biocontext/RS" }, { - "@id": "https://www.obofoundry.org/ontology/cro" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNII" }, { - "@id": "https://www.obofoundry.org/ontology/pw" + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS" }, { - "@id": "https://www.obofoundry.org/ontology/symp" + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION" }, { - "@id": "https://www.obofoundry.org/ontology/zeco" + "@id": "https://bioregistry.io/metaregistry/biocontext/REX" }, { - "@id": "https://www.obofoundry.org/ontology/obi" + "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO" }, { - "@id": "https://www.obofoundry.org/ontology/mat" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PROTIST" }, { - "@id": "https://www.obofoundry.org/ontology/sibo" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG" }, { - "@id": "https://www.obofoundry.org/ontology/dpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA" }, { - "@id": "https://www.obofoundry.org/ontology/aero" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB" }, { - "@id": "https://www.obofoundry.org/ontology/spd" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.FAMILY" }, { - "@id": "https://www.obofoundry.org/ontology/gro" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMP" }, { - "@id": "https://www.obofoundry.org/ontology/emapa" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZP" }, { - "@id": "https://www.obofoundry.org/ontology/emap" + "@id": "https://bioregistry.io/metaregistry/biocontext/CRO" }, { - "@id": "https://www.obofoundry.org/ontology/chiro" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS" }, { - "@id": "https://www.obofoundry.org/ontology/fbbi" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/apo" + "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB" }, { - "@id": "https://www.obofoundry.org/ontology/upa" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFMO" }, { - "@id": "https://www.obofoundry.org/ontology/nif_dysfunction" + "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME" }, { - "@id": "https://www.obofoundry.org/ontology/propreo" + "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO" }, { - "@id": "https://www.obofoundry.org/ontology/ontoneo" + "@id": "https://bioregistry.io/metaregistry/biocontext/RO" }, { - "@id": "https://www.obofoundry.org/ontology/to" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAMEO" }, { - "@id": "https://www.obofoundry.org/ontology/nbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/void" }, { - "@id": "https://www.obofoundry.org/ontology/gaz" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOID" }, { - "@id": "https://www.obofoundry.org/ontology/ro" + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/opl" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC" }, { - "@id": "https://www.obofoundry.org/ontology/ypo" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE" }, { - "@id": "https://www.obofoundry.org/ontology/pdro" + "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX" }, { - "@id": "https://www.obofoundry.org/ontology/tahh" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS" }, { - "@id": "https://www.obofoundry.org/ontology/uo" + "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO" }, { - "@id": "https://www.obofoundry.org/ontology/bco" + "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY" }, { - "@id": "https://www.obofoundry.org/ontology/vhog" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX" }, { - "@id": "https://www.obofoundry.org/ontology/upheno" + "@id": "https://bioregistry.io/metaregistry/biocontext/EFO" }, { - "@id": "https://www.obofoundry.org/ontology/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN" }, { - "@id": "https://www.obofoundry.org/ontology/mp" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ" }, { - "@id": "https://www.obofoundry.org/ontology/chebi" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL" }, { - "@id": "https://www.obofoundry.org/ontology/vt" + "@id": "https://bioregistry.io/metaregistry/biocontext/PGX" }, { - "@id": "https://www.obofoundry.org/ontology/apollo_sv" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt" }, { - "@id": "https://www.obofoundry.org/ontology/hancestro" + "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB" }, { - "@id": "https://www.obofoundry.org/ontology/uberon" + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS" }, { - "@id": "https://www.obofoundry.org/ontology/fao" + "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL" }, { - "@id": "https://www.obofoundry.org/ontology/dron" + "@id": "https://bioregistry.io/metaregistry/biocontext/EO" }, { - "@id": "https://www.obofoundry.org/ontology/gecko" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS" }, { - "@id": "https://www.obofoundry.org/ontology/ev" + "@id": "https://bioregistry.io/metaregistry/biocontext/CMO" }, { - "@id": "https://www.obofoundry.org/ontology/ehdaa2" + "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop" }, { - "@id": "https://www.obofoundry.org/ontology/ncbitaxon" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER" }, { - "@id": "https://www.obofoundry.org/ontology/ico" + "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP" }, { - "@id": "https://www.obofoundry.org/ontology/hao" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB" }, { - "@id": "https://www.obofoundry.org/ontology/omp" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY" }, { - "@id": "https://www.obofoundry.org/ontology/amphx" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS" }, { - "@id": "https://www.obofoundry.org/ontology/ncro" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWH" }, { - "@id": "https://www.obofoundry.org/ontology/ato" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE" }, { - "@id": "https://www.obofoundry.org/ontology/ecto" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL" }, { - "@id": "https://www.obofoundry.org/ontology/plo" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM" }, { - "@id": "https://www.obofoundry.org/ontology/mpio" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME" }, { - "@id": "https://www.obofoundry.org/ontology/bila" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC" }, { - "@id": "https://www.obofoundry.org/ontology/mco" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF" }, { - "@id": "https://www.obofoundry.org/ontology/clo" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY" }, { - "@id": "https://www.obofoundry.org/ontology/sbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHMETABOLITE" }, { - "@id": "https://www.obofoundry.org/ontology/pgdso" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.CDS" }, { - "@id": "https://www.obofoundry.org/ontology/swo" + "@id": "https://bioregistry.io/metaregistry/biocontext/XL" }, { - "@id": "https://www.obofoundry.org/ontology/nif_grossanatomy" + "@id": "https://bioregistry.io/metaregistry/biocontext/MZSPEC" }, { - "@id": "https://www.obofoundry.org/ontology/tads" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB" }, { - "@id": "https://www.obofoundry.org/ontology/mpath" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER" }, { - "@id": "https://www.obofoundry.org/ontology/one" + "@id": "https://bioregistry.io/metaregistry/biocontext/FMA" }, { - "@id": "https://www.obofoundry.org/ontology/olatdv" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD" }, { - "@id": "https://www.obofoundry.org/ontology/psdo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS" }, { - "@id": "https://www.obofoundry.org/ontology/bto" + "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL" }, { - "@id": "https://www.obofoundry.org/ontology/proco" + "@id": "https://bioregistry.io/metaregistry/biocontext/AEO" }, { - "@id": "https://www.obofoundry.org/ontology/ohd" + "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY" }, { - "@id": "https://www.obofoundry.org/ontology/dc_cl" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY" }, { - "@id": "https://www.obofoundry.org/ontology/cto" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR" }, { - "@id": "https://www.obofoundry.org/ontology/eupath" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION" }, { - "@id": "https://www.obofoundry.org/ontology/fypo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CDD" }, { - "@id": "https://www.obofoundry.org/ontology/iceo" + "@id": "https://bioregistry.io/metaregistry/biocontext/BCO" }, { - "@id": "https://www.obofoundry.org/ontology/iao" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE" }, { - "@id": "https://www.obofoundry.org/ontology/pato" + "@id": "https://bioregistry.io/metaregistry/biocontext/YID" }, { - "@id": "https://www.obofoundry.org/ontology/imr" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION" }, { - "@id": "https://www.obofoundry.org/ontology/nif_cell" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO" }, { - "@id": "https://www.obofoundry.org/ontology/ecocore" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGN" }, { - "@id": "https://www.obofoundry.org/ontology/chmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA" }, { - "@id": "https://www.obofoundry.org/ontology/ma" + "@id": "https://bioregistry.io/metaregistry/biocontext/OCI" }, { - "@id": "https://www.obofoundry.org/ontology/fbcv" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE" }, { - "@id": "https://www.obofoundry.org/ontology/cl" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB" }, { - "@id": "https://www.obofoundry.org/ontology/miro" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP" }, { - "@id": "https://www.obofoundry.org/ontology/agro" + "@id": "https://bioregistry.io/metaregistry/biocontext/MGI" }, { - "@id": "https://www.obofoundry.org/ontology/ons" + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN" }, { - "@id": "https://www.obofoundry.org/ontology/geno" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS" }, { - "@id": "https://www.obofoundry.org/ontology/rex" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPA" }, { - "@id": "https://www.obofoundry.org/ontology/aao" + "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST" }, { - "@id": "https://www.obofoundry.org/ontology/ppo" + "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE" }, { - "@id": "https://www.obofoundry.org/ontology/fma" + "@id": "https://bioregistry.io/metaregistry/biocontext/IPR" }, { - "@id": "https://www.obofoundry.org/ontology/omo" + "@id": "https://bioregistry.io/metaregistry/biocontext/IPI" }, { - "@id": "https://www.obofoundry.org/ontology/scdo" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBA" }, { - "@id": "https://www.obofoundry.org/ontology/xco" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND" }, { - "@id": "https://www.obofoundry.org/ontology/aeo" + "@id": "https://bioregistry.io/metaregistry/biocontext/MP" }, { - "@id": "https://www.obofoundry.org/ontology/iev" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT" }, { - "@id": "https://www.obofoundry.org/ontology/htn" + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT" }, { - "@id": "https://www.obofoundry.org/ontology/mmusdv" + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE" }, { - "@id": "https://www.obofoundry.org/ontology/lipro" + "@id": "https://bioregistry.io/metaregistry/biocontext/APO" }, { - "@id": "https://www.obofoundry.org/ontology/hp" + "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS" }, { - "@id": "https://www.obofoundry.org/ontology/vsao" + "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO" }, { - "@id": "https://www.obofoundry.org/ontology/xlmod" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST" }, { - "@id": "https://www.obofoundry.org/ontology/ehdaa" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP" }, { - "@id": "https://www.obofoundry.org/ontology/ddpheno" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE" }, { - "@id": "https://www.obofoundry.org/ontology/ms" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB" }, { - "@id": "https://www.obofoundry.org/ontology/ipr" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARK" }, { - "@id": "https://www.obofoundry.org/ontology/cdno" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS" }, { - "@id": "https://www.obofoundry.org/ontology/aro" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE" }, { - "@id": "https://www.obofoundry.org/ontology/tao" + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL" }, { - "@id": "https://www.obofoundry.org/ontology/ido" + "@id": "https://bioregistry.io/metaregistry/biocontext/CMF" }, { - "@id": "https://www.obofoundry.org/ontology/pao" + "@id": "https://bioregistry.io/metaregistry/biocontext/ADW" }, { - "@id": "https://www.obofoundry.org/ontology/pcl" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS" }, { - "@id": "https://www.obofoundry.org/ontology/clyh" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBI" }, { - "@id": "https://www.obofoundry.org/ontology/hsapdv" + "@id": "https://bioregistry.io/metaregistry/biocontext/OPB" }, { - "@id": "https://www.obofoundry.org/ontology/cvdo" + "@id": "https://bioregistry.io/metaregistry/biocontext/YPO" }, { - "@id": "https://www.obofoundry.org/ontology/ino" + "@id": "https://bioregistry.io/metaregistry/biocontext/STATO" }, { - "@id": "https://www.obofoundry.org/ontology/sao" + "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB" }, { - "@id": "https://www.obofoundry.org/ontology/caro" + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT" }, { - "@id": "https://www.obofoundry.org/ontology/wbbt" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH" }, { - "@id": "https://www.obofoundry.org/ontology/tgma" + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3" }, { - "@id": "https://www.obofoundry.org/ontology/ogsf" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY" }, { - "@id": "https://www.obofoundry.org/ontology/fix" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL" }, { - "@id": "https://www.obofoundry.org/ontology/oba" + "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME" }, { - "@id": "https://www.obofoundry.org/ontology/hso" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN" }, { - "@id": "https://www.obofoundry.org/ontology/ado" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN" }, { - "@id": "https://www.obofoundry.org/ontology/mfo" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM" }, { - "@id": "https://www.obofoundry.org/ontology/sepio" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI" }, { - "@id": "https://www.obofoundry.org/ontology/stato" + "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR" }, { - "@id": "https://www.obofoundry.org/ontology/aism" + "@id": "https://bioregistry.io/metaregistry/biocontext/GDC" }, { - "@id": "https://www.obofoundry.org/ontology/vario" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN" }, { - "@id": "https://www.obofoundry.org/ontology/mondo" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGI" }, { - "@id": "https://www.obofoundry.org/ontology/obcs" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDO" }, { - "@id": "https://www.obofoundry.org/ontology/exo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE" }, { - "@id": "https://www.obofoundry.org/ontology/cdao" + "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO" }, { - "@id": "https://www.obofoundry.org/ontology/mf" + "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS" }, { - "@id": "https://www.obofoundry.org/ontology/ohpi" + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT" }, { - "@id": "https://www.obofoundry.org/ontology/envo" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRID" }, { - "@id": "https://www.obofoundry.org/ontology/colao" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT" }, { - "@id": "https://www.obofoundry.org/ontology/omiabis" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA" }, { - "@id": "https://www.obofoundry.org/ontology/ecao" + "@id": "https://bioregistry.io/metaregistry/biocontext/ELM" }, { - "@id": "https://www.obofoundry.org/ontology/vto" + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION" }, { - "@id": "https://www.obofoundry.org/ontology/mamo" + "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP" }, { - "@id": "https://www.obofoundry.org/ontology/cteno" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO" }, { - "@id": "https://www.obofoundry.org/ontology/pd_st" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS" }, { - "@id": "https://www.obofoundry.org/ontology/go" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX" }, { - "@id": "https://www.obofoundry.org/ontology/mfoem" + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012" }, { - "@id": "https://www.obofoundry.org/ontology/loggerhead" + "@id": "https://bioregistry.io/metaregistry/biocontext/owl" }, { - "@id": "https://www.obofoundry.org/ontology/mcro" + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE" }, { - "@id": "https://www.obofoundry.org/ontology/cio" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF" }, { - "@id": "https://www.obofoundry.org/ontology/tahe" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome" }, { - "@id": "https://www.obofoundry.org/ontology/ceph" + "@id": "https://bioregistry.io/metaregistry/biocontext/SISU" }, { - "@id": "https://www.obofoundry.org/ontology/mirnao" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO" }, { - "@id": "https://www.obofoundry.org/ontology/cob" + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE" }, { - "@id": "https://www.obofoundry.org/ontology/vbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMR" }, { - "@id": "https://www.obofoundry.org/ontology/mro" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD" }, { - "@id": "https://www.obofoundry.org/ontology/ehda" + "@id": "https://bioregistry.io/metaregistry/biocontext/NDC" }, { - "@id": "https://www.obofoundry.org/ontology/ddanat" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT" }, { - "@id": "https://www.obofoundry.org/ontology/peco" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.TAXON" }, { - "@id": "https://www.obofoundry.org/ontology/oarcs" + "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl" }, { - "@id": "https://www.obofoundry.org/ontology/micro" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND" }, { - "@id": "https://www.obofoundry.org/ontology/omrse" + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND" }, { - "@id": "https://www.obofoundry.org/ontology/mfmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY" }, { - "@id": "https://www.obofoundry.org/ontology/disdriv" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY" }, { - "@id": "https://www.obofoundry.org/ontology/rbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY" }, { - "@id": "https://www.obofoundry.org/ontology/txpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/EPD" }, { - "@id": "https://www.obofoundry.org/ontology/flu" + "@id": "https://bioregistry.io/metaregistry/biocontext/BAO" }, { - "@id": "https://www.obofoundry.org/ontology/flopo" + "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE" }, { - "@id": "https://www.obofoundry.org/ontology/pso" + "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms" }, { - "@id": "https://www.obofoundry.org/ontology/eo" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI" }, { - "@id": "https://www.obofoundry.org/ontology/ovae" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR" }, { - "@id": "https://www.obofoundry.org/ontology/ogg" + "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO" }, { - "@id": "https://www.obofoundry.org/ontology/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.REACTION" }, { - "@id": "https://www.obofoundry.org/ontology/pr" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL" }, { - "@id": "https://www.obofoundry.org/ontology/omit" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT" }, { - "@id": "https://www.obofoundry.org/ontology/adw" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT" }, { - "@id": "https://www.obofoundry.org/ontology/mmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB" }, { - "@id": "https://www.obofoundry.org/ontology/zfs" + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE" }, { - "@id": "https://www.obofoundry.org/ontology/ogi" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB" }, { - "@id": "https://www.obofoundry.org/ontology/poro" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB" }, { - "@id": "https://www.obofoundry.org/ontology/t4fs" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO" }, { - "@id": "https://www.obofoundry.org/ontology/foodon" + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC" }, { - "@id": "https://www.obofoundry.org/ontology/taxrank" + "@id": "https://bioregistry.io/metaregistry/biocontext/SPD" }, { - "@id": "https://www.obofoundry.org/ontology/maxo" + "@id": "https://bioregistry.io/metaregistry/biocontext/dcat" }, { - "@id": "https://www.obofoundry.org/ontology/opmi" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID" }, { - "@id": "https://www.obofoundry.org/ontology/duo" + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY" }, { - "@id": "https://www.obofoundry.org/ontology/pco" + "@id": "https://bioregistry.io/metaregistry/biocontext/ICD" }, { - "@id": "https://www.obofoundry.org/ontology/cmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE" }, { - "@id": "https://www.obofoundry.org/ontology/zea" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYMAP" }, { - "@id": "https://www.obofoundry.org/ontology/ngbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK" }, { - "@id": "https://www.obofoundry.org/ontology/cheminf" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM" }, { - "@id": "https://www.obofoundry.org/ontology/mi" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER" }, { - "@id": "https://www.obofoundry.org/ontology/bfo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB" }, { - "@id": "https://www.obofoundry.org/ontology/xpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE" }, { - "@id": "https://www.obofoundry.org/ontology/oae" + "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK" }, { - "@id": "https://www.obofoundry.org/ontology/mod" + "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM" }, { - "@id": "https://www.obofoundry.org/ontology/trans" + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE" }, { - "@id": "https://www.obofoundry.org/ontology/resid" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY" }, { - "@id": "https://www.obofoundry.org/ontology/gno" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE" }, { - "@id": "https://www.obofoundry.org/ontology/ontoavida" + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSBANK" }, { - "@id": "https://www.obofoundry.org/ontology/epio" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC" }, { - "@id": "https://www.obofoundry.org/ontology/eco" + "@id": "https://bioregistry.io/metaregistry/biocontext/TO" }, { - "@id": "https://www.obofoundry.org/ontology/fbbt" + "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" }, { - "@id": "https://www.obofoundry.org/ontology/zp" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN" }, { - "@id": "https://www.obofoundry.org/ontology/mfomd" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN" }, { - "@id": "https://www.obofoundry.org/ontology/ero" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY" }, { - "@id": "https://www.obofoundry.org/ontology/hom" + "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase" }, { - "@id": "https://www.obofoundry.org/ontology/geo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PX" }, { - "@id": "https://www.obofoundry.org/ontology/dideo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS" }, { - "@id": "https://www.obofoundry.org/ontology/lepao" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAO" }, { - "@id": "https://www.obofoundry.org/ontology/habronattus" + "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB" }, { - "@id": "https://www.obofoundry.org/ontology/sep" + "@id": "https://bioregistry.io/metaregistry/biocontext/foaf" }, { - "@id": "https://www.obofoundry.org/ontology/genepio" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.COLLECTION" }, { - "@id": "https://www.obofoundry.org/ontology/miapa" + "@id": "https://bioregistry.io/metaregistry/biocontext/XAO" }, { - "@id": "https://www.obofoundry.org/ontology/fobi" + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA" }, { - "@id": "https://www.obofoundry.org/ontology/ogms" + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE" }, { - "@id": "https://www.obofoundry.org/ontology/zfa" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN" }, { - "@id": "https://www.obofoundry.org/ontology/ornaseq" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA" }, { - "@id": "https://www.obofoundry.org/ontology/vo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC" }, { - "@id": "https://www.obofoundry.org/ontology/dinto" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT" }, { - "@id": "https://www.obofoundry.org/ontology/oostt" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB" }, { - "@id": "https://www.obofoundry.org/ontology/fideo" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OBO Foundry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://www.obofoundry.org/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "CHEBI" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://www.obofoundry.org/ontology/$1" - }, - "https://bioregistry.io/schema/#0000007": { - "@value": "http://purl.obolibrary.org/obo/$1_$2" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/peco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.89e853", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/dailymed", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DailyMed" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/IEV" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB" }, { - "@id": "https://registry.identifiers.org/registry/dailymed" + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND" }, { - "@id": "https://registry.bio2kg.org/resource/dailymed" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dailymed.nlm.nih.gov/dailymed/" - }, - "https://bioregistry.io/schema/#0000005": "973a9333-fec7-46dd-8eb5-25738f06ee54", - "https://bioregistry.io/schema/#0000006": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=973a9333-fec7-46dd-8eb5-25738f06ee54" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dailymed" - } - }, - { - "@id": "https://orcid.org/0000-0002-2916-3423", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maria Gould" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "maria.gould@ucop.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/go.rule", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB" }, { - "@id": "https://bioregistry.io/registry/go" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Rules" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/geneontology/go-site/tree/master/metadata/rules" - }, - "https://bioregistry.io/schema/#0000005": "0000004", - "https://bioregistry.io/schema/#0000006": "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/go.rule:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-0000004.md" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "go.rule" - } - }, - { - "@id": "http://aber-owl.net/ontology/MESH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mmusdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.metagenome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/cdno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MPATH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PORO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/wikidata", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/wikidata.property" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wikidata" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/EV" + }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DISEASE" }, { - "@id": "https://registry.identifiers.org/registry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA" }, { - "@id": "https://fairsharing.org/FAIRsharing.6s749p" + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI" }, { - "@id": "https://bartoc.org/en/node/1940" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA" + "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000567" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/APHIDBASE.TRANSCRIPT" + }, { - "@value": "metabolomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND" }, { - "@value": "subject agnostic" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST" }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/dc" }, { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wikidata.org/" - }, - "https://bioregistry.io/schema/#0000005": "Q2207226", - "https://bioregistry.io/schema/#0000006": "http://www.wikidata.org/entity/$1", - "https://bioregistry.io/schema/#0000008": "^(Q|P)\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO" + }, { - "@value": "WD_Entity" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY" }, { - "@value": "wd" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.wikidata.org/entity/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.wikidata.org/entity/Q2207226" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wikidata" - } - }, - { - "@id": "http://aber-owl.net/ontology/OLATDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/fobi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Food-Biomarker Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.ontobee.org/ontology/FOBI" + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOBI" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT" }, { - "@id": "https://www.obofoundry.org/ontology/fobi" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE" }, { - "@id": "http://aber-owl.net/ontology/FOBI" + "@id": "https://bioregistry.io/metaregistry/biocontext/PORO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FOBI" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology" - }, - "https://bioregistry.io/schema/#0000005": "030719", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOBI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4,6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fobi.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH" }, { - "@id": "https://bioregistry.io/registry/chebi" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6466-877X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOBI_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FOBI_030719" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fobi" - } - }, - { - "@id": "https://bioregistry.io/registry/hcvdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hepatitis C Virus Database Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/hcv" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB" + "@id": "https://bioregistry.io/metaregistry/biocontext/MDM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION" }, { - "@id": "https://registry.identifiers.org/registry/hcvdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://euhcvdb.ibcp.fr/euHCVdb/" - }, - "https://bioregistry.io/schema/#0000005": "M58335", - "https://bioregistry.io/schema/#0000006": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1", - "https://bioregistry.io/schema/#0000008": "^M\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=M58335" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hcvdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/paleodb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/gendis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kj3m5n", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/chebi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/so", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sequence types and features ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.6bc7h9" + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/SO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROPREO" }, { - "@id": "http://www.ontobee.org/ontology/SO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PINA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SO" + "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE" }, { - "@id": "https://registry.bio2kg.org/resource/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE" }, { - "@id": "http://aber-owl.net/ontology/SO" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSLIPID" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION" }, { - "@id": "https://registry.identifiers.org/registry/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE" }, { - "@id": "https://www.obofoundry.org/ontology/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SO" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIR" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBANK" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL" }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.SYMBOL" }, { - "@value": "rna" + "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sequenceontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "0001157", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/so.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/pcl" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0831-6427" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SO_0001157" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "so" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bindingdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000003", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A type for entries in the Bioregistry's collections" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Collection" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ribocentre", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ribocentre is designed to contain comprehensive information of all natural ribozymes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ribocentre/ribocentre.github.io" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ribocentre" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ribocentre.org/" - }, - "https://bioregistry.io/schema/#0000005": "hammer", - "https://bioregistry.io/schema/#0000006": "https://www.ribocentre.org/docs/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2121-365X" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ribocenter" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ribocentre.org/docs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ribocentre.org/docs/hammer" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ribocentre" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.a0k4cd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/noaa", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for a species on the noaa fisheries website", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NOAA Fisheries Species Directory" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P6049" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.fisheries.noaa.gov/species-directory" - }, - "https://bioregistry.io/schema/#0000005": "long-finned-pilot-whale", - "https://bioregistry.io/schema/#0000006": "https://www.fisheries.noaa.gov/species/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\-[a-z]+)*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.fisheries.noaa.gov/species/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.fisheries.noaa.gov/species/long-finned-pilot-whale" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "noaa" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0003-2497-2210", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": " Christos Louis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "louis@imbb.forth.gr" - } - }, - { - "@id": "https://bioregistry.io/registry/hso", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SVA-SE/HSO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Surveillance Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/HSO" + "@id": "https://bioregistry.io/metaregistry/biocontext/HAO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH" }, { - "@id": "http://www.ontobee.org/ontology/HSO" + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI" }, { - "@id": "http://aber-owl.net/ontology/HSO" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEX" }, { - "@id": "https://www.obofoundry.org/ontology/hso" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOI" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org/hso" - }, - "https://bioregistry.io/schema/#0000005": "0000062", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/hso.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://bioregistry.io/metaregistry/biocontext/MINID" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://bioregistry.io/metaregistry/biocontext/BTO" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB" }, { - "@id": "https://bioregistry.io/registry/obi" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8638-8525" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HSO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HSO_0000062" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hso" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NGL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/doid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DiseaseOntology/HumanDiseaseOntology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Disease Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P699" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP" }, { - "@id": "https://registry.identifiers.org/registry/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY" }, { - "@id": "https://fairsharing.org/FAIRsharing.8b6wfq" + "@id": "https://bioregistry.io/metaregistry/biocontext/DATF" }, { - "@id": "http://aber-owl.net/ontology/DOID" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN" }, { - "@id": "https://registry.bio2kg.org/resource/do" + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA" }, { - "@id": "https://www.obofoundry.org/ontology/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM" }, { - "@id": "http://www.ontobee.org/ontology/DOID" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOID" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE" }, { - "@id": "https://bartoc.org/en/node/576" + "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DOID" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "disease" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/biocontext/RBK" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAT" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS" }, { - "@value": "human" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.disease-ontology.org" - }, - "https://bioregistry.io/schema/#0000005": "0110974", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DOID_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/doid.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv" }, { - "@id": "https://bioregistry.io/registry/clo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8910-9851" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "do" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DOID_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DOID_0110974" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "doid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org" - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment" + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap" + "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain" + "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd" + "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl" + "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site" + "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse" + "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.KINASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc" + "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus" + "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive" + "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki" + "@id": "https://bioregistry.io/metaregistry/biocontext/EPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain" + "@id": "https://bioregistry.io/metaregistry/biocontext/NUCLEARBD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/SCRETF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element" + "@id": "https://bioregistry.io/metaregistry/biocontext/STAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials" + "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule" + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome" + "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.YEAST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo" + "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase" + "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref" + "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc" + "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod" + "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin" + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl" + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride" + "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst" + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc" + "@id": "https://bioregistry.io/metaregistry/biocontext/JAX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd" + "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda" + "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CGD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic" + "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope" + "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/idot" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints" + "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene" + "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey" + "@id": "https://bioregistry.io/metaregistry/biocontext/PW" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco" + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor" + "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine" + "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref" + "@id": "https://bioregistry.io/metaregistry/biocontext/NGL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn" + "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox" + "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs" + "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy" + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario" + "@id": "https://bioregistry.io/metaregistry/biocontext/VTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma" + "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms" + "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc" + "@id": "https://bioregistry.io/metaregistry/biocontext/PPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage" + "@id": "https://bioregistry.io/metaregistry/biocontext/ICO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg" + "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid" + "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard" + "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb" + "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway" + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon" + "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode" + "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop" + "@id": "https://bioregistry.io/metaregistry/biocontext/CPC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms" + "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder" + "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway" + "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl" + "@id": "https://bioregistry.io/metaregistry/biocontext/CARO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed" + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.EST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor" + "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa" + "@id": "https://bioregistry.io/metaregistry/biocontext/CCO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas" + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage" + "@id": "https://bioregistry.io/metaregistry/biocontext/LPT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db" + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/AERO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt" + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical" + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript" + "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp" + "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq" + "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank" + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid" + "@id": "https://bioregistry.io/metaregistry/biocontext/MINT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe" + "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary" + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROVAULT.IMAGE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus" + "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript" + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr" + "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao" + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp" + "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.STUDY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3" + "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress" + "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study" + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb" + "@id": "https://bioregistry.io/metaregistry/biocontext/ERO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc" + "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd" + "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target" + "@id": "https://bioregistry.io/metaregistry/biocontext/pav" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target" + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino" + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSCOPE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer" + "@id": "https://bioregistry.io/metaregistry/biocontext/FIX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc" + "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons" + "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv" + "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards" + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank" + "@id": "https://bioregistry.io/metaregistry/biocontext/FAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data" + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/NMR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri" + "@id": "https://bioregistry.io/metaregistry/biocontext/JWS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa" + "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome" + "@id": "https://bioregistry.io/metaregistry/biocontext/CL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions" + "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association" + "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc" + "@id": "https://bioregistry.io/metaregistry/biocontext/PECO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct" + "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam" + "@id": "https://bioregistry.io/metaregistry/biocontext/MS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra" + "@id": "https://bioregistry.io/metaregistry/biocontext/IAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor" + "@id": "https://bioregistry.io/metaregistry/biocontext/NARCIS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp" + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/OGG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat" + "@id": "https://bioregistry.io/metaregistry/biocontext/OHD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform" + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/prov" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack" + "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand" + "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS.PLATFORM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so" + "@id": "https://bioregistry.io/metaregistry/biocontext/PATO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast" + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp" + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go" + "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2013" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank" + "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg" + "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola" + "@id": "https://bioregistry.io/metaregistry/biocontext/PCO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx" + "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla" + "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/VT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa" + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc" + "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext/oa" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/BILA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum" + "@id": "https://bioregistry.io/metaregistry/biocontext/TCDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways" + "@id": "https://bioregistry.io/metaregistry/biocontext/FLU" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/RRID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps" + "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte" + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb" + "@id": "https://bioregistry.io/metaregistry/biocontext/CST.AB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice" + "@id": "https://bioregistry.io/metaregistry/biocontext/MA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd" + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc" + "@id": "https://bioregistry.io/metaregistry/biocontext/ERV" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb" + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid" + "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy" + "@id": "https://bioregistry.io/metaregistry/biocontext/TADS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue" + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi" + "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid" + "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet" + "@id": "https://bioregistry.io/metaregistry/biocontext/rdf" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna" + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase" + "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model" + "@id": "https://bioregistry.io/metaregistry/biocontext/DARC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc" + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia" + "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase" + "@id": "https://bioregistry.io/metaregistry/biocontext/NASC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl" + "@id": "https://bioregistry.io/metaregistry/biocontext/RESID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp" + "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers" + "@id": "https://bioregistry.io/metaregistry/biocontext/MONDO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver" + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo" + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase" + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria" + "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs" + "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb" + "@id": "https://bioregistry.io/metaregistry/biocontext/OAE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl" + "@id": "https://bioregistry.io/metaregistry/biocontext/LRG" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu" + "@id": "https://bioregistry.io/metaregistry/biocontext/xml" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect" + "@id": "https://bioregistry.io/metaregistry/biocontext/SBO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile" + "@id": "https://bioregistry.io/metaregistry/biocontext/TGD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam" + "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog" + "@id": "https://bioregistry.io/metaregistry/biocontext/SAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id" + "@id": "https://bioregistry.io/metaregistry/biocontext/DBD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist" + "@id": "https://bioregistry.io/metaregistry/biocontext/MO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est" + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc" + "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway" + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop" + "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr" + "@id": "https://bioregistry.io/metaregistry/biocontext/PO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver" + "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal" + "@id": "https://bioregistry.io/metaregistry/biocontext/SO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/OTL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb" + "@id": "https://bioregistry.io/metaregistry/biocontext/DICTYBASE.GENE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb" + "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind" + "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo" + "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen" + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/SMART" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase" + "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta" + "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma" + "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/CST" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf" + "@id": "https://bioregistry.io/metaregistry/biocontext/BFO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code" + "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd" + "@id": "https://bioregistry.io/metaregistry/biocontext/CSA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex" + "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec" + "@id": "https://bioregistry.io/metaregistry/biocontext/BRENDA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra" + "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex" + "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns" + "@id": "https://bioregistry.io/metaregistry/biocontext/RefSeq" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance" + "@id": "https://bioregistry.io/metaregistry/biocontext/DrugBank" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx" + "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioContext" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://github.com/prefixcommons/biocontext" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "CHEBI" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://bioregistry.io/metaregistry/biocontext/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + } + }, + { + "@id": "https://orcid.org/0000-0001-6098-6412", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wyeth W. Wasserman" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wyeth@cmmt.ubc.ca" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/CRISP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://orcid.org/0000-0003-4308-6337", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ana Rath" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ordo.orphanet@inserm.fr" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011906", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0130", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/genepio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0001-5705-7831", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot" + "@id": "https://bioregistry.io/registry/adcad" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec" + "@id": "https://bioregistry.io/registry/mosaic" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber" - }, + "@id": "https://bioregistry.io/registry/hoip" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Harry Caufield" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "j.harry.caufield@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ised", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/spd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/spider-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Spider Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/SPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo" + "@id": "http://www.wikidata.org/entity/P4537" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive" + "@id": "https://bioportal.bioontology.org/ontologies/SPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb" + "@id": "https://fairsharing.org/FAIRsharing.yecp83" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn" + "@id": "https://www.obofoundry.org/ontology/spd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie" + "@id": "http://aber-owl.net/ontology/SPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology" + "@id": "http://www.ontobee.org/ontology/SPD" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi" - }, + "@id": "https://registry.bio2kg.org/resource/spdo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb" + "@value": "obo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po" + "@value": "spider" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h" + "@value": "life science" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes" - }, + "@value": "anatomy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://research.amnh.org/atol/files/" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SPD_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/spd.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0358-0130" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SPD_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/SPD_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "spd" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CLO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/gwascentral.marker", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GWAS Central Marker" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase" + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study" - }, + "@id": "https://registry.identifiers.org/registry/gwascentral.marker" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.gwascentral.org/markers" + }, + "https://bioregistry.io/schema/#0000005": "HGVM15354", + "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/marker/$1", + "https://bioregistry.io/schema/#0000008": "^HGVM\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/marker/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.gwascentral.org/marker/HGVM15354" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gwascentral.marker" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ligandexpo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hinv.locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/reo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/tis-lab/reagent-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Reagent Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.ontobee.org/ontology/REO" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/tis-lab/reagent-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000079", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/REO_$11", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/tis-lab/reagent-ontology/raw/master/reo/ontology_files/reo_pre-merged_or_reasoned_files/reo_reasoned_9-6-12.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1048-5019" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/reo:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/REO_00000791" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "reo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://orcid.org/0000-0002-8786-1756", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wes Schafer" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wes_schafer@merck.com" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0266", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/metacyc.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/GAZ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/pina", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Protein Interaction Network Analysis" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus" + "@id": "https://registry.identifiers.org/registry/pina" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc" + "@id": "https://fairsharing.org/FAIRsharing.7q4gsz" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/PINA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc" + "@value": "data visualization" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://cbg.garvan.unsw.edu.au/pina/" + }, + "https://bioregistry.io/schema/#0000005": "Q13485", + "https://bioregistry.io/schema/#0000006": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8876-128X" + }, + "https://bioregistry.io/schema/#0000024": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=Q13485" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pina" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bigg.metabolite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/dctypes", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dublin Core Types" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://dublincore.org/specifications/dublin-core/dcmi-terms/" + }, + "https://bioregistry.io/schema/#0000005": "Collection", + "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/dcmitype/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/dcmitype/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/dc/dcmitype/Collection" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dctypes" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jwra3e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pubchem.substance", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OLATDV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/foodb.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FooDB compound" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb" + "@id": "https://www.re3data.org/repository/r3d100012152" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb" + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo" + "@id": "http://www.wikidata.org/entity/P8117" }, { "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodb.compound" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene" - }, + "@id": "https://registry.identifiers.org/registry/foodb.compound" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://foodb.ca/" + }, + "https://bioregistry.io/schema/#0000005": "FDB002100", + "https://bioregistry.io/schema/#0000006": "http://foodb.ca/compounds/$1", + "https://bioregistry.io/schema/#0000008": "^FDB\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "foodb" + }, + "https://bioregistry.io/schema/#0000024": "http://foodb.ca/compounds/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://foodb.ca/compounds/FDB002100" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "foodb.compound" + } + }, + { + "@id": "https://registry.identifiers.org/registry/inchi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qe8tz8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/CHEBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/hl7.v3codesystem", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HL7 V2 Code Systems" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://terminology.hl7.org/codesystems-v2.html" + }, + "https://bioregistry.io/schema/#0000005": "AcknowledgementCondition", + "https://bioregistry.io/schema/#0000006": "https://terminology.hl7.org/CodeSystem-v3-$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://terminology.hl7.org/CodeSystem-v3-", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://terminology.hl7.org/CodeSystem-v3-AcknowledgementCondition" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hl7.v3codesystem" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/n2t", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Name-to-Thing" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://n2t.net" + }, + "https://bioregistry.io/schema/#0000005": "chebi", + "https://bioregistry.io/schema/#0000006": "https://n2t.net/$1:", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/n2t:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://n2t.net/chebi:" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "n2t" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0190", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/npo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sobolevnrm/npo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NanoParticle Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank" + "@id": "http://aber-owl.net/ontology/NPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol" + "@id": "https://bioportal.bioontology.org/ontologies/NPO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene" - }, + "@id": "https://fairsharing.org/FAIRsharing.vy0p71" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioportal.bioontology.org/ontologies/NPO" + }, + "https://bioregistry.io/schema/#0000005": "1731", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/npo#NPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/NPO/31/npo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5892-6506" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/npo#NPO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.bioontology.org/ontology/npo#NPO_1731" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "npo" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OPMI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/ised", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Influenza Sequence and Epitope Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/ised" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://influenza.korea.ac.kr" + }, + "https://bioregistry.io/schema/#0000005": "AY209920", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "ised" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mir", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/sitex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SitEx" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome" + "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc" + "@id": "https://fairsharing.org/FAIRsharing.5mr9c5" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus" + "@id": "https://registry.bio2kg.org/resource/sitex" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider" - }, + "@id": "https://registry.identifiers.org/registry/sitex" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr" + "@value": "structure" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb" + "@value": "domain" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp" + "@value": "sequence" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar" + "@value": "life science" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy" - }, + "@value": "eukaryotic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www-bionet.sscc.ru/sitex/" + }, + "https://bioregistry.io/schema/#0000005": "1000", + "https://bioregistry.io/schema/#0000006": "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www-bionet.sscc.ru/sitex/index.php?siteid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www-bionet.sscc.ru/sitex/index.php?siteid=1000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sitex" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3etvdn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_350", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ricenetdb.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/ncbitaxon" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Taxonomy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws" + "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb" + "@id": "http://www.wikidata.org/entity/P685" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo" + "@id": "http://edamontology.org/data_1179" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection" + "@id": "https://bartoc.org/en/node/509" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge" + "@id": "http://www.ontobee.org/ontology/NCBITaxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome" + "@id": "https://fairsharing.org/FAIRsharing.fj07xj" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide" + "@id": "https://www.obofoundry.org/ontology/ncbitaxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao" + "@id": "https://www.re3data.org/repository/r3d100010415" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp" + "@id": "https://registry.identifiers.org/registry/taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression" + "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon" + "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy" + "@id": "http://aber-owl.net/ontology/NCBITAXON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb" - }, + "@id": "https://registry.bio2kg.org/resource/taxonomy" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image" + "@value": "obo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref" + "@value": "structure" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px" + "@value": "phylogenetics" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene" + "@value": "taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd" + "@value": "dna" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido" + "@value": "classification" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker" + "@value": "life science" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/ncbitaxon" + }, + "https://bioregistry.io/schema/#0000005": "2170610", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCBITaxon_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ncbitaxon.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj" + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest" + "@id": "https://bioregistry.io/registry/pco" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid" + "@id": "https://bioregistry.io/registry/genepio" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase" + "@id": "https://bioregistry.io/registry/envo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb" + "@id": "https://bioregistry.io/registry/ons" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene" + "@id": "https://bioregistry.io/registry/chiro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly" + "@id": "https://bioregistry.io/registry/hso" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam" + "@id": "https://bioregistry.io/registry/clo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily" + "@id": "https://bioregistry.io/registry/vbo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp" - }, + "@id": "https://bioregistry.io/registry/mco" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9415-5104" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq" + "@value": "NCBI_Taxon_ID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment" + "@value": "NCBI Taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn" + "@value": "TAX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db" + "@value": "NCBITaxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw" + "@value": "NCBITaxonomyID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy" + "@value": "uniprot.taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds" + "@value": "taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection" + "@value": "TaxonomyID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod" + "@value": "taxid" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep" + "@value": "taxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications" + "@value": "NCBI_taxid" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Name-to-Thing" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://n2t.net" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "chebi" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://n2t.net/$1:" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCBITaxon_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02meqm098" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "https://n2t.net/$1:$2" + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/NCBITaxon_2170610" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7604-8041" + "https://bioregistry.io/schema/#0000029": { + "@value": "ncbitaxon" } }, { - "@id": "http://aber-owl.net/ontology/ECSO", + "@id": "https://fairsharing.org/FAIRsharing.g0a7s0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/sider.effect", + "@id": "https://www.re3data.org/repository/r3d100011232", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/scopus.publication", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dcat", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for a source/publication venue (journal, conference, etc) in Scopus", + "http://purl.org/dc/terms/description": "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scopus Publication" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/w3c/dxwg/" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1156" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Data Catalog" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/DCAT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dcat" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DCAT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h4j3qm" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "data management" + }, + { + "@value": "ontology" + }, + { + "@value": "subject agnostic" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.scopus.com/" + "@id": "https://www.w3.org/ns/dcat" + }, + "https://bioregistry.io/schema/#0000005": "Dataset", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/dcat#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/DCAT/2/dcat.owl" }, - "https://bioregistry.io/schema/#0000005": "16129", - "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/sourceid/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,11}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/sourceid/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9052-2854" + }, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/dcat#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.scopus.com/sourceid/16129" + "@id": "http://www.w3.org/ns/dcat#Dataset" }, "https://bioregistry.io/schema/#0000029": { - "@value": "scopus.publication" + "@value": "dcat" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase", + "@id": "https://registry.identifiers.org/registry/ena.embl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/oridb.sacch", + "@id": "https://bioregistry.io/registry/lgic", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae.", + "http://purl.org/dc/terms/description": "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OriDB Saccharomyces" + "@value": "Ligand-Gated Ion Channel database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH" + "@id": "https://registry.bio2kg.org/resource/lgicdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic" }, { - "@id": "https://registry.identifiers.org/registry/oridb.sacch" + "@id": "https://registry.identifiers.org/registry/lgic" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" + }, + { + "@value": "sequence" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cerevisiae.oridb.org/index.php" + "@id": "https://www.ebi.ac.uk/compneur-srv/LGICdb/LGICdb.php" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://cerevisiae.oridb.org/details.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cerevisiae.oridb.org/details.php?id=", + "https://bioregistry.io/schema/#0000005": "5HT3Arano", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/lgic:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://cerevisiae.oridb.org/details.php?id=1" + "@id": "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/5HT3Arano.php" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oridb.sacch" + "@value": "lgic" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6k0kwd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0003-3499-8262", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alejandra Gonzalez-Beltran" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "alejandra.gonzalez.beltran@gmail.com" } }, { - "@id": "http://www.ontobee.org/ontology/VTO", + "@id": "https://registry.bio2kg.org/resource/img.taxon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/biocyc", + "@id": "https://bioregistry.io/registry/soybase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms.", + "http://purl.org/dc/terms/description": "SoyBase is a repository for curated genetics, genomics and related data resources for soybean.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioCyc collection of metabolic pathway databases" + "@value": "SoyBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc" + "@id": "https://fairsharing.org/FAIRsharing.z4agsr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC" + "@id": "https://registry.identifiers.org/registry/soybase" }, { - "@id": "http://edamontology.org/data_2104" + "@id": "https://registry.bio2kg.org/resource/soy" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase" }, { - "@id": "https://registry.bio2kg.org/resource/biocyc" + "@id": "https://bioregistry.io/metaregistry/biocontext/SOYBASE" }, { - "@id": "https://www.uniprot.org/database/DB-0005" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase" }, { - "@id": "https://registry.identifiers.org/registry/biocyc" + "@id": "https://www.re3data.org/repository/r3d100010846" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "spider" }, { - "@value": "sequence" + "@value": "comparative genomics" }, { - "@value": "pathway" + "@value": "development" + }, + { + "@value": "plant breeding" + }, + { + "@value": "phenotype" + }, + { + "@value": "life science" + }, + { + "@value": "obo" + }, + { + "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://biocyc.org" + "@id": "http://soybase.org/" }, - "https://bioregistry.io/schema/#0000005": "ECOLI:CYT-D-UBIOX-CPLX", - "https://bioregistry.io/schema/#0000006": "http://biocyc.org/getid?id=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$", + "https://bioregistry.io/schema/#0000005": "BARC-013845-01256", + "https://bioregistry.io/schema/#0000006": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\-)?\\w+(\\-)?\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://biocyc.org/getid?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://biocyc.org/getid?id=ECOLI:CYT-D-UBIOX-CPLX" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biocyc" - } - }, - { - "@id": "https://bioregistry.io/registry/addexbio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AddexBio cell line products" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.addexbio.com/productshow?id=4" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2787-3955" }, - "https://bioregistry.io/schema/#0000005": "C0020004/4992", - "https://bioregistry.io/schema/#0000006": "https://www.addexbio.com/productdetail?pid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.addexbio.com/productdetail?pid=", + "https://bioregistry.io/schema/#0000024": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.addexbio.com/productdetail?pid=C0020004/4992" + "@id": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=BARC-013845-01256" }, "https://bioregistry.io/schema/#0000029": { - "@value": "addexbio" + "@value": "soybase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0003-3389-2191", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/inaturalist.observation" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre-Marie Allard" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://aber-owl.net/ontology/SAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0253", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/4dn.replicate", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database portal containing replicate experiments of different assays and samples", + "@id": "http://edamontology.org/data_2665", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "4D Nucleome Data Portal Experiment Replicate" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://data.4dnucleome.org/experiment-set-replicates/" - }, - "https://bioregistry.io/schema/#0000005": "4DNESWX1J3QU", - "https://bioregistry.io/schema/#0000006": "https://data.4dnucleome.org/experiment-set-replicates/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://data.4dnucleome.org/experiment-set-replicates/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://data.4dnucleome.org/experiment-set-replicates/4DNESWX1J3QU" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "4dn.replicate" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://www.ontobee.org/ontology/BAO", + "@id": "https://bioportal.bioontology.org/ontologies/OMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo", + "@id": "https://fairsharing.org/FAIRsharing.w6cxgb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/MMO", + "@id": "https://fairsharing.org/FAIRsharing.pfg82t", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/eugenes", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MONDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://orcid.org/0000-0003-2826-6444", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Amos Bairoch" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Amos.Bairoch@sib.swiss" } }, { - "@id": "https://registry.bio2kg.org/resource/pdbligand", + "@id": "https://registry.identifiers.org/registry/sasbdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.uniprot.org/database/DB-0145", + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-8310-5195", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre-Yves LeBail" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pylebail@rennes.inra.fr" - } - }, - { - "@id": "https://orcid.org/0000-0002-6646-7274", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Don Gilbert" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "eugenes@iubio.bio.indiana.edu" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mmsinc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3640", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0180", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "http://aber-owl.net/ontology/SWO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/wicell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "@id": "https://bioregistry.io/registry/po", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WiCell Research Institute Cell Collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wicell.org" - }, - "https://bioregistry.io/schema/#0000005": "ai10e-kctd13b", - "https://bioregistry.io/schema/#0000006": "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/wicell:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/ai10e-kctd13b.cmsx?closable=true" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wicell" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/flu", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Planteome/plant-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Influenza Ontology" + "@value": "Plant Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/FLU" + "@id": "http://aber-owl.net/ontology/PO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FLU" + "@id": "http://agroportal.lirmm.fr/ontologies/PO" }, { - "@id": "https://www.obofoundry.org/ontology/flu" + "@id": "http://www.ontobee.org/ontology/PO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLU" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3ngg40" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po" + }, + { + "@id": "https://registry.bio2kg.org/resource/po" + }, + { + "@id": "https://registry.identifiers.org/registry/po" + }, + { + "@id": "https://www.obofoundry.org/ontology/po" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/po" + }, + { + "@id": "http://edamontology.org/data_1180" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "botany" + }, + { + "@value": "classification" }, { "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "plant anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://purl.obolibrary.org/obo/flu/" + "@id": "http://browser.planteome.org/amigo" }, - "https://bioregistry.io/schema/#0000005": "0000404", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FLU_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "0009089", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/flu.owl" + "@id": "http://purl.obolibrary.org/obo/po.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/genepio" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/ecocore" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9666-6285" + "@id": "https://orcid.org/0000-0002-1005-8383" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PO_0009089" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FLU_", "https://bioregistry.io/schema/#0000029": { - "@value": "flu" + "@value": "po" } }, { - "@id": "https://fairsharing.org/FAIRsharing.w7bw2y", + "@id": "http://www.ontobee.org/ontology/IDOMAL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/hgnc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/MFOEM", + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.ontobee.org/ontology/NGBO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.uniprot.org/database/DB-0026", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov", + "@id": "https://registry.identifiers.org/registry/chemspider", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/gramene.taxonomy", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.", + "@id": "http://edamontology.org/data_2773", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene Taxonomy" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY" - }, - { - "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/" - }, - "https://bioregistry.io/schema/#0000005": "013681", - "https://bioregistry.io/schema/#0000006": "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://archive.gramene.org/db/ontology/search?id=GR_tax:013681" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.taxonomy" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/dpv", + "@id": "http://www.ontobee.org/ontology/PSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.da493y", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/th", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.", + "http://purl.org/dc/terms/description": "The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Description of Plant Viruses" + "@value": "Terminologia Histologica" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/dpv" + "@value": "cytology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DPV" + "@value": "biology" }, { - "@id": "https://registry.bio2kg.org/resource/dpvweb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "classification" + "@value": "histology" }, { - "@value": "gene" + "@value": "life sciences" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.dpvweb.net/" + "@id": "https://ifaa.unifr.ch/" }, - "https://bioregistry.io/schema/#0000005": "100", - "https://bioregistry.io/schema/#0000006": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "H3.03.00.0.00007", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=100" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "dpv" + "@value": "th" } }, { - "@id": "https://bioregistry.io/registry/iedb", + "@id": "https://bioregistry.io/registry/dg.6vts", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.", + "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Immune Epitope Database" + "@value": "JCOIN" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dg.6vts" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.c886cd" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012702" - }, - { - "@id": "https://registry.bio2kg.org/resource/tied" - }, - { - "@id": "https://registry.identifiers.org/registry/iedb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "small molecule" - }, - { - "@value": "life science" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "immunology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.lji.org/" + "@id": "https://jcoin.datacommons.io" }, - "https://bioregistry.io/schema/#0000005": "1038233", - "https://bioregistry.io/schema/#0000006": "https://www.iedb.org/reference/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "2afacf00-9a1d-4d80-8c32-69d3923d3913", + "https://bioregistry.io/schema/#0000006": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.iedb.org/reference/", + "https://bioregistry.io/schema/#0000024": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.iedb.org/reference/1038233" + "@id": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/2afacf00-9a1d-4d80-8c32-69d3923d3913" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iedb" + "@value": "dg.6vts" } }, { - "@id": "https://bioregistry.io/registry/bs", + "@id": "https://registry.identifiers.org/registry/dragondb.dna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/bila", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kqt2h2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/cito", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.", + "http://purl.org/dc/terms/description": "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" + "@id": "https://github.com/sparontologies/cito" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biosapiens Protein Feature Ontology" + "@value": "Citation Typing Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.b220d4" }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "knowledge and information systems" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" - }, - "https://bioregistry.io/schema/#0000005": "00042", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/bs/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/subsets/biosapiens.obo" + "@id": "http://www.sparontologies.net/ontologies/cito" }, + "https://bioregistry.io/schema/#0000005": "sharesAuthorInstitutionWith", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/cito/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/bs/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/cito/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/bs/00042" + "@id": "http://purl.org/spar/cito/sharesAuthorInstitutionWith" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bs" + "@value": "cito" } }, { - "@id": "https://bioregistry.io/registry/rouge", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://aber-owl.net/ontology/VANDF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/senso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project.", + "http://purl.org/dc/terms/description": "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rodent Unidentified Gene-Encoded Large Proteins" + "@value": "Sensitive Data Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0092" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ROUGE" - }, - { - "@id": "https://registry.identifiers.org/registry/rouge" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vdbagq" - }, - { - "@id": "https://registry.bio2kg.org/resource/rouge" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" - }, - { - "@value": "protein" + "@id": "http://aber-owl.net/ontology/SENSO" }, { - "@value": "life science" + "@id": "https://bioportal.bioontology.org/ontologies/SENSO" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kazusa.or.jp/rouge/" + "@id": "https://github.com/DataONEorg/sem-prov-ontologies" + }, + "https://bioregistry.io/schema/#0000005": "00000003", + "https://bioregistry.io/schema/#0000006": "http://purl.dataone.org/odo/SENSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/SENSO/1/senso.owl" }, - "https://bioregistry.io/schema/#0000005": "mKIAA4200", - "https://bioregistry.io/schema/#0000006": "https://www.kazusa.or.jp/rouge/gfpage/$1", - "https://bioregistry.io/schema/#0000008": "^m\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.kazusa.or.jp/rouge/gfpage/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0381-3766" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.dataone.org/odo/SENSO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kazusa.or.jp/rouge/gfpage/mKIAA4200" + "@id": "http://purl.dataone.org/odo/SENSO_00000003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rouge" + "@value": "senso" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LPT", + "@id": "https://semanticscience.org/resource/CHEMINF_000569", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/fungidb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cst", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/jcsd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.g0a7s0", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/repeatsdb.protein", + "@id": "https://orcid.org/0000-0002-5159-414X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Edison Ong" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "edong@umich.edu" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/APO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0224", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bioschemas", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.", + "http://purl.org/dc/terms/description": "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BioSchemas/specifications" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RepeatsDB Protein" + "@value": "BioSchemas" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/repeatsdb.protein" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://repeatsdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "P29894", - "https://bioregistry.io/schema/#0000006": "https://repeatsdb.org/protein/$1", - "https://bioregistry.io/schema/#0000008": "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioschemas.org" }, + "https://bioregistry.io/schema/#0000005": "Dataset", + "https://bioregistry.io/schema/#0000006": "https://bioschemas.org/profiles/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://repeatsdb.org/protein/", + "https://bioregistry.io/schema/#0000023": { + "@value": "bioschema" + }, + "https://bioregistry.io/schema/#0000024": "https://bioschemas.org/profiles/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://repeatsdb.org/protein/P29894" + "@id": "https://bioschemas.org/profiles/Dataset" }, "https://bioregistry.io/schema/#0000029": { - "@value": "repeatsdb.protein" + "@value": "bioschemas" } }, { - "@id": "https://bioregistry.io/registry/sweetrealm", + "@id": "https://bioregistry.io/registry/togovar", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).", + "http://purl.org/dc/terms/description": "TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Semantic Web for Earth and Environment Technology Ontology" + "@value": "TogoVar" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioportal.bioontology.org/ontologies/SWEET" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/togovar" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/SWEET" - }, - "https://bioregistry.io/schema/#0000005": "ANOVA", - "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/matrMineral/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/sources/sweetrealm.obo" + "@id": "https://grch38.togovar.org/" }, + "https://bioregistry.io/schema/#0000005": "tgv139393198", + "https://bioregistry.io/schema/#0000006": "https://grch38.togovar.org/variant/$1", + "https://bioregistry.io/schema/#0000008": "^tgv[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/matrMineral/", + "https://bioregistry.io/schema/#0000024": "https://grch38.togovar.org/variant/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://sweetontology.net/matrMineral/ANOVA" + "@id": "https://grch38.togovar.org/variant/tgv139393198" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sweetrealm" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "togovar" } }, { - "@id": "https://bioregistry.io/registry/nsf.award", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research.", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Science Foundation Award" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nsf.gov/awards/about.jsp" - }, - "https://bioregistry.io/schema/#0000005": "1458400", - "https://bioregistry.io/schema/#0000006": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=1458400" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nsf.award" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5tfcy8", + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/sgd", + "@id": "https://bioregistry.io/registry/lipidbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.", + "http://purl.org/dc/terms/description": "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Saccharomyces Genome Database" + "@value": "LipidBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.wikidata.org/entity/P3406" - }, - { - "@id": "https://registry.bio2kg.org/resource/sgd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pzvw40" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd" + "@id": "https://registry.identifiers.org/registry/lipidbank" }, { - "@id": "http://edamontology.org/data_2632" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank" }, { - "@id": "https://www.re3data.org/repository/r3d100010419" + "@id": "http://edamontology.org/data_2665" }, { - "@id": "https://www.uniprot.org/database/DB-0095" + "@id": "https://registry.bio2kg.org/resource/lipidbank" }, { - "@id": "https://registry.identifiers.org/registry/sgd" + "@id": "https://fairsharing.org/FAIRsharing.bdn9br" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "nucleotide" - }, - { - "@value": "proteomics" - }, - { - "@value": "epigenetics" + "@value": "structure" }, { - "@value": "genome" + "@value": "lipid" }, { - "@value": "transcriptomics" + "@value": "molecule" }, { - "@value": "eukaryotic" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.yeastgenome.org/" + "@id": "http://lipidbank.jp/index.html" }, - "https://bioregistry.io/schema/#0000005": "S000002493", - "https://bioregistry.io/schema/#0000006": "https://www.yeastgenome.org/locus/$1", - "https://bioregistry.io/schema/#0000008": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$", + "https://bioregistry.io/schema/#0000005": "BBA0001", + "https://bioregistry.io/schema/#0000006": "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.yeastgenome.org/locus/", + "https://bioregistry.io/schema/#0000024": "http://lipidbank.jp/cgi-bin/detail.cgi?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.yeastgenome.org/locus/S000002493" + "@id": "http://lipidbank.jp/cgi-bin/detail.cgi?id=BBA0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sgd" - } - }, - { - "@id": "https://registry.identifiers.org/registry/miriam.resource", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "lipidbank" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FIX", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://www.wikidata.org/entity/P2106", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse", + "@id": "https://bioportal.bioontology.org/ontologies/HTN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://aber-owl.net/ontology/SNOMEDCT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } + "@id": "https://bioregistry.io/registry/sharkipedia", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/sharkipedia.species" + }, + { + "@id": "https://bioregistry.io/registry/sharkipedia.trend" + }, + { + "@id": "https://bioregistry.io/registry/sharkipedia.trait" + } + ] }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit", + "@id": "https://bioregistry.io/registry/scpd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database containing promotor sequences found in Saccharomyces cerevisiae.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Saccharomyces cerevisiae promoter database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/scpd" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "rna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rulai.cshl.edu/SCPD/" + }, + "https://bioregistry.io/schema/#0000005": "CDC2", + "https://bioregistry.io/schema/#0000006": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?CDC2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scpd" } }, { - "@id": "https://registry.bio2kg.org/resource/so", + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/antweb", + "@id": "https://bioregistry.io/registry/wgs84", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures.", + "http://purl.org/dc/terms/description": "A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AntWeb" + "@value": "WGS84 Geo Positioning" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.yk38tw" - }, - { - "@id": "https://registry.identifiers.org/registry/antweb" - }, - { - "@id": "https://registry.bio2kg.org/resource/antweb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb" - }, - { - "@id": "http://www.wikidata.org/entity/P5299" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "classification" - }, - { - "@value": "anatomy" - }, - { - "@value": "life science" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.antweb.org/" + "@id": "https://www.w3.org/2003/01/geo/wgs84_pos" }, - "https://bioregistry.io/schema/#0000005": "casent0106247", - "https://bioregistry.io/schema/#0000006": "http://www.antweb.org/specimen.do?name=$1", - "https://bioregistry.io/schema/#0000008": "^casent\\d+(\\-D\\d+)?$", + "https://bioregistry.io/schema/#0000005": "latitude", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/01/geo/wgs84_pos#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.antweb.org/specimen.do?name=", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/01/geo/wgs84_pos#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.antweb.org/specimen.do?name=casent0106247" + "@id": "http://www.w3.org/2003/01/geo/wgs84_pos#latitude" }, "https://bioregistry.io/schema/#0000029": { - "@value": "antweb" + "@value": "wgs84" } }, { - "@id": "https://fairsharing.org/FAIRsharing.e7e609", + "@id": "http://www.wikidata.org/entity/P4926", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://www.ontobee.org/ontology/SIBO", + "@id": "https://www.uniprot.org/database/DB-0037", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/seed.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-9316-2919", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Leszek Vincent" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Leszek@missouri.edu" } }, { - "@id": "https://www.obofoundry.org/ontology/bcgo", + "@id": "https://www.uniprot.org/database/DB-0022", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.bio2kg.org/resource/pfam", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/opmi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OPMI/opmi" - }, + "@id": "https://orcid.org/0000-0002-1810-9886", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Precision Medicine and Investigation" + "@value": "David Blackburn" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "david.c.blackburn@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/prefixcommons", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "http://www.ontobee.org/ontology/OPMI" + "@id": "https://registry.bio2kg.org/resource/panther" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPMI" + "@id": "https://registry.bio2kg.org/resource/orphanet" }, { - "@id": "https://www.obofoundry.org/ontology/opmi" + "@id": "https://registry.bio2kg.org/resource/snap" }, { - "@id": "https://fairsharing.org/FAIRsharing.d2d84f" + "@id": "https://registry.bio2kg.org/resource/pmdb" }, { - "@id": "http://aber-owl.net/ontology/OPMI" + "@id": "https://registry.bio2kg.org/resource/biomodels" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "clinical studies" + "@id": "https://registry.bio2kg.org/resource/edam" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/imgthla" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/signaling-gateway" }, { - "@value": "omics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OPMI/opmi" - }, - "https://bioregistry.io/schema/#0000005": "0000101", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OPMI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/opmi.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://registry.bio2kg.org/resource/gpcrdb" + }, { - "@id": "https://bioregistry.io/registry/labo" + "@id": "https://registry.bio2kg.org/resource/tair.locus" }, { - "@id": "https://bioregistry.io/registry/scdo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OPMI_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OPMI_0000101" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "opmi" - } - }, - { - "@id": "https://bioregistry.io/registry/arachnoserver", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ArachnoServer" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/pfam" + }, { - "@id": "https://registry.identifiers.org/registry/arachnoserver" + "@id": "https://registry.bio2kg.org/resource/amoebadb" }, { - "@id": "https://www.uniprot.org/database/DB-0145" + "@id": "https://registry.bio2kg.org/resource/pazar" }, { - "@id": "https://www.re3data.org/repository/r3d100012902" + "@id": "https://registry.bio2kg.org/resource/wbls" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER" + "@id": "https://registry.bio2kg.org/resource/doqcs.pathway" }, { - "@id": "http://edamontology.org/data_2578" + "@id": "https://registry.bio2kg.org/resource/eco" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver" + "@id": "https://registry.bio2kg.org/resource/vega" }, { - "@id": "https://registry.bio2kg.org/resource/arachnoserver" + "@id": "https://registry.bio2kg.org/resource/pseudogene" }, { - "@id": "https://fairsharing.org/FAIRsharing.c54ywe" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/cgsc" + }, { - "@value": "drug" + "@id": "https://registry.bio2kg.org/resource/genedb" }, { - "@value": "protein" + "@id": "https://registry.bio2kg.org/resource/bgee" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.arachnoserver.org/" - }, - "https://bioregistry.io/schema/#0000005": "AS000060", - "https://bioregistry.io/schema/#0000006": "http://www.arachnoserver.org/toxincard.html?id=$1", - "https://bioregistry.io/schema/#0000008": "^AS\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.arachnoserver.org/toxincard.html?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.arachnoserver.org/toxincard.html?id=AS000060" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "arachnoserver" - } - }, - { - "@id": "https://bioregistry.io/registry/mmrrc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mutant Mouse Resource and Research Centers" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/ccd" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC" + "@id": "https://registry.bio2kg.org/resource/nbrc" }, { - "@id": "https://registry.identifiers.org/registry/mmrrc" + "@id": "https://registry.bio2kg.org/resource/dbest" }, { - "@id": "https://www.re3data.org/repository/r3d100013715" + "@id": "https://registry.bio2kg.org/resource/3dmet" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc" + "@id": "https://registry.bio2kg.org/resource/redfly" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC" + "@id": "https://registry.bio2kg.org/resource/ncit" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC" + "@id": "https://registry.bio2kg.org/resource/ordb" }, { - "@id": "https://fairsharing.org/FAIRsharing.9dpd18" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/wormbase" + }, { - "@value": "embryonic stem cell line" + "@id": "https://registry.bio2kg.org/resource/ddanat" }, { - "@value": "stem cell" + "@id": "https://registry.bio2kg.org/resource/sabiork.ec" }, { - "@value": "mutant mouse strain" + "@id": "https://registry.bio2kg.org/resource/intact" }, { - "@value": "biology" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug" }, { - "@value": "transgenic" + "@id": "https://registry.bio2kg.org/resource/sitex" }, { - "@value": "cryopreserved" + "@id": "https://registry.bio2kg.org/resource/mfo" }, { - "@value": "faseb list" + "@id": "https://registry.bio2kg.org/resource/uniprot" }, { - "@value": "mouse strain" + "@id": "https://registry.bio2kg.org/resource/imotdb" }, { - "@value": "database" + "@id": "https://registry.bio2kg.org/resource/bdgp" }, { - "@value": "embryonic stem cell" + "@id": "https://registry.bio2kg.org/resource/chemspider" }, { - "@value": "mutant" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.mmrrc.org" - }, - "https://bioregistry.io/schema/#0000005": "70", - "https://bioregistry.io/schema/#0000006": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=70" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmrrc" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4877h0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c06f1e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.45a10e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/KISAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MGI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.RESIDUE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/fhir.implementation", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A set of guides on implementing various processes within hospitals or healthcare systems.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FHIR United States Implementation Guides" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://hl7.org/fhir/us/" - }, - "https://bioregistry.io/schema/#0000005": "immds", - "https://bioregistry.io/schema/#0000006": "https://hl7.org/fhir/us/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://hl7.org/fhir/us/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://hl7.org/fhir/us/immds" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fhir.implementation" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rja8qp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/dso", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/IBM/datascienceontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Data Science Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/abs" }, { - "@value": "data science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.datascienceontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "classification-model", - "https://bioregistry.io/schema/#0000006": "https://www.datascienceontology.org/concept/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8600-949X" - }, - "https://bioregistry.io/schema/#0000024": "https://www.datascienceontology.org/concept/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.datascienceontology.org/concept/classification-model" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dso" - } - }, - { - "@id": "http://aber-owl.net/ontology/DTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_357", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.a14123", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dzxae", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FLU", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/hom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/zfin", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/pepbank", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PepBank Peptide Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/pepbank" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structure" + "@id": "https://registry.bio2kg.org/resource/protclustdb" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pepbank.mgh.harvard.edu/" - }, - "https://bioregistry.io/schema/#0000005": "21877", - "https://bioregistry.io/schema/#0000006": "http://pepbank.mgh.harvard.edu/interactions/details/$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://pepbank.mgh.harvard.edu/interactions/details/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pepbank.mgh.harvard.edu/interactions/details/21877" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pepbank" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodb.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.w5ntfd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/idomal", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VEuPathDB-ontology/IDOMAL" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Malaria Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL" + "@id": "https://registry.bio2kg.org/resource/peptideatlas" }, { - "@id": "https://fairsharing.org/FAIRsharing.2q8c28" + "@id": "https://registry.bio2kg.org/resource/citexplore" }, { - "@id": "http://aber-owl.net/ontology/IDOMAL" + "@id": "https://registry.bio2kg.org/resource/fix" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal" + "@id": "https://registry.bio2kg.org/resource/hgvbase" }, { - "@id": "https://www.obofoundry.org/ontology/idomal" + "@id": "https://registry.bio2kg.org/resource/otl" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL" + "@id": "https://registry.bio2kg.org/resource/aphidbase" }, { - "@id": "http://www.ontobee.org/ontology/IDOMAL" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" + "@id": "https://registry.bio2kg.org/resource/cattleqtldb" }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/hssp" }, { - "@value": "molecular infection biology" + "@id": "https://registry.bio2kg.org/resource/kegg.pathway" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/ecogene" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vectorbase.org/ontology-browser" - }, - "https://bioregistry.io/schema/#0000005": "0002350", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IDOMAL_$1", - "https://bioregistry.io/schema/#0000008": "^(5?)\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/idomal.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1635-4810" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IDOMAL_", - "https://bioregistry.io/schema/#0000029": { - "@value": "idomal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://orcid.org/0000-0003-2787-3955", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jacqueline Campbell" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Jacqueline.Campbell@usda.gov" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j9y503", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DDPHENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/TADS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/interfil", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OMRSE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/stitch", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OGMS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8061", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000006", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has provider formatter" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ - { - "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" + "@id": "https://registry.bio2kg.org/resource/rs" }, { - "@id": "http://identifiers.org/idot/accessPattern" + "@id": "https://registry.bio2kg.org/resource/jcm" }, { - "@id": "http://www.wikidata.org/entity/P1630" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/swissregulon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SwissRegulon" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/dpvweb" + }, { - "@id": "https://registry.identifiers.org/registry/swissregulon" + "@id": "https://registry.bio2kg.org/resource/psi.mod" }, { - "@id": "https://fairsharing.org/FAIRsharing.7fnx38" + "@id": "https://registry.bio2kg.org/resource/flybase.est" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon" + "@id": "https://registry.bio2kg.org/resource/rhea" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://swissregulon.unibas.ch" - }, - "https://bioregistry.io/schema/#0000005": "AHR", - "https://bioregistry.io/schema/#0000006": "http://swissregulon.unibas.ch/query/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6338-1312" - }, - "https://bioregistry.io/schema/#0000024": "http://swissregulon.unibas.ch/query/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://swissregulon.unibas.ch/query/AHR" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "swissregulon" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pubchem.substance", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/affy.probeset", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Affymetrix Probeset" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/homologene" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset" + "@id": "https://registry.bio2kg.org/resource/ncbigene" }, { - "@id": "https://registry.identifiers.org/registry/affy.probeset" + "@id": "https://registry.bio2kg.org/resource/pt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.affymetrix.com/" - }, - "https://bioregistry.io/schema/#0000005": "243002_at", - "https://bioregistry.io/schema/#0000006": "https://www.affymetrix.com/LinkServlet?probeset=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4,}((_[asx])?_at)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.affymetrix.com/LinkServlet?probeset=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.affymetrix.com/LinkServlet?probeset=243002_at" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "affy.probeset" - } - }, - { - "@id": "https://registry.identifiers.org/registry/addgene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1693", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013413", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/yeastintron", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Intron Database v4.3" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/dbsnp" + }, { - "@id": "https://registry.identifiers.org/registry/yeastintron" + "@id": "https://registry.bio2kg.org/resource/echobase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON" + "@id": "https://registry.bio2kg.org/resource/rna_sstrand" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://intron.ucsc.edu/yeast4.3/" - }, - "https://bioregistry.io/schema/#0000005": "SNR17A", - "https://bioregistry.io/schema/#0000006": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=SNR17A" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "yeastintron" - } - }, - { - "@id": "http://aber-owl.net/ontology/CLAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/tahh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bartoc.org/en/node/18377", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/registry/civic.mpid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Molecular Profile" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.mpid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "559", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/molecular_profile/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/molecular_profile/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/molecular_profile/559" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.mpid" - } - }, - { - "@id": "https://registry.identifiers.org/registry/smart", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2mayq0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/glytoucan", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bdsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OPL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/glycomedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlycomeDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/po" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb" + "@id": "https://registry.bio2kg.org/resource/mmsinc" }, { - "@id": "https://fairsharing.org/FAIRsharing.k5k0yh" + "@id": "https://registry.bio2kg.org/resource/macie" }, { - "@id": "https://www.re3data.org/repository/r3d100011527" + "@id": "https://registry.bio2kg.org/resource/imr" }, { - "@id": "https://registry.identifiers.org/registry/glycomedb" + "@id": "https://registry.bio2kg.org/resource/vo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB" + "@id": "https://registry.bio2kg.org/resource/hcv" }, { - "@id": "https://registry.bio2kg.org/resource/glycomedb" + "@id": "https://registry.bio2kg.org/resource/evoc" }, { - "@id": "http://edamontology.org/data_2664" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/ndfrt" + }, { - "@value": "small molecules" + "@id": "https://registry.bio2kg.org/resource/interfil" }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/ydpm" }, { - "@value": "structure" + "@id": "https://registry.bio2kg.org/resource/hovergen" }, { - "@value": "molecules" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://glytoucan.org/" - }, - "https://bioregistry.io/schema/#0000005": "G77500AY", - "https://bioregistry.io/schema/#0000006": "https://glytoucan.org/Structures/Glycans/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/glytoucan" - }, - "https://bioregistry.io/schema/#0000024": "https://glytoucan.org/Structures/Glycans/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://glytoucan.org/Structures/Glycans/G77500AY" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "glycomedb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_338", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z656ab", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/fairsharing.organization", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An organization in FAIRsharing, including universities, labs, etc.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.bio2kg.org/resource/intenz" + }, { - "@id": "https://bioregistry.io/registry/fairsharing" + "@id": "https://registry.bio2kg.org/resource/iev" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIRsharing Organization" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fairsharing.org" - }, - "https://bioregistry.io/schema/#0000005": "3851", - "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/organisations/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" - }, - "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/organisations/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://fairsharing.org/organisations/3851" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fairsharing.organization" - } - }, - { - "@id": "http://aber-owl.net/ontology/EO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/OOSTT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pmr.workspace", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ricenetdb.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010222", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/resid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein covalent bond" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/merops" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid" + "@id": "https://registry.bio2kg.org/resource/pmc" }, { - "@id": "https://registry.identifiers.org/registry/resid" + "@id": "https://registry.bio2kg.org/resource/tto" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID" + "@id": "https://registry.bio2kg.org/resource/allergome" }, { - "@id": "http://edamontology.org/data_2619" + "@id": "https://registry.bio2kg.org/resource/metnetdb" }, { - "@id": "https://registry.bio2kg.org/resource/resid" + "@id": "https://registry.bio2kg.org/resource/tgma" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RESID" + "@id": "https://registry.bio2kg.org/resource/pato" }, { - "@id": "https://www.obofoundry.org/ontology/resid" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/taxonomy" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/pr" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/spike" }, { - "@value": "protein" + "@id": "https://registry.bio2kg.org/resource/prosite" }, { - "@value": "small molecule" + "@id": "https://registry.bio2kg.org/resource/chemdb" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://proteininformationresource.org/resid/" - }, - "https://bioregistry.io/schema/#0000005": "AA0001", - "https://bioregistry.io/schema/#0000006": "https://proteininformationresource.org/cgi-bin/resid?id=$1", - "https://bioregistry.io/schema/#0000008": "^AA\\d{4}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4131-735X" - }, - "https://bioregistry.io/schema/#0000024": "https://proteininformationresource.org/cgi-bin/resid?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://proteininformationresource.org/cgi-bin/resid?id=AA0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "resid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/cdno", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "None", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Southern-Cross-Plant-Science/cdno" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Compositional Dietary Nutrition Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/mycobank" + }, { - "@id": "http://aber-owl.net/ontology/CDNO" + "@id": "https://registry.bio2kg.org/resource/protonet.proteincard" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CDNO" + "@id": "https://registry.bio2kg.org/resource/flymine" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno" + "@id": "https://registry.bio2kg.org/resource/kisao" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CDNO" + "@id": "https://registry.bio2kg.org/resource/sheepqtldb" }, { - "@id": "https://www.obofoundry.org/ontology/cdno" + "@id": "https://registry.bio2kg.org/resource/virmirdb" }, { - "@id": "http://www.ontobee.org/ontology/CDNO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/world2dpage" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/cco" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cdno.info/" - }, - "https://bioregistry.io/schema/#0000005": "0000013", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CDNO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cdno.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://registry.bio2kg.org/resource/kegg.glycan" + }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://registry.bio2kg.org/resource/dbprobe" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://registry.bio2kg.org/resource/wormpep" }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://registry.bio2kg.org/resource/zfin" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://registry.bio2kg.org/resource/rnamods" }, { - "@id": "https://bioregistry.io/registry/chebi" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7696-731X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CDNO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CDNO_0000013" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cdno" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/po", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://www.wikidata.org/entity/P830", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/uniparc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/pco", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PopulationAndCommunityOntology/pco" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Population and Community Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/chebi" + }, { - "@id": "http://aber-owl.net/ontology/PCO" + "@id": "https://registry.bio2kg.org/resource/vz" }, { - "@id": "https://fairsharing.org/FAIRsharing.vq28qp" + "@id": "https://registry.bio2kg.org/resource/protcom" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PCO" + "@id": "https://registry.bio2kg.org/resource/t3db" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PCO" + "@id": "https://registry.bio2kg.org/resource/insdc" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PCO" + "@id": "https://registry.bio2kg.org/resource/omia" }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO" + "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco" + "@id": "https://registry.bio2kg.org/resource/mp" }, { - "@id": "https://www.obofoundry.org/ontology/pco" + "@id": "https://registry.bio2kg.org/resource/snp500cancer" }, { - "@id": "http://www.ontobee.org/ontology/PCO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/zfa" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/omim" }, { - "@value": "biodiversity" + "@id": "https://registry.bio2kg.org/resource/hgnc" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/vectorbase" }, { - "@value": "social and behavioural science" + "@id": "https://registry.bio2kg.org/resource/myco.lepra" }, { - "@value": "population genetics" + "@id": "https://registry.bio2kg.org/resource/stitch" }, { - "@value": "ecology" + "@id": "https://registry.bio2kg.org/resource/isfinder" }, { - "@value": "community care" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/PopulationAndCommunityOntology/pco" - }, - "https://bioregistry.io/schema/#0000005": "0000021", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PCO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pco.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://registry.bio2kg.org/resource/tigrfams" + }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://registry.bio2kg.org/resource/ehdaa" }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://registry.bio2kg.org/resource/miriam.resource" }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://registry.bio2kg.org/resource/kegg.disease" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://registry.bio2kg.org/resource/nucleardb" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://registry.bio2kg.org/resource/roleo" }, { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://registry.bio2kg.org/resource/arachnoserver" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://registry.bio2kg.org/resource/noncode" }, { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease" + }, { - "@id": "https://bioregistry.io/registry/envo" + "@id": "https://registry.bio2kg.org/resource/psi.mi" }, { - "@id": "https://bioregistry.io/registry/ecocore" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8815-0078" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PCO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PCO_0000021" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pco" - } - }, - { - "@id": "https://registry.identifiers.org/registry/tair.name", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "http://www.ontobee.org/ontology/CDAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/datanator.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/edam.topic", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.bio2kg.org/resource/pirsf" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.bio2kg.org/resource/pandit" }, { - "@id": "https://bioregistry.io/registry/edam" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/edamontology/edamontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Topic" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://edamontology.org" - }, - "https://bioregistry.io/schema/#0000005": "0003", - "https://bioregistry.io/schema/#0000006": "http://edamontology.org/topic_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" - }, - "https://bioregistry.io/schema/#0000024": "http://edamontology.org/topic_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://edamontology.org/topic_0003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "edam.topic" - } - }, - { - "@id": "https://orcid.org/0000-0001-7663-9028", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ardan Patwardhan" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "help@emdatabank.org" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0037", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.identifiers.org/registry/isni", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.compound", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.bio2kg.org/resource/fbbt" + }, { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "https://registry.bio2kg.org/resource/unists" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Compound" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/cutg" + }, { - "@id": "https://registry.bio2kg.org/resource/kegg.compound" + "@id": "https://registry.bio2kg.org/resource/biocyc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND" + "@id": "https://registry.bio2kg.org/resource/giardiadb" }, { - "@id": "http://edamontology.org/data_2605" + "@id": "https://registry.bio2kg.org/resource/eugenes" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://registry.bio2kg.org/resource/cdd" }, { - "@id": "https://registry.identifiers.org/registry/kegg.compound" + "@id": "https://registry.bio2kg.org/resource/cmd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/kegg/ligand.html" - }, - "https://bioregistry.io/schema/#0000005": "C12345", - "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^C\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://registry.bio2kg.org/resource/agsd" + }, { - "@value": "KEGG.COMPOUND" + "@id": "https://registry.bio2kg.org/resource/esldb" }, { - "@value": "KEGG COMPOUND" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kegg.jp/entry/C12345" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.compound" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MIRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/shareloc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ShareLoc" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://shareloc.xyz" - }, - "https://bioregistry.io/schema/#0000005": "000004", - "https://bioregistry.io/schema/#0000006": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/imodpasteur/ShareLoc.XYZ/ontology/shareloc.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_000004" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "shareloc" - } - }, - { - "@id": "https://orcid.org/0000-0001-5809-9523", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Darren Natale" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dan5@georgetown.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/vhog", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 \"historical homology\". Each mapping has been manually reviewed, and we provide confidence codes and references when available.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Homologous Organ Group Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/pw" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG" + "@id": "https://registry.bio2kg.org/resource/pigqtldb" }, { - "@id": "https://registry.bio2kg.org/resource/vhog" + "@id": "https://registry.bio2kg.org/resource/neurondb" }, { - "@id": "https://www.obofoundry.org/ontology/vhog" + "@id": "https://registry.bio2kg.org/resource/jcsd" }, { - "@id": "http://aber-owl.net/ontology/VHOG" + "@id": "https://registry.bio2kg.org/resource/mirbase" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VHOG" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/pathguide" + }, { - "@value": "anatomy" + "@id": "https://registry.bio2kg.org/resource/cog" }, { - "@value": "development" + "@id": "https://registry.bio2kg.org/resource/mint" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/img.taxon" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bgee.unil.ch" - }, - "https://bioregistry.io/schema/#0000005": "0000411", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VHOG_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vhog.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N7601a7cf89f14dbb930c2ae48240994c" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "VHOG_RETIRED" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VHOG_", - "https://bioregistry.io/schema/#0000029": { - "@value": "vhog" - } - }, - { - "@id": "_:N7601a7cf89f14dbb930c2ae48240994c", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bgee team" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bgee@isb-sib.ch" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z0p37e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/BCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/rdfs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RDF Schema" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/go" + }, { - "@id": "http://aber-owl.net/ontology/RDFS" + "@id": "https://registry.bio2kg.org/resource/pmap.cutdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.v9n3gk" + "@id": "https://registry.bio2kg.org/resource/goa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs" + "@id": "https://registry.bio2kg.org/resource/resid" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RDFS" + "@id": "https://registry.bio2kg.org/resource/refseq" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/biocatalogue" + }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/cgnc" }, { - "@value": "linguistics" + "@id": "https://registry.bio2kg.org/resource/arrayexpress" }, { - "@value": "bioinformatics" + "@id": "https://registry.bio2kg.org/resource/zea" }, { - "@value": "ontology and terminology" + "@id": "https://registry.bio2kg.org/resource/vhog" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/rdf-schema/" - }, - "https://bioregistry.io/schema/#0000005": "label", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2000/01/rdf-schema#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://triplydb.com/w3c/rdfs/download.trig.gz" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6450-7041" - }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2000/01/rdf-schema#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2000/01/rdf-schema#label" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rdfs" - } - }, - { - "@id": "http://aber-owl.net/ontology/GENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.submission", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ricenetdb.mirna", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RiceNetDB miRNA" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/gabi" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA" + "@id": "https://registry.bio2kg.org/resource/topdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna" + "@id": "https://registry.bio2kg.org/resource/4dn" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bis.zju.edu.cn/ricenetdb" - }, - "https://bioregistry.io/schema/#0000005": "osa-miR446", - "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^osa-miR\\d{3,5}[a-z]{0,1}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=osa-miR446" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ricenetdb.mirna" - } - }, - { - "@id": "https://registry.identifiers.org/registry/yeastintron", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/XPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/emea", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Product number for the European Medicines Agency", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Medicines Evaluation Agency" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ema.europa.eu/en/medicines" - }, - "https://bioregistry.io/schema/#0000005": "EMEA/H/C/000181", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "emea" - } - }, - { - "@id": "https://bioregistry.io/registry/pdb.ligand", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PDB ligand" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/bto" + }, { - "@id": "https://registry.identifiers.org/registry/pdb.ligand" + "@id": "https://registry.bio2kg.org/resource/ricecyc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand" + "@id": "https://registry.bio2kg.org/resource/gnd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND" + "@id": "https://registry.bio2kg.org/resource/sep" }, { - "@id": "https://registry.bio2kg.org/resource/pdbligand" + "@id": "https://registry.bio2kg.org/resource/cas" }, { - "@id": "http://www.wikidata.org/entity/P3636" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/eggnog" + }, { - "@value": "protein" + "@id": "https://registry.bio2kg.org/resource/come" }, { - "@value": "interaction" + "@id": "https://registry.bio2kg.org/resource/4dxpress" }, { - "@value": "small molecule" + "@id": "https://registry.bio2kg.org/resource/ensembl.plant" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "TRQ", - "https://bioregistry.io/schema/#0000006": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "PDB_CHEM_ID" - }, - "https://bioregistry.io/schema/#0000024": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=TRQ" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pdb.ligand" - } - }, - { - "@id": "http://www.wikidata.org/entity/P354", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/matrixdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7fnx38", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/transportdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TransportDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/transportdb" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.membranetransport.org" - }, - "https://bioregistry.io/schema/#0000005": "MMP0523", - "https://bioregistry.io/schema/#0000006": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=MMP0523" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "transportdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LRG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/gabi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Network of Different Plant Genomic Research Projects" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/dbd" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GABI" + "@id": "https://registry.bio2kg.org/resource/innatedb" }, { - "@id": "https://registry.bio2kg.org/resource/gabi" + "@id": "https://registry.bio2kg.org/resource/splicenest" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi" + "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI" + "@id": "https://registry.bio2kg.org/resource/hamap" }, { - "@id": "https://registry.identifiers.org/registry/gabi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/yeastract" + }, { - "@value": "genome" + "@id": "https://registry.bio2kg.org/resource/grsdb" }, { - "@value": "gene" + "@id": "https://registry.bio2kg.org/resource/imgt.primerdb" }, { - "@value": "plant" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gabipd.org/" - }, - "https://bioregistry.io/schema/#0000005": "2679240", - "https://bioregistry.io/schema/#0000006": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gabi:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=2679240&Mode=ShowBioObject" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gabi" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "http://aber-owl.net/ontology/CDAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/dron", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ufbmi/dron" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Drug Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/pto" + }, { - "@id": "http://aber-owl.net/ontology/DRON" + "@id": "https://registry.bio2kg.org/resource/phylomedb" }, { - "@id": "https://www.obofoundry.org/ontology/dron" + "@id": "https://registry.bio2kg.org/resource/ensembl" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron" + "@id": "https://registry.bio2kg.org/resource/alfred" }, { - "@id": "http://www.ontobee.org/ontology/DRON" + "@id": "https://registry.bio2kg.org/resource/bioportal" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRON" + "@id": "https://registry.bio2kg.org/resource/sprint" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DRON" + "@id": "https://registry.bio2kg.org/resource/emap.ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.w5ntfd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/pubchem.compound" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/asrp" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/sao" }, { - "@value": "biomedical science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ufbmi/dron" - }, - "https://bioregistry.io/schema/#0000005": "00023232", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DRON_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/dron.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9881-1017" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DRON_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DRON_00023232" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dron" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g7b4rj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_323", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/insdc.cds", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/glycoepitope", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlycoEpitope" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/kegg.brite" + }, { - "@id": "https://registry.identifiers.org/registry/glycoepitope" + "@id": "https://registry.bio2kg.org/resource/pepbank" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope" + "@id": "https://registry.bio2kg.org/resource/s_mart_db" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOEPITOPE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.glycoepitope.jp/epitopes/" - }, - "https://bioregistry.io/schema/#0000005": "EP0311", - "https://bioregistry.io/schema/#0000006": "https://www.glycoepitope.jp/epitopes/$1", - "https://bioregistry.io/schema/#0000008": "^EP\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.glycoepitope.jp/epitopes/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.glycoepitope.jp/epitopes/EP0311" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "glycoepitope" - } - }, - { - "@id": "https://bioregistry.io/registry/unimod", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unimod protein modification database for mass spectrometry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/ehda" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod" + "@id": "https://registry.bio2kg.org/resource/gold" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD" + "@id": "https://registry.bio2kg.org/resource/clinicaltrials" }, { - "@id": "https://registry.identifiers.org/registry/unimod" + "@id": "https://registry.bio2kg.org/resource/virgen" }, { - "@id": "http://edamontology.org/data_3757" + "@id": "https://registry.bio2kg.org/resource/homd.taxon" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod" + "@id": "https://registry.bio2kg.org/resource/irefweb" }, { - "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/bold" + }, { - "@value": "bioinformatics" + "@id": "https://registry.bio2kg.org/resource/orthodb" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.unimod.org/" - }, - "https://bioregistry.io/schema/#0000005": "1200", - "https://bioregistry.io/schema/#0000006": "http://www.unimod.org/modifications_view.php?editid1=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/unimod.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.unimod.org/modifications_view.php?editid1=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.unimod.org/modifications_view.php?editid1=1200" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "unimod" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7C0aVE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.wikidata.org/entity/P846", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/abs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/antibodyregistry", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Antibody Registry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/nmpdr" + }, { - "@id": "https://registry.identifiers.org/registry/antibodyregistry" + "@id": "https://registry.bio2kg.org/resource/swo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry" + "@id": "https://registry.bio2kg.org/resource/spbase" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB" + "@id": "https://registry.bio2kg.org/resource/kegg.orthology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTIBODYREGISTRY" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/superfamily" + }, { - "@value": "unique identifiers" + "@id": "https://registry.bio2kg.org/resource/ncbi.protein" }, { - "@value": "reagent" + "@id": "https://registry.bio2kg.org/resource/fbdv" }, { - "@value": "antibody" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://antibodyregistry.org/" - }, - "https://bioregistry.io/schema/#0000005": "493771", - "https://bioregistry.io/schema/#0000006": "http://antibodyregistry.org/AB_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://antibodyregistry.org/AB_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://antibodyregistry.org/AB_493771" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "antibodyregistry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dq78pn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/fossilworks", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://registry.bio2kg.org/resource/sabiork.reaction" + }, { - "@id": "https://bioregistry.io/registry/fossilworks.journal" + "@id": "https://registry.bio2kg.org/resource/smpdb" }, { - "@id": "https://bioregistry.io/registry/fossilworks.taxon" - } - ] - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.identifiers.org/registry/p3db.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://edamontology.org/data_1141", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GAZ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/dinto", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A formal represention for drug-drug interactions knowledge.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/labda/DINTO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Drug-Drug Interactions Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/ena" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DINTO" + "@id": "https://registry.bio2kg.org/resource/geo" }, { - "@id": "http://www.ontobee.org/ontology/DINTO" + "@id": "https://registry.bio2kg.org/resource/planttfdb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DINTO" + "@id": "https://registry.bio2kg.org/resource/mipmod" }, { - "@id": "https://www.obofoundry.org/ontology/dinto" + "@id": "https://registry.bio2kg.org/resource/scpd" }, { - "@id": "http://aber-owl.net/ontology/DINTO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/rnao" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://labda.inf.uc3m.es/doku.php?id=es:labda_dinto" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DINTO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/dinto.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb2f2dacd286c4088869c5474d4d79310" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DINTO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "dinto" - } - }, - { - "@id": "_:Nb2f2dacd286c4088869c5474d4d79310", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maria Herrero" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "maria.herrero@kcl.ac.uk" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3t5qc3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/ctcae", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Terminology Criteria for Adverse Events" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/iuphar.family" + }, { - "@id": "http://aber-owl.net/ontology/CTCAE" + "@id": "https://registry.bio2kg.org/resource/ro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTCAE" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://evs.nci.nih.gov/ftp1/CTCAE/About.html" - }, - "https://bioregistry.io/schema/#0000005": "E12768", - "https://bioregistry.io/schema/#0000008": "^E\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/CTCAE/2/ctcae.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/oae" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N990a89615e4241f58815382f39a098e3" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "CTCAE" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ctcae" - } - }, - { - "@id": "_:N990a89615e4241f58815382f39a098e3", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CTCAE Help" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ncictcaehelp@mail.nih.gov" - } - }, - { - "@id": "https://bioregistry.io/registry/ypo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Phenotype Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/swissmodel" + }, { - "@id": "https://www.obofoundry.org/ontology/ypo" + "@id": "https://registry.bio2kg.org/resource/genbank" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YPO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/wikipathways" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/glycomedb" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.yeastgenome.org/" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/YPO_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9163-5180" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/YPO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "ypo" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OHMI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/pesticideinfo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "chemical in the database supplied by Pesticide Action Network North America", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PesticideInfo chemical ID" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P11949" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.pesticideinfo.org" - }, - "https://bioregistry.io/schema/#0000005": "PRI10", - "https://bioregistry.io/schema/#0000006": "https://www.pesticideinfo.org/chemical/$1", - "https://bioregistry.io/schema/#0000008": "^PRI\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.pesticideinfo.org/chemical/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.pesticideinfo.org/chemical/PRI10" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pesticideinfo" - } - }, - { - "@id": "https://bioregistry.io/registry/sider.drug", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SIDER Drug" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/niaest" + }, { - "@id": "https://registry.identifiers.org/registry/sider.drug" + "@id": "https://registry.bio2kg.org/resource/kegg.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG" + "@id": "https://registry.bio2kg.org/resource/doi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sideeffects.embl.de/" - }, - "https://bioregistry.io/schema/#0000005": "2244", - "https://bioregistry.io/schema/#0000006": "http://sideeffects.embl.de/drugs/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sideeffects.embl.de/drugs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://sideeffects.embl.de/drugs/2244" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sider.drug" - } - }, - { - "@id": "https://bioregistry.io/registry/txpo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/txpo-ontology/TXPO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Toxic Process Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/chickenqtldb" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/TXPO" + "@id": "https://registry.bio2kg.org/resource/geneannot" }, { - "@id": "https://www.obofoundry.org/ontology/txpo" + "@id": "https://registry.bio2kg.org/resource/gendis" }, { - "@id": "http://aber-owl.net/ontology/TXPO" + "@id": "https://registry.bio2kg.org/resource/rnajunction" }, { - "@id": "http://www.ontobee.org/ontology/TXPO" + "@id": "https://registry.bio2kg.org/resource/jcvi.genprop" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/atc" + }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/sdap" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://toxpilot.nibiohn.go.jp/" - }, - "https://bioregistry.io/schema/#0000005": "0002066", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TXPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/txpo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9673-1283" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TXPO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/TXPO_0002066" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "txpo" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/omid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/paleodb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Paleobiology Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/sbo" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb" + "@id": "https://registry.bio2kg.org/resource/hpa" }, { - "@id": "https://registry.identifiers.org/registry/paleodb" + "@id": "https://registry.bio2kg.org/resource/alzgene" }, { "@id": "https://registry.bio2kg.org/resource/paleodb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "taxonomy" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://paleodb.org/" - }, - "https://bioregistry.io/schema/#0000005": "83088", - "https://bioregistry.io/schema/#0000006": "http://fossilworks.org/?a=taxonInfo&taxon_no=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://fossilworks.org/?a=taxonInfo&taxon_no=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://fossilworks.org/?a=taxonInfo&taxon_no=83088" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "paleodb" - } - }, - { - "@id": "https://orcid.org/0000-0003-1705-3515", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Andreas Ruepp" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "andreas.ruepp@helmholtz-muenchen.de" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zchb68", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/agsd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome Size Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/tuberculist" + }, { - "@id": "https://fairsharing.org/FAIRsharing.efp5v2" + "@id": "https://registry.bio2kg.org/resource/soy" }, { - "@id": "https://www.re3data.org/repository/r3d100012517" + "@id": "https://registry.bio2kg.org/resource/mampol" }, { - "@id": "https://registry.bio2kg.org/resource/agsd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/chembank" + }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/flybase" }, { - "@value": "dna" + "@id": "https://registry.bio2kg.org/resource/pharmvar" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genomesize.com" - }, - "https://bioregistry.io/schema/#0000005": "4779", - "https://bioregistry.io/schema/#0000006": "http://www.genomesize.com/result_species.php?id=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.genomesize.com/result_species.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.genomesize.com/result_species.php?id=4779" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "agsd" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/lbo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary for cattle, chicken, horse, pig, and sheep breeds.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/AnimalGenome/livestock-breed-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Livestock Breed Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/norine" + }, { - "@id": "http://aber-owl.net/ontology/LBO" + "@id": "https://registry.bio2kg.org/resource/gendr" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/LBO" + "@id": "https://registry.bio2kg.org/resource/viperdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo" + "@id": "https://registry.bio2kg.org/resource/obi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LBO" + "@id": "https://registry.bio2kg.org/resource/bionumbers" }, { - "@id": "https://fairsharing.org/FAIRsharing.309v57" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/neurolex" + }, { - "@value": "genomics" + "@id": "https://registry.bio2kg.org/resource/interpro" }, { - "@value": "animal husbandry" + "@id": "https://registry.bio2kg.org/resource/ird.segment" }, { - "@value": "animal breeding" + "@id": "https://registry.bio2kg.org/resource/bactibase" }, { - "@value": "genetics" + "@id": "https://registry.bio2kg.org/resource/huge" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioportal.bioontology.org/ontologies/LBO" - }, - "https://bioregistry.io/schema/#0000005": "0000487", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/AnimalGenome/livestock-breed-ontology/raw/master/current_release/lbo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2346-5201" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LBO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/LBO_0000487" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lbo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PCL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1402", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/opm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-9900-7880", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yvonne Bradford" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ybradford@zfin.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/wikipedia.en", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-7140-9933", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Thomas Lütteke" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "thomas@luetteke-online.de" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012901", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/vectorbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/emap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse gross anatomy and development, timed" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/mao" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap" + "@id": "https://registry.bio2kg.org/resource/tccd" }, { - "@id": "https://www.obofoundry.org/ontology/emap" + "@id": "https://registry.bio2kg.org/resource/genecards" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EMAP" + "@id": "https://registry.bio2kg.org/resource/iresite" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP" + "@id": "https://registry.bio2kg.org/resource/nextdb" }, { - "@id": "https://registry.bio2kg.org/resource/emap.ontology" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/corum" + }, { - "@value": "development" + "@id": "https://registry.bio2kg.org/resource/uniprot.kw" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/pathwaycommons" }, { - "@value": "ontology" + "@id": "https://registry.bio2kg.org/resource/fao" }, { - "@value": "mouse" + "@id": "https://registry.bio2kg.org/resource/opb" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://emouseatlas.org" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EMAP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/emap.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0956-8634" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EMAP_", - "https://bioregistry.io/schema/#0000029": { - "@value": "emap" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mlc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ZP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/clyh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CLO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/metacyc.compound", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolic Encyclopedia of metabolic and other pathways" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/clo" + }, { - "@id": "https://www.re3data.org/repository/r3d100011294" + "@id": "https://registry.bio2kg.org/resource/aceview.worm" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound" + "@id": "https://registry.bio2kg.org/resource/dictybase" }, { - "@id": "https://fairsharing.org/FAIRsharing.yytevr" + "@id": "https://registry.bio2kg.org/resource/symptom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.COMPOUND" + "@id": "https://registry.bio2kg.org/resource/kegg.compound" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc" + "@id": "https://registry.bio2kg.org/resource/hdr" }, { - "@id": "https://registry.identifiers.org/registry/metacyc.compound" + "@id": "https://registry.bio2kg.org/resource/sgn" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/kegg.metagenome" + }, { - "@value": "metabolomics" + "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay" }, { - "@value": "systems biology" + "@id": "https://registry.bio2kg.org/resource/cazy" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metacyc.org" - }, - "https://bioregistry.io/schema/#0000005": "CPD-10330", - "https://bioregistry.io/schema/#0000006": "https://metacyc.org/compound?orgid=META&id=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+_.%-:]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MetaCyc" - }, - "https://bioregistry.io/schema/#0000024": "https://metacyc.org/compound?orgid=META&id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://metacyc.org/compound?orgid=META&id=CPD-10330" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "metacyc.compound" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c54ywe", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/OMRSE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OHD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0031", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/wbphenotype", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology about C. elegans and other nematode phenotypes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/c-elegans-phenotype-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "C. elegans phenotype" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/uniparc" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype" + "@id": "https://registry.bio2kg.org/resource/teddy" }, { - "@id": "https://www.obofoundry.org/ontology/wbphenotype" + "@id": "https://registry.bio2kg.org/resource/vita" }, { - "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE" + "@id": "https://registry.bio2kg.org/resource/pmp" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype" + "@id": "https://registry.bio2kg.org/resource/dailymed" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBPhenotype" + "@id": "https://registry.bio2kg.org/resource/taxrank" }, { - "@id": "http://aber-owl.net/ontology/WBPHENOTYPE" + "@id": "https://registry.bio2kg.org/resource/unipathway" }, { - "@id": "https://fairsharing.org/FAIRsharing.agvc7y" + "@id": "https://registry.bio2kg.org/resource/xenbase" }, { - "@id": "http://www.ontobee.org/ontology/WBPhenotype" + "@id": "https://registry.bio2kg.org/resource/glycomapsdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/rvd" + }, + { + "@id": "https://registry.bio2kg.org/resource/snomedct" + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbj" + }, + { + "@id": "https://registry.bio2kg.org/resource/pubchem.substance" + }, + { + "@id": "https://registry.bio2kg.org/resource/rouge" + }, + { + "@id": "https://registry.bio2kg.org/resource/mimodb" + }, + { + "@id": "https://registry.bio2kg.org/resource/csa" + }, + { + "@id": "https://registry.bio2kg.org/resource/nembase" + }, + { + "@id": "https://registry.bio2kg.org/resource/myco.smeg" + }, + { + "@id": "https://registry.bio2kg.org/resource/grin" + }, + { + "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage" + }, + { + "@id": "https://registry.bio2kg.org/resource/hpmr" + }, + { + "@id": "https://registry.bio2kg.org/resource/peroxibase" + }, + { + "@id": "https://registry.bio2kg.org/resource/jws" + }, + { + "@id": "https://registry.bio2kg.org/resource/treefam" + }, + { + "@id": "https://registry.bio2kg.org/resource/genefarm" + }, + { + "@id": "https://registry.bio2kg.org/resource/aaindex" + }, + { + "@id": "https://registry.bio2kg.org/resource/unite" + }, + { + "@id": "https://registry.bio2kg.org/resource/pubmed" + }, + { + "@id": "https://registry.bio2kg.org/resource/chemidplus" }, { "@id": "https://registry.bio2kg.org/resource/wbphenotype" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + }, { - "@value": "anatomy" + "@id": "https://registry.bio2kg.org/resource/tair.protein" }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/dip" }, { - "@value": "phenotype" + "@id": "https://registry.bio2kg.org/resource/fma" }, { - "@value": "worm" + "@id": "https://registry.bio2kg.org/resource/pass2" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/biosystems" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/c-elegans-phenotype-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000983", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBPhenotype_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/wbphenotype.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9076-6015" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "WBPhenotype" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBPhenotype_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/WBPhenotype_0000983" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wbphenotype" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j1wj7d", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mjnypw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://aber-owl.net/ontology/skos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/niaest", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIA Mouse cDNA Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/icd" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest" + "@id": "https://registry.bio2kg.org/resource/ivdb" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST" + "@id": "https://registry.bio2kg.org/resource/bykdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.xwqg9h" + "@id": "https://registry.bio2kg.org/resource/pride" }, { - "@id": "https://registry.identifiers.org/registry/niaest" + "@id": "https://registry.bio2kg.org/resource/cgd" }, { - "@id": "https://registry.bio2kg.org/resource/niaest" + "@id": "https://registry.bio2kg.org/resource/bindingdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/neuromorpho" + }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/ligandexpo" }, { - "@value": "dna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lgsun.grc.nia.nih.gov/cDNA/" - }, - "https://bioregistry.io/schema/#0000005": "J0705A10", - "https://bioregistry.io/schema/#0000006": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1", - "https://bioregistry.io/schema/#0000008": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4054-1827" - }, - "https://bioregistry.io/schema/#0000024": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=J0705A10" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "niaest" - } - }, - { - "@id": "http://aber-owl.net/ontology/FOODON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.swbypy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/XLMOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fbbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBPhenotype", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/ONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ncim", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCI Metathesaurus" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM" + "@id": "https://registry.bio2kg.org/resource/astd" }, { - "@id": "https://registry.identifiers.org/registry/ncim" + "@id": "https://registry.bio2kg.org/resource/propreo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ncim.nci.nih.gov/" - }, - "https://bioregistry.io/schema/#0000005": "C0026339", - "https://bioregistry.io/schema/#0000006": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1", - "https://bioregistry.io/schema/#0000008": "^C\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/040gcmg81" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0026339" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ncim" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/bila", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pqzyd5", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/NBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/elm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/gpcrdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0003-1355-892X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Richard Scheuermann" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rscheuermann@jcvi.org" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ncbigene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/go.gpi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Product Information Schema" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" - }, - "https://bioregistry.io/schema/#0000005": "db-object-id", - "https://bioregistry.io/schema/#0000006": "http://geneontology.org/docs/gene-product-information-gpi-format/#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://geneontology.org/docs/gene-product-information-gpi-format/#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://geneontology.org/docs/gene-product-information-gpi-format/#db-object-id" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "go.gpi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2abjs5", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/ito", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenBioLink/ITO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Intelligence Task Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/drugbank" + }, { - "@id": "https://fairsharing.org/FAIRsharing.89e853" + "@id": "https://registry.bio2kg.org/resource/ccds" }, { - "@id": "https://registry.identifiers.org/registry/ito" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ITO" + "@id": "https://registry.bio2kg.org/resource/biogrid" }, { - "@id": "http://aber-owl.net/ontology/ITO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/tied" + }, { - "@value": "artificial intelligence" + "@id": "https://registry.bio2kg.org/resource/disprot" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://openbiolink.github.io/ITOExplorer/" - }, - "https://bioregistry.io/schema/#0000005": "01625", - "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ITO/17/ito.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4855-2571" - }, - "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_01625" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ito" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/drugbank.category", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Close to 5K Categorizations for drugs, similar to ATCC.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.bio2kg.org/resource/myco.marinum" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.bio2kg.org/resource/lipidmaps" }, { - "@id": "https://bioregistry.io/registry/drugbank" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Drug Category" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/doqcs.model" + }, { - "@value": "chemistry" + "@id": "https://registry.bio2kg.org/resource/antweb" }, { - "@value": "metascience" + "@id": "https://registry.bio2kg.org/resource/genenote" }, { - "@value": "topics" + "@id": "https://registry.bio2kg.org/resource/greengenes" }, { - "@value": "drugs" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://go.drugbank.com/categories" - }, - "https://bioregistry.io/schema/#0000005": "DBCAT000600", - "https://bioregistry.io/schema/#0000006": "https://www.drugbank.ca/categories/$1", - "https://bioregistry.io/schema/#0000008": "^DBCAT\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.drugbank.ca/categories/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.drugbank.ca/categories/DBCAT000600" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.category" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-7542-0286", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Egon Willighagen" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://registry.bio2kg.org/resource/vao" + }, { - "@value": "egon.willighagen@gmail.com" + "@id": "https://registry.bio2kg.org/resource/brenda" }, { - "@value": "egon.willighagen@maastrichtuniversity.nl" - } - ] - }, - { - "@id": "https://registry.identifiers.org/registry/medlineplus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9kahy4", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/stn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The pre-IND tracking number for submissions to the FDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FDA Submission Tracking Number" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.fda.gov/media/128698/download" - }, - "https://bioregistry.io/schema/#0000005": "125768", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "stn" - } - }, - { - "@id": "https://bioregistry.io/registry/ecmdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "E. coli Metabolite Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ecmdb.ca" - }, - "https://bioregistry.io/schema/#0000005": "ECMDB00005", - "https://bioregistry.io/schema/#0000006": "http://ecmdb.ca/compounds/$1", - "https://bioregistry.io/schema/#0000008": "^ECMDB\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ECMDB" - }, - "https://bioregistry.io/schema/#0000024": "http://ecmdb.ca/compounds/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ecmdb.ca/compounds/ECMDB00005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecmdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/hms.lincs.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HMS LINCS Cell" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lincs.hms.harvard.edu/db/cell/" - }, - "https://bioregistry.io/schema/#0000005": "50583", - "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/cells/$1", - "https://bioregistry.io/schema/#0000008": "^5\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/cells/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://lincs.hms.harvard.edu/db/cells/50583" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hms.lincs.cell" - } - }, - { - "@id": "https://bioregistry.io/registry/rxno", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rsc-ontologies/rxno" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Name Reaction Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/door" + }, { - "@id": "https://fairsharing.org/FAIRsharing.w4tncg" + "@id": "https://registry.bio2kg.org/resource/mirbase.mature" }, { - "@id": "http://www.wikidata.org/entity/P2106" + "@id": "https://registry.bio2kg.org/resource/biopixie" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO" + "@id": "https://registry.bio2kg.org/resource/pid" }, { - "@id": "https://www.obofoundry.org/ontology/rxno" + "@id": "https://registry.bio2kg.org/resource/rebase" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RXNO" + "@id": "https://registry.bio2kg.org/resource/worfdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno" + "@id": "https://registry.bio2kg.org/resource/tair.gene" }, { - "@id": "http://www.ontobee.org/ontology/RXNO" + "@id": "https://registry.bio2kg.org/resource/loqate" }, { - "@id": "http://aber-owl.net/ontology/RXNO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/ygob" + }, { - "@value": "molecular chemistry" + "@id": "https://registry.bio2kg.org/resource/trnadbce" }, { - "@value": "obo" + "@id": "https://registry.bio2kg.org/resource/kegg.drug" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/rsc-ontologies/rxno" - }, - "https://bioregistry.io/schema/#0000005": "0000253", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RXNO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/rxno.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5985-7429" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RXNO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/RXNO_0000253" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rxno" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3kcgmr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0001-7815-151X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Annika Jahnke-Bornemann" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "annika.jahnke-bornemann@uni-hamburg.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hkk309", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010626", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGGNOG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/igrhcellid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Genomic Resources of human Cell Lines for Identification" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/index.cgi" - }, - "https://bioregistry.io/schema/#0000005": "ACHN", - "https://bioregistry.io/schema/#0000006": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=ACHN" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "igrhcellid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/dbsnp", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ncbi/dbsnp/tree/master/tutorials" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "dbSNP Reference SNP number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.bio2kg.org/resource/rex" + }, { - "@id": "https://registry.identifiers.org/registry/dbsnp" + "@id": "https://registry.bio2kg.org/resource/gramene.po" }, { - "@id": "https://registry.bio2kg.org/resource/dbsnp" + "@id": "https://registry.bio2kg.org/resource/mmmp" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP" + "@id": "https://registry.bio2kg.org/resource/beetlebase" }, { - "@id": "https://fairsharing.org/FAIRsharing.edxb58" + "@id": "https://registry.bio2kg.org/resource/string" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp" + "@id": "https://registry.bio2kg.org/resource/maizegdb" }, { - "@id": "http://edamontology.org/data_1106" + "@id": "https://registry.bio2kg.org/resource/pathoplant" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP" + "@id": "https://registry.bio2kg.org/resource/img.gene" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284" + "@id": "https://registry.bio2kg.org/resource/microsporidia" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP" + "@id": "https://registry.bio2kg.org/resource/rapdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dbSNP" + "@id": "https://registry.bio2kg.org/resource/cst" }, { - "@id": "https://www.uniprot.org/database/DB-0013" + "@id": "https://registry.bio2kg.org/resource/hogenom" }, { - "@id": "https://www.re3data.org/repository/r3d100010652" + "@id": "https://registry.bio2kg.org/resource/kegg.genome" }, { - "@id": "http://www.wikidata.org/entity/P6861" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.bio2kg.org/resource/archdb" + }, { - "@value": "life science" + "@id": "https://registry.bio2kg.org/resource/homd.seq" }, { - "@value": "genome" + "@id": "https://registry.bio2kg.org/resource/molmovdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/reactome" + }, + { + "@id": "https://registry.bio2kg.org/resource/tred" + }, + { + "@id": "https://registry.bio2kg.org/resource/tgd" + }, + { + "@id": "https://registry.bio2kg.org/resource/cryptodb" + }, + { + "@id": "https://registry.bio2kg.org/resource/xco" + }, + { + "@id": "https://registry.bio2kg.org/resource/plasmodb" + }, + { + "@id": "https://registry.bio2kg.org/resource/virushostdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/isbn" + }, + { + "@id": "https://registry.bio2kg.org/resource/lgicdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/mpath" + }, + { + "@id": "https://registry.bio2kg.org/resource/viroligo" + }, + { + "@id": "https://registry.bio2kg.org/resource/rgd" + }, + { + "@id": "https://registry.bio2kg.org/resource/geneloc" + }, + { + "@id": "https://registry.bio2kg.org/resource/vbrc" + }, + { + "@id": "https://registry.bio2kg.org/resource/cellimage" + }, + { + "@id": "https://registry.bio2kg.org/resource/asap" + }, + { + "@id": "https://registry.bio2kg.org/resource/icdo" + }, + { + "@id": "https://registry.bio2kg.org/resource/sstoss" + }, + { + "@id": "https://registry.bio2kg.org/resource/spdo" + }, + { + "@id": "https://registry.bio2kg.org/resource/pombase" + }, + { + "@id": "https://registry.bio2kg.org/resource/nmr" + }, + { + "@id": "https://registry.bio2kg.org/resource/yrc" + }, + { + "@id": "https://registry.bio2kg.org/resource/napp" + }, + { + "@id": "https://registry.bio2kg.org/resource/scop" + }, + { + "@id": "https://registry.bio2kg.org/resource/unigene" + }, + { + "@id": "https://registry.bio2kg.org/resource/apd" + }, + { + "@id": "https://registry.bio2kg.org/resource/mesh" + }, + { + "@id": "https://registry.bio2kg.org/resource/datf" + }, + { + "@id": "https://registry.bio2kg.org/resource/hbvar" + }, + { + "@id": "https://registry.bio2kg.org/resource/imex" + }, + { + "@id": "https://registry.bio2kg.org/resource/sgd" + }, + { + "@id": "https://registry.bio2kg.org/resource/arxiv" + }, + { + "@id": "https://registry.bio2kg.org/resource/biomagresbank" + }, + { + "@id": "https://registry.bio2kg.org/resource/pmap.substratedb" + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbsum" + }, + { + "@id": "https://registry.bio2kg.org/resource/ised" + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.protist" + }, + { + "@id": "https://registry.bio2kg.org/resource/shibase" + }, + { + "@id": "https://registry.bio2kg.org/resource/hmdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/do" + }, + { + "@id": "https://registry.bio2kg.org/resource/imgt.ligm" + }, + { + "@id": "https://registry.bio2kg.org/resource/smart" + }, + { + "@id": "https://registry.bio2kg.org/resource/subtilist" + }, + { + "@id": "https://registry.bio2kg.org/resource/subtiwiki" + }, + { + "@id": "https://registry.bio2kg.org/resource/genage" + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.fungi" + }, + { + "@id": "https://registry.bio2kg.org/resource/cath" + }, + { + "@id": "https://registry.bio2kg.org/resource/eropmoscow" + }, + { + "@id": "https://registry.bio2kg.org/resource/chembl" + }, + { + "@id": "https://registry.bio2kg.org/resource/modeldb" + }, + { + "@id": "https://registry.bio2kg.org/resource/lipidbank" + }, + { + "@id": "https://registry.bio2kg.org/resource/mpi" + }, + { + "@id": "https://registry.bio2kg.org/resource/prodom" + }, + { + "@id": "https://registry.bio2kg.org/resource/uo" + }, + { + "@id": "https://registry.bio2kg.org/resource/wikipedia" + }, + { + "@id": "https://registry.bio2kg.org/resource/mirnest" + }, + { + "@id": "https://registry.bio2kg.org/resource/eo" + }, + { + "@id": "https://registry.bio2kg.org/resource/treebase" + }, + { + "@id": "https://registry.bio2kg.org/resource/wbbt" + }, + { + "@id": "https://registry.bio2kg.org/resource/transportdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/hprd" + }, + { + "@id": "https://registry.bio2kg.org/resource/tcdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/fbbi" + }, + { + "@id": "https://registry.bio2kg.org/resource/fbcv" + }, + { + "@id": "https://registry.bio2kg.org/resource/so" + }, + { + "@id": "https://registry.bio2kg.org/resource/bind" + }, + { + "@id": "https://registry.bio2kg.org/resource/mmdb" + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbligand" + }, + { + "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways" + }, + { + "@id": "https://registry.bio2kg.org/resource/ipi" + }, + { + "@id": "https://registry.bio2kg.org/resource/snornalbmedb" + }, + { + "@id": "https://registry.bio2kg.org/resource/sgd.pathways" + }, + { + "@id": "https://registry.bio2kg.org/resource/cl" + }, + { + "@id": "https://registry.bio2kg.org/resource/kegg.gene" + }, + { + "@id": "https://registry.bio2kg.org/resource/genetree" + }, + { + "@id": "https://registry.bio2kg.org/resource/pibase" + }, + { + "@id": "https://registry.bio2kg.org/resource/genatlas" + }, + { + "@id": "https://registry.bio2kg.org/resource/addgene" + }, + { + "@id": "https://registry.bio2kg.org/resource/aclame" + }, + { + "@id": "https://registry.bio2kg.org/resource/vbase2" + }, + { + "@id": "https://registry.bio2kg.org/resource/rgap" + }, + { + "@id": "https://registry.bio2kg.org/resource/fsnp" + }, + { + "@id": "https://registry.bio2kg.org/resource/mgi" + }, + { + "@id": "https://registry.bio2kg.org/resource/mtbd" + }, + { + "@id": "https://registry.bio2kg.org/resource/vt" + }, + { + "@id": "https://registry.bio2kg.org/resource/aao" + }, + { + "@id": "https://registry.bio2kg.org/resource/vso" + }, + { + "@id": "https://registry.bio2kg.org/resource/p3db" + }, + { + "@id": "https://registry.bio2kg.org/resource/protonet.cluster" + }, + { + "@id": "https://registry.bio2kg.org/resource/ma" + }, + { + "@id": "https://registry.bio2kg.org/resource/nasc" + }, + { + "@id": "https://registry.bio2kg.org/resource/tao" + }, + { + "@id": "https://registry.bio2kg.org/resource/ratmap" + }, + { + "@id": "https://registry.bio2kg.org/resource/mgiid" + }, + { + "@id": "https://registry.bio2kg.org/resource/matrixdb" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Prefix Commons" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/snp/" + "@value": "https://registry.bio2kg.org" }, - "https://bioregistry.io/schema/#0000005": "rs121909098", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/snp/$1", - "https://bioregistry.io/schema/#0000008": "^rs\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/snp/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/snp/rs121909098" + "https://bioregistry.io/schema/#0000005": { + "@value": "doi" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbsnp" - } - }, - { - "@id": "https://orcid.org/0000-0001-9076-6015", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chris Grove" + "https://bioregistry.io/schema/#0000006": { + "@value": "https://registry.bio2kg.org/resource/$1" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cgrove@caltech.edu" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4727-9435" } }, { - "@id": "http://aber-owl.net/ontology/CHEMINF", + "@id": "https://registry.bio2kg.org/resource/alzgene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/umbbd.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/vbrc", + "@id": "https://bioregistry.io/registry/pscdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.", + "http://purl.org/dc/terms/description": "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Viral Bioinformatics Resource Center" + "@value": "Protein Structural Change Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/vbrc" + "@id": "https://fairsharing.org/FAIRsharing.3d4jx0" }, { - "@id": "https://registry.identifiers.org/registry/vbrc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VBRC" + "@id": "https://registry.identifiers.org/registry/pscdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc" + "@id": "https://bioregistry.io/metaregistry/biocontext/PSCDB" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://vbrc.org/" + "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html" }, - "https://bioregistry.io/schema/#0000005": "35742", - "https://bioregistry.io/schema/#0000006": "http://vbrc.org/gene_detail.asp?gene_id=$1", + "https://bioregistry.io/schema/#0000005": "051", + "https://bioregistry.io/schema/#0000006": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://vbrc.org/gene_detail.asp?gene_id=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pscdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://vbrc.org/gene_detail.asp?gene_id=35742" + "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/051.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vbrc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "pscdb" } }, { - "@id": "http://aber-owl.net/ontology/FLOPO", + "@id": "https://fairsharing.org/FAIRsharing.84c1a7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/mint", + "@id": "https://bioregistry.io/registry/ino", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals.", + "http://purl.org/dc/terms/description": "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/INO-ontology/ino" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular Interaction Database" + "@value": "Interaction Network Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/mint" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MINT" + "@id": "http://www.ontobee.org/ontology/INO" }, { - "@id": "https://www.uniprot.org/database/DB-0158" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino" }, { - "@id": "http://edamontology.org/data_2615" + "@id": "https://bioportal.bioontology.org/ontologies/INO" }, { - "@id": "https://www.re3data.org/repository/r3d100010414" + "@id": "http://aber-owl.net/ontology/INO" }, { - "@id": "https://registry.identifiers.org/registry/mint" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO" }, { - "@id": "https://fairsharing.org/FAIRsharing.2bdvmk" + "@id": "https://www.obofoundry.org/ontology/ino" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint" + "@id": "https://fairsharing.org/FAIRsharing.mm72as" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "interaction" + "@value": "ontology" }, { "@value": "life science" }, { - "@value": "proteomics" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mint.bio.uniroma2.it" + "@id": "https://github.com/INO-ontology/ino" + }, + "https://bioregistry.io/schema/#0000005": "0000003", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/INO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ino.owl" }, - "https://bioregistry.io/schema/#0000005": "6978836", - "https://bioregistry.io/schema/#0000006": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,7}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5084-9000" + "@id": "https://orcid.org/0000-0001-9189-9661" }, - "https://bioregistry.io/schema/#0000024": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/INO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-6978836" + "@id": "http://purl.obolibrary.org/obo/INO_0000003" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mint" - } - }, - { - "@id": "http://aber-owl.net/ontology/SEP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1c1738", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "ino" } }, { - "@id": "https://fairsharing.org/FAIRsharing.akmeb9", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/umbbd.compound", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The set of prefixes used in the Cellosaurus resource" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/umbbd" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UM-BBD compound" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P8121" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.compound" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://umbbd.ethz.ch/" - }, - "https://bioregistry.io/schema/#0000005": "c0001", - "https://bioregistry.io/schema/#0000006": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1", - "https://bioregistry.io/schema/#0000008": "^c\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UM-BBD_compID" - }, - "https://bioregistry.io/schema/#0000024": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=c0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "umbbd.compound" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dg.4dfc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/flopo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/tahh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terminology of Anatomy of Human Histology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB" }, { - "@id": "https://www.obofoundry.org/ontology/tahh" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO" }, { - "@value": "ontology" - } - ], - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAHH_$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N9278d875d4954bfe96e8c9fb58122b64" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAHH_", - "https://bioregistry.io/schema/#0000029": { - "@value": "tahh" - } - }, - { - "@id": "_:N9278d875d4954bfe96e8c9fb58122b64", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre Sprumont" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pierre.sprumont@unifr.ch" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0058", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/datanator", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/datanator.gene" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR" }, { - "@id": "https://bioregistry.io/registry/datanator.metabolite" - } - ] - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FLU", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wwy1ns", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/BCGO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/DDPHENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/mirbase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "miRBase pre-miRNA" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP" }, { - "@id": "https://www.re3data.org/repository/r3d100010566" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB" }, { - "@id": "https://fairsharing.org/FAIRsharing.hmgte8" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD" }, { - "@id": "https://registry.bio2kg.org/resource/mirbase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB" }, { - "@id": "http://edamontology.org/data_2642" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC" }, { - "@id": "http://www.wikidata.org/entity/P2870" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC" }, { - "@id": "https://registry.identifiers.org/registry/mirbase" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs" + }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata" }, { - "@value": "rna" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB" }, { - "@value": "gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mirbase.org/" - }, - "https://bioregistry.io/schema/#0000005": "MI0026471", - "https://bioregistry.io/schema/#0000006": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1", - "https://bioregistry.io/schema/#0000008": "^MI\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0026471" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirbase" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0028", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VECTORBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/UBERON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/broad", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Broad Fungal Genome Initiative" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive" + }, { - "@id": "https://registry.identifiers.org/registry/broad" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/" - }, - "https://bioregistry.io/schema/#0000005": "S7000002168151102", - "https://bioregistry.io/schema/#0000006": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1", - "https://bioregistry.io/schema/#0000008": "^S\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=S7000002168151102" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "broad" - } - }, - { - "@id": "https://bioregistry.io/registry/sciflection", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sciflection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio" + }, { - "@id": "https://registry.identifiers.org/registry/sciflection" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABM" }, { - "@id": "https://www.re3data.org/repository/r3d100013413" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sciformation.com/sciflection.html" - }, - "https://bioregistry.io/schema/#0000005": "5ede4273-b26c-4ea4-adb7-3ce294ab3397", - "https://bioregistry.io/schema/#0000006": "https://sciflection.com/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://sciflection.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sciflection.com/5ede4273-b26c-4ea4-adb7-3ce294ab3397" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sciflection" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/flymine", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/tgn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Getty Thesaurus of Geographic Names" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bartoc.org/en/node/109" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.getty.edu/research/tools/vocabularies/tgn/" - }, - "https://bioregistry.io/schema/#0000005": "1023371", - "https://bioregistry.io/schema/#0000006": "http://vocab.getty.edu/page/tgn/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://vocab.getty.edu/page/tgn/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://vocab.getty.edu/page/tgn/1023371" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tgn" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-4855-2571", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matthias Samwald" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "matthias.samwald@meduniwien.ac.at" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ECOCORE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH" + }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DrugBank" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DOI" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/InterPro" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NRFC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RFAM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RATMAP" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LIMORE" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PharmacoDB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CelloPub" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SEED" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MetaboLights" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CABRI" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/WiCell" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCBI_TaxID" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SoyBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/AddexBio" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DGRC" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbSNP" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ViPR" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ECOCYC" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Lonza" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Center for Biotechnology Information Registry" + "@value": "Cellosaurus Registry" }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" + "@value": "https://web.expasy.org/cellosaurus/" }, "https://bioregistry.io/schema/#0000005": { - "@value": "ECOCYC" + "@value": "4DN" }, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Na7005e8d9c2d4562a087947131137d39" + "@id": "https://orcid.org/0000-0003-2826-6444" } }, { - "@id": "_:Na7005e8d9c2d4562a087947131137d39", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GenBank Support" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gb-admin@ncbi.nlm.nih.gov" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/bto", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/qtldb", + "@id": "http://www.wikidata.org/entity/P2158", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/foodon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent.", - "http://purl.org/dc/terms/hasPart": [ + "http://purl.org/dc/terms/description": "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/FoodOntology/foodon" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Food Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/pigqtldb" + "@id": "https://registry.identifiers.org/registry/foodon" }, { - "@id": "https://bioregistry.io/registry/sheepqtldb" + "@id": "http://agroportal.lirmm.fr/ontologies/FOODON" }, { - "@id": "https://bioregistry.io/registry/chickenqtldb" + "@id": "https://fairsharing.org/FAIRsharing.dzxae" }, { - "@id": "https://bioregistry.io/registry/cattleqtldb" + "@id": "http://aber-owl.net/ontology/FOODON" + }, + { + "@id": "https://www.obofoundry.org/ontology/foodon" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FOODON" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon" + }, + { + "@id": "http://www.ontobee.org/ontology/FOODON" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "botany" + }, + { + "@value": "medicine" + }, + { + "@value": "ontology" + }, + { + "@value": "environmental science" + }, + { + "@value": "obo" + }, + { + "@value": "agriculture" } ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome QTL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/qtldb" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org/QTLdb" + "@id": "https://foodon.org/" + }, + "https://bioregistry.io/schema/#0000005": "03307879", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOODON_$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/foodon.owl" }, - "https://bioregistry.io/schema/#0000005": "4685", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/eo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + } + ], + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/one" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/fobi" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/maxo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8844-9165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOODON_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:4685" + "@id": "http://purl.obolibrary.org/obo/FOODON_03307879" }, "https://bioregistry.io/schema/#0000029": { - "@value": "qtldb" + "@value": "foodon" } }, { - "@id": "https://bioregistry.io/registry/otl", + "@id": "https://bioportal.bioontology.org/ontologies/SCDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/bykdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.", + "http://purl.org/dc/terms/description": "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Oryza Tag Line" + "@value": "Bacterial Tyrosine Kinase Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/otl" + "@id": "https://registry.identifiers.org/registry/bykdb" }, { - "@id": "https://registry.bio2kg.org/resource/otl" + "@id": "https://registry.bio2kg.org/resource/bykdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OTL" + "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl" + "@id": "https://fairsharing.org/FAIRsharing.jr30xc" }, { - "@id": "https://fairsharing.org/FAIRsharing.61c2x6" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "domain" }, { - "@value": "dna" + "@value": "sequence" + }, + { + "@value": "microbial" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://oryzatagline.cirad.fr/" + "@id": "https://bykdb.ibcp.fr/BYKdb/" + }, + "https://bioregistry.io/schema/#0000005": "A0A009E7X8", + "https://bioregistry.io/schema/#0000006": "https://bykdb.ibcp.fr/data/html/annotated/$1.html", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" }, - "https://bioregistry.io/schema/#0000005": "AADB12", - "https://bioregistry.io/schema/#0000006": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1", - "https://bioregistry.io/schema/#0000008": "^A[A-Z]+\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bykdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=AADB12" + "@id": "https://bykdb.ibcp.fr/data/html/annotated/A0A009E7X8.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "otl" + "@value": "bykdb" } }, { - "@id": "https://bioregistry.io/registry/enm", + "@id": "https://www.re3data.org/repository/r3d100010229", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/vto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.", + "http://purl.org/dc/terms/description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/phenoscape/vertebrate-taxonomy-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "eNanoMapper ontology" + "@value": "Vertebrate Taxonomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ENM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vto" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm" + "@id": "http://aber-owl.net/ontology/VTO" }, { - "@id": "https://fairsharing.org/FAIRsharing.2gpf81" + "@id": "http://www.ontobee.org/ontology/VTO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ENM" + "@id": "https://fairsharing.org/FAIRsharing.akmeb9" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VTO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/VTO" + }, + { + "@id": "https://www.obofoundry.org/ontology/vto" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "health science" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" + }, + { + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.enanomapper.net/" + "@id": "https://github.com/phenoscape/vertebrate-taxonomy-ontology" }, - "https://bioregistry.io/schema/#0000005": "8000221", - "https://bioregistry.io/schema/#0000006": "http://purl.enanomapper.org/onto/ENM_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "9008500", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://enanomapper.github.io/ontologies/releases/10.0/enanomapper.owl" + "@id": "http://purl.obolibrary.org/obo/vto.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" + "@id": "https://orcid.org/0000-0002-8688-6599" }, - "https://bioregistry.io/schema/#0000024": "http://purl.enanomapper.org/onto/ENM_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VTO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.enanomapper.org/onto/ENM_8000221" + "@id": "http://purl.obolibrary.org/obo/VTO_9008500" }, "https://bioregistry.io/schema/#0000029": { - "@value": "enm" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7mnebr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "vto" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/geo", + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND", + "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0003-2148-9135", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alan Bridge" - }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "alan.bridge@isb-sib.ch" - }, - { - "@value": "swisslipids@isb-sib.ch" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ipi", + "@id": "https://bioregistry.io/registry/pmr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers.", + "http://purl.org/dc/terms/description": "Resource for the community to store, retrieve, search, reference, and reuse CellML models.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Protein Index" + "@value": "Physical Medicine and Rehabilitation" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/ipi" + "@id": "https://bioportal.bioontology.org/ontologies/PMR" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPI" + "@id": "http://aber-owl.net/ontology/PMR" + }, + { + "@id": "https://registry.identifiers.org/registry/pmr" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bcjrnq" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "systems biology" + }, + { + "@value": "physiology" + }, + { + "@value": "mathematics" + }, + { + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "life science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/IPI" + "@id": "https://www.auckland.ac.nz/en.html" }, - "https://bioregistry.io/schema/#0000005": "IPI00000001", - "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ipi:", + "https://bioregistry.io/schema/#0000005": "ebf69ca24298b28b2361e7d43eb52d6c", + "https://bioregistry.io/schema/#0000006": "https://models.physiomeproject.org/exposure/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9]{32,32}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/PMR/4/pmr.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8646-5463" + }, + "https://bioregistry.io/schema/#0000024": "https://models.physiomeproject.org/exposure/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=IPI00000001&format=default" + "@id": "https://models.physiomeproject.org/exposure/ebf69ca24298b28b2361e7d43eb52d6c" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ipi" + "@value": "pmr" } }, { - "@id": "https://registry.identifiers.org/registry/signor", + "@id": "http://www.ontobee.org/ontology/UO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage", + "@id": "https://bioregistry.io/metaregistry/biocontext/RNAMODS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB", + "@id": "https://www.obofoundry.org/ontology/aism", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.wikidata.org/entity/P938", + "@id": "https://orcid.org/0000-0002-3734-1859", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Marc Ciriello" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Marc_Ciriello@hms.harvard.edu" + } + }, + { + "@id": "https://orcid.org/0000-0001-9727-2544", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hans Ienasescu" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "haiiu@dtu.dk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/CLO", + "@id": "http://aber-owl.net/ontology/HSAPDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/biokc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML).", + "@id": "http://edamontology.org/data_1106", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioKC" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/biokc" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wwwen.uni.lu/lcsb" - }, - "https://bioregistry.io/schema/#0000005": "bkc640", - "https://bioregistry.io/schema/#0000006": "https://biokb.lcsb.uni.lu/fact/$1", - "https://bioregistry.io/schema/#0000008": "^bkc[0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biokb.lcsb.uni.lu/fact/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biokb.lcsb.uni.lu/fact/bkc640" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biokc" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs", + "@id": "https://www.obofoundry.org/ontology/ontoneo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CEPH", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/mfoem", + "@id": "https://bioregistry.io/registry/gno", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.", + "http://purl.org/dc/terms/description": "An ontology for glycans based on GlyTouCan, but organized by subsumption.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/jannahastings/emotion-ontology" + "@id": "https://github.com/glygen-glycan-data/GNOme" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Emotion Ontology" + "@value": "Glycan Naming and Subsumption Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.dx30m8" - }, - { - "@id": "http://www.ontobee.org/ontology/MFOEM" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem" + "@id": "http://aber-owl.net/ontology/GNO" }, { - "@id": "https://www.obofoundry.org/ontology/mfoem" + "@id": "https://bioportal.bioontology.org/ontologies/GNO" }, { - "@id": "http://aber-owl.net/ontology/MFOEM" + "@id": "https://www.obofoundry.org/ontology/gno" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFOEM" + "@id": "http://www.ontobee.org/ontology/GNO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "ontology" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/jannahastings/emotion-ontology" + "@id": "https://gnome.glyomics.org/" }, - "https://bioregistry.io/schema/#0000005": "000204", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFOEM_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000005": "10004892", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GNO_$1", + "https://bioregistry.io/schema/#0000008": "^(\\d{8}|(\\w+\\d+\\w+))$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mfoem.owl" + "@id": "http://purl.obolibrary.org/obo/gno.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3469-4923" + "@id": "https://orcid.org/0000-0001-5168-3196" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFOEM_", + "https://bioregistry.io/schema/#0000023": { + "@value": "gnome" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GNO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MFOEM_000204" + "@id": "http://purl.obolibrary.org/obo/GNO_10004892" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mfoem" + "@value": "gno" } }, { - "@id": "https://bioregistry.io/registry/irct", + "@id": "https://bioregistry.io/registry/signor", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space.", + "http://purl.org/dc/terms/description": "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/signor.relation" + }, "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Iranian Registry of Clinical Trials" + "@value": "Signaling Network Open Resource" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/signor" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ss78t4" + }, + { + "@id": "https://www.uniprot.org/database/DB-0206" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "biology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://en.irct.ir/" + "@id": "https://signor.uniroma2.it/" }, - "https://bioregistry.io/schema/#0000005": "IRCT20080904001199N7", - "https://bioregistry.io/schema/#0000008": "^IRCT\\d+N\\d+$", + "https://bioregistry.io/schema/#0000005": "SIGNOR-C41", + "https://bioregistry.io/schema/#0000006": "https://signor.uniroma2.it/relation_result.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^SIGNOR\\-[A-Z]+\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9528-6018" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "SIGNOR" + }, + "https://bioregistry.io/schema/#0000024": "https://signor.uniroma2.it/relation_result.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://signor.uniroma2.it/relation_result.php?id=SIGNOR-C41" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "irct" + "@value": "signor" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DINTO", + "@id": "https://bioportal.bioontology.org/ontologies/TADS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB", + "@id": "https://bioregistry.io/metaregistry/biocontext/OPM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/iuphar.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco", + "@id": "https://www.obofoundry.org/ontology/emap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2q8c28", + "@id": "https://fairsharing.org/FAIRsharing.yytevr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.fb99fa", + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OHPI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/storedb", + "@id": "https://bioregistry.io/registry/kegg.drug", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/storedb.file" - }, + "http://purl.org/dc/terms/description": "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/storedb.study" + "@id": "https://bioregistry.io/registry/kegg" }, { - "@id": "https://bioregistry.io/registry/storedb.dataset" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Store DB" + "@value": "KEGG Drug" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG" }, { - "@id": "https://www.re3data.org/repository/r3d100011049" + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "https://registry.identifiers.org/registry/storedb" + "@id": "http://edamontology.org/data_2609" }, { - "@id": "https://fairsharing.org/FAIRsharing.6h8d2r" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ecology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug" }, { - "@value": "preclinical studies" + "@id": "https://registry.identifiers.org/registry/kegg.drug" }, { - "@value": "epidemiology" - }, + "@id": "https://registry.bio2kg.org/resource/kegg.drug" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.jp/kegg/drug/" + }, + "https://bioregistry.io/schema/#0000005": "D00123", + "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^D\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "biomedical science" + "@value": "KEGG DRUG" }, { - "@value": "life science" + "@value": "KEGG.DRUG" } ], + "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.kegg.jp/entry/D00123" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.drug" + } + }, + { + "@id": "https://bioregistry.io/registry/syoid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gemina Symptom Ontology" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "syoid" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/VT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/phrr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Philippine Health Research Registry" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.storedb.org/" + "@id": "https://registry.healthresearch.ph" }, - "https://bioregistry.io/schema/#0000005": "STUDY1040", - "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/?$1", - "https://bioregistry.io/schema/#0000008": "^(STUDY|FILE|DATASET)\\d+$", + "https://bioregistry.io/schema/#0000005": "4195", + "https://bioregistry.io/schema/#0000006": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5111-7263" - }, - "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/?", + "https://bioregistry.io/schema/#0000024": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.storedb.org/?STUDY1040" + "@id": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=4195" }, "https://bioregistry.io/schema/#0000029": { - "@value": "storedb" + "@value": "phrr" } }, { - "@id": "https://bioregistry.io/registry/ccds", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/XAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0060", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/psi.mod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DARC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.619eqr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GSSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/drugcentral", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.", + "http://purl.org/dc/terms/description": "DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Consensus CDS" + "@value": "Drug Central" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ccds" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds" + "@id": "https://www.uniprot.org/database/DB-0239" }, { - "@id": "https://registry.bio2kg.org/resource/ccds" + "@id": "https://fairsharing.org/FAIRsharing.3me82d" }, { - "@id": "https://fairsharing.org/FAIRsharing.46s4nt" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS" + "@id": "https://registry.identifiers.org/registry/drugcentral" }, { - "@id": "https://www.uniprot.org/database/DB-0187" + "@id": "http://www.wikidata.org/entity/P11198" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "pharmacy" }, { - "@value": "life science" + "@value": "biomedical science" }, { - "@value": "gene" + "@value": "drug repositioning" + }, + { + "@value": "pharmacology" + }, + { + "@value": "drug development" + }, + { + "@value": "drug discovery" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/CCDS/" + "@id": "http://drugcentral.org" }, - "https://bioregistry.io/schema/#0000005": "CCDS13573.1", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1", - "https://bioregistry.io/schema/#0000008": "^CCDS\\d+\\.\\d+$", + "https://bioregistry.io/schema/#0000005": "307", + "https://bioregistry.io/schema/#0000006": "http://drugcentral.org/drugcard/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6195-6976" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "Drug_Central" + }, + "https://bioregistry.io/schema/#0000024": "http://drugcentral.org/drugcard/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=CCDS13573.1" + "@id": "http://drugcentral.org/drugcard/307" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ccds" + "@value": "drugcentral" } }, { - "@id": "https://bioregistry.io/registry/mmdb", + "@id": "https://fairsharing.org/FAIRsharing.dpkb5f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/vbo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites.", + "http://purl.org/dc/terms/description": "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/monarch-initiative/vertebrate-breed-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular Modeling Database" + "@value": "Vertebrate Breed Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2667" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB" + "@id": "http://www.ontobee.org/ontology/VBO" }, { - "@id": "https://registry.bio2kg.org/resource/mmdb" + "@id": "https://www.obofoundry.org/ontology/vbo" }, { - "@id": "https://registry.identifiers.org/registry/mmdb" + "@id": "http://aber-owl.net/ontology/VBO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "interaction" - }, - { - "@value": "small molecule" - }, - { - "@value": "structure" + "@value": "ontology" }, { - "@value": "dna" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/sites/entrez?db=structure" + "@id": "https://github.com/monarch-initiative/vertebrate-breed-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000038", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VBO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vbo.owl" }, - "https://bioregistry.io/schema/#0000005": "50885", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=", + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4142-7153" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VBO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=50885" + "@id": "http://purl.obolibrary.org/obo/VBO_0000038" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mmdb" + "@value": "vbo" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/ctd.gene", + "@id": "https://bioregistry.io/registry/apid.interactions", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/ctd" - } - ], + "http://purl.org/dc/terms/description": "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CTD Gene" + "@value": "APID Interactomes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene" - }, - { - "@id": "https://registry.identifiers.org/registry/ctd.gene" - }, - { - "@id": "https://www.uniprot.org/database/DB-0140" + "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE" + "@id": "https://registry.identifiers.org/registry/apid.interactions" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ctdbase.org/" + "@id": "http://cicblade.dep.usal.es:8080/APID/" }, - "https://bioregistry.io/schema/#0000005": "101", - "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=gene&acc=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "P01116", + "https://bioregistry.io/schema/#0000006": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbigene" + "@id": "https://bioregistry.io/registry/uniprot" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=gene&acc=", + "https://bioregistry.io/schema/#0000024": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ctdbase.org/detail.go?type=gene&acc=101" + "@id": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=P01116" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ctd.gene" + "@value": "apid.interactions" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO", + "@id": "https://orcid.org/0000-0001-7647-6097", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mingxun Wang" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "miw023@ucsd.edu" + }, + { + "@value": "mingxun.wang@cs.ucr.edu" + } + ] + }, + { + "@id": "http://edamontology.org/data_2626", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC", + "@id": "https://www.uniprot.org/database/DB-0236", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3etvdn", + "@id": "https://registry.identifiers.org/registry/gateway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HGNC", + "@id": "https://registry.identifiers.org/registry/ligandbox", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/gramene.gene", + "@id": "https://registry.bio2kg.org/resource/bold", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SISU", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/virsirna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ICD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/grin.taxonomy", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.", + "http://purl.org/dc/terms/description": "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene Gene" + "@value": "GRIN URL" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN" }, { - "@id": "https://registry.identifiers.org/registry/gramene.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY" + }, + { + "@id": "http://www.wikidata.org/entity/P1421" + }, + { + "@id": "https://registry.identifiers.org/registry/grin.taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/" + "@id": "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en" }, - "https://bioregistry.io/schema/#0000005": "GR:0080039", - "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/genes/search_gene?acc=$1", - "https://bioregistry.io/schema/#0000008": "^GR\\:\\d+$", + "https://bioregistry.io/schema/#0000005": "19333", + "https://bioregistry.io/schema/#0000006": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "GR_GENE" - }, - "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/genes/search_gene?acc=", + "https://bioregistry.io/schema/#0000024": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gramene.org/db/genes/search_gene?acc=GR:0080039" + "@id": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?19333" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.gene" + "@value": "grin.taxonomy" } }, { - "@id": "https://bioregistry.io/registry/oci", + "@id": "https://bioregistry.io/registry/mmp.cat", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Each OCI (Open Citation Identifier) has a simple structure: oci:-, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first is the identifier for the citing bibliographic resource, while the second is the identifier for the cited bibliographic resource.", + "http://purl.org/dc/terms/description": "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Citation Identifier" + "@value": "MarCat" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/oci" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCI" + "@id": "https://registry.identifiers.org/registry/mmp.cat" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://opencitations.net" + "@id": "https://mmp.sfb.uit.no/databases/marcat/" }, - "https://bioregistry.io/schema/#0000005": "01027931310-01022252312", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/oci/$1", - "https://bioregistry.io/schema/#0000008": "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$", + "https://bioregistry.io/schema/#0000005": "MMP743597.11", + "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marcat/#/records/$1", + "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/oci/", + "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marcat/#/records/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/oc/oci/01027931310-01022252312" + "@id": "https://mmp.sfb.uit.no/databases/marcat/#/records/MMP743597.11" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oci" + "@value": "mmp.cat" } }, { - "@id": "https://registry.bio2kg.org/resource/atc", + "@id": "https://registry.identifiers.org/registry/miriam.collection", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/pdb", + "@id": "https://bioregistry.io/registry/csd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules.", + "http://purl.org/dc/terms/description": "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PDB Structure" + "@value": "Cambridge Structural Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/pdbj" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB" - }, - { - "@id": "https://registry.identifiers.org/registry/pdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010910" - }, - { - "@id": "http://edamontology.org/data_1127" - }, - { - "@id": "http://www.wikidata.org/entity/P638" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB" - }, - { - "@id": "https://www.uniprot.org/database/DB-0172" + "@id": "https://registry.identifiers.org/registry/csd" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB" + "@id": "https://fairsharing.org/FAIRsharing.vs7865" }, { - "@id": "https://fairsharing.org/FAIRsharing.rs2815" + "@id": "https://www.re3data.org/repository/r3d100010197" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structural biology" - }, - { - "@value": "proteomics" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "structure" + "@value": "chemistry" }, { - "@value": "virology" + "@value": "organic chemistry" }, { - "@value": "epidemiology" + "@value": "biochemistry" }, { - "@value": "protein" + "@value": "organic molecular chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wwpdb.org/" + "@id": "https://www.ccdc.cam.ac.uk/" }, - "https://bioregistry.io/schema/#0000005": "2gc4", - "https://bioregistry.io/schema/#0000006": "https://www.wwpdb.org/pdb?id=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", + "https://bioregistry.io/schema/#0000005": "PELNAW", + "https://bioregistry.io/schema/#0000006": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{6}(\\d{2})?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6690-5863" + "@id": "https://orcid.org/0000-0002-6062-7492" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "pdbe" - }, - { - "@value": "wwpdb" - }, - { - "@value": "RCSB_PDB" - }, - { - "@value": "pdbj" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.wwpdb.org/pdb?id=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/csd:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wwpdb.org/pdb?id=2gc4" + "@id": "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:PELNAW&sid=IDORG" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pdb" + "@value": "csd" } }, { - "@id": "https://registry.bio2kg.org/resource/citexplore", + "@id": "https://registry.bio2kg.org/resource/paleodb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cstr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_334", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P698", + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/seed.reaction", + "@id": "https://bioregistry.io/registry/co_350", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions.", + "http://purl.org/dc/terms/description": "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SEED Reactions" + "@value": "Oat ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/seed.reaction" + "@id": "https://fairsharing.org/FAIRsharing.35e1c3" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_350" + }, + { + "@id": "https://cropontology.org/ontology/CO_350" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "agriculture" + }, + { + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://modelseed.org/biochem/reactions/" + "@id": "https://cropontology.org/ontology/CO_350/Oat" + }, + "https://bioregistry.io/schema/#0000005": "0000215", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_350:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_350/Oat/owl" }, - "https://bioregistry.io/schema/#0000005": "rxn00001", - "https://bioregistry.io/schema/#0000006": "http://modelseed.org/biochem/reactions/$1", - "https://bioregistry.io/schema/#0000008": "^rxn\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://modelseed.org/biochem/reactions/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4849-628X" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_350:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://modelseed.org/biochem/reactions/rxn00001" + "@id": "https://cropontology.org/rdf/CO_350:0000215" }, "https://bioregistry.io/schema/#0000029": { - "@value": "seed.reaction" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/imr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.TARGET", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/chemidplus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "co_350" } }, { - "@id": "https://www.obofoundry.org/ontology/omo", + "@id": "http://aber-owl.net/ontology/VARIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zwtww5", + "@id": "https://registry.identifiers.org/registry/gmd.gcms", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/pseudomonas", + "@id": "https://bioregistry.io/registry/phosphopoint.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation.", + "http://purl.org/dc/terms/description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pseudomonas Genome Database" + "@value": "PhosphoPoint Phosphoprotein" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas" + "@id": "https://registry.identifiers.org/registry/phosphopoint.protein" }, { - "@id": "https://registry.identifiers.org/registry/pseudomonas" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSEUDOMONAS" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pseudomonas.com/" + "@id": "http://kinase.bioinformatics.tw/" }, - "https://bioregistry.io/schema/#0000005": "PSEEN0001", - "https://bioregistry.io/schema/#0000006": "http://www.pseudomonas.com/feature/show/?locus_tag=$1", - "https://bioregistry.io/schema/#0000008": "^P\\w+$", + "https://bioregistry.io/schema/#0000005": "AURKA", + "https://bioregistry.io/schema/#0000006": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pseudomonas.com/feature/show/?locus_tag=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/phosphopoint.protein:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pseudomonas.com/feature/show/?locus_tag=PSEEN0001" + "@id": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=0" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pseudomonas" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ensembl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "phosphopoint.protein" } }, { - "@id": "https://cropontology.org/ontology/CO_359", + "@id": "http://aber-owl.net/ontology/CMF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/pride", + "@id": "https://fairsharing.org/FAIRsharing.gdszhh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/iro", + "@id": "https://bioregistry.io/registry/gear", "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/IGS/gEAR" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Insect Resistance Ontology" + "@value": "Gene Expression Analysis Resource" }, - "https://bioregistry.io/schema/#0000005": "0000008", - "https://bioregistry.io/schema/#0000006": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://umgear.org" + }, + "https://bioregistry.io/schema/#0000005": "d.a59037e8", + "https://bioregistry.io/schema/#0000006": "https://umgear.org/p?id=$1", + "https://bioregistry.io/schema/#0000008": "^[dp]\\.[a-z0-9]{8}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5705-5710" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://umgear.org/p?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:0000008" + "@id": "https://umgear.org/p?id=d.a59037e8" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iro" + "@value": "gear" } }, { - "@id": "https://bioregistry.io/registry/fbbi", + "@id": "http://aber-owl.net/ontology/HTN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/biocarta.pathway", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.", + "http://purl.org/dc/terms/description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/CRBS/Biological_Imaging_Methods_Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biological Imaging Methods Ontology" + "@value": "BioCarta Pathway" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi" - }, - { - "@id": "http://www.ontobee.org/ontology/FBbi" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FBbi" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ny3z9j" - }, - { - "@id": "https://www.obofoundry.org/ontology/fbbi" - }, - { - "@id": "https://registry.bio2kg.org/resource/fbbi" - }, - { - "@id": "http://aber-owl.net/ontology/FBbi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, - { - "@value": "experiment" - }, - { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/biocarta.pathway" }, { - "@value": "imaging" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCARTA.PATHWAY" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cellimagelibrary.org/" - }, - "https://bioregistry.io/schema/#0000005": "00000268", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBbi_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fbbi.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8841-5870" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "FBbi" + "@id": "https://www.biocarta.com/" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBbi_", + "https://bioregistry.io/schema/#0000005": "h_aktPathway", + "https://bioregistry.io/schema/#0000006": "https://cgap.nci.nih.gov/Pathways/BioCarta/$1", + "https://bioregistry.io/schema/#0000008": "^([hm]\\_)?\\w+Pathway$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cgap.nci.nih.gov/Pathways/BioCarta/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FBbi_00000268" + "@id": "https://cgap.nci.nih.gov/Pathways/BioCarta/h_aktPathway" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fbbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/t3db", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "biocarta.pathway" } }, { - "@id": "https://www.obofoundry.org/ontology/t4fs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://orcid.org/0000-0002-9553-7227", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "G. Thomas Hayman" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "gthayman@mcw.edu" } }, { - "@id": "https://registry.identifiers.org/registry/pmap.cutdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb", + "@id": "https://www.obofoundry.org/ontology/fobi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/pgx", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P1748", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/AGRO", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.120", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/wbbt", + "@id": "https://bioregistry.io/registry/micro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology about the gross anatomy of the C. elegans", + "http://purl.org/dc/terms/description": "An ontology of prokaryotic phenotypic and metabolic characters", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" + "@id": "https://github.com/carrineblank/MicrO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "C. elegans Gross Anatomy Ontology" + "@value": "Ontology of Prokaryotic Phenotypic and Metabolic Characters" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt" - }, - { - "@id": "http://aber-owl.net/ontology/WBBT" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.phk7dd" - }, - { - "@id": "https://www.obofoundry.org/ontology/wbbt" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt" + "@id": "https://fairsharing.org/FAIRsharing.brhpb0" }, { - "@id": "https://bioportal.bioontology.org/ontologies/WB-BT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro" }, { - "@id": "http://www.ontobee.org/ontology/WBbt" + "@id": "http://aber-owl.net/ontology/MICRO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt" + "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO" }, { - "@id": "https://registry.bio2kg.org/resource/wbbt" + "@id": "http://www.ontobee.org/ontology/MICRO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt" + "@id": "https://www.obofoundry.org/ontology/micro" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "microbiology" }, { "@value": "ontology" }, { - "@value": "anatomy" - }, - { - "@value": "life science" + "@value": "bioinformatics" }, { - "@value": "worm" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" + "@id": "https://github.com/carrineblank/MicrO" }, - "https://bioregistry.io/schema/#0000005": "0001290", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBbt_$1", + "https://bioregistry.io/schema/#0000005": "0002999", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MICRO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/wbbt.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8151-7479" + "@id": "http://purl.obolibrary.org/obo/micro.owl" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "WBbt" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mco" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBbt_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/WBbt_0001290" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2100-6351" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MICRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "wbbt" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "micro" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy", + "@id": "http://aber-owl.net/ontology/HGNC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-5320-2023", + "@id": "https://orcid.org/0000-0002-8374-1941", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maciej Antczak" + "@value": "Miguel A. Fortuna" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Maciej.Antczak@cs.put.poznan.pl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8337e2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "fortuna@ebd.csic.es" } }, { - "@id": "https://fairsharing.org/FAIRsharing.f63h4k", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/pfam", + "@id": "https://bioregistry.io/registry/chemspider", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.", + "http://purl.org/dc/terms/description": "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pfam" + "@value": "ChemSpider" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100012850" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam" - }, - { - "@id": "https://www.uniprot.org/database/DB-0073" + "@id": "https://registry.bio2kg.org/resource/chemspider" }, { - "@id": "http://edamontology.org/data_1138" + "@id": "http://www.wikidata.org/entity/P661" }, { - "@id": "https://fairsharing.org/FAIRsharing.y3scf6" + "@id": "https://registry.identifiers.org/registry/chemspider" }, { - "@id": "https://registry.identifiers.org/registry/pfam" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM" + "@id": "https://semanticscience.org/resource/CHEMINF_000405" }, { - "@id": "https://registry.bio2kg.org/resource/pfam" + "@id": "https://fairsharing.org/FAIRsharing.96f3gm" }, { - "@id": "http://www.wikidata.org/entity/P3519" + "@id": "http://edamontology.org/data_1173" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM" + "@id": "https://www.re3data.org/repository/r3d100010205" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "life science" }, { - "@value": "biology" + "@value": "chemistry" }, { - "@value": "domain" + "@value": "structure" + }, + { + "@value": "molecules" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/interpro/" + "@id": "http://www.chemspider.com/" }, - "https://bioregistry.io/schema/#0000005": "PF11779", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/entry/pfam/$1", - "https://bioregistry.io/schema/#0000008": "^PF\\d{5}$", + "https://bioregistry.io/schema/#0000005": "56586", + "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/Chemical-Structure.$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6982-4660" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "PF" + "@id": "https://orcid.org/0000-0002-0412-9018" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/entry/pfam/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ChemSpiderID" + }, + { + "@value": "Chemspider" + } + ], + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/chemspider:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11779" + "@id": "http://www.chemspider.com/Chemical-Structure.56586.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pfam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "chemspider" } }, { - "@id": "https://bioregistry.io/registry/gxa.gene", + "@id": "https://bioregistry.io/registry/ymdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes.", + "http://purl.org/dc/terms/description": "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GXA Gene" + "@value": "Yeast Metabolome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene" + "@id": "https://www.re3data.org/repository/r3d100012733" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE" + "@id": "https://fairsharing.org/FAIRsharing.tawpg2" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "metabolomics" }, { - "@id": "https://registry.identifiers.org/registry/gxa.gene" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/gxa/" + "@id": "http://www.ymdb.ca" }, - "https://bioregistry.io/schema/#0000005": "AT4G01080", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gxa/genes/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "YMDB00001", + "https://bioregistry.io/schema/#0000006": "http://www.ymdb.ca/compounds/$1", + "https://bioregistry.io/schema/#0000008": "^YMDB\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gxa/genes/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, + "https://bioregistry.io/schema/#0000024": "http://www.ymdb.ca/compounds/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/gxa/genes/AT4G01080" + "@id": "http://www.ymdb.ca/compounds/YMDB00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gxa.gene" + "@value": "ymdb" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/nucc.characteristic", + "@id": "https://bioregistry.io/registry/hpath", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan.", + "http://purl.org/dc/terms/description": "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Uniform Claim Committee Characteristic" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Novartis/hpath" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nucc.org/index.php/code-sets-mainmenu-41/provider-characteristics-mainmenu-39" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Histopathology Ontology" }, - "https://bioregistry.io/schema/#0000005": "2A", - "https://bioregistry.io/schema/#0000008": "^\\d(\\d|\\w)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "nucc.characteristic" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/nlx.mol", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://fairsharing.org/FAIRsharing.kj336a" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Molecules" - }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "proteins" - }, - { - "@value": "neuroscience" + "@value": "microbiology" }, { - "@value": "biology" + "@value": "ontology" }, { - "@value": "chemistry" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://github.com/Novartis/hpath" }, - "https://bioregistry.io/schema/#0000005": "90806", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1", + "https://bioregistry.io/schema/#0000005": "2000191", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MC_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/Novartis/hpath/master/src/hpath.obo" }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "NLXMOL" + "@value": "MC" }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MC_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_90806" + "@id": "http://purl.obolibrary.org/obo/MC_2000191" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.mol" + "@value": "hpath" } }, { - "@id": "https://bioregistry.io/registry/civic.vid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/civic" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC variant" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/civic.vid" - }, - { - "@id": "http://www.wikidata.org/entity/P3329" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "12", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/variant/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/variant/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/variant/12" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.vid" + "@id": "https://www.re3data.org/repository/r3d100012015", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.ontobee.org/ontology/miRNAO", + "@id": "https://bioregistry.io/metaregistry/biocontext/HSAPDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/t4fs", + "@id": "https://bioportal.bioontology.org/ontologies/HAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0148", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/reto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A terminology for the skills necessary to make data FAIR and to keep it FAIR.", + "http://purl.org/dc/terms/description": "Regulation of Transcription", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/terms4fairskills/FAIRterminology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "terms4FAIRskills" + "@value": "Regulation of Transcription Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs" - }, - { - "@id": "http://aber-owl.net/ontology/T4FS" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto" }, { - "@id": "https://fairsharing.org/FAIRsharing.fb99fa" + "@id": "http://aber-owl.net/ontology/RETO" }, { - "@id": "https://www.obofoundry.org/ontology/t4fs" + "@id": "https://fairsharing.org/FAIRsharing.4qyf0f" }, { - "@id": "http://www.ontobee.org/ontology/T4FS" + "@id": "https://bioportal.bioontology.org/ontologies/RETO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "life science" }, { - "@value": "subject agnostic" + "@value": "transcriptomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/terms4fairskills/FAIRterminology" + "@id": "http://www.semantic-systems-biology.org/apo" }, - "https://bioregistry.io/schema/#0000005": "0000127", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/T4FS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/t4fs.owl" + "@id": "https://www.bio.ntnu.no/ontology/ReTO/reto.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/T4FS_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/T4FS_0000127" + "@id": "_:N641d58cfc2994b59bbd0f1fa78f75e74" }, "https://bioregistry.io/schema/#0000029": { - "@value": "t4fs" + "@value": "reto" } }, { - "@id": "http://aber-owl.net/ontology/REX", + "@id": "_:N641d58cfc2994b59bbd0f1fa78f75e74", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vladimir Mironov" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "vladimir.n.mironov@gmail.com" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/neuromorpho", + "@id": "https://bioportal.bioontology.org/ontologies/SEP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_2625", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0206", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/trnadbce", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons.", + "http://purl.org/dc/terms/description": "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroMorpho" + "@value": "tRNA Gene Database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://edamontology.org/data_2657" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/trnadbce" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho" + "@value": "gene" }, { - "@id": "https://registry.bio2kg.org/resource/neuromorpho" + "@value": "genome" }, { - "@id": "https://registry.identifiers.org/registry/neuromorpho" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "anatomy" + "@value": "dna" }, { - "@value": "structure" + "@value": "rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neuromorpho.org/index.jsp" + "@id": "http://trna.nagahama-i-bio.ac.jp" }, - "https://bioregistry.io/schema/#0000005": "Rosa2", - "https://bioregistry.io/schema/#0000006": "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "265912", + "https://bioregistry.io/schema/#0000006": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://neuromorpho.org/neuron_info.jsp?neuron_name=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://neuromorpho.org/neuron_info.jsp?neuron_name=Rosa2" + "@id": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=265912" }, "https://bioregistry.io/schema/#0000029": { - "@value": "neuromorpho" + "@value": "trnadbce" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT", + "@id": "https://bioregistry.io/metaregistry/biocontext/CAS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/psipar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.", + "@id": "https://bioportal.bioontology.org/ontologies/NCRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Affinity Reagents" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/psipar" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.psidev.info/psi-par" - }, - "https://bioregistry.io/schema/#0000005": "0116", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:0116" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "psipar" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/dragondb.locus", + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PLO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/EUPATH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/envo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_348", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.ligand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/dragondb" + "@id": "https://bioregistry.io/registry/kegg" }, { "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DragonDB Locus" + "@value": "KEGG LIGAND" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/dragondb.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.antirrhinum.net/" + "@id": "http://www.genome.ad.jp/kegg/docs/upd_ligand.html" }, - "https://bioregistry.io/schema/#0000005": "DEF", - "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?cpd:$1", "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.locus:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=DEF&class=Locus" - }, + "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?cpd:", "https://bioregistry.io/schema/#0000029": { - "@value": "dragondb.locus" + "@value": "kegg.ligand" } }, { - "@id": "https://bioregistry.io/registry/mycobank", + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/massive", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations.", + "http://purl.org/dc/terms/description": "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://ccms-ucsd.github.io/MassIVEDocumentation" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fungal Nomenclature and Species Bank" + "@value": "MassIVE" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.v8se8r" + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank" + "@id": "https://fairsharing.org/FAIRsharing.LYsiMd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK" + "@id": "https://www.uniprot.org/database/DB-0241" }, { - "@id": "https://www.re3data.org/repository/r3d100011222" + "@id": "https://registry.identifiers.org/registry/massive" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "functional genomics" }, { - "@id": "https://registry.bio2kg.org/resource/mycobank" + "@value": "metabolomics" }, { - "@id": "https://registry.identifiers.org/registry/mycobank" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "proteomics" + }, { - "@value": "biology" + "@value": "metaproteomics" }, { - "@value": "classification" + "@value": "omics" }, { - "@value": "taxonomy" + "@value": "phenomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mycobank.org/" + "@id": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp" }, - "https://bioregistry.io/schema/#0000005": "349124", - "https://bioregistry.io/schema/#0000006": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "MSV000082131", + "https://bioregistry.io/schema/#0000006": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1", + "https://bioregistry.io/schema/#0000008": "^MSV\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7647-6097" + }, + "https://bioregistry.io/schema/#0000024": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=349124" + "@id": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000082131" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mycobank" + "@value": "massive" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio", + "@id": "https://fairsharing.org/FAIRsharing.6s749p", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/seed.compound", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/uspto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.", + "http://purl.org/dc/terms/description": "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SEED Compound" + "@value": "United States Patent and Trademark Office" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound" + "@id": "https://registry.identifiers.org/registry/uspto" }, { - "@id": "https://registry.identifiers.org/registry/seed.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://modelseed.org/" + "@id": "http://patft.uspto.gov/netahtml/PTO/index.html" }, - "https://bioregistry.io/schema/#0000005": "cpd15380", - "https://bioregistry.io/schema/#0000006": "http://modelseed.org/biochem/compounds/$1", - "https://bioregistry.io/schema/#0000008": "^cpd\\d+$", + "https://bioregistry.io/schema/#0000005": "4145692", + "https://bioregistry.io/schema/#0000006": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1", + "https://bioregistry.io/schema/#0000008": "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://modelseed.org/biochem/compounds/", + "https://bioregistry.io/schema/#0000024": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://modelseed.org/biochem/compounds/cpd15380" + "@id": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/4145692" }, "https://bioregistry.io/schema/#0000029": { - "@value": "seed.compound" + "@value": "uspto" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH", + "@id": "https://bioregistry.io/registry/4dn.replicate", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database portal containing replicate experiments of different assays and samples", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "4D Nucleome Data Portal Experiment Replicate" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://data.4dnucleome.org/experiment-set-replicates/" + }, + "https://bioregistry.io/schema/#0000005": "4DNESWX1J3QU", + "https://bioregistry.io/schema/#0000006": "https://data.4dnucleome.org/experiment-set-replicates/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://data.4dnucleome.org/experiment-set-replicates/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://data.4dnucleome.org/experiment-set-replicates/4DNESWX1J3QU" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "4dn.replicate" } }, { - "@id": "https://registry.bio2kg.org/resource/img.taxon", + "@id": "https://registry.identifiers.org/registry/ndc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SACCH", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100010803", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010561", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/fma", + "@id": "https://bioregistry.io/registry/apd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy.", + "http://purl.org/dc/terms/description": "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://bitbucket.org/uwsig/fma" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Foundational Model of Anatomy" + "@value": "Antimicrobial Peptide Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA" - }, - { - "@id": "http://www.ontobee.org/ontology/FMA" - }, - { - "@id": "http://www.wikidata.org/entity/P1402" - }, - { - "@id": "https://registry.identifiers.org/registry/fma" - }, - { - "@id": "https://registry.bio2kg.org/resource/fma" - }, - { - "@id": "https://bartoc.org/en/node/571" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma" - }, - { - "@id": "http://edamontology.org/data_1182" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119" - }, - { - "@id": "https://www.obofoundry.org/ontology/fma" + "@id": "https://www.re3data.org/repository/r3d100012901" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FMA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FMA" + "@id": "https://registry.identifiers.org/registry/apd" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma" + "@id": "https://registry.bio2kg.org/resource/apd" }, { - "@id": "http://aber-owl.net/ontology/FMA" + "@id": "https://bioregistry.io/metaregistry/biocontext/APD" }, { - "@id": "https://fairsharing.org/FAIRsharing.x56jsy" + "@id": "https://fairsharing.org/FAIRsharing.ctwd7b" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "owl" - }, - { - "@value": "obo" - }, - { - "@value": "human" - }, - { - "@value": "ontology" - }, - { - "@value": "radiology" + "@value": "biology" }, { - "@value": "anatomy" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://si.washington.edu/projects/fma" - }, - "https://bioregistry.io/schema/#0000005": "63189", - "https://bioregistry.io/schema/#0000006": "http://purl.org/sig/ont/fma/fma$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fma.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N3fa0685659fd4de4814b1950f8c1dede" + "@id": "http://aps.unmc.edu/AP/" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "FMAID" - }, - { - "@value": "FMA_RETIRED" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.org/sig/ont/fma/fma", + "https://bioregistry.io/schema/#0000005": "01001", + "https://bioregistry.io/schema/#0000006": "http://aps.unmc.edu/AP/database/query_output.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://aps.unmc.edu/AP/database/query_output.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/sig/ont/fma/fma63189" + "@id": "http://aps.unmc.edu/AP/database/query_output.php?ID=01001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fma" - } - }, - { - "@id": "_:N3fa0685659fd4de4814b1950f8c1dede", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Onard Mejino" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mejino@u.washington.edu" + "@value": "apd" } }, { - "@id": "http://www.wikidata.org/entity/P11089", + "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://orcid.org/0000-0001-7251-9504", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Henriette Harmse" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "henriette007@ebi.ac.uk" } }, { - "@id": "https://registry.bio2kg.org/resource/splicenest", + "@id": "http://www.ontobee.org/ontology/CLAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://orcid.org/0000-0001-9853-5668", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Philippe Rocca-Serra" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "philippe.rocca-serra@oerc.ox.ac.uk" + "@id": "https://www.obofoundry.org/ontology/ino", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/4dn", + "@id": "https://registry.bio2kg.org/resource/mmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/tcdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome", + "@id": "https://bioregistry.io/metaregistry/biocontext/dctypes", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pazar", + "@id": "https://bioregistry.io/registry/cto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.", + "http://purl.org/dc/terms/description": "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ClinicalTrialOntology/CTO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pazar Transcription Factor" + "@value": "Clinical Trials Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.33yggg" + "@id": "https://www.obofoundry.org/ontology/cto" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto" }, { - "@id": "https://registry.identifiers.org/registry/pazar" + "@id": "https://bioportal.bioontology.org/ontologies/CTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar" + "@id": "https://fairsharing.org/FAIRsharing.qp211a" }, { - "@id": "https://registry.bio2kg.org/resource/pazar" + "@id": "http://www.ontobee.org/ontology/CTO" + }, + { + "@id": "http://aber-owl.net/ontology/CTO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "neurobiology" }, { - "@value": "rna" + "@value": "biomedical science" }, { - "@value": "dna" + "@value": "ontology" }, { - "@value": "regulation" + "@value": "preclinical studies" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pazar.info/" + "@id": "https://github.com/ClinicalTrialOntology/CTO/" + }, + "https://bioregistry.io/schema/#0000005": "0000022", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cto.owl" }, - "https://bioregistry.io/schema/#0000005": "TF0001053", - "https://bioregistry.io/schema/#0000006": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1", - "https://bioregistry.io/schema/#0000008": "^TF\\w+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6098-6412" + "@id": "https://orcid.org/0000-0001-9896-3531" }, - "https://bioregistry.io/schema/#0000024": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CTO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=TF0001053" + "@id": "http://purl.obolibrary.org/obo/CTO_0000022" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pazar" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/identifiers.namespace", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.m3jtpg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "cto" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr", + "@id": "https://bioregistry.io/registry/oryzabase.strain", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Oryzabase Strain" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/oryzabase.strain" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" + }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oryzabase.strain" } }, { - "@id": "https://www.re3data.org/repository/r3d100013331", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/registry/edam.data", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/edam" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/edamontology/edamontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EDAM Data" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://edamontology.org" + }, + "https://bioregistry.io/schema/#0000005": "1664", + "https://bioregistry.io/schema/#0000006": "http://edamontology.org/data_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1509-4981" + }, + "https://bioregistry.io/schema/#0000024": "http://edamontology.org/data_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://edamontology.org/data_1664" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "edam.data" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/registry/umbbd.rule", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/umbbd" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EAWAG Biocatalysis/Biodegradation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID" + }, + { + "@id": "https://registry.identifiers.org/registry/umbbd.rule" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules" + }, + "https://bioregistry.io/schema/#0000005": "bt0001", + "https://bioregistry.io/schema/#0000006": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1", + "https://bioregistry.io/schema/#0000008": "^bt\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "UM-BBD_ruleID" + }, + "https://bioregistry.io/schema/#0000024": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=bt0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "umbbd.rule" } }, { - "@id": "https://bartoc.org/en/node/671", + "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/co_340", + "@id": "https://bioregistry.io/registry/mipmod", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cowpea Trait Dictionary in template v5 - IITA - August 2015", + "http://purl.org/dc/terms/description": "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cowpea ontology" + "@value": "MIPModDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340" + "@id": "https://registry.identifiers.org/registry/mipmod" }, { - "@id": "https://fairsharing.org/FAIRsharing.31apg2" + "@id": "https://registry.bio2kg.org/resource/mipmod" }, { - "@id": "https://cropontology.org/ontology/CO_340" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_340" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" - }, - { - "@value": "ontology" + "@value": "structure" }, { - "@value": "botany" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_340/Cowpea" - }, - "https://bioregistry.io/schema/#0000005": "0000639", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_340:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_340/Cowpea/owl" + "@id": "http://bioinfo.iitk.ac.in/MIPModDB" }, + "https://bioregistry.io/schema/#0000005": "HOSAPI0399", + "https://bioregistry.io/schema/#0000006": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Ndb2ef7d265d64641aedff7e10678a2d4" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_340:", + "https://bioregistry.io/schema/#0000024": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_340:0000639" + "@id": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=HOSAPI0399" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_340" + "@value": "mipmod" } }, { - "@id": "_:Ndb2ef7d265d64641aedff7e10678a2d4", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://fairsharing.org/FAIRsharing.mqvqde", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/hpmr", + "@id": "https://cropontology.org/ontology/CO_336", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.fungi", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.obofoundry.org/ontology/bto", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/gnomad", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community (from https://gnomad.broadinstitute.org).", + "@id": "https://registry.identifiers.org/registry/gold.meta", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genome Aggregation Database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gnomad.broadinstitute.org" - }, - "https://bioregistry.io/schema/#0000005": "1-55516888-G-GA", - "https://bioregistry.io/schema/#0000006": "https://gnomad.broadinstitute.org/variant/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6025-0015" - }, - "https://bioregistry.io/schema/#0000024": "https://gnomad.broadinstitute.org/variant/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://gnomad.broadinstitute.org/variant/1-55516888-G-GA" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gnomad" - } - }, - { - "@id": "https://orcid.org/0000-0002-8741-7823", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/aio" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lindsey N. Anderson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "lindsey.anderson@pnnl.gov" - } - }, - { - "@id": "https://bartoc.org/en/node/1940", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance", + "@id": "http://aber-owl.net/ontology/CARO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml", + "@id": "https://bioregistry.io/registry/sopharm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Suggested Ontology for Pharmacogenomics" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM" + }, + { + "@id": "https://www.obofoundry.org/ontology/sopharm" + }, + { + "@id": "http://aber-owl.net/ontology/SOPHARM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.loria.fr/~coulet/sopharm2.0_description.php" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SOPHARM_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/SOPHARM/18/sopharm.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1466-062X" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SOPHARM_", + "https://bioregistry.io/schema/#0000029": { + "@value": "sopharm" } }, { - "@id": "https://bioregistry.io/registry/chemdb", + "@id": "https://bioregistry.io/registry/chebi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.", + "http://purl.org/dc/terms/description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/fix" + }, + { + "@id": "https://bioregistry.io/registry/rex" + } + ], "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ebi-chebi/ChEBI" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChemDB" + "@value": "Chemical Entities of Biological Interest" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB" + "@id": "http://aber-owl.net/ontology/CHEBI" }, { - "@id": "https://registry.bio2kg.org/resource/chemdb" + "@id": "http://www.ontobee.org/ontology/CHEBI" }, { - "@id": "https://registry.identifiers.org/registry/chemdb" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI" }, { - "@id": "https://fairsharing.org/FAIRsharing.dstf7h" + "@id": "https://registry.bio2kg.org/resource/chebi" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012626" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CHEBI" + }, + { + "@id": "https://bartoc.org/en/node/558" + }, + { + "@id": "http://edamontology.org/data_1174" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.62qk8w" + }, + { + "@id": "https://www.obofoundry.org/ontology/chebi" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi" + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000407" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi" + }, + { + "@id": "https://registry.identifiers.org/registry/chebi" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI" + }, + { + "@id": "http://www.wikidata.org/entity/P683" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biochemistry" - }, - { - "@value": "preclinical studies" + "@value": "chemical" }, { - "@value": "systems biology" + "@value": "obo" }, { - "@value": "small molecule" + "@value": "chemistry" }, { - "@value": "biomedical science" + "@value": "biochemistry" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cdb.ics.uci.edu/" + "@id": "http://www.ebi.ac.uk/chebi" }, - "https://bioregistry.io/schema/#0000005": "3966782", - "https://bioregistry.io/schema/#0000006": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1", + "https://bioregistry.io/schema/#0000005": "24867", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHEBI_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/chebi.owl" + }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=", + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/mco" + }, + { + "@id": "https://bioregistry.io/registry/cl" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/genepio" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/fobi" + }, + { + "@id": "https://bioregistry.io/registry/proco" + }, + { + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/scdo" + }, + { + "@id": "https://bioregistry.io/registry/xpo" + }, + { + "@id": "https://bioregistry.io/registry/maxo" + }, + { + "@id": "https://bioregistry.io/registry/pcl" + }, + { + "@id": "https://bioregistry.io/registry/chiro" + }, + { + "@id": "https://bioregistry.io/registry/cdno" + }, + { + "@id": "https://bioregistry.io/registry/ecocore" + }, + { + "@id": "https://bioregistry.io/registry/ecto" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8123-5351" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "CHEBI" + }, + { + "@value": "CHEBIID" + }, + { + "@value": "ChEBI" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHEBI_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=3966782" + "@id": "http://purl.obolibrary.org/obo/CHEBI_24867" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chemdb" + "@value": "chebi" } }, { - "@id": "https://orcid.org/0000-0003-2826-6444", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Amos Bairoch" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Amos.Bairoch@sib.swiss" + "@id": "https://registry.identifiers.org/registry/subtiwiki", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR", + "@id": "https://www.obofoundry.org/ontology/bto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.xn3pb3", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000569", + "@id": "https://www.obofoundry.org/ontology/rs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.uniprot.org/database/DB-0121", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FIX", + "@id": "http://www.ontobee.org/ontology/WBbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/mediadive.solution", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", + "@id": "https://registry.identifiers.org/registry/uniparc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-9228-8838", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MediaDive Solution" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mediadive.dsmz.de/solutions" - }, - "https://bioregistry.io/schema/#0000005": "S6", - "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/solutions/$1", - "https://bioregistry.io/schema/#0000008": "^S\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3909-7201" - }, - "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/solutions/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mediadive.dsmz.de/solutions/S6" + "@value": "Mark Jensen" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mediadive.solution" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mpjensen@buffalo.edu" } }, { - "@id": "https://registry.bio2kg.org/resource/sstoss", + "@id": "https://bioportal.bioontology.org/ontologies/SPD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/metacyc.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/registry/panther.pathway", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/panther" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PANTHER Pathway" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/panther.pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY" + }, + { + "@id": "http://edamontology.org/data_1161" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pantherdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "P00024", + "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1", + "https://bioregistry.io/schema/#0000008": "^P\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=P00024" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "panther.pathway" } }, { - "@id": "https://www.obofoundry.org/ontology/omrse", + "@id": "https://bioregistry.io/registry/lei", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Global LEI Index" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei" + }, + { + "@id": "https://registry.identifiers.org/registry/lei" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.gleif.org/" + }, + "https://bioregistry.io/schema/#0000005": "HWUPKR0MPOU8FGXBT394", + "https://bioregistry.io/schema/#0000006": "https://www.gleif.org/lei/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.gleif.org/lei/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.gleif.org/lei/HWUPKR0MPOU8FGXBT394" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lei" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXO", + "@id": "https://bioregistry.io/registry/aaindex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifier of an entry from the AAindex database.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AAindex" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://edamontology.org/data_1128" + }, + { + "@id": "https://registry.bio2kg.org/resource/aaindex" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.ad.jp/aaindex/" + }, + "https://bioregistry.io/schema/#0000005": "BUNA790102", + "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?aaindex:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.genome.jp/dbget-bin/www_bget?aaindex:BUNA790102" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "aaindex" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIXS", + "@id": "https://registry.identifiers.org/registry/gpmdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/biolegend", + "@id": "https://bioregistry.io/registry/affy.probeset", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioLegend is a life sciences supply vendor.", + "http://purl.org/dc/terms/description": "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioLegend" + "@value": "Affymetrix Probeset" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "reagents" - }, - { - "@value": "vendor" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "life sciences" + "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET" }, { - "@value": "assays" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset" }, { - "@value": "antibodies" + "@id": "https://registry.identifiers.org/registry/affy.probeset" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.biolegend.com" + "@id": "http://www.affymetrix.com/" }, - "https://bioregistry.io/schema/#0000005": "3403", - "https://bioregistry.io/schema/#0000006": "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "243002_at", + "https://bioregistry.io/schema/#0000006": "https://www.affymetrix.com/LinkServlet?probeset=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4,}((_[asx])?_at)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.biolegend.com/Default.aspx?ID=6664&productid=", + "https://bioregistry.io/schema/#0000024": "https://www.affymetrix.com/LinkServlet?probeset=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.biolegend.com/Default.aspx?ID=6664&productid=3403" + "@id": "https://www.affymetrix.com/LinkServlet?probeset=243002_at" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biolegend" + "@value": "affy.probeset" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO", + "@id": "https://registry.bio2kg.org/resource/tair.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/fao", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cst", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MONDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/arraymap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/xpo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the anatomy of fungi.", + "http://purl.org/dc/terms/description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/fungal-anatomy-ontology" + "@id": "https://github.com/obophenotype/xenopus-phenotype-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fungal gross anatomy" + "@value": "Xenopus Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao" + "@id": "http://aber-owl.net/ontology/XPO" }, { - "@id": "https://registry.bio2kg.org/resource/fao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAO" + "@id": "https://bioportal.bioontology.org/ontologies/XPO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FAO" + "@id": "http://www.ontobee.org/ontology/XPO" }, { - "@id": "https://fairsharing.org/FAIRsharing.xs6t67" + "@id": "https://www.obofoundry.org/ontology/xpo" }, { - "@id": "http://www.ontobee.org/ontology/FAO" - }, + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.obofoundry.org/ontology/fao" + "@value": "ontology" }, { - "@id": "http://aber-owl.net/ontology/FAO" + "@value": "obo" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/xenopus-phenotype-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0100002", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/xpo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "obo" + "@id": "https://bioregistry.io/registry/bfo" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/xao" }, { - "@value": "microbiology" + "@id": "https://bioregistry.io/registry/cl" }, { - "@value": "fungi" + "@id": "https://bioregistry.io/registry/go" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/ro" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/pato" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/fungal-anatomy-ontology/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6330-7526" + "@id": "https://orcid.org/0000-0002-9611-1279" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FAO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XPO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FAO_0000001" + "@id": "http://purl.obolibrary.org/obo/XPO_0100002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fao" + "@value": "xpo" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2basyz", + "@id": "https://registry.identifiers.org/registry/classyfire", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb", + "@id": "http://aber-owl.net/ontology/DDANAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-2668-4821", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Antony Williams" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "williams.antony@epa.gov" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://cropontology.org/ontology/CO_367", + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.uniprot.org/database/DB-0206", + "@id": "https://www.uniprot.org/database/DB-0097", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.LOCUS", + "@id": "https://bioregistry.io/registry/p3db.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "P3DB Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/p3db.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein" + }, + { + "@id": "https://registry.bio2kg.org/resource/p3db" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "small molecule" + }, + { + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.p3db.org/" + }, + "https://bioregistry.io/schema/#0000005": "70", + "https://bioregistry.io/schema/#0000006": "http://www.p3db.org/protein.php?id=$1&ref=0", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/p3db.protein:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.p3db.org/protein.php?id=70&ref=0" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "p3db.protein" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/WBls", + "@id": "http://aber-owl.net/ontology/SIBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/maizegdb", + "@id": "https://bioportal.bioontology.org/ontologies/BCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo", + "@id": "https://registry.bio2kg.org/resource/abs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/PLANP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0001-8528-090X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Philippe Le Mercier" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Philippe.Lemercier@sib.swiss" } }, { - "@id": "https://www.obofoundry.org/ontology/zp", + "@id": "https://registry.bio2kg.org/resource/archdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CSA", + "@id": "http://www.ontobee.org/ontology/CLYH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.obofoundry.org/ontology/hso", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/edam.data", + "@id": "https://bioregistry.io/registry/virushostdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/edam" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/edamontology/edamontology" + "http://purl.org/dc/terms/description": "Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Data" + "@value": "Virus-HostDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA" + "@id": "https://registry.bio2kg.org/resource/virushostdb" }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "virus" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://edamontology.org" + "@id": "https://www.genome.jp/virushostdb/" }, - "https://bioregistry.io/schema/#0000005": "1664", - "https://bioregistry.io/schema/#0000006": "http://edamontology.org/data_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" + "https://bioregistry.io/schema/#0000005": "438782", + "https://bioregistry.io/schema/#0000006": "https://www.genome.jp/virushostdb/$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbitaxon" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://edamontology.org/data_", + "https://bioregistry.io/schema/#0000024": "https://www.genome.jp/virushostdb/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://edamontology.org/data_1664" + "@id": "https://www.genome.jp/virushostdb/438782" }, "https://bioregistry.io/schema/#0000029": { - "@value": "edam.data" + "@value": "virushostdb" } }, { - "@id": "https://bioregistry.io/registry/obv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections.", + "@id": "https://fairsharing.org/FAIRsharing.7vjq5t", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Austrian Library Network" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/obv" - }, - { - "@id": "https://bartoc.org/en/node/20430" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.obvsg.at/" - }, - "https://bioregistry.io/schema/#0000005": "AC00963334", - "https://bioregistry.io/schema/#0000006": "https://permalink.obvsg.at/$1", - "https://bioregistry.io/schema/#0000008": "^AC[0-9]{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://permalink.obvsg.at/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://permalink.obvsg.at/AC00963334" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "obv" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC", + "@id": "https://fairsharing.org/FAIRsharing.9gqfpm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/cto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fgd5gq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/abcd", + "@id": "https://bioregistry.io/registry/myco.tuber", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies", + "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AntiBodies Chemically Defined database" + "@value": "TubercuList knowledge base" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber" }, { - "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.TUBER" }, { - "@id": "https://www.uniprot.org/database/DB-0236" + "@id": "https://www.uniprot.org/database/DB-0106" + }, + { + "@id": "https://registry.identifiers.org/registry/myco.tuber" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList" + }, + { + "@id": "https://registry.bio2kg.org/resource/tuberculist" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "immunology" + "@value": "dna" }, { - "@value": "molecular biology" + "@value": "protein" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://web.expasy.org/abcd/" + "@id": "http://tuberculist.epfl.ch/" }, - "https://bioregistry.io/schema/#0000005": "AD834", - "https://bioregistry.io/schema/#0000006": "https://web.expasy.org/abcd/ABCD_$1", + "https://bioregistry.io/schema/#0000005": "Rv1908c", + "https://bioregistry.io/schema/#0000006": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1", + "https://bioregistry.io/schema/#0000008": "^Rv\\d{4}(A|B|c)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://web.expasy.org/abcd/ABCD_", + "https://bioregistry.io/schema/#0000023": { + "@value": "TubercuList" + }, + "https://bioregistry.io/schema/#0000024": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://web.expasy.org/abcd/ABCD_AD834" + "@id": "http://tuberculist.epfl.ch/quicksearch.php?gene+name=Rv1908c" }, "https://bioregistry.io/schema/#0000029": { - "@value": "abcd" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/subtiwiki", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jedbbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "myco.tuber" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRISP", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GI", + "@id": "http://edamontology.org/data_3757", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT", + "@id": "https://registry.bio2kg.org/resource/doqcs.model", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES", + "@id": "https://registry.bio2kg.org/resource/imr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bartoc.org/en/node/528", + "@id": "https://bioportal.bioontology.org/ontologies/HOM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/genecards.genenote", + "@id": "https://bioregistry.io/registry/uniprot.journal", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E.", + "http://purl.org/dc/terms/description": "identifier for a scientific journal, in the UniProt database", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Normal Tissue Expression" + "@value": "UniProt journal" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/genenote" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene expression" + "@id": "http://www.wikidata.org/entity/P4616" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genecards.weizmann.ac.il/genenote/" + "@id": "https://www.uniprot.org/journals" }, - "https://bioregistry.io/schema/#0000005": "GC06M052656", - "https://bioregistry.io/schema/#0000006": "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$1&data_type=norm2&results=yes", + "https://bioregistry.io/schema/#0000005": "3546", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/journals/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/genecards.genenote:", + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/journals/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=GC06M052656&data_type=norm2&results=yes" + "@id": "https://www.uniprot.org/journals/3546" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genecards.genenote" + "@value": "uniprot.journal" } }, { - "@id": "https://bioregistry.io/registry/gpcrnava", + "@id": "https://registry.bio2kg.org/resource/aao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11089", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/genecards", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/aaindex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/pharmacodb.dataset", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Variant, which means any (non-artificial) variant that occurs in humans.", + "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GPCR Natural Variants database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/gnd" + "@value": "PharmacoDB Datasets" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathway" - }, - { - "@value": "protein" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://nava.liacs.nl/" + "@id": "https://pharmacodb.ca/datasets" }, - "https://bioregistry.io/schema/#0000005": "1150", - "https://bioregistry.io/schema/#0000006": "http://nava.liacs.nl/cgi-bin/nava.py?id=$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/datasets/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://nava.liacs.nl/cgi-bin/nava.py?id=", + "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/datasets/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://nava.liacs.nl/cgi-bin/nava.py?id=1150" + "@id": "https://pharmacodb.ca/datasets/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gpcrnava" + "@value": "pharmacodb.dataset" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily", + "@id": "https://registry.identifiers.org/registry/intact.molecule", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/EHDAA", + "@id": "https://www.obofoundry.org/ontology/sepio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/genatlas", + "@id": "https://bioregistry.io/registry/confident.event", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GenAtlas is a database containing information on human genes, markers and phenotypes.", + "http://purl.org/dc/terms/description": "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genatlas" + "@value": "ConfIDent Event" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/genatlas" - }, - { - "@id": "https://www.uniprot.org/database/DB-0027" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas" - }, - { - "@id": "https://registry.bio2kg.org/resource/genatlas" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pmg2vd" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "human" - }, - { - "@value": "life science" + "@value": "conferences" }, { - "@value": "disorder" + "@value": "meetings" }, { - "@value": "gene" + "@value": "metascience" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genatlas.medecine.univ-paris5.fr/" + "@id": "https://www.confident-conference.org/index.php/Category:Event" }, - "https://bioregistry.io/schema/#0000005": "HBB", - "https://bioregistry.io/schema/#0000006": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "37af84f2-bfd7-4653-b608-eaff44febba6", + "https://bioregistry.io/schema/#0000006": "https://www.confident-conference.org/index.php/Event:$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1595-3213" + }, + "https://bioregistry.io/schema/#0000024": "https://www.confident-conference.org/index.php/Event:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=HBB" + "@id": "https://www.confident-conference.org/index.php/Event:37af84f2-bfd7-4653-b608-eaff44febba6" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genatlas" + "@value": "confident.event" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank", + "@id": "http://www.wikidata.org/entity/P2946", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://orcid.org/0000-0002-0091-7981", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Trushar Shah" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "tm.shah@cgiar.org" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.mutant", + "@id": "http://agroportal.lirmm.fr/ontologies/FOODON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.beb855", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/registry/eo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Planteome/plant-environment-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plant Environment Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo" + }, + { + "@id": "https://registry.bio2kg.org/resource/eo" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/EO" + }, + { + "@id": "https://www.obofoundry.org/ontology/eo" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EO" + }, + { + "@id": "http://aber-owl.net/ontology/EO" + }, + { + "@id": "https://registry.identifiers.org/registry/eo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + }, + { + "@value": "plant" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://planteome.org/" + }, + "https://bioregistry.io/schema/#0000005": "0007404", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/eo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/foodon" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1005-8383" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "eo" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt", + "@id": "http://www.ontobee.org/ontology/VO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://www.wikidata.org/entity/P665", + "@id": "http://aber-owl.net/ontology/RETO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/epo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology designed to support the semantic annotation of epidemiology resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Epidemiology Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/epo" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EPO" + }, + { + "@id": "http://www.ontobee.org/ontology/EPO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://code.google.com/p/epidemiology-ontology/" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EPO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/epidemiology-ontology/epo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EPO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "epo" + } + }, + { + "@id": "http://www.wikidata.org/entity/P715", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/chembl.cell", + "@id": "https://www.obofoundry.org/ontology/eupath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6dba71", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/drugbank.salt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Chemistry resources", + "http://purl.org/dc/terms/description": "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets.", "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/drugbank" }, { - "@id": "https://bioregistry.io/registry/chembl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChEMBL database of bioactive drug-like small molecules - Cell lines section" + "@value": "DrugBank Salts" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.drugbank.ca" }, - "http://www.w3.org/ns/dcat#keyword": [ + "https://bioregistry.io/schema/#0000005": "DBSALT001211", + "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/salts/$1", + "https://bioregistry.io/schema/#0000008": "^DBSALT\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/salts/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://go.drugbank.com/salts/DBSALT001211" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drugbank.salt" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/PR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CARO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gsso", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2abjs5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/genprop", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/civic.sid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source.", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "bioactivities" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@value": "cell lines" + "@id": "https://bioregistry.io/registry/civic" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chembldb" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC Source" }, - "https://bioregistry.io/schema/#0000005": "CHEMBL3307800", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1", - "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0294-5484" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/civic.sid" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ChEMBL-Cells" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/cell_line_report_card/", + "https://bioregistry.io/schema/#0000005": "62", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/sources/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/sources/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/chembl/cell_line_report_card/CHEMBL3307800" + "@id": "https://civicdb.org/links/sources/62" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chembl.cell" + "@value": "civic.sid" } }, { - "@id": "https://bioregistry.io/registry/atfdb.family", + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/agrkb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.", + "http://purl.org/dc/terms/description": "The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.\n\nThe Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:\n\n- [ZFIN](https://zfin.org) - Zebrafish Information Network\n- [WormBase](https://wormbase.org)\n- [MGI](https://www.mgi.org) - Mouse Genome Informatics\n- [RGD](https://rgd.mcw.edu) - Rat Genome Database\n- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database\n- [FlyBase](https://flybase.org)\n- [Xenbase](https://www.xenbase.org)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal TFDB Family" + "@value": "Alliance of Genome Resources Knowledge Base" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "model organism database" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/atfdb.family" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioguo.org/AnimalTFDB/family_index.php" + "@id": "https://www.alliancegenome.org" }, - "https://bioregistry.io/schema/#0000005": "CUT", - "https://bioregistry.io/schema/#0000006": "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "100000000000001", + "https://bioregistry.io/schema/#0000006": "https://www.alliancegenome.org/accession/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]{14}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.bioguo.org/AnimalTFDB/family.php?fam=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.alliancegenome.org/accession/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioguo.org/AnimalTFDB/family.php?fam=CUT" + "@id": "https://www.alliancegenome.org/accession/100000000000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "atfdb.family" + "@value": "agrkb" } }, { - "@id": "http://www.ontobee.org/ontology/ERO", + "@id": "https://registry.bio2kg.org/resource/napp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/nihreporter.project", + "@id": "https://fairsharing.org/FAIRsharing.2s4n8r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/gc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding.", + "http://purl.org/dc/terms/description": "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIH RePORTER" + "@value": "Genetic Code" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://reporter.nih.gov/" + "@id": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html" }, - "https://bioregistry.io/schema/#0000005": "10343835", - "https://bioregistry.io/schema/#0000006": "https://reporter.nih.gov/project-details/$1", + "https://bioregistry.io/schema/#0000005": "11", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000023": { + "@value": "gc_id" }, - "https://bioregistry.io/schema/#0000024": "https://reporter.nih.gov/project-details/", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG", "https://bioregistry.io/schema/#0000027": { - "@id": "https://reporter.nih.gov/project-details/10343835" + "@id": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG11" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nihreporter.project" + "@value": "gc" } }, { - "@id": "https://bioregistry.io/registry/opb", + "@id": "https://registry.identifiers.org/registry/dbgap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.93ee19", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.", + "http://purl.org/dc/terms/description": "OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Physics for Biology" + "@value": "Ontology for computer aided process engineering" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.avt.rwth-aachen.de/cms/AVT/Forschung/Software/~ipts/OntoCape/" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "nfdi4chem.ontocape" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ENVO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/mat", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Minimal set of terms for anatomy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Minimal Anatomical Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPB" - }, - { - "@id": "https://registry.bio2kg.org/resource/opb" - }, - { - "@id": "http://aber-owl.net/ontology/OPB" + "@id": "http://aber-owl.net/ontology/MAT" }, { - "@id": "https://fairsharing.org/FAIRsharing.qcceez" + "@id": "https://bioportal.bioontology.org/ontologies/MAT" }, { - "@id": "https://registry.identifiers.org/registry/opb" + "@id": "https://www.obofoundry.org/ontology/mat" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OPB" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAT" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" - }, - { - "@value": "physics" - }, - { - "@value": "life science" + "@value": "obo" }, { - "@value": "structure" + "@value": "ontology" } ], + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/MAT/3/mat.obo" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nbf7a97dccfd548f696b51aada7d91000" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAT_", + "https://bioregistry.io/schema/#0000029": { + "@value": "mat" + } + }, + { + "@id": "_:Nbf7a97dccfd548f696b51aada7d91000", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jonathan Bard" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "j.bard@ed.ac.uk" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/astd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_346", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-0643-3144", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Simon Jupp" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jupp@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/registry/emsl.project", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Environmental Molecular Sciences Laboratory Project" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioportal.bioontology.org/ontologies/OPB" + "@id": "https://www.emsl.pnnl.gov/projects" }, - "https://bioregistry.io/schema/#0000005": "00573", - "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1", + "https://bioregistry.io/schema/#0000005": "60141", + "https://bioregistry.io/schema/#0000006": "https://www.emsl.pnnl.gov/project/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/OPB/13/opb.owl" - }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2390-6572" + "@id": "https://orcid.org/0000-0002-8683-0050" }, - "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.emsl.pnnl.gov/project/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_00573" + "@id": "https://www.emsl.pnnl.gov/project/60141" }, "https://bioregistry.io/schema/#0000029": { - "@value": "opb" + "@value": "emsl.project" } }, { - "@id": "https://registry.identifiers.org/registry/neurolex", + "@id": "https://registry.identifiers.org/registry/bgee.organ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/CVDO", + "@id": "https://bioregistry.io/registry/dg.4dfc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCI Data Commons Framework Services" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dg.4dfc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nci-crdc.datacommons.io/" + }, + "https://bioregistry.io/schema/#0000005": "81944ba1-81d0-436e-8552-33d77a27834b", + "https://bioregistry.io/schema/#0000006": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/81944ba1-81d0-436e-8552-33d77a27834b" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dg.4dfc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OAE", + "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA", + "@id": "https://registry.identifiers.org/registry/insdc.gca", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19", + "@id": "https://bioportal.bioontology.org/ontologies/VSAO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.GENE", + "@id": "https://www.re3data.org/repository/r3d100010846", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.36pf8q", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/aphidbase.transcript", + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIMI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OARCS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/vto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6yNXYK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vfdb.genus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/salmon", + "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.s5zmbp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/imgt.ligm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms.", + "http://purl.org/dc/terms/description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Salmon Ontology" + "@value": "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SALMON" + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM" }, { - "@id": "http://aber-owl.net/ontology/SALMON" + "@id": "https://registry.identifiers.org/registry/imgt.ligm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM" + }, + { + "@id": "https://registry.bio2kg.org/resource/imgt.ligm" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/LIGM" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "dna" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DataONEorg/sem-prov-ontologies/" - }, - "https://bioregistry.io/schema/#0000005": "00000674", - "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/SALMON_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SALMON/2/salmon.owl" + "@id": "http://www.imgt.org/" }, + "https://bioregistry.io/schema/#0000005": "M94112", + "https://bioregistry.io/schema/#0000006": "http://www.imgt.org/ligmdb/view?id=$1", + "https://bioregistry.io/schema/#0000008": "^M\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" - }, - "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/SALMON_", + "https://bioregistry.io/schema/#0000024": "http://www.imgt.org/ligmdb/view?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://purl.dataone.org/odo/SALMON_00000674" + "@id": "http://www.imgt.org/ligmdb/view?id=M94112" }, "https://bioregistry.io/schema/#0000029": { - "@value": "salmon" + "@value": "imgt.ligm" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO", + "@id": "https://orcid.org/0000-0001-8941-3984", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alayne Cuzick" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "alayne.cuzick@rothamsted.ac.uk" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/dg.4503", + "@id": "https://registry.identifiers.org/registry/clinicaltrials", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/pco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h3y42f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.88v2k0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/col.taiwan", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", + "http://purl.org/dc/terms/description": "Identifier (name code) for a taxon in the catalogue of life in taiwan", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioData Catalyst" + "@value": "Catalogue of Life in Taiwan" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.4503" + "@id": "http://www.wikidata.org/entity/P3088" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gen3.biodatacatalyst.nhlbi.nih.gov" + "@id": "http://taibnet.sinica.edu.tw/home.php" }, - "https://bioregistry.io/schema/#0000005": "0000ffeb-36e0-4a29-b21d-84423bda979d", - "https://bioregistry.io/schema/#0000006": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000005": "431472", + "https://bioregistry.io/schema/#0000006": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/0000ffeb-36e0-4a29-b21d-84423bda979d" + "@id": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=431472" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dg.4503" + "@value": "col.taiwan" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MO", + "@id": "https://bioregistry.io/metaregistry/biocontext/PO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido", + "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-5168-3196", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nathan Edwards" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nje5@georgetown.edu" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase", + "@id": "https://fairsharing.org/FAIRsharing.w4tncg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/pdumdv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Life cycle stages for Platynereis dumerilii", + "@id": "https://registry.bio2kg.org/resource/zfa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies" - }, + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.pathway", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/kegg" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Platynereis Developmental Stages" + "@value": "KEGG Pathways Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/PDUMDV" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY" }, { - "@id": "http://www.ontobee.org/ontology/PdumDv" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDUMDV" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway" }, { - "@id": "https://www.obofoundry.org/ontology/pdumdv" + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV" + "@id": "https://registry.bio2kg.org/resource/kegg.pathway" }, { - "@id": "https://fairsharing.org/FAIRsharing.493qns" + "@id": "https://registry.identifiers.org/registry/kegg.pathway" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_PATHWAY" }, { - "@value": "ontology" - }, + "@id": "http://edamontology.org/data_2343" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pathway" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.jp/kegg/pathway.html" + }, + "https://bioregistry.io/schema/#0000005": "rsk00410", + "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{2,4}\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "life science" + "@value": "KEGG_PATHWAY" }, { - "@value": "developmental biology" + "@value": "KEGG-path" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/PdumDv" - }, - "https://bioregistry.io/schema/#0000005": "0001410", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PdumDv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pdumdv.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "PdumDv" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PdumDv_", + "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PdumDv_0001410" + "@id": "https://www.kegg.jp/entry/rsk00410" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pdumdv" + "@value": "kegg.pathway" } }, { - "@id": "https://bioregistry.io/registry/github.issue", + "@id": "https://registry.identifiers.org/registry/rhea", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ONS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/bitterdb.rec", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An issue in any public repository on GitHub.", + "http://purl.org/dc/terms/description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GitHub Issue" + "@value": "BitterDB Receptor" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "knowledge and information systems" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "version control" + "@id": "https://registry.identifiers.org/registry/bitterdb.rec" }, { - "@value": "software engineering" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec" }, { - "@value": "project management" + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.REC" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/" + "@id": "http://bitterdb.agri.huji.ac.il/dbbitter.php" }, - "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry/424", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/resolve/github/issue/$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/resolve/github/issue/", + "https://bioregistry.io/schema/#0000024": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/resolve/github/issue/biopragmatics/bioregistry/424" + "@id": "http://bitterdb.agri.huji.ac.il/Receptor.php?id=1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "github.issue" + "@value": "bitterdb.rec" } }, { - "@id": "https://cropontology.org/ontology/CO_356", + "@id": "https://fairsharing.org/FAIRsharing.brhpb0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLOSAURUS", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ArrayExpress", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.identifiers.org/registry/bgee.organ", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173", + "@id": "https://www.re3data.org/repository/r3d100013478", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.wikidata.org/entity/P7260", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/PLANA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cdd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1748", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB", + "@id": "https://bioportal.bioontology.org/ontologies/MAMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/miriam", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." + "@id": "https://fairsharing.org/FAIRsharing.e3t0yw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w7bw2y", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/bioregistry.collection", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Manually curated collections of resources stored in the bioregistry", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bioregistry Collections" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioregistry.io/collection" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/collection/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/collection/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/collection/0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bioregistry.collection" + } + }, + { + "@id": "https://bioregistry.io/registry/omit", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OmniSearch/omit" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for MicroRNA Target" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/protonet.cluster" + "@id": "https://www.obofoundry.org/ontology/omit" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.reference" + "@id": "http://aber-owl.net/ontology/OMIT" }, { - "@id": "https://registry.identifiers.org/registry/tritrypdb" + "@id": "https://fairsharing.org/FAIRsharing.mf91p5" }, { - "@id": "https://registry.identifiers.org/registry/vmhgene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit" }, { - "@id": "https://registry.identifiers.org/registry/kegg.orthology" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT" }, { - "@id": "https://registry.identifiers.org/registry/pseudomonas" + "@id": "https://registry.identifiers.org/registry/omit" }, { - "@id": "https://registry.identifiers.org/registry/kegg.drug" + "@id": "http://www.ontobee.org/ontology/OMIT" }, { - "@id": "https://registry.identifiers.org/registry/pw" + "@id": "https://bioportal.bioontology.org/ontologies/OMIT" }, { - "@id": "https://registry.identifiers.org/registry/ga4ghdos" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/myco.lepra" + "@value": "biology" }, { - "@id": "https://registry.identifiers.org/registry/kegg.module" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/qtldb" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/isfinder" - }, - { - "@id": "https://registry.identifiers.org/registry/pdb" - }, - { - "@id": "https://registry.identifiers.org/registry/unipathway.reaction" - }, - { - "@id": "https://registry.identifiers.org/registry/rgd.strain" - }, - { - "@id": "https://registry.identifiers.org/registry/dbgap" - }, - { - "@id": "https://registry.identifiers.org/registry/storedb" - }, - { - "@id": "https://registry.identifiers.org/registry/lipidbank" - }, - { - "@id": "https://registry.identifiers.org/registry/glycomedb" - }, - { - "@id": "https://registry.identifiers.org/registry/drs.anv0" - }, - { - "@id": "https://registry.identifiers.org/registry/omia" - }, - { - "@id": "https://registry.identifiers.org/registry/3dmet" - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.submitter" - }, - { - "@id": "https://registry.identifiers.org/registry/efo" - }, - { - "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary" - }, - { - "@id": "https://registry.identifiers.org/registry/dragondb.allele" - }, - { - "@id": "https://registry.identifiers.org/registry/noncodev4.rna" - }, - { - "@id": "https://registry.identifiers.org/registry/disprot.region" - }, - { - "@id": "https://registry.identifiers.org/registry/glyconavi" - }, - { - "@id": "https://registry.identifiers.org/registry/microscope" - }, - { - "@id": "https://registry.identifiers.org/registry/myco.tuber" - }, - { - "@id": "https://registry.identifiers.org/registry/irefweb" - }, - { - "@id": "https://registry.identifiers.org/registry/dg.f82a1a" - }, - { - "@id": "https://registry.identifiers.org/registry/aspgd.locus" - }, - { - "@id": "https://registry.identifiers.org/registry/worfdb" - }, - { - "@id": "https://registry.identifiers.org/registry/idot" - }, - { - "@id": "https://registry.identifiers.org/registry/wb.rnai" - }, - { - "@id": "https://registry.identifiers.org/registry/mpid" - }, - { - "@id": "https://registry.identifiers.org/registry/clinvar.submission" - }, - { - "@id": "https://registry.identifiers.org/registry/ncim" - }, - { - "@id": "https://registry.identifiers.org/registry/dommino" - }, - { - "@id": "https://registry.identifiers.org/registry/mi" - }, - { - "@id": "https://registry.identifiers.org/registry/imex" - }, - { - "@id": "https://registry.identifiers.org/registry/col" - }, - { - "@id": "https://registry.identifiers.org/registry/ordb" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://omit.cis.usouthal.edu/" + }, + "https://bioregistry.io/schema/#0000005": "0000069", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMIT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/omit.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mco" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2408-2883" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "OMIT" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMIT_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OMIT_0000069" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "omit" + } + }, + { + "@id": "https://bioregistry.io/registry/sheepqtldb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/degradome" + "@id": "https://bioregistry.io/registry/qtldb" }, { - "@id": "https://registry.identifiers.org/registry/dbsnp" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Animal Genome Sheep QTL" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ricenetdb.protein" + "@id": "https://registry.identifiers.org/registry/sheepqtldb" }, { - "@id": "https://registry.identifiers.org/registry/unipathway.compound" + "@id": "https://registry.bio2kg.org/resource/sheepqtldb" }, { - "@id": "https://registry.identifiers.org/registry/hprd" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb" }, { - "@id": "https://registry.identifiers.org/registry/mesh.2012" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/dpv" + "@value": "genome" }, { - "@id": "https://registry.identifiers.org/registry/mirbase.mature" - }, + "@value": "dna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.animalgenome.org/QTLdb" + }, + "https://bioregistry.io/schema/#0000005": "19803", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:19803" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sheepqtldb" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/xco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://aber-owl.net/ontology/PHENX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P671", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mirbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EU89H", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.651n9j", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ms", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HUPO-PSI/psi-ms-CV" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mass spectrometry ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/obv" + "@id": "http://aber-owl.net/ontology/MS" }, { - "@id": "https://registry.identifiers.org/registry/mirbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/MS" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms" }, { - "@id": "https://registry.identifiers.org/registry/sdbs" + "@id": "https://www.obofoundry.org/ontology/ms" }, { - "@id": "https://registry.identifiers.org/registry/csd" + "@id": "https://registry.identifiers.org/registry/ms" }, { - "@id": "https://registry.identifiers.org/registry/signor" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms" }, { - "@id": "https://registry.identifiers.org/registry/dg.anv0" + "@id": "https://bioportal.bioontology.org/ontologies/MS" }, { - "@id": "https://registry.identifiers.org/registry/cosmic" - }, + "@id": "http://www.ontobee.org/ontology/MS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/hpm.protein" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/greengenes" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.psidev.info/groups/controlled-vocabularies" + }, + "https://bioregistry.io/schema/#0000005": "1000560", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ms.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://registry.identifiers.org/registry/gro" + "@id": "https://bioregistry.io/registry/pato" }, { - "@id": "https://registry.identifiers.org/registry/orphanet.ordo" - }, + "@id": "https://bioregistry.io/registry/uo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1767-2343" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MS_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MS_1000560" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ms" + } + }, + { + "@id": "https://orcid.org/0000-0001-6338-1312", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Erik van Nimwegen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "erik.vannimwegen@unibas.ch" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_1181", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MAXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/asap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OMIM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/NIFCELL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ayjdsm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Pfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/dev.ga4ghdos", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Assists in resolving data across cloud resources.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Development Data Object Service" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bdgp.est" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS" }, { - "@id": "https://registry.identifiers.org/registry/mesh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos" }, { - "@id": "https://registry.identifiers.org/registry/sheepqtldb" - }, + "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://github.com/ga4gh/data-object-service-schemas" + }, + "https://bioregistry.io/schema/#0000005": "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00", + "https://bioregistry.io/schema/#0000006": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9\\-:#\\.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dev.ga4ghdos" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.85k1jm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/upheno", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/upheno" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Unified Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/pid.pathway" + "@id": "https://fairsharing.org/FAIRsharing.r41qhx" }, { - "@id": "https://registry.identifiers.org/registry/idoo" + "@id": "https://www.obofoundry.org/ontology/upheno" }, { - "@id": "https://registry.identifiers.org/registry/cellimage" + "@id": "http://www.ontobee.org/ontology/UPHENO" }, { - "@id": "https://registry.identifiers.org/registry/compulyeast" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno" }, { - "@id": "https://registry.identifiers.org/registry/tair.protein" + "@id": "http://aber-owl.net/ontology/UPHENO" }, { - "@id": "https://registry.identifiers.org/registry/cellrepo" + "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO" }, { - "@id": "https://registry.identifiers.org/registry/ligandbook" - }, + "@id": "https://bioportal.bioontology.org/ontologies/UPHENO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/mycobank" + "@value": "phenomics" }, { - "@id": "https://registry.identifiers.org/registry/mobidb" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/lei" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/allergome" - }, + "@value": "evolutionary biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/upheno" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UPHENO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/upheno.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5208-3432" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UPHENO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "upheno" + } + }, + { + "@id": "http://aber-owl.net/ontology/MRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/zea", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010776", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/hoip", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/yuki-yamagata/hoip" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Homeostasis imbalance process ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/supfam" + "@id": "http://aber-owl.net/ontology/HOIP" }, { - "@id": "https://registry.identifiers.org/registry/dbd" - }, + "@id": "https://bioportal.bioontology.org/ontologies/HOIP" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://knowledge.brc.riken.jp/bioresource/ontology/HOIP" + }, + "https://bioregistry.io/schema/#0000005": "0040379", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/HOIP/HOIP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/yuki-yamagata/hoip/raw/master/hoip_0308.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9673-1283" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/HOIP/HOIP_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.bioontology.org/ontology/HOIP/HOIP_0040379" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hoip" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.ELEMENT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/mmsinc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MMsINC" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/mmsinc" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/nextprot" + "@value": "structure" }, { - "@id": "https://registry.identifiers.org/registry/aop.events" - }, + "@value": "small molecule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://mms.dsfarm.unipd.it/MMsINC" + }, + "https://bioregistry.io/schema/#0000005": "MMs00000001", + "https://bioregistry.io/schema/#0000006": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=MMs00000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mmsinc" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OGG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SASBDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/illumina.probe", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Illumina Probe Identifier" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "transcriptomics" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-GEOD-6790/A-GEOD-6790.adf.txt" + }, + "https://bioregistry.io/schema/#0000005": "ILMN_129894", + "https://bioregistry.io/schema/#0000008": "^ILMN_\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "illumina.probe" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/biogrid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/biogrid.interaction" + }, + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BioGRID" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioGRID" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/narcis" + "@id": "https://registry.bio2kg.org/resource/biogrid" }, { - "@id": "https://registry.identifiers.org/registry/gabi" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID" }, { - "@id": "https://registry.identifiers.org/registry/genewiki" + "@id": "https://www.re3data.org/repository/r3d100010350" }, { - "@id": "https://registry.identifiers.org/registry/nmr" + "@id": "https://fairsharing.org/FAIRsharing.9d5f5r" }, { - "@id": "https://registry.identifiers.org/registry/resid" + "@id": "https://www.uniprot.org/database/DB-0184" }, { - "@id": "https://registry.identifiers.org/registry/clb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid" }, { - "@id": "https://registry.identifiers.org/registry/hgnc.genegroup" - }, + "@id": "https://registry.identifiers.org/registry/biogrid" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/po" + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.plant" + "@value": "chemical biology" }, { - "@id": "https://registry.identifiers.org/registry/vmhreaction" + "@value": "cheminformatics" }, { - "@id": "https://registry.identifiers.org/registry/mint" + "@value": "biochemistry" }, { - "@id": "https://registry.identifiers.org/registry/miriam.resource" + "@value": "systems biology" }, { - "@id": "https://registry.identifiers.org/registry/yid" + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/eco" + "@value": "bioinformatics" }, { - "@id": "https://registry.identifiers.org/registry/ascl" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/iuphar.family" + "@value": "proteomics" }, { - "@id": "https://registry.identifiers.org/registry/panther.node" - }, + "@value": "interaction" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://thebiogrid.org/" + }, + "https://bioregistry.io/schema/#0000005": "31623", + "https://bioregistry.io/schema/#0000006": "http://thebiogrid.org/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9713-9994" + }, + "https://bioregistry.io/schema/#0000024": "http://thebiogrid.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://thebiogrid.org/31623" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biogrid" + } + }, + { + "@id": "https://bioregistry.io/registry/lincs.smallmolecule", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LINCS Small Molecule" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/vipr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule" }, { - "@id": "https://registry.identifiers.org/registry/lincs.data" + "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule" }, { - "@id": "https://registry.identifiers.org/registry/licebase" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.SMALLMOLECULE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://lincsportal.ccs.miami.edu/SmallMolecules/" + }, + "https://bioregistry.io/schema/#0000005": "LSM-6306", + "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1", + "https://bioregistry.io/schema/#0000008": "^LSM-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "lincs" + }, + "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/LSM-6306" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lincs.smallmolecule" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://aber-owl.net/ontology/ORNASEQ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rism", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bartoc.org/en/node/445", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SEP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/co_360", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sugar Kelp trait ontology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sugar Kelp trait ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/chickenqtldb" + "@id": "https://fairsharing.org/FAIRsharing.1c1738" }, { - "@id": "https://registry.identifiers.org/registry/metanetx.reaction" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_360" }, { - "@id": "https://registry.identifiers.org/registry/gpcrdb" + "@id": "https://cropontology.org/ontology/CO_360" }, { - "@id": "https://registry.identifiers.org/registry/doqcs.pathway" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/peptideatlas" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/prints" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/bdgp.insertion" - }, + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait" + }, + "https://bioregistry.io/schema/#0000005": "0000071", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_360:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_360/Sugar%20Kelp%20trait/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Ncc707838a44a4b9caf3c1e9d821712ea" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_360:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_360:0000071" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_360" + } + }, + { + "@id": "_:Ncc707838a44a4b9caf3c1e9d821712ea", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/registry/sssom", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/mapping-commons/sssom" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Simple Standard for Sharing Ontological Mappings" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://w3id.org/sssom" + }, + "https://bioregistry.io/schema/#0000005": "mapping_justification", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/sssom/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7356-1779" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/sssom/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/sssom/mapping_justification" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sssom" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2jkxp5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/RBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/icepo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ion Channel Electrophysiology Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://download.nextprot.org/pub/current_release/controlled_vocabularies/" + }, + "https://bioregistry.io/schema/#0000005": "0000002", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/icepo/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/icepo/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/icepo/0000002" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "icepo" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pombase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.proteome", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "UniProt provides proteome sets of proteins whose genomes have been completely sequenced.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/vgnc" + "@id": "https://bioregistry.io/registry/uniprot" }, { - "@id": "https://registry.identifiers.org/registry/nmdc" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Proteomes" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.uniprot.org/proteomes" + }, + "https://bioregistry.io/schema/#0000005": "UP000005640", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/proteomes/$1", + "https://bioregistry.io/schema/#0000008": "^UP\\d{9}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/proteomes/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.uniprot.org/proteomes/UP000005640" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uniprot.proteome" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SEPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://edamontology.org/data_1127", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/sider.effect", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SIDER Side Effect" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/kegg.genome" + "@id": "https://registry.identifiers.org/registry/sider.effect" }, { - "@id": "https://registry.identifiers.org/registry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect" }, { - "@id": "https://registry.identifiers.org/registry/yetfasco" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sideeffects.embl.de/" + }, + "https://bioregistry.io/schema/#0000005": "C0017565", + "https://bioregistry.io/schema/#0000006": "http://sideeffects.embl.de/se/$1", + "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/umls" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://sideeffects.embl.de/se/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://sideeffects.embl.de/se/C0017565" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sider.effect" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mpi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/bco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d05nwx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-3604-3785", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dongsheng Cao" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "oriental-cds@163.com" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pda11d", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nemo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.FAMILY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_366", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CEPH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/drugbank.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Reactions in drugbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DrugBank Reaction" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://go.drugbank.com" + }, + "https://bioregistry.io/schema/#0000005": "1537", + "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/reactions/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/reactions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://go.drugbank.com/reactions/1537" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drugbank.reaction" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CDNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/tarbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TarBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.a0k4cd" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase" + }, + { + "@id": "https://registry.identifiers.org/registry/tarbase" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" + }, + { + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index" + }, + "https://bioregistry.io/schema/#0000005": "hsa-let-7a-2-3p", + "https://bioregistry.io/schema/#0000006": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=hsa-let-7a-2-3p" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tarbase" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012041", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/google.scholar", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Google Scholar Researcher" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://scholar.google.com/" + }, + "https://bioregistry.io/schema/#0000005": "PjrpzUIAAAAJ", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "google.scholar" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.78d3ad", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-5111-7263", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Paul Schofield" + }, + { + "@value": "Dr Paul Schofield" + } + ], + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "pns12@hermes.cam.ac.uk" + }, + { + "@value": "PNS12@cam.ac.uk" + } + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/4dxpress", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ADCAD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010528", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/lbctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lebanon Clinical Trials Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://lbctr.moph.gov.lb/" + }, + "https://bioregistry.io/schema/#0000005": "LBCTR2023015204", + "https://bioregistry.io/schema/#0000008": "^LBCTR\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "lbctr" + } + }, + { + "@id": "https://orcid.org/0000-0001-9254-7318", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rutger Vos" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rutgeraldo@gmail.com" + } + }, + { + "@id": "https://registry.identifiers.org/registry/iao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0003-3889-2879", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Kristian Axelsen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kristian.axelsen@sib.swiss" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_356", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/chickenqtldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gxa.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5p12xh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OGG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://aber-owl.net/ontology/COB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/fplx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FamPlex" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/FPLX" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx" + }, + { + "@id": "http://aber-owl.net/ontology/FPLX" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX" + }, + { + "@id": "https://registry.identifiers.org/registry/fplx" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://sorgerlab.github.io/famplex/" + }, + "https://bioregistry.io/schema/#0000005": "GPIb_IX_V", + "https://bioregistry.io/schema/#0000006": "https://sorgerlab.github.io/famplex/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9][A-Za-z0-9_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9439-5346" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "famplex" + }, + "https://bioregistry.io/schema/#0000024": "https://sorgerlab.github.io/famplex/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sorgerlab.github.io/famplex/GPIb_IX_V" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fplx" + } + }, + { + "@id": "https://registry.identifiers.org/registry/chickenqtldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/begdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0135", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CMF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/sdis", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Selventa legacy disease namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Selventa Diseases" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "selventa" + }, + { + "@value": "bel" + }, + { + "@value": "diseases" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-diseases.txt" + }, + "https://bioregistry.io/schema/#0000005": "D0001", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/sdis/$1", + "https://bioregistry.io/schema/#0000008": "^D\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/sdis/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/sdis/D0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sdis" + } + }, + { + "@id": "https://orcid.org/0000-0002-1142-3063", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Andrew G. McArthur" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mcarthua@mcmaster.ca" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j7esqq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2106", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/doqcs.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9w8ea0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dw22y3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_348", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-3884-3420", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Simon Cox" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dr.shorthair@pm.me" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/apid.interactions", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/sider.drug", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SIDER Drug" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug" + }, + { + "@id": "https://registry.identifiers.org/registry/sider.drug" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sideeffects.embl.de/" + }, + "https://bioregistry.io/schema/#0000005": "2244", + "https://bioregistry.io/schema/#0000006": "http://sideeffects.embl.de/drugs/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://sideeffects.embl.de/drugs/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://sideeffects.embl.de/drugs/2244" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sider.drug" + } + }, + { + "@id": "https://orcid.org/0000-0002-4071-8397", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Zoë May Pendlington" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "zmp@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dcat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010891", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1414v8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_343", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://bioregistry.io/registry/noaa", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifier for a species on the noaa fisheries website", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NOAA Fisheries Species Directory" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P6049" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.fisheries.noaa.gov/species-directory" + }, + "https://bioregistry.io/schema/#0000005": "long-finned-pilot-whale", + "https://bioregistry.io/schema/#0000006": "https://www.fisheries.noaa.gov/species/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\-[a-z]+)*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.fisheries.noaa.gov/species/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.fisheries.noaa.gov/species/long-finned-pilot-whale" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "noaa" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010372", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/oryzabase.reference", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Oryzabase Reference" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference" + }, + { + "@id": "https://registry.identifiers.org/registry/oryzabase.reference" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" + }, + "https://bioregistry.io/schema/#0000005": "42840", + "https://bioregistry.io/schema/#0000006": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/42840" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oryzabase.reference" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EOL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.10zsxb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/SNOMEDCT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/dlxc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DOULIX lab-tested standard biological parts, in this case, full length constructs.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/dlx" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Circular double stranded DNA sequences composed" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dlxc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://doulix.com" + }, + "https://bioregistry.io/schema/#0000005": "M77F7JM", + "https://bioregistry.io/schema/#0000006": "https://doulix.com/constructs/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{6,7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://doulix.com/constructs/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://doulix.com/constructs/M77F7JM" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dlxc" + } + }, + { + "@id": "https://orcid.org/0000-0001-7815-151X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Annika Jahnke-Bornemann" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "annika.jahnke-bornemann@uni-hamburg.de" + } + }, + { + "@id": "http://www.ontobee.org/ontology/VIDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/hoso", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "HOSO is an ontology of informational entities and processes related to healthcare organizations and services.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OpenLHS/HOSO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Healthcare Organizations and Services Ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://openlhs.github.io/HOSO/" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3336-2476" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hoso" + } + }, + { + "@id": "https://orcid.org/0000-0002-1572-1316", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Robert Druzinsky" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "druzinsk@uic.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/dpv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Description of Plant Viruses" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DPV" + }, + { + "@id": "https://registry.bio2kg.org/resource/dpvweb" + }, + { + "@id": "https://registry.identifiers.org/registry/dpv" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "classification" + }, + { + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.dpvweb.net/" + }, + "https://bioregistry.io/schema/#0000005": "100", + "https://bioregistry.io/schema/#0000006": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=100" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dpv" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/eaglei", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Discovery tool for biomedical research resources available at institutions throughout the U.S.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "eagle-i" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i" + }, + { + "@id": "https://www.re3data.org/repository/r3d100011564" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://hawaii.eagle-i.net" + }, + "https://bioregistry.io/schema/#0000005": "0000012b-5661-2f63-2f73-b43980000000", + "https://bioregistry.io/schema/#0000006": "http://hawaii.eagle-i.net/i/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://hawaii.eagle-i.net/i/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://hawaii.eagle-i.net/i/0000012b-5661-2f63-2f73-b43980000000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "eaglei" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/dron", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ecyano.experiment", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/biominder", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database of the dielectric properties of biological tissues.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bio-MINDER Tissue Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/biominder" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://datalab.rwth-aachen.de/MINDER" + }, + "https://bioregistry.io/schema/#0000005": "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3", + "https://bioregistry.io/schema/#0000006": "https://datalab.rwth-aachen.de/MINDER/resource/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9\\-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://datalab.rwth-aachen.de/MINDER/resource/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://datalab.rwth-aachen.de/MINDER/resource/aef4c195-9cf9-46db-a12a-7cfd1ff3eec3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biominder" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.p06nme", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-9136-9932", + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "Luis A. Gonzalez-Montana" + }, + { + "@value": "Luis González-Montaña" + } + ], + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "lagonzalezmo@unal.edu.co" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ECTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/niaest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000566", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4317", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/COLAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ontoavida", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/zea", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ZECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pirsf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/eupath", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VEuPathDB ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.9rhr9j" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH" + }, + { + "@id": "https://www.obofoundry.org/ontology/eupath" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath" + }, + { + "@id": "http://www.ontobee.org/ontology/EUPATH" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EUPATH" + }, + { + "@id": "http://aber-owl.net/ontology/EUPATH" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "epidemiology" + }, + { + "@value": "functional genomics" + }, + { + "@value": "ontology" + }, + { + "@value": "population genetics" + }, + { + "@value": "biomedical science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/VEuPathDB-ontology/VEuPathDB-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0010316", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EUPATH_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/eupath.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2999-0103" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EUPATH_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/EUPATH_0010316" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "eupath" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/prefixcc", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A web-developer centric archive of prefixes and URI prefixes" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Prefix.cc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://prefix.cc/" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "foaf" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://prefix.cc/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9950-5209" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pdb-ccd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2326", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/genatlas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/xmetdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Metabolites in the Xenobiotics Metabolism Database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Xenobiotics Metabolism Database" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://xmetdb.org" + }, + "https://bioregistry.io/schema/#0000005": "171", + "https://bioregistry.io/schema/#0000006": "http://www.xmetdb.org/xmetdb/protocol/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://www.xmetdb.org/xmetdb/protocol/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.xmetdb.org/xmetdb/protocol/171" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "xmetdb" + } + }, + { + "@id": "http://aber-owl.net/ontology/EPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.eqgjeq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bto", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BRENDA-Enzymes/BTO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BRENDA Tissue Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.1414v8" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO" + }, + { + "@id": "https://registry.identifiers.org/registry/bto" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto" + }, + { + "@id": "https://www.obofoundry.org/ontology/bto" + }, + { + "@id": "https://registry.bio2kg.org/resource/bto" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BTO" + }, + { + "@id": "http://aber-owl.net/ontology/BTO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BTO" + }, + { + "@id": "http://www.ontobee.org/ontology/BTO" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO" + }, + { + "@id": "http://www.wikidata.org/entity/P5501" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "tissue" + }, + { + "@value": "enzymology" + }, + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.brenda-enzymes.org" + }, + "https://bioregistry.io/schema/#0000005": "0000590", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/bto.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9117-7909" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "BTO" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BTO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/BTO_0000590" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bto" + } + }, + { + "@id": "https://registry.identifiers.org/registry/exac.transcript", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b549b8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.s3r6sk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100013293", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/mpid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Microbial Protein Interaction Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MPID" + }, + { + "@id": "https://registry.identifiers.org/registry/mpid" + }, + { + "@id": "https://registry.bio2kg.org/resource/mpi" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.eyjkws" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "life science" + }, + { + "@value": "interaction" + }, + { + "@value": "small molecule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.jcvi.org/mpidb/about.php" + }, + "https://bioregistry.io/schema/#0000005": "172", + "https://bioregistry.io/schema/#0000006": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "mpidb" + }, + "https://bioregistry.io/schema/#0000024": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.jcvi.org/mpidb/experiment.php?interaction_id=172" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mpid" + } + }, + { + "@id": "https://bioregistry.io/registry/biomodels.teddy", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Terminology for Description of Dynamics" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY" + }, + { + "@id": "http://aber-owl.net/ontology/TEDDY" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TEDDY" + }, + { + "@id": "https://registry.identifiers.org/registry/biomodels.teddy" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w9jvbt" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy" + }, + { + "@id": "https://registry.bio2kg.org/resource/teddy" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "synthetic biology" + }, + { + "@value": "neurophysiology" + }, + { + "@value": "systems biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://teddyontology.sourceforge.net/" + }, + "https://bioregistry.io/schema/#0000005": "0000066", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://svn.code.sf.net/p/teddyontology/code/teddy/tags/current/teddy-inferred.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nbeca5cf2048d406d84b6c71368a16938" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "teddy" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_0000066" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biomodels.teddy" + } + }, + { + "@id": "_:Nbeca5cf2048d406d84b6c71368a16938", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioModels.net team" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "biomodels-net-support@lists.sf.net" + } + }, + { + "@id": "https://bioregistry.io/registry/plo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plasmodium Life Cycle" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/plo" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PLO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sanger.ac.uk/Users/mb4/PLO/" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLO_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N3aa07d85853c46a082ac4d2fe6ca36d9" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "plo" + } + }, + { + "@id": "_:N3aa07d85853c46a082ac4d2fe6ca36d9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Matt Berriman" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mb4@sanger.ac.uk" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.ontobee.org/ontology/BCGO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.205", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/spdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bv0zjz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/licebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/SIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/homologene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HomoloGene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.mzc066" + }, + { + "@id": "https://registry.bio2kg.org/resource/homologene" + }, + { + "@id": "https://registry.identifiers.org/registry/homologene" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene" + }, + { + "@id": "http://www.wikidata.org/entity/P593" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "gene" + }, + { + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/homologene/" + }, + "https://bioregistry.io/schema/#0000005": "1000", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/homologene/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/homologene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/homologene/1000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "homologene" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4866", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3ngg40", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/snctp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Swiss National Clinical Trials Portal" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://kofam.ch/en/snctp-portal" + }, + "https://bioregistry.io/schema/#0000005": "SNCTP000005580", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "snctp" + } + }, + { + "@id": "http://aber-owl.net/ontology/LABO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1554", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://aber-owl.net/ontology/OHPI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/bold.taxonomy", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BOLD Systems taxon" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BOLD.TAXONOMY" + }, + { + "@id": "https://registry.bio2kg.org/resource/bold" + }, + { + "@id": "https://registry.identifiers.org/registry/bold.taxonomy" + }, + { + "@id": "http://www.wikidata.org/entity/P3606" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "dna" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.boldsystems.org/" + }, + "https://bioregistry.io/schema/#0000005": "27267", + "https://bioregistry.io/schema/#0000006": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=27267" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bold.taxonomy" + } + }, + { + "@id": "https://bioregistry.io/registry/depmap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DepMap Cell Lines" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://depmap.org/portal" + }, + "https://bioregistry.io/schema/#0000005": "ACH-000001", + "https://bioregistry.io/schema/#0000006": "https://depmap.org/portal/cell_line/$1", + "https://bioregistry.io/schema/#0000008": "^ACH-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://depmap.org/portal/cell_line/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://depmap.org/portal/cell_line/ACH-000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "depmap" + } + }, + { + "@id": "https://orcid.org/0000-0002-7805-0660", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lorenz Reimer" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "contact@bacdive.de" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c7f365", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ea287c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/nlx.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXCELL conatins cell types with a focus on neuron types.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Cell Types" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "cell types" + }, + { + "@value": "neuroscience" + }, + { + "@value": "cells" + }, + { + "@value": "cell lines" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "91005", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXCELL" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_cell_91005" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.cell" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sider.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/zfs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Developmental stages of the Zebrafish", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/cerivs/zebrafish-anatomical-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Zebrafish developmental stages ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bc8ayj" + }, + { + "@id": "http://aber-owl.net/ontology/ZFS" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ZFS" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs" + }, + { + "@id": "https://www.obofoundry.org/ontology/zfs" + }, + { + "@id": "http://www.ontobee.org/ontology/ZFS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "developmental biology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "marine biology" + }, + { + "@value": "zoology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" + }, + "https://bioregistry.io/schema/#0000005": "0000050", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZFS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/zfs.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2244-7917" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZFS_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ZFS_0000050" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "zfs" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.0b7e54", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/jcrb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "JRBC Cell Bank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cellbank.nibiohn.go.jp" + }, + "https://bioregistry.io/schema/#0000005": "JCRB1355", + "https://bioregistry.io/schema/#0000006": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1", + "https://bioregistry.io/schema/#0000008": "^JCRB\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=JCRB1355" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "jcrb" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/maxo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/foodex2", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FoodEx2 is a comprehensive food classification and description system aimed at covering the need to describe food in data collections across different food safety domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Food Classification and Description System" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.efsa.europa.eu/" + }, + "https://bioregistry.io/schema/#0000005": "A0TMC", + "https://bioregistry.io/schema/#0000006": "http://data.food.gov.uk/codes/foodtype/id/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nbf9b965aeb1945c0929cabc018829bf8" + }, + "https://bioregistry.io/schema/#0000024": "http://data.food.gov.uk/codes/foodtype/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://data.food.gov.uk/codes/foodtype/id/A0TMC" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "foodex2" + } + }, + { + "@id": "_:Nbf9b965aeb1945c0929cabc018829bf8", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "European Food Safety Authority" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "datex@efsa.europa.eu" + } + }, + { + "@id": "https://bioregistry.io/registry/otol", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifier for an entity in open tree of life", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Open Tree of Life" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P9157" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://tree.opentreeoflife.org" + }, + "https://bioregistry.io/schema/#0000005": "3905431", + "https://bioregistry.io/schema/#0000006": "https://tree.opentreeoflife.org/taxonomy/browse?id=$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://tree.opentreeoflife.org/taxonomy/browse?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://tree.opentreeoflife.org/taxonomy/browse?id=3905431" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "otol" + } + }, + { + "@id": "https://bioregistry.io/registry/hpm.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Proteome Map" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN" + }, + { + "@id": "https://registry.identifiers.org/registry/hpm.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HPM" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.humanproteomemap.org/index.php" + }, + "https://bioregistry.io/schema/#0000005": "1968", + "https://bioregistry.io/schema/#0000006": "http://www.humanproteomemap.org/protein.php?hpm_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.humanproteomemap.org/protein.php?hpm_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.humanproteomemap.org/protein.php?hpm_id=1968" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hpm.protein" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/yid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yeast Intron Database v3" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YID" + }, + { + "@id": "https://registry.identifiers.org/registry/yid" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://compbio.soe.ucsc.edu/yeast_introns.html" + }, + "https://bioregistry.io/schema/#0000005": "SNR17A", + "https://bioregistry.io/schema/#0000006": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=SNR17A" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "yid" + } + }, + { + "@id": "https://orcid.org/0000-0003-1346-1327", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Brian Aevermann" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "baeverma@jcvi.org" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ocid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/registry/ontie", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/IEDB/ONTIE" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for Immune Epitopes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.kx2md1" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "immunology" + }, + { + "@value": "ontology" + }, + { + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ontology.iedb.org/" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "https://ontology.iedb.org/ontology/ONTIE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/IEDB/ONTIE/master/ontie.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8457-6693" + }, + "https://bioregistry.io/schema/#0000024": "https://ontology.iedb.org/ontology/ONTIE_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ontology.iedb.org/ontology/ONTIE_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ontie" + } + }, + { + "@id": "https://bartoc.org/en/node/20430", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mirnao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012630", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/AFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/rnamods", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/htn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ZP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0187", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6tgyxf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ligandbox", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LigandBox" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX" + }, + { + "@id": "https://registry.identifiers.org/registry/ligandbox" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mypresto5.com/ligandbox/cgi-bin/index.cgi?LANG=en" + }, + "https://bioregistry.io/schema/#0000005": "D00001", + "https://bioregistry.io/schema/#0000006": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1", + "https://bioregistry.io/schema/#0000008": "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=D00001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ligandbox" + } + }, + { + "@id": "http://aber-owl.net/ontology/PROCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ico", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ICO-ontology/ICO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Informed Consent Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/ICO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ICO" + }, + { + "@id": "http://www.ontobee.org/ontology/ICO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b9znd5" + }, + { + "@id": "https://www.obofoundry.org/ontology/ico" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "medicine" + }, + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "clinical studies" + }, + { + "@value": "obo" + }, + { + "@value": "health science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/ICO-ontology/ICO" + }, + "https://bioregistry.io/schema/#0000005": "0000066", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ICO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ico.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ICO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ICO_0000066" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ico" + } + }, + { + "@id": "https://registry.identifiers.org/registry/yeastintron", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/prints", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PRINTS compendium of protein fingerprints" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.uniprot.org/database/DB-0082" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS" + }, + { + "@id": "https://registry.identifiers.org/registry/prints" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS" + }, + { + "@id": "https://registry.bio2kg.org/resource/sprint" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.h8r843" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structural biology" + }, + { + "@value": "biology" + }, + { + "@value": "domain" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/" + }, + "https://bioregistry.io/schema/#0000005": "PR00001", + "https://bioregistry.io/schema/#0000006": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off", + "https://bioregistry.io/schema/#0000008": "^PR\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "sprint" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/prints:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=PR00001&display_opts=Prints&category=None&queryform=false®expr=off" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "prints" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.m40bhw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-9472-2589", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Karel Berka" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "karel.berka@upol.cz" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/otl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Oryza Tag Line" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.61c2x6" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OTL" + }, + { + "@id": "https://registry.bio2kg.org/resource/otl" + }, + { + "@id": "https://registry.identifiers.org/registry/otl" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://oryzatagline.cirad.fr/" + }, + "https://bioregistry.io/schema/#0000005": "AADB12", + "https://bioregistry.io/schema/#0000006": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1", + "https://bioregistry.io/schema/#0000008": "^A[A-Z]+\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=AADB12" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "otl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0003-4312-9552", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Daniel C. Berrios" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "daniel.c.berrios@nasa.gov" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-3012-7446", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/openalex" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Daniel Himmelstein" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0003-2836-3463", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Laurent Duret" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "duret@biomserv.univ-lyon1.fr" + } + }, + { + "@id": "https://bioregistry.io/registry/icd10pcs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Classification of Diseases, 10th Revision, Procedure Coding System" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P1690" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.85k1jm" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS" + }, + { + "@id": "http://aber-owl.net/ontology/ICD10PCS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "epidemiology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "health science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS" + }, + "https://bioregistry.io/schema/#0000005": "01N50ZZ", + "https://bioregistry.io/schema/#0000006": "https://www.findacode.com/code.php?set=ICD10PCS&c=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N22f04e226201488a9f275ba78ac9c56b" + }, + "https://bioregistry.io/schema/#0000024": "https://www.findacode.com/code.php?set=ICD10PCS&c=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.findacode.com/code.php?set=ICD10PCS&c=01N50ZZ" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "icd10pcs" + } + }, + { + "@id": "_:N22f04e226201488a9f275ba78ac9c56b", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pat Brooks" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "patricia.brooks2@cms.hhs.gov" + } + }, + { + "@id": "https://registry.identifiers.org/registry/wb.rnai", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "http://www.wikidata.org/entity/P830", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://www.wikidata.org/entity/P663", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.k893xa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/biosimulators", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/biosimulators/Biosimulators/issues/new/choose" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioSimulators" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/biosimulators" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pwEima" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013432" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "computational biology" }, { - "@id": "https://registry.identifiers.org/registry/genprop" + "@value": "systems biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://biosimulators.org/" + }, + "https://bioregistry.io/schema/#0000005": "vcell", + "https://bioregistry.io/schema/#0000006": "https://biosimulators.org/simulators/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2605-5080" + }, + "https://bioregistry.io/schema/#0000024": "https://biosimulators.org/simulators/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biosimulators.org/simulators/vcell" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biosimulators" + } + }, + { + "@id": "https://registry.identifiers.org/registry/jstor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/miriam", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/miriam.collection" }, { - "@id": "https://registry.identifiers.org/registry/pride" + "@id": "https://bioregistry.io/registry/miriam.resource" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Identifiers.org namespace" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://edamontology.org/data_1162" }, { - "@id": "https://registry.identifiers.org/registry/wb" + "@id": "https://fairsharing.org/FAIRsharing.ap169a" }, { - "@id": "https://registry.identifiers.org/registry/icd" + "@id": "https://registry.identifiers.org/registry/identifiers.namespace" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/ro" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/vario" + "@value": "biochemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk" + }, + "https://bioregistry.io/schema/#0000005": "pubmed", + "https://bioregistry.io/schema/#0000006": "https://registry.identifiers.org/registry/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-z_:\\.-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6309-7327" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "identifiers.namespace" + }, + "https://bioregistry.io/schema/#0000024": "https://registry.identifiers.org/registry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://registry.identifiers.org/registry/pubmed" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/protcom", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAmods", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/transyt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LICEBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j9y503", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/trichdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TrichDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100012461" }, { - "@id": "https://registry.identifiers.org/registry/jws" + "@id": "https://registry.identifiers.org/registry/trichdb" }, { - "@id": "https://registry.identifiers.org/registry/grsdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB" }, { - "@id": "https://registry.identifiers.org/registry/kegg" + "@id": "https://fairsharing.org/FAIRsharing.pv0ezt" }, { - "@id": "https://registry.identifiers.org/registry/corum" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genomics" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://trichdb.org/trichdb/" + }, + "https://bioregistry.io/schema/#0000005": "TVAG_386080", + "https://bioregistry.io/schema/#0000006": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4446-6200" + }, + "https://bioregistry.io/schema/#0000024": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TVAG_386080" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "trichdb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_334", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ECSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hpm.peptide", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/hathitrust", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hathi Trust Digital Library" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.hathitrust.org" + }, + "https://bioregistry.io/schema/#0000005": "008893080", + "https://bioregistry.io/schema/#0000006": "https://catalog.hathitrust.org/Record/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://catalog.hathitrust.org/Record/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://catalog.hathitrust.org/Record/008893080" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hathitrust" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/gold", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010670", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mya1ff", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-1058-2668", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Danielle Welter" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dwelter.ontologist@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/millipore", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Merck Millipore (EMD Millipore)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.merckmillipore.com/" + }, + "https://bioregistry.io/schema/#0000005": "SCC111", + "https://bioregistry.io/schema/#0000006": "https://www.merckmillipore.com/catalogue/item/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.merckmillipore.com/catalogue/item/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.merckmillipore.com/catalogue/item/SCC111" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "millipore" + } + }, + { + "@id": "https://registry.identifiers.org/registry/drugbankv4.target", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_323", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f73xhd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/wikidata.property", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. ", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://registry.identifiers.org/registry/tair.gene" + "@id": "https://bioregistry.io/registry/wikidata" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wikidata Property" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY" }, { - "@id": "https://registry.identifiers.org/registry/biokc" + "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.wikidata.org" + }, + "https://bioregistry.io/schema/#0000005": "P4355", + "https://bioregistry.io/schema/#0000006": "https://www.wikidata.org/wiki/Property:$1", + "https://bioregistry.io/schema/#0000008": "^P\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.wikidata.org/wiki/Property:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.wikidata.org/wiki/Property:P4355" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wikidata.property" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/imr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Molecule role (INOH Protein name/family name ontology)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMR" }, { - "@id": "https://registry.identifiers.org/registry/drsc" + "@id": "https://www.obofoundry.org/ontology/imr" }, { - "@id": "https://registry.identifiers.org/registry/abs" + "@id": "https://registry.bio2kg.org/resource/imr" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/ror" + "@value": "small molecule" }, { - "@id": "https://registry.identifiers.org/registry/cellosaurus" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/vcell" + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.inoh.org" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N609943db95f64f818021f2747975301e" + }, + "https://bioregistry.io/schema/#0000024": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "imr" + } + }, + { + "@id": "_:N609943db95f64f818021f2747975301e", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "INOH curators" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "curator@inoh.org" + } + }, + { + "@id": "https://bioregistry.io/registry/datf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Arabidopsis Transcription Factors" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/datf" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.mutant" + "@id": "https://registry.bio2kg.org/resource/datf" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf" }, { - "@id": "https://registry.identifiers.org/registry/orphanet" + "@id": "https://bioregistry.io/metaregistry/biocontext/DATF" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "regulation" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://datf.cbi.pku.edu.cn/" + }, + "https://bioregistry.io/schema/#0000005": "AT1G01030.1", + "https://bioregistry.io/schema/#0000006": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1", + "https://bioregistry.io/schema/#0000008": "^AT[1-5]G\\d{5}(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=AT1G01030.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "datf" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000010", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "A download link for the given resource" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has download URL" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010880", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/odam", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Open Data for Access and Mining" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/odam" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://metabolome.cgfb.u-bordeaux.fr/" + }, + "https://bioregistry.io/schema/#0000005": "frim1", + "https://bioregistry.io/schema/#0000006": "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/odam:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pmb-bordeaux.fr/getdata/json/frim1/datapackage?links=1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "odam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/omid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/cog", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/cog.category" }, { - "@id": "https://registry.identifiers.org/registry/oridb.sacch" + "@id": "https://bioregistry.io/registry/cog.pathway" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cluster of orthologous genes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/cog" }, { - "@id": "https://registry.identifiers.org/registry/bionumbers" + "@id": "https://registry.identifiers.org/registry/cog" }, { - "@id": "https://registry.identifiers.org/registry/door" + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster" }, { - "@id": "https://registry.identifiers.org/registry/clo" + "@id": "https://fairsharing.org/FAIRsharing.djsbw2" }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genome" }, { - "@id": "https://registry.identifiers.org/registry/iceberg.element" + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/fplx" + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/" + }, + "https://bioregistry.io/schema/#0000005": "COG0001", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/research/cog/cog/$1", + "https://bioregistry.io/schema/#0000008": "^COG\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2265-5572" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "COG_Cluster" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/research/cog/cog/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/research/cog/cog/COG0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cog" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1693", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010798", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/swrl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SWRL enables Horn-like rules to be combined with an OWL knowledge base.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "A Semantic Web Rule Language Combining OWL and RuleML" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.w3.org/2003/11/swrl#" + }, + "https://bioregistry.io/schema/#0000005": "Variable", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2003/11/swrl#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2003/11/swrl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/2003/11/swrl#Variable" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "swrl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sedml.language", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/foodb.food", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Foods in FooDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FooDB Food" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://foodb.ca/foods" + }, + "https://bioregistry.io/schema/#0000005": "FOOD00020", + "https://bioregistry.io/schema/#0000006": "https://foodb.ca/foods/$1", + "https://bioregistry.io/schema/#0000008": "^FOOD\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://foodb.ca/foods/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://foodb.ca/foods/FOOD00020" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "foodb.food" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0152", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OPB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/bdgp.insertion", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BDGP insertion DB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion" + }, + { + "@id": "https://registry.bio2kg.org/resource/bdgp" + }, + { + "@id": "https://registry.identifiers.org/registry/bdgp.insertion" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "sequence" + }, + { + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://flypush.imgen.bcm.tmc.edu/pscreen/" + }, + "https://bioregistry.io/schema/#0000005": "KG09531", + "https://bioregistry.io/schema/#0000006": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=KG09531" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bdgp.insertion" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/APD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/KISAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/resid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Protein covalent bond" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RESID" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID" + }, + { + "@id": "https://www.obofoundry.org/ontology/resid" + }, + { + "@id": "https://registry.identifiers.org/registry/resid" + }, + { + "@id": "https://registry.bio2kg.org/resource/resid" + }, + { + "@id": "http://edamontology.org/data_2619" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "structure" + }, + { + "@value": "small molecule" + }, + { + "@value": "protein" + }, + { + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://proteininformationresource.org/resid/" + }, + "https://bioregistry.io/schema/#0000005": "AA0001", + "https://bioregistry.io/schema/#0000006": "https://proteininformationresource.org/cgi-bin/resid?id=$1", + "https://bioregistry.io/schema/#0000008": "^AA\\d{4}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4131-735X" + }, + "https://bioregistry.io/schema/#0000024": "https://proteininformationresource.org/cgi-bin/resid?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://proteininformationresource.org/cgi-bin/resid?id=AA0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "resid" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ccdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_356", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/registry/genecards", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GeneCards" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.uniprot.org/database/DB-0030" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g7jbvn" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS" + }, + { + "@id": "https://registry.bio2kg.org/resource/genecards" }, { "@id": "https://registry.identifiers.org/registry/genecards" }, { - "@id": "https://registry.identifiers.org/registry/prodom" + "@id": "https://www.re3data.org/repository/r3d100012015" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.yeast" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genetics" + }, + { + "@value": "transcriptomics" + }, + { + "@value": "life science" + }, + { + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genecards.org/" + }, + "https://bioregistry.io/schema/#0000005": "ABL1", + "https://bioregistry.io/schema/#0000006": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9_]+(\\@)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5424-1393" + }, + "https://bioregistry.io/schema/#0000024": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ABL1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genecards" + } + }, + { + "@id": "https://bioregistry.io/registry/gainesville.core", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gainesville Core Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ontologies.makolab.com/gc06/gc.html" + }, + "https://bioregistry.io/schema/#0000005": "Aromatic", + "https://bioregistry.io/schema/#0000006": "http://purl.org/gc/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://ontologies.makolab.com/gc06/gc.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://purl.org/gc/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/gc/Aromatic" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gainesville.core" + } + }, + { + "@id": "http://www.ontobee.org/ontology/REX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://orcid.org/0000-0002-8310-5195", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pierre-Yves LeBail" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pylebail@rennes.inra.fr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Cells", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000024", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has URI prefix" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ + { + "@id": "http://purl.org/vocab/vann/preferredNamespaceUri" + }, + { + "@id": "http://rdfs.org/ns/void#uriSpace" + }, + { + "@id": "http://www.w3.org/ns/shacl#namespace" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/fairsharing", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/fairsharing.organization" + }, + { + "@id": "https://bioregistry.io/registry/srao" + }, + { + "@id": "https://bioregistry.io/registry/fairsharing.user" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/FAIRsharing" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FAIRsharing" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing" + }, + { + "@id": "https://registry.identifiers.org/registry/fairsharing" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2abjs5" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010142" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.study" + "@value": "environmental science" }, { - "@id": "https://registry.identifiers.org/registry/mim" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/ydpm" + "@value": "agriculture" }, { - "@id": "https://registry.identifiers.org/registry/multicellds.cell_line" + "@value": "humanities" }, { - "@id": "https://registry.identifiers.org/registry/pubmed" + "@value": "natural science" }, { - "@id": "https://registry.identifiers.org/registry/napp" + "@value": "database management" }, { - "@id": "https://registry.identifiers.org/registry/intact.molecule" + "@value": "ontology and terminology" }, { - "@id": "https://registry.identifiers.org/registry/exac.transcript" + "@value": "data governance" }, { - "@id": "https://registry.identifiers.org/registry/vfdb.gene" + "@value": "earth science" }, { - "@id": "https://registry.identifiers.org/registry/biosample" - }, + "@value": "policy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fairsharing.org/" + }, + "https://bioregistry.io/schema/#0000005": "bsg-000052", + "https://bioregistry.io/schema/#0000006": "https://fairsharing.org/$1", + "https://bioregistry.io/schema/#0000008": "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7702-4495" + }, + "https://bioregistry.io/schema/#0000024": "https://fairsharing.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://fairsharing.org/bsg-000052" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/splicenest", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SpliceNest" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/splicenest" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/nbrc" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/ecyano.model" + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/beetlebase" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://splicenest.molgen.mpg.de/" + }, + "https://bioregistry.io/schema/#0000005": "Hs635", + "https://bioregistry.io/schema/#0000006": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=Hs635" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "splicenest" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9vtwjs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/isni", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Standard Name Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/genedb" + "@id": "https://registry.identifiers.org/registry/isni" }, { - "@id": "https://registry.identifiers.org/registry/rapdb.locus" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni" }, { - "@id": "https://registry.identifiers.org/registry/bindingdb" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.isni.org" + }, + "https://bioregistry.io/schema/#0000005": "000000012281955X", + "https://bioregistry.io/schema/#0000006": "http://www.isni.org/isni/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{15}[0-9X]{1}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.isni.org/isni/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.isni.org/isni/000000012281955X" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "isni" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/jcvi.genprop", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NANDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/mirte", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "miRNA Target Prediction at EMBL" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.russelllab.org/miRNAs/" + }, + "https://bioregistry.io/schema/#0000005": "miR-1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "mirte" + } + }, + { + "@id": "https://bioregistry.io/registry/civic.aid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/gudmap" + "@id": "https://bioregistry.io/registry/civic" }, { - "@id": "https://registry.identifiers.org/registry/complexportal" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC Assertion" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/civic.aid" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "3", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/assertions/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/assertions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://civicdb.org/links/assertions/3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "civic.aid" + } + }, + { + "@id": "https://bioregistry.io/registry/chembl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.identifiers.org/registry/minid.test" + "@id": "https://bioregistry.io/registry/chembl.target" }, { - "@id": "https://registry.identifiers.org/registry/lgai.cede" + "@id": "https://bioregistry.io/registry/chembl.compound" }, { - "@id": "https://registry.identifiers.org/registry/ndc" - }, + "@id": "https://bioregistry.io/registry/chembl.cell" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/chembl/GLaDOS" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ChEMBL" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/microsporidia" + "@id": "https://www.uniprot.org/database/DB-0174" }, { - "@id": "https://registry.identifiers.org/registry/iuphar.receptor" + "@id": "https://registry.bio2kg.org/resource/chembl" }, { - "@id": "https://registry.identifiers.org/registry/goa" + "@id": "https://registry.identifiers.org/registry/chembl" }, { - "@id": "https://registry.identifiers.org/registry/odor" + "@id": "https://semanticscience.org/resource/CHEMINF_000412" }, { - "@id": "https://registry.identifiers.org/registry/erm" + "@id": "https://www.re3data.org/repository/r3d100010539" }, { - "@id": "https://registry.identifiers.org/registry/ecogene" - }, + "@id": "https://fairsharing.org/FAIRsharing.m3jtpg" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/csa" + "@value": "medicinal chemistry" }, { - "@id": "https://registry.identifiers.org/registry/oma.grp" + "@value": "drug discovery" }, { - "@id": "https://registry.identifiers.org/registry/wikidata" + "@value": "molecules" }, { - "@id": "https://registry.identifiers.org/registry/eu89h" + "@value": "biochemistry" }, { - "@id": "https://registry.identifiers.org/registry/linguist" + "@value": "genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/chembl" + }, + "https://bioregistry.io/schema/#0000005": "CHEMBL4303805", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/entity/$1", + "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0294-5484" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "chembl" }, { - "@id": "https://registry.identifiers.org/registry/spp" + "@value": "ChEMBL" }, { - "@id": "https://registry.identifiers.org/registry/vectorbase" + "@value": "ChEMBL_ID" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/entity/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/chembl/entity/CHEMBL4303805" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "chembl" + } + }, + { + "@id": "https://bioregistry.io/registry/metatlas", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/metatlas.metabolite" }, { - "@id": "https://registry.identifiers.org/registry/fsnp" + "@id": "https://bioregistry.io/registry/metatlas.reaction" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Metabolic Atlas" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/metatlas" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "metabolites" }, { - "@id": "https://registry.identifiers.org/registry/civic.vid" + "@value": "chemistry" }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype" + "@value": "reactions" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://metabolicatlas.org" + }, + "https://bioregistry.io/schema/#0000005": "MAM01234c", + "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", + "https://bioregistry.io/schema/#0000008": "^(MAM\\d{5}\\w)|(MAR\\d{5})$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7753-9042" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAM01234c" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metatlas" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.eeyne8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ntyq70", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010421", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EC-CODE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rbk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2q8c28", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/gabi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Network of Different Plant Genomic Research Projects" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GABI" }, { - "@id": "https://registry.identifiers.org/registry/inchi" + "@id": "https://registry.identifiers.org/registry/gabi" }, { - "@id": "https://registry.identifiers.org/registry/iceberg.family" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI" }, { - "@id": "https://registry.identifiers.org/registry/cldb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi" }, { - "@id": "https://registry.identifiers.org/registry/modeldb" + "@id": "https://registry.bio2kg.org/resource/gabi" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/civic.gid" + "@value": "genome" }, { - "@id": "https://registry.identifiers.org/registry/gramene.protein" + "@value": "plant" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.gabipd.org/" + }, + "https://bioregistry.io/schema/#0000005": "2679240", + "https://bioregistry.io/schema/#0000006": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gabi:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=2679240&Mode=ShowBioObject" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gabi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://registry.identifiers.org/registry/inchikey", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WormBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010912", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012928", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/hancestro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Human ancestry ontology for the NHGRI GWAS Catalog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/ancestro" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Ancestry Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.ontobee.org/ontology/HANCESTRO" }, { - "@id": "https://registry.identifiers.org/registry/sider.drug" + "@id": "http://aber-owl.net/ontology/HANCESTRO" }, { - "@id": "https://registry.identifiers.org/registry/wormpep" + "@id": "https://www.obofoundry.org/ontology/hancestro" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna" + "@id": "https://fairsharing.org/FAIRsharing.rja8qp" }, { - "@id": "https://registry.identifiers.org/registry/nextdb" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO" }, { - "@id": "https://registry.identifiers.org/registry/omit" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro" }, { - "@id": "https://registry.identifiers.org/registry/mirnest" + "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "population genetics" }, { - "@id": "https://registry.identifiers.org/registry/chemspider" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/glycopost" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/yeastintron" + "@value": "human genetics" }, { - "@id": "https://registry.identifiers.org/registry/maizegdb.locus" + "@value": "demographics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ebispot.github.io/hancestro/" + }, + "https://bioregistry.io/schema/#0000005": "0290", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HANCESTRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hancestro.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1058-2668" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HANCESTRO_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/HANCESTRO_0290" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hancestro" + } + }, + { + "@id": "http://aber-owl.net/ontology/BSPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPEDIA.EN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/cl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/cell-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://agroportal.lirmm.fr/ontologies/CL" }, { - "@id": "https://registry.identifiers.org/registry/swiss-model" + "@id": "http://aber-owl.net/ontology/CL" }, { - "@id": "https://registry.identifiers.org/registry/nucleotide" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CL" }, { - "@id": "https://registry.identifiers.org/registry/sgd.pathways" + "@id": "http://www.ontobee.org/ontology/CL" }, { - "@id": "https://registry.identifiers.org/registry/opm" + "@id": "https://bioregistry.io/metaregistry/biocontext/CL" }, { - "@id": "https://registry.identifiers.org/registry/funderregistry" + "@id": "http://www.wikidata.org/entity/P7963" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.strain" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl" }, { - "@id": "https://registry.identifiers.org/registry/unite" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL" }, { - "@id": "https://registry.identifiers.org/registry/classyfire" + "@id": "https://registry.identifiers.org/registry/cl" }, { - "@id": "https://registry.identifiers.org/registry/atc" + "@id": "https://www.obofoundry.org/ontology/cl" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.compound" + "@id": "https://registry.bio2kg.org/resource/cl" }, { - "@id": "https://registry.identifiers.org/registry/vmhmetabolite" + "@id": "https://bioportal.bioontology.org/ontologies/CL" }, { - "@id": "https://registry.identifiers.org/registry/spike.map" + "@id": "https://fairsharing.org/FAIRsharing.j9y503" }, { - "@id": "https://registry.identifiers.org/registry/genatlas" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/covid19" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/drugbank" + "@value": "anatomy" }, { - "@id": "https://registry.identifiers.org/registry/github" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/myco.smeg" + "@value": "cell biology" }, { - "@id": "https://registry.identifiers.org/registry/meddra" + "@value": "cell" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://obophenotype.github.io/cell-ontology/" + }, + "https://bioregistry.io/schema/#0000005": "0000062", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cl.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/pato" }, { - "@id": "https://registry.identifiers.org/registry/pubchem.substance" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://registry.identifiers.org/registry/datf" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@id": "https://registry.identifiers.org/registry/bitterdb.rec" + "@id": "https://bioregistry.io/registry/pr" }, { - "@id": "https://registry.identifiers.org/registry/ccdc" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://registry.identifiers.org/registry/neuromorpho" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://registry.identifiers.org/registry/ardb" + "@id": "https://bioregistry.io/registry/chebi" + } + ], + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/xpo" }, { - "@id": "https://registry.identifiers.org/registry/macie" + "@id": "https://bioregistry.io/registry/ecao" }, { - "@id": "https://registry.identifiers.org/registry/oma.protein" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://registry.identifiers.org/registry/trichdb" + "@id": "https://bioregistry.io/registry/clo" }, { - "@id": "https://registry.identifiers.org/registry/agricola" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://registry.identifiers.org/registry/vfb" + "@id": "https://bioregistry.io/registry/mco" }, { - "@id": "https://registry.identifiers.org/registry/neurondb" + "@id": "https://bioregistry.io/registry/ehdaa2" }, { - "@id": "https://registry.identifiers.org/registry/proglyc" + "@id": "https://bioregistry.io/registry/go" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9990-8331" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CL_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CL_0000062" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/gendis", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ontobee", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "http://www.ontobee.org/ontology/FBcv" }, { - "@id": "https://registry.identifiers.org/registry/bold.taxonomy" + "@id": "http://www.ontobee.org/ontology/MOD" }, { - "@id": "https://registry.identifiers.org/registry/cgsc" + "@id": "http://www.ontobee.org/ontology/UO" }, { - "@id": "https://registry.identifiers.org/registry/ubio.namebank" + "@id": "http://www.ontobee.org/ontology/SPD" }, { - "@id": "https://registry.identifiers.org/registry/envipath" + "@id": "http://www.ontobee.org/ontology/SO" }, { - "@id": "https://registry.identifiers.org/registry/gxa.gene" + "@id": "http://www.ontobee.org/ontology/ERO" }, { - "@id": "https://registry.identifiers.org/registry/doi" + "@id": "http://www.ontobee.org/ontology/EHDAA2" }, { - "@id": "https://registry.identifiers.org/registry/seed.reaction" + "@id": "http://www.ontobee.org/ontology/SEP" }, { - "@id": "https://registry.identifiers.org/registry/ps" + "@id": "http://www.ontobee.org/ontology/PDRO" }, { - "@id": "https://registry.identifiers.org/registry/nemo" + "@id": "http://www.ontobee.org/ontology/PR" }, { - "@id": "https://registry.identifiers.org/registry/ctd.chemical" + "@id": "http://www.ontobee.org/ontology/OBI" }, { - "@id": "https://registry.identifiers.org/registry/homologene" + "@id": "http://www.ontobee.org/ontology/ICO" }, { - "@id": "https://registry.identifiers.org/registry/peroxibase" + "@id": "http://www.ontobee.org/ontology/NOMEN" }, { - "@id": "https://registry.identifiers.org/registry/empiar" + "@id": "http://www.ontobee.org/ontology/EUPATH" }, { - "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" + "@id": "http://www.ontobee.org/ontology/CHIRO" }, { - "@id": "https://registry.identifiers.org/registry/glycoepitope" + "@id": "http://www.ontobee.org/ontology/DRON" }, { - "@id": "https://registry.identifiers.org/registry/mmp.cat" + "@id": "http://www.ontobee.org/ontology/MP" }, { - "@id": "https://registry.identifiers.org/registry/mamo" + "@id": "http://www.ontobee.org/ontology/DISDRIV" }, { - "@id": "https://registry.identifiers.org/registry/biostudies" + "@id": "http://www.ontobee.org/ontology/IDOMAL" }, { - "@id": "https://registry.identifiers.org/registry/huge" + "@id": "http://www.ontobee.org/ontology/MCO" }, { - "@id": "https://registry.identifiers.org/registry/topdb" + "@id": "http://www.ontobee.org/ontology/DDANAT" }, { - "@id": "https://registry.identifiers.org/registry/aceview.worm" + "@id": "http://www.ontobee.org/ontology/GNO" }, { - "@id": "https://registry.identifiers.org/registry/ms" + "@id": "http://www.ontobee.org/ontology/FBbi" }, { - "@id": "https://registry.identifiers.org/registry/did" + "@id": "http://www.ontobee.org/ontology/ECOCORE" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.protist" + "@id": "http://www.ontobee.org/ontology/OGMS" }, { - "@id": "https://registry.identifiers.org/registry/gnd" + "@id": "http://www.ontobee.org/ontology/MFOEM" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.mouse" + "@id": "http://www.ontobee.org/ontology/LABO" }, { - "@id": "https://registry.identifiers.org/registry/cdd" + "@id": "http://www.ontobee.org/ontology/COLAO" }, { - "@id": "https://registry.identifiers.org/registry/splash" + "@id": "http://www.ontobee.org/ontology/REO" }, { - "@id": "https://registry.identifiers.org/registry/jstor" + "@id": "http://www.ontobee.org/ontology/AISM" }, { - "@id": "https://registry.identifiers.org/registry/pubchem.bioassay" + "@id": "http://www.ontobee.org/ontology/MIRO" }, { - "@id": "https://registry.identifiers.org/registry/combine.specifications" + "@id": "http://www.ontobee.org/ontology/NBO" }, { - "@id": "https://registry.identifiers.org/registry/phylomedb" + "@id": "http://www.ontobee.org/ontology/WBPhenotype" }, { - "@id": "https://registry.identifiers.org/registry/kegg.environ" + "@id": "http://www.ontobee.org/ontology/OHPI" }, { - "@id": "https://registry.identifiers.org/registry/rgd" + "@id": "http://www.ontobee.org/ontology/HSO" }, { - "@id": "https://registry.identifiers.org/registry/pypi" + "@id": "http://www.ontobee.org/ontology/PSO" }, { - "@id": "https://registry.identifiers.org/registry/pina" + "@id": "http://www.ontobee.org/ontology/PdumDv" }, { - "@id": "https://registry.identifiers.org/registry/genpept" + "@id": "http://www.ontobee.org/ontology/AEO" }, { - "@id": "https://registry.identifiers.org/registry/addgene" + "@id": "http://www.ontobee.org/ontology/OBCS" }, { - "@id": "https://registry.identifiers.org/registry/insdc" + "@id": "http://www.ontobee.org/ontology/EFO" }, { - "@id": "https://registry.identifiers.org/registry/nlfff" + "@id": "http://www.ontobee.org/ontology/GO" }, { - "@id": "https://registry.identifiers.org/registry/biocarta.pathway" + "@id": "http://www.ontobee.org/ontology/HTN" }, { - "@id": "https://registry.identifiers.org/registry/cameo" + "@id": "http://www.ontobee.org/ontology/MAXO" }, { - "@id": "https://registry.identifiers.org/registry/gxa.expt" + "@id": "http://www.ontobee.org/ontology/VBO" }, { - "@id": "https://registry.identifiers.org/registry/paleodb" + "@id": "http://www.ontobee.org/ontology/MCRO" }, { - "@id": "https://registry.identifiers.org/registry/mmmp:biomaps" + "@id": "http://www.ontobee.org/ontology/RO" }, { - "@id": "https://registry.identifiers.org/registry/issn" + "@id": "http://www.ontobee.org/ontology/FMA" }, { - "@id": "https://registry.identifiers.org/registry/aftol.taxonomy" + "@id": "http://www.ontobee.org/ontology/ICEO" }, { - "@id": "https://registry.identifiers.org/registry/paxdb.protein" + "@id": "http://www.ontobee.org/ontology/UPA" }, { - "@id": "https://registry.identifiers.org/registry/orcid" + "@id": "http://www.ontobee.org/ontology/CEPH" }, { - "@id": "https://registry.identifiers.org/registry/panther.pthcmp" + "@id": "http://www.ontobee.org/ontology/CHEBI" }, { - "@id": "https://registry.identifiers.org/registry/echobase" + "@id": "http://www.ontobee.org/ontology/NCIT" }, { - "@id": "https://registry.identifiers.org/registry/oclc" + "@id": "http://www.ontobee.org/ontology/RNAO" }, { - "@id": "https://registry.identifiers.org/registry/google.patent" + "@id": "http://www.ontobee.org/ontology/CLAO" }, { - "@id": "https://registry.identifiers.org/registry/nbn" + "@id": "http://www.ontobee.org/ontology/OGI" }, { - "@id": "https://registry.identifiers.org/registry/bdsc" + "@id": "http://www.ontobee.org/ontology/FOVT" }, { - "@id": "https://registry.identifiers.org/registry/mipmod" + "@id": "http://www.ontobee.org/ontology/ZP" }, { - "@id": "https://registry.identifiers.org/registry/idr" + "@id": "http://www.ontobee.org/ontology/CARO" }, { - "@id": "https://registry.identifiers.org/registry/dragondb.protein" + "@id": "http://www.ontobee.org/ontology/GENO" }, { - "@id": "https://registry.identifiers.org/registry/zinc" + "@id": "http://www.ontobee.org/ontology/EMAPA" }, { - "@id": "https://registry.identifiers.org/registry/molmedb" + "@id": "http://www.ontobee.org/ontology/ARO" }, { - "@id": "https://registry.identifiers.org/registry/togovar" + "@id": "http://www.ontobee.org/ontology/VIDO" }, { - "@id": "https://registry.identifiers.org/registry/miriam.collection" + "@id": "http://www.ontobee.org/ontology/EDAM" }, { - "@id": "https://registry.identifiers.org/registry/bigg.reaction" + "@id": "http://www.ontobee.org/ontology/MFOMD" }, { - "@id": "https://registry.identifiers.org/registry/pass2" + "@id": "http://www.ontobee.org/ontology/CHMO" }, { - "@id": "https://registry.identifiers.org/registry/subtilist" + "@id": "http://www.ontobee.org/ontology/COB" }, { - "@id": "https://registry.identifiers.org/registry/soybase" + "@id": "http://www.ontobee.org/ontology/OMRSE" }, { - "@id": "https://registry.identifiers.org/registry/mesh.2013" + "@id": "http://www.ontobee.org/ontology/XCO" }, { - "@id": "https://registry.identifiers.org/registry/gmd.ref" + "@id": "http://www.ontobee.org/ontology/AMPHX" }, { - "@id": "https://registry.identifiers.org/registry/autdb" + "@id": "http://www.ontobee.org/ontology/PORO" }, { - "@id": "https://registry.identifiers.org/registry/mirex" + "@id": "http://www.ontobee.org/ontology/CDNO" }, { - "@id": "https://registry.identifiers.org/registry/iao" + "@id": "http://www.ontobee.org/ontology/OAE" }, { - "@id": "https://registry.identifiers.org/registry/comptox" + "@id": "http://www.ontobee.org/ontology/GECKO" }, { - "@id": "https://registry.identifiers.org/registry/asin" + "@id": "http://www.ontobee.org/ontology/MPATH" }, { - "@id": "https://registry.identifiers.org/registry/oid" + "@id": "http://www.ontobee.org/ontology/ONTONEO" }, { - "@id": "https://registry.identifiers.org/registry/oryzabase.stage" + "@id": "http://www.ontobee.org/ontology/IAO" }, { - "@id": "https://registry.identifiers.org/registry/kaggle" + "@id": "http://www.ontobee.org/ontology/AGRO" }, { - "@id": "https://registry.identifiers.org/registry/gold" + "@id": "http://www.ontobee.org/ontology/XLMOD" }, { - "@id": "https://registry.identifiers.org/registry/mod" + "@id": "http://www.ontobee.org/ontology/DDPHENO" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.compound" + "@id": "http://www.ontobee.org/ontology/DIDEO" }, { - "@id": "https://registry.identifiers.org/registry/pmap.cutdb" + "@id": "http://www.ontobee.org/ontology/HsapDv" }, { - "@id": "https://registry.identifiers.org/registry/bacmap.map" + "@id": "http://www.ontobee.org/ontology/CLO" }, { - "@id": "https://registry.identifiers.org/registry/rgd.qtl" + "@id": "http://www.ontobee.org/ontology/INO" }, { - "@id": "https://registry.identifiers.org/registry/flowrepository" + "@id": "http://www.ontobee.org/ontology/CTO" }, { - "@id": "https://registry.identifiers.org/registry/bigg.model" + "@id": "http://www.ontobee.org/ontology/OMIABIS" }, { - "@id": "https://registry.identifiers.org/registry/swissregulon" + "@id": "http://www.ontobee.org/ontology/SIO" }, { - "@id": "https://registry.identifiers.org/registry/dailymed" + "@id": "http://www.ontobee.org/ontology/HOM" }, { - "@id": "https://registry.identifiers.org/registry/so" + "@id": "http://www.ontobee.org/ontology/SEPIO" }, { - "@id": "https://registry.identifiers.org/registry/dandi" + "@id": "http://www.ontobee.org/ontology/OHMI" }, { - "@id": "https://registry.identifiers.org/registry/ega.dataset" + "@id": "http://www.ontobee.org/ontology/BCGO" }, { - "@id": "https://registry.identifiers.org/registry/dg.4503" + "@id": "http://www.ontobee.org/ontology/HANCESTRO" }, { - "@id": "https://registry.identifiers.org/registry/go_ref" + "@id": "http://www.ontobee.org/ontology/VTO" }, { - "@id": "https://registry.identifiers.org/registry/tcdb" + "@id": "http://www.ontobee.org/ontology/NCRO" }, { - "@id": "https://registry.identifiers.org/registry/chembl.target" + "@id": "http://www.ontobee.org/ontology/KISAO" }, { - "@id": "https://registry.identifiers.org/registry/bioportal" + "@id": "http://www.ontobee.org/ontology/PPO" }, { - "@id": "https://registry.identifiers.org/registry/biosimulators" + "@id": "http://www.ontobee.org/ontology/OMIT" }, { - "@id": "https://registry.identifiers.org/registry/odc.sci" + "@id": "http://www.ontobee.org/ontology/CLYH" }, { - "@id": "https://registry.identifiers.org/registry/mex" + "@id": "http://www.ontobee.org/ontology/DOID" }, { - "@id": "https://registry.identifiers.org/registry/pazar" + "@id": "http://www.ontobee.org/ontology/XL" }, { - "@id": "https://registry.identifiers.org/registry/gtex" + "@id": "http://www.ontobee.org/ontology/ONTOAVIDA" }, { - "@id": "https://registry.identifiers.org/registry/gpmdb" + "@id": "http://www.ontobee.org/ontology/DINTO" }, { - "@id": "https://registry.identifiers.org/registry/cath.superfamily" + "@id": "http://www.ontobee.org/ontology/VO" }, { - "@id": "https://registry.identifiers.org/registry/clinicaltrials" + "@id": "http://www.ontobee.org/ontology/DUO" }, { - "@id": "https://registry.identifiers.org/registry/napdi" + "@id": "http://www.ontobee.org/ontology/MONDO" }, { - "@id": "https://registry.identifiers.org/registry/repeatsdb.structure" + "@id": "http://www.ontobee.org/ontology/MICRO" }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.marker" + "@id": "http://www.ontobee.org/ontology/MS" }, { - "@id": "https://registry.identifiers.org/registry/modeldb.concept" + "@id": "http://www.ontobee.org/ontology/ONS" }, { - "@id": "https://registry.identifiers.org/registry/cath" + "@id": "http://www.ontobee.org/ontology/CIO" }, { - "@id": "https://registry.identifiers.org/registry/iedb" + "@id": "http://www.ontobee.org/ontology/CRO" }, { - "@id": "https://registry.identifiers.org/registry/4dn" + "@id": "http://www.ontobee.org/ontology/OPL" }, { - "@id": "https://registry.identifiers.org/registry/sider.effect" + "@id": "http://www.ontobee.org/ontology/SIBO" }, { - "@id": "https://registry.identifiers.org/registry/massbank" + "@id": "http://www.ontobee.org/ontology/CVDO" }, { - "@id": "https://registry.identifiers.org/registry/sciflection" + "@id": "http://www.ontobee.org/ontology/IDO" }, { - "@id": "https://registry.identifiers.org/registry/homd.taxon" + "@id": "http://www.ontobee.org/ontology/GEO" }, { - "@id": "https://registry.identifiers.org/registry/bgee.family" + "@id": "http://www.ontobee.org/ontology/FYPO" }, { - "@id": "https://registry.identifiers.org/registry/hssp" + "@id": "http://www.ontobee.org/ontology/TO" }, { - "@id": "https://registry.identifiers.org/registry/medlineplus" + "@id": "http://www.ontobee.org/ontology/SDGIO" }, { - "@id": "https://registry.identifiers.org/registry/refseq.gcf" + "@id": "http://www.ontobee.org/ontology/ECO" }, { - "@id": "https://registry.identifiers.org/registry/panther.pathway" + "@id": "http://www.ontobee.org/ontology/PATO" }, { - "@id": "https://registry.identifiers.org/registry/arachnoserver" + "@id": "http://www.ontobee.org/ontology/EPIO" }, { - "@id": "https://registry.identifiers.org/registry/mdm" + "@id": "http://www.ontobee.org/ontology/MIAPA" }, { - "@id": "https://registry.identifiers.org/registry/ped.ensemble" + "@id": "http://www.ontobee.org/ontology/HAO" }, { - "@id": "https://registry.identifiers.org/registry/doid" + "@id": "http://www.ontobee.org/ontology/TTO" }, { - "@id": "https://registry.identifiers.org/registry/civic.eid" + "@id": "http://www.ontobee.org/ontology/OHD" }, { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide" + "@id": "http://www.ontobee.org/ontology/PCL" }, { - "@id": "https://registry.identifiers.org/registry/multicellds.collection" + "@id": "http://www.ontobee.org/ontology/PW" }, { - "@id": "https://registry.identifiers.org/registry/hp" + "@id": "http://www.ontobee.org/ontology/FBbt" }, { - "@id": "https://registry.identifiers.org/registry/ccds" + "@id": "http://www.ontobee.org/ontology/CMO" }, { - "@id": "https://registry.identifiers.org/registry/px" + "@id": "http://www.ontobee.org/ontology/OMO" }, { - "@id": "https://registry.identifiers.org/registry/bbtp" + "@id": "http://www.ontobee.org/ontology/BSPO" }, { - "@id": "https://registry.identifiers.org/registry/lincs.protein" + "@id": "http://www.ontobee.org/ontology/GENEPIO" }, { - "@id": "https://registry.identifiers.org/registry/rbk" + "@id": "http://www.ontobee.org/ontology/ExO" }, { - "@id": "https://registry.identifiers.org/registry/sasbdb" + "@id": "http://www.ontobee.org/ontology/FBdv" }, { - "@id": "https://registry.identifiers.org/registry/smpdb" + "@id": "http://www.ontobee.org/ontology/MMO" }, { - "@id": "https://registry.identifiers.org/registry/kegg.glycan" + "@id": "http://www.ontobee.org/ontology/AFO" }, { - "@id": "https://registry.identifiers.org/registry/interpro" + "@id": "http://www.ontobee.org/ontology/TXPO" }, { - "@id": "https://registry.identifiers.org/registry/bmrb" + "@id": "http://www.ontobee.org/ontology/ONE" }, { - "@id": "https://registry.identifiers.org/registry/phosphosite.protein" + "@id": "http://www.ontobee.org/ontology/ORNASEQ" }, { - "@id": "https://registry.identifiers.org/registry/mge" + "@id": "http://www.ontobee.org/ontology/OlatDv" }, { - "@id": "https://registry.identifiers.org/registry/pathwaycommons" + "@id": "http://www.ontobee.org/ontology/FIDEO" }, { - "@id": "https://registry.identifiers.org/registry/biogrid" + "@id": "http://www.ontobee.org/ontology/FLOPO" }, { - "@id": "https://registry.identifiers.org/registry/rouge" + "@id": "http://www.ontobee.org/ontology/OBA" }, { - "@id": "https://registry.identifiers.org/registry/omid" + "@id": "http://www.ontobee.org/ontology/ZECO" }, { - "@id": "https://registry.identifiers.org/registry/chembl.compound" + "@id": "http://www.ontobee.org/ontology/NCBITaxon" }, { - "@id": "https://registry.identifiers.org/registry/unigene" + "@id": "http://www.ontobee.org/ontology/GAZ" }, { - "@id": "https://registry.identifiers.org/registry/rebase" + "@id": "http://www.ontobee.org/ontology/ENVO" }, { - "@id": "https://registry.identifiers.org/registry/rnacentral" + "@id": "http://www.ontobee.org/ontology/TAXRANK" }, { - "@id": "https://registry.identifiers.org/registry/arxiv" + "@id": "http://www.ontobee.org/ontology/OVAE" }, { - "@id": "https://registry.identifiers.org/registry/gramene.gene" + "@id": "http://www.ontobee.org/ontology/APOLLO_SV" }, { - "@id": "https://registry.identifiers.org/registry/bgee.gene" + "@id": "http://www.ontobee.org/ontology/OPMI" }, { - "@id": "https://registry.identifiers.org/registry/gcst" + "@id": "http://www.ontobee.org/ontology/CL" }, { - "@id": "https://registry.identifiers.org/registry/otl" + "@id": "http://www.ontobee.org/ontology/ECTO" }, { - "@id": "https://registry.identifiers.org/registry/insdc.cds" + "@id": "http://www.ontobee.org/ontology/TRANS" }, { - "@id": "https://registry.identifiers.org/registry/grin.taxonomy" + "@id": "http://www.ontobee.org/ontology/VT" }, { - "@id": "https://registry.identifiers.org/registry/hamap" + "@id": "http://www.ontobee.org/ontology/OGG" }, { - "@id": "https://registry.identifiers.org/registry/kegg.metagenome" + "@id": "http://www.ontobee.org/ontology/PSDO" }, { - "@id": "https://registry.identifiers.org/registry/rfam" + "@id": "http://www.ontobee.org/ontology/OMP" }, { - "@id": "https://registry.identifiers.org/registry/pmc" + "@id": "http://www.ontobee.org/ontology/MPIO" }, { - "@id": "https://registry.identifiers.org/registry/mir" + "@id": "http://www.ontobee.org/ontology/UBERON" }, { - "@id": "https://registry.identifiers.org/registry/dashr.expression" + "@id": "http://www.ontobee.org/ontology/PLANA" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.compound" + "@id": "http://www.ontobee.org/ontology/FOBI" }, { - "@id": "https://registry.identifiers.org/registry/geo" + "@id": "http://www.ontobee.org/ontology/PROCO" }, { - "@id": "https://registry.identifiers.org/registry/chembl" + "@id": "http://www.ontobee.org/ontology/WBbt" }, { - "@id": "https://registry.identifiers.org/registry/slm" + "@id": "http://www.ontobee.org/ontology/XPO" }, { - "@id": "https://registry.identifiers.org/registry/geogeo" + "@id": "http://www.ontobee.org/ontology/OOSTT" }, { - "@id": "https://registry.identifiers.org/registry/sedml.language" + "@id": "http://www.ontobee.org/ontology/UPHENO" }, { - "@id": "https://registry.identifiers.org/registry/wikipathways" + "@id": "http://www.ontobee.org/ontology/REX" }, { - "@id": "https://registry.identifiers.org/registry/bbkg" + "@id": "http://www.ontobee.org/ontology/OARCS" }, { - "@id": "https://registry.identifiers.org/registry/cbioportal" + "@id": "http://www.ontobee.org/ontology/SWO" }, { - "@id": "https://registry.identifiers.org/registry/unists" + "@id": "http://www.ontobee.org/ontology/SYMP" }, { - "@id": "https://registry.identifiers.org/registry/ped" + "@id": "http://www.ontobee.org/ontology/XAO" }, { - "@id": "https://registry.identifiers.org/registry/genefarm" + "@id": "http://www.ontobee.org/ontology/PCO" }, { - "@id": "https://registry.identifiers.org/registry/arrayexpress" + "@id": "http://www.ontobee.org/ontology/STATO" }, { - "@id": "https://registry.identifiers.org/registry/scretf" + "@id": "http://www.ontobee.org/ontology/CIDO" }, { - "@id": "https://registry.identifiers.org/registry/pubchem.compound" + "@id": "http://www.ontobee.org/ontology/MA" }, { - "@id": "https://registry.identifiers.org/registry/zfin" + "@id": "http://www.ontobee.org/ontology/NGBO" }, { - "@id": "https://registry.identifiers.org/registry/fairsharing" + "@id": "http://www.ontobee.org/ontology/MmusDv" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.metazoa" + "@id": "http://www.ontobee.org/ontology/ECAO" }, { - "@id": "https://registry.identifiers.org/registry/uniprot.chain" + "@id": "http://www.ontobee.org/ontology/MOP" }, { - "@id": "https://registry.identifiers.org/registry/ecyano.experiment" + "@id": "http://www.ontobee.org/ontology/FOODON" }, { - "@id": "https://registry.identifiers.org/registry/img.gene" + "@id": "http://www.ontobee.org/ontology/RS" }, { - "@id": "https://registry.identifiers.org/registry/uniparc" + "@id": "http://www.ontobee.org/ontology/PLANP" }, { - "@id": "https://registry.identifiers.org/registry/validatordb" + "@id": "http://www.ontobee.org/ontology/FIX" }, { - "@id": "https://registry.identifiers.org/registry/crop2ml" + "@id": "http://www.ontobee.org/ontology/TGMA" }, { - "@id": "https://registry.identifiers.org/registry/metacyc.reaction" + "@id": "http://www.ontobee.org/ontology/SCDO" }, { - "@id": "https://registry.identifiers.org/registry/exac.gene" + "@id": "http://www.ontobee.org/ontology/DPO" }, { - "@id": "https://registry.identifiers.org/registry/mmdb" + "@id": "http://www.ontobee.org/ontology/MF" }, { - "@id": "https://registry.identifiers.org/registry/aphidbase.transcript" + "@id": "http://www.ontobee.org/ontology/EPSO" }, { - "@id": "https://registry.identifiers.org/registry/apid.interactions" + "@id": "http://www.ontobee.org/ontology/VariO" }, { - "@id": "https://registry.identifiers.org/registry/psipar" + "@id": "http://www.ontobee.org/ontology/PO" }, { - "@id": "https://registry.identifiers.org/registry/insdc.gca" + "@id": "http://www.ontobee.org/ontology/BFO" }, { - "@id": "https://registry.identifiers.org/registry/pride.project" + "@id": "http://www.ontobee.org/ontology/FAO" }, { - "@id": "https://registry.identifiers.org/registry/cl" + "@id": "http://www.ontobee.org/ontology/BTO" }, { - "@id": "https://registry.identifiers.org/registry/datanator.metabolite" + "@id": "http://www.ontobee.org/ontology/RXNO" }, { - "@id": "https://registry.identifiers.org/registry/antweb" + "@id": "http://www.ontobee.org/ontology/miRNAO" }, { - "@id": "https://registry.identifiers.org/registry/reactome" + "@id": "http://www.ontobee.org/ontology/OGSF" }, { - "@id": "https://registry.identifiers.org/registry/swh" + "@id": "http://www.ontobee.org/ontology/GSSO" }, { - "@id": "https://registry.identifiers.org/registry/signaling-gateway" + "@id": "http://www.ontobee.org/ontology/SBO" }, { - "@id": "https://registry.identifiers.org/registry/darc" + "@id": "http://www.ontobee.org/ontology/CMF" }, { - "@id": "https://registry.identifiers.org/registry/kegg.compound" + "@id": "http://www.ontobee.org/ontology/HP" }, { - "@id": "https://registry.identifiers.org/registry/viralzone" + "@id": "http://www.ontobee.org/ontology/PHIPO" }, { - "@id": "https://registry.identifiers.org/registry/cubedb" + "@id": "http://www.ontobee.org/ontology/WBls" }, { - "@id": "https://registry.identifiers.org/registry/hcvdb" + "@id": "http://www.ontobee.org/ontology/BAO" }, { - "@id": "https://registry.identifiers.org/registry/dragondb.locus" + "@id": "http://www.ontobee.org/ontology/EPO" }, { - "@id": "https://registry.identifiers.org/registry/bigg.compartment" + "@id": "http://www.ontobee.org/ontology/ZFS" }, { - "@id": "https://registry.identifiers.org/registry/pigqtldb" + "@id": "http://www.ontobee.org/ontology/APO" }, { - "@id": "https://registry.identifiers.org/registry/nuclearbd" + "@id": "http://www.ontobee.org/ontology/CDAO" }, { - "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos" + "@id": "http://www.ontobee.org/ontology/LEPAO" }, { - "@id": "https://registry.identifiers.org/registry/mgi" + "@id": "http://www.ontobee.org/ontology/MRO" }, { - "@id": "https://registry.identifiers.org/registry/phenolexplorer" + "@id": "http://www.ontobee.org/ontology/BCO" }, { - "@id": "https://registry.identifiers.org/registry/mgnify.samp" + "@id": "http://www.ontobee.org/ontology/MFMO" }, { - "@id": "https://registry.identifiers.org/registry/gold.meta" + "@id": "http://www.ontobee.org/ontology/OBIB" }, { - "@id": "https://registry.identifiers.org/registry/hgmd" + "@id": "http://www.ontobee.org/ontology/NDF-RT" }, { - "@id": "https://registry.identifiers.org/registry/polbase" + "@id": "http://www.ontobee.org/ontology/CTENO" }, { - "@id": "https://registry.identifiers.org/registry/metabolights" + "@id": "http://www.ontobee.org/ontology/MI" }, { - "@id": "https://registry.identifiers.org/registry/nando" + "@id": "http://www.ontobee.org/ontology/ZFA" }, { - "@id": "https://registry.identifiers.org/registry/snomedct" + "@id": "http://www.ontobee.org/ontology/ADO" }, { - "@id": "https://registry.identifiers.org/registry/bugbase.protocol" + "@id": "http://www.ontobee.org/ontology/MAMO" }, { - "@id": "https://registry.identifiers.org/registry/treebase" + "@id": "http://www.ontobee.org/ontology/PECO" }, { - "@id": "https://registry.identifiers.org/registry/virsirna" + "@id": "http://www.ontobee.org/ontology/CHEMINF" }, { - "@id": "https://registry.identifiers.org/registry/gdc" + "@id": "http://www.ontobee.org/ontology/T4FS" }, { - "@id": "https://registry.identifiers.org/registry/unii" + "@id": "http://www.ontobee.org/ontology/TADS" }, { - "@id": "https://registry.identifiers.org/registry/unimod" - }, + "@id": "http://www.ontobee.org/ontology/RBO" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OntoBee" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "http://www.ontobee.org/" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "AGRO" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "http://www.ontobee.org/ontology/$1" + }, + "https://bioregistry.io/schema/#0000007": { + "@value": "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + } + }, + { + "@id": "https://bioregistry.io/registry/plana", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/planaria-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gitlab" + "@id": "http://www.ontobee.org/ontology/PLANA" }, { - "@id": "https://registry.identifiers.org/registry/string" + "@id": "https://bioportal.bioontology.org/ontologies/PLANA" }, { - "@id": "https://registry.identifiers.org/registry/mzspec" + "@id": "https://www.obofoundry.org/ontology/plana" }, { - "@id": "https://registry.identifiers.org/registry/dragondb.dna" + "@id": "https://fairsharing.org/FAIRsharing.g1qrqs" }, { - "@id": "https://registry.identifiers.org/registry/ma" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana" }, { - "@id": "https://registry.identifiers.org/registry/charprot" + "@id": "http://aber-owl.net/ontology/PLANA" }, { - "@id": "https://registry.identifiers.org/registry/merops.family" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLANA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/transyt" + "@value": "anatomy" }, { - "@id": "https://registry.identifiers.org/registry/paxdb.organism" + "@value": "developmental biology" }, { - "@id": "https://registry.identifiers.org/registry/chebi" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/insdc.sra" + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/planaria-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PLANA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/plana.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://registry.identifiers.org/registry/isbn" + "@id": "https://bioregistry.io/registry/ro" + } + ], + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/planp" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3528-5267" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PLANA_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PLANA_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "plana" + } + }, + { + "@id": "https://bioregistry.io/registry/mod", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/HUPO-PSI/psi-mod-CV" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Protein modification" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/mod" }, { - "@id": "https://registry.identifiers.org/registry/eggnog" + "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD" }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.gene" + "@id": "https://registry.identifiers.org/registry/mod" }, { - "@id": "https://registry.identifiers.org/registry/norine" + "@id": "http://aber-owl.net/ontology/PSIMOD" }, { - "@id": "https://registry.identifiers.org/registry/pocketome" + "@id": "https://fairsharing.org/FAIRsharing.2m4ms9" }, { - "@id": "https://registry.identifiers.org/registry/bigg.metabolite" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOD" }, { - "@id": "https://registry.identifiers.org/registry/neurolex" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD" }, { - "@id": "https://registry.identifiers.org/registry/pgs" + "@id": "http://www.ontobee.org/ontology/MOD" }, { - "@id": "https://registry.identifiers.org/registry/cog" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod" }, { - "@id": "https://registry.identifiers.org/registry/matrixdb.association" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod" }, { - "@id": "https://registry.identifiers.org/registry/neurovault.image" + "@id": "https://registry.bio2kg.org/resource/psi.mod" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "molecule" }, { - "@id": "https://registry.identifiers.org/registry/cazy" + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/ocid" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/ilx" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/ttd.drug" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/minid" + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.psidev.info/MOD" + }, + "https://bioregistry.io/schema/#0000005": "01467", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MOD_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mod.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0045-7698" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "PSI-MOD" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MOD_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MOD_01467" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mod" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DATACITE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.s9ztmd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/google.patent", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Google Patents" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent" }, { - "@id": "https://registry.identifiers.org/registry/molbase" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent" }, { - "@id": "https://registry.identifiers.org/registry/civic.mpid" + "@id": "https://registry.identifiers.org/registry/google.patent" }, { - "@id": "https://registry.identifiers.org/registry/rnamods" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOOGLE.PATENT" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.google.com/patents/" + }, + "https://bioregistry.io/schema/#0000005": "US4145692", + "https://bioregistry.io/schema/#0000006": "https://www.google.com/patents/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "patent" + }, + "https://bioregistry.io/schema/#0000024": "https://www.google.com/patents/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.google.com/patents/US4145692" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "google.patent" + } + }, + { + "@id": "https://orcid.org/0000-0003-4333-1857", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tuan Amith" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "muamith@utmb.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sciflection", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/euclinicaltrials", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EU Clinical Trials" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials" }, { - "@id": "https://registry.identifiers.org/registry/umls" + "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS" }, { - "@id": "https://registry.identifiers.org/registry/uo" + "@id": "https://registry.identifiers.org/registry/euclinicaltrials" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.clinicaltrialsregister.eu/" + }, + "https://bioregistry.io/schema/#0000005": "2008-005144-16", + "https://bioregistry.io/schema/#0000006": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}\\-\\d{6}\\-\\d{2}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "EUCTR" + }, + "https://bioregistry.io/schema/#0000024": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=2008-005144-16" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "euclinicaltrials" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://www.wikidata.org/entity/P557", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mphj4z", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4shj9c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100013650", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/ehdaa", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). Timing details will be added to the abstract version of the ontology in a future release.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human developmental anatomy, abstract version" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/ehdaa" }, { - "@id": "https://registry.identifiers.org/registry/jcggdb" + "@id": "http://aber-owl.net/ontology/EHDAA" }, { - "@id": "https://registry.identifiers.org/registry/kegg.genes" + "@id": "https://registry.bio2kg.org/resource/ehdaa" }, { - "@id": "https://registry.identifiers.org/registry/civic.did" + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA" }, { - "@id": "https://registry.identifiers.org/registry/piroplasma" + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "human" }, { - "@id": "https://registry.identifiers.org/registry/hpm.peptide" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/viaf" + "@value": "anatomy" }, { - "@id": "https://registry.identifiers.org/registry/scop" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/pmp" + "@value": "development" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://genex.hgu.mrc.ac.uk/" + }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDAA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/EHDAA/6/ehdaa.obo" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N6ec02d7552d843f1b768c8c76746301a" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDAA_", + "https://bioregistry.io/schema/#0000029": { + "@value": "ehdaa" + } + }, + { + "@id": "_:N6ec02d7552d843f1b768c8c76746301a", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jonathan Bard" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "J.Bard@ed.ac.uk" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/pao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0002-8160-7941", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Leen Vandepitte" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "leen.vandepitte@vliz.be" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hssp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/XL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/slkbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SUM Breast Cancer Cell Line Knowledge Base" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://sumlineknowledgebase.com/" + }, + "https://bioregistry.io/schema/#0000005": "3618", + "https://bioregistry.io/schema/#0000006": "https://sumlineknowledgebase.com/?page_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://sumlineknowledgebase.com/?page_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sumlineknowledgebase.com/?page_id=3618" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "slkbase" + } + }, + { + "@id": "https://bioregistry.io/registry/fbsp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://registry.identifiers.org/registry/odam" + "@id": "https://bioregistry.io/registry/flybase" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fly taxonomy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.obofoundry.org/ontology/fbsp" }, { - "@id": "https://registry.identifiers.org/registry/gramene.qtl" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp" }, { - "@id": "https://registry.identifiers.org/registry/dlxb" + "@id": "http://aber-owl.net/ontology/FB-SP" }, { - "@id": "https://registry.identifiers.org/registry/imgt.hla" + "@id": "https://bioportal.bioontology.org/ontologies/FB-SP" }, { - "@id": "https://registry.identifiers.org/registry/biosystems" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/genetree" + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.flybase.org/" + }, + "https://bioregistry.io/schema/#0000005": "00000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBSP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fbsp.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1373-1705" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBSP_", + "https://bioregistry.io/schema/#0000029": { + "@value": "fbsp" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vdbagq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zzgvrv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/sharkipedia.species", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.fungi" + "@id": "https://bioregistry.io/registry/sharkipedia" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sharkipedia/sharkipedia" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sharkipedia Species" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.sharkipedia.org/" + }, + "https://bioregistry.io/schema/#0000005": "983", + "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/species/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1710-8256" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/species/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.sharkipedia.org/species/983" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sharkipedia.species" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qnkw45", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-1725-179X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Matthias König" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "konigmatt@googlemail.com" + } + }, + { + "@id": "http://aber-owl.net/ontology/DUO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PFAM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/nmrshiftdb2", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NMRShiftDB structure" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://www.wikidata.org/entity/P9405" }, { - "@id": "https://registry.identifiers.org/registry/biotools" + "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N" }, { - "@id": "https://registry.identifiers.org/registry/pmdb" + "@id": "https://registry.identifiers.org/registry/nmrshiftdb2" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "analytical chemistry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nmrshiftdb.nmr.uni-koeln.de" + }, + "https://bioregistry.io/schema/#0000005": "234", + "https://bioregistry.io/schema/#0000006": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5990-4157" + }, + "https://bioregistry.io/schema/#0000024": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/234" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nmrshiftdb2" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wx5r6f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4537", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/gpcrnava", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Variant, which means any (non-artificial) variant that occurs in humans.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GPCR Natural Variants database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/gnd" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "pathway" }, { - "@id": "https://registry.identifiers.org/registry/atfdb.family" + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://nava.liacs.nl/" + }, + "https://bioregistry.io/schema/#0000005": "1150", + "https://bioregistry.io/schema/#0000006": "http://nava.liacs.nl/cgi-bin/nava.py?id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://nava.liacs.nl/cgi-bin/nava.py?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://nava.liacs.nl/cgi-bin/nava.py?id=1150" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gpcrnava" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t31wcb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/orthodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/oma.hog", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OMA HOGs" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/oma.hog" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://omabrowser.org" + }, + "https://bioregistry.io/schema/#0000005": "0459895", + "https://bioregistry.io/schema/#0000006": "https://omabrowser.org/oma/hog/HOG:$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://omabrowser.org/oma/hog/HOG:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://omabrowser.org/oma/hog/HOG:0459895" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oma.hog" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/flymine.chromosome", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FlyMine Chromosome Band" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/flymine" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/prosite" + "@value": "gene expression" }, { - "@id": "https://registry.identifiers.org/registry/snp2tfbs" + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.flymine.org/" + }, + "https://bioregistry.io/schema/#0000005": "1047874", + "https://bioregistry.io/schema/#0000006": "https://www.flymine.org/flymine/report/ChromosomeBand/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.flymine.org/flymine/report/ChromosomeBand/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.flymine.org/flymine/report/ChromosomeBand/1047874" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "flymine.chromosome" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/subtilist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/phytozome.locus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plant Genome Network" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/phytozome.locus" }, { - "@id": "https://registry.identifiers.org/registry/lrg" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome" }, { - "@id": "https://registry.identifiers.org/registry/emdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS" }, { - "@id": "https://registry.identifiers.org/registry/cabri" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.phytozome.net/" + }, + "https://bioregistry.io/schema/#0000005": "Glyma0021s00410", + "https://bioregistry.io/schema/#0000006": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "JGI Phytozome" + }, + "https://bioregistry.io/schema/#0000024": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:Glyma0021s00410" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "phytozome.locus" + } + }, + { + "@id": "https://registry.identifiers.org/registry/jcggdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/OLATDV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/mmo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A representation of the variety of methods used to make clinical and phenotype measurements.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Measurement method ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/MMO" }, { - "@id": "https://registry.identifiers.org/registry/ecyano.rule" + "@id": "https://bioregistry.io/metaregistry/biocontext/MMO" }, { - "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein" + "@id": "http://www.ontobee.org/ontology/MMO" }, { - "@id": "https://registry.identifiers.org/registry/biocyc" + "@id": "http://aber-owl.net/ontology/MMO" }, { - "@id": "https://registry.identifiers.org/registry/plasmodb" + "@id": "https://www.obofoundry.org/ontology/mmo" }, { - "@id": "https://registry.identifiers.org/registry/cst" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo" }, { - "@id": "https://registry.identifiers.org/registry/metanetx.chemical" + "@id": "https://fairsharing.org/FAIRsharing.bgkyd7" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/conoserver" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/gsso" + "@value": "preclinical studies" }, { - "@id": "https://registry.identifiers.org/registry/img.taxon" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/probonto" + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000" + }, + "https://bioregistry.io/schema/#0000005": "0000574", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mmo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6443-9376" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MMO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MMO_0000574" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mmo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cellosaurus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/idot", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Identifiers.org Terms" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot" }, { - "@id": "https://registry.identifiers.org/registry/kegg.disease" + "@id": "https://bioregistry.io/metaregistry/biocontext/idot" }, { - "@id": "https://registry.identifiers.org/registry/pscdb" - }, + "@id": "https://registry.identifiers.org/registry/idot" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://biomodels.net/vocab/idot.rdf" + }, + "https://bioregistry.io/schema/#0000005": "identifierPattern", + "https://bioregistry.io/schema/#0000006": "https://biomodels.net/vocab/idot.rdf#$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biomodels.net/vocab/idot.rdf#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biomodels.net/vocab/idot.rdf#identifierPattern" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "idot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2mk2zb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EPD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/gramene.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gramene Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/biomodels.db" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE" }, { - "@id": "https://registry.identifiers.org/registry/t3db" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_GENE" }, { - "@id": "https://registry.identifiers.org/registry/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene" }, { - "@id": "https://registry.identifiers.org/registry/go" - }, + "@id": "https://registry.identifiers.org/registry/gramene.gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.gramene.org/" + }, + "https://bioregistry.io/schema/#0000005": "GR:0080039", + "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/genes/search_gene?acc=$1", + "https://bioregistry.io/schema/#0000008": "^GR\\:\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "GR_GENE" + }, + "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/genes/search_gene?acc=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.gramene.org/db/genes/search_gene?acc=GR:0080039" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gramene.gene" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "http://aber-owl.net/ontology/OPL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/nembase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/miRNAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/noncodev3", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NONCODE v3" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bacdive" + "@id": "https://registry.identifiers.org/registry/noncodev3" }, { - "@id": "https://registry.identifiers.org/registry/gold.genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3" }, { - "@id": "https://registry.identifiers.org/registry/jcsd" + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3" }, { - "@id": "https://registry.identifiers.org/registry/sbo" - }, + "@id": "https://registry.bio2kg.org/resource/noncode" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/sugarbind" + "@value": "nucleotide" }, { - "@id": "https://registry.identifiers.org/registry/noncodev4.gene" - }, + "@value": "expression" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.noncode.org/" + }, + "https://bioregistry.io/schema/#0000005": "377550", + "https://bioregistry.io/schema/#0000006": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=377550" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "noncodev3" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ngl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MFOEM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.p77ph9", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ecoliwiki", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EcoliWiki from EcoliHub" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/civic.aid" + "@id": "https://fairsharing.org/FAIRsharing.tx95wa" }, { - "@id": "https://registry.identifiers.org/registry/biosimulations" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki" }, { - "@id": "https://registry.identifiers.org/registry/tair.name" + "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.reaction" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki" }, { - "@id": "https://registry.identifiers.org/registry/affy.probeset" - }, + "@id": "https://registry.identifiers.org/registry/ecoliwiki" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/vfdb.genus" + "@value": "genomics" }, { - "@id": "https://registry.identifiers.org/registry/ec-code" + "@value": "bioinformatics" }, { - "@id": "https://registry.identifiers.org/registry/xenbase" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/wikigenes" - }, + "@value": "ontology and terminology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ecoliwiki.net/colipedia/" + }, + "https://bioregistry.io/schema/#0000005": "aaeA", + "https://bioregistry.io/schema/#0000006": "http://ecoliwiki.net/colipedia/index.php/$1:Gene", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ecoliwiki:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ecoliwiki.net/colipedia/index.php/aaeA:Gene" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecoliwiki" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/scdo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/glycomedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/symp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/igsn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Geo Sample Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset" + "@id": "https://registry.identifiers.org/registry/igsn" }, { - "@id": "https://registry.identifiers.org/registry/skm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn" }, { - "@id": "https://registry.identifiers.org/registry/depod" - }, + "@id": "https://fairsharing.org/FAIRsharing.c7f365" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.geosamples.org/" + }, + "https://bioregistry.io/schema/#0000005": "AU124", + "https://bioregistry.io/schema/#0000006": "http://igsn.org/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://igsn.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://igsn.org/AU124" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "igsn" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/antweb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/neuromorpho", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuroMorpho" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bto" + "@id": "http://edamontology.org/data_2657" }, { - "@id": "https://registry.identifiers.org/registry/bao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho" }, { - "@id": "https://registry.identifiers.org/registry/atcc" + "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO" }, { - "@id": "https://registry.identifiers.org/registry/bgee.stage" + "@id": "https://registry.identifiers.org/registry/neuromorpho" }, { - "@id": "https://registry.identifiers.org/registry/cas" - }, + "@id": "https://registry.bio2kg.org/resource/neuromorpho" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/dictybase.est" + "@value": "anatomy" }, { - "@id": "https://registry.identifiers.org/registry/ecyano.entity" - }, + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://neuromorpho.org/index.jsp" + }, + "https://bioregistry.io/schema/#0000005": "Rosa2", + "https://bioregistry.io/schema/#0000006": "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://neuromorpho.org/neuron_info.jsp?neuron_name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://neuromorpho.org/neuron_info.jsp?neuron_name=Rosa2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "neuromorpho" + } + }, + { + "@id": "http://edamontology.org/data_1162", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5Pze7l", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/orphanet.ordo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-8003-6860", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Samuel Friedman" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "samuel.friedman@cammlab.org" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SYMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/REXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000412", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_338", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/CDNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/merops.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/d1id" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://registry.identifiers.org/registry/ideal" - }, + "@id": "https://bioregistry.io/registry/merops" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MEROPS Family" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/noncodev3" + "@id": "https://registry.identifiers.org/registry/merops.family" }, { - "@id": "https://registry.identifiers.org/registry/uniprot.isoform" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family" }, { - "@id": "https://registry.identifiers.org/registry/ctd.disease" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.FAMILY" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://merops.sanger.ac.uk/index.htm" + }, + "https://bioregistry.io/schema/#0000005": "S1", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1", + "https://bioregistry.io/schema/#0000008": "^[SCTAGMNU]\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=S1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "merops.family" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/gecko", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mtbd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/lgai.cede", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/ivdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Influenza Virus Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/ivdb" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/dbg2introns" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/arraymap" + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.bacteria" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://influenza.psych.ac.cn/" + }, + "https://bioregistry.io/schema/#0000005": "E13035", + "https://bioregistry.io/schema/#0000006": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=E13035" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ivdb" + } + }, + { + "@id": "https://bioregistry.io/registry/pharmgkb.disease", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PharmGKB Disease" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/stitch" + "@id": "http://www.wikidata.org/entity/P7001" }, { - "@id": "https://registry.identifiers.org/registry/gdsc" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE" }, { - "@id": "https://registry.identifiers.org/registry/ensembl" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE" }, { - "@id": "https://registry.identifiers.org/registry/euclinicaltrials" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease" }, { - "@id": "https://registry.identifiers.org/registry/occ" + "@id": "http://edamontology.org/data_2651" }, { - "@id": "https://registry.identifiers.org/registry/bitbucket" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease" }, { - "@id": "https://registry.identifiers.org/registry/lgic" - }, + "@id": "https://registry.identifiers.org/registry/pharmgkb.disease" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "pharmacogenomics" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pharmgkb.org/" + }, + "https://bioregistry.io/schema/#0000005": "PA447218", + "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/disease/$1", + "https://bioregistry.io/schema/#0000008": "^PA\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/disease/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pharmgkb.org/disease/PA447218" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pharmgkb.disease" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.wikidata.org/entity/P486", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/pazar", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pazar Transcription Factor" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/multicellds.snapshot" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR" }, { - "@id": "https://registry.identifiers.org/registry/clinvar.record" + "@id": "https://registry.bio2kg.org/resource/pazar" }, { - "@id": "https://registry.identifiers.org/registry/metacyc.compound" + "@id": "https://fairsharing.org/FAIRsharing.33yggg" }, { - "@id": "https://registry.identifiers.org/registry/gateway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar" }, { - "@id": "https://registry.identifiers.org/registry/hpa" - }, + "@id": "https://registry.identifiers.org/registry/pazar" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/pkdb" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/glida.ligand" + "@value": "rna" }, { - "@id": "https://registry.identifiers.org/registry/caps" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/fcb" - }, + "@value": "regulation" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pazar.info/" + }, + "https://bioregistry.io/schema/#0000005": "TF0001053", + "https://bioregistry.io/schema/#0000006": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1", + "https://bioregistry.io/schema/#0000008": "^TF\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6098-6412" + }, + "https://bioregistry.io/schema/#0000024": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=TF0001053" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pazar" + } + }, + { + "@id": "https://orcid.org/0000-0001-9504-189X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Issaku Yamada" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "issaku@noguchi.or.jp" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/myco.lepra", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/doap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ewilderj/doap" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Description of a Project" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/subtiwiki" + "@value": "metadata" }, { - "@id": "https://registry.identifiers.org/registry/mw.project" + "@value": "semantic web" }, { - "@id": "https://registry.identifiers.org/registry/jaxmice" - }, + "@value": "rdf" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/ewilderj/doap/wiki" + }, + "https://bioregistry.io/schema/#0000005": "Project", + "https://bioregistry.io/schema/#0000006": "http://usefulinc.com/ns/doap#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N58611fcf82194703923654500373e06f" + }, + "https://bioregistry.io/schema/#0000024": "http://usefulinc.com/ns/doap#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://usefulinc.com/ns/doap#Project" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "doap" + } + }, + { + "@id": "_:N58611fcf82194703923654500373e06f", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Edd Wilder-James" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "edd@usefulinc.com" + } + }, + { + "@id": "https://bioregistry.io/registry/morpheus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Morpheus model repository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/morpheus" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://morpheus.gitlab.io/" + }, + "https://bioregistry.io/schema/#0000005": "M0001", + "https://bioregistry.io/schema/#0000006": "https://morpheus.gitlab.io/models/$1", + "https://bioregistry.io/schema/#0000008": "^M[0-9]{4,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://morpheus.gitlab.io/models/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://morpheus.gitlab.io/models/M0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "morpheus" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3640", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mzspec", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/adw", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Animal natural history and life history" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/civic.vgid" + "@id": "https://fairsharing.org/FAIRsharing.t9fvdn" }, { - "@id": "https://registry.identifiers.org/registry/erv" + "@id": "https://registry.identifiers.org/registry/adw" }, { - "@id": "https://registry.identifiers.org/registry/pgx" + "@id": "http://aber-owl.net/ontology/ADW" }, { - "@id": "https://registry.identifiers.org/registry/broad" + "@id": "https://bioregistry.io/metaregistry/biocontext/ADW" }, { - "@id": "https://registry.identifiers.org/registry/rhea" + "@id": "https://bioportal.bioontology.org/ontologies/ADW" }, { - "@id": "https://registry.identifiers.org/registry/mmp.fun" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw" }, { - "@id": "https://registry.identifiers.org/registry/ttd.target" - }, + "@id": "https://www.obofoundry.org/ontology/adw" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/vbrc" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/bugbase.expt" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase" + "@value": "anatomy" }, { - "@id": "https://registry.identifiers.org/registry/mimodb" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.animaldiversity.org" + }, + "https://bioregistry.io/schema/#0000005": "Lycalopex_vetulus", + "https://bioregistry.io/schema/#0000006": "https://animaldiversity.org/accounts/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z_a-z]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ADW/2/adw.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N43fb146bdd224e42a916a4eab2535bdc" + }, + "https://bioregistry.io/schema/#0000024": "https://animaldiversity.org/accounts/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://animaldiversity.org/accounts/Lycalopex_vetulus" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "adw" + } + }, + { + "@id": "_:N43fb146bdd224e42a916a4eab2535bdc", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Animal Diversity Web technical staff" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "adw_geeks@umich.edu" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xf30yc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/CEPH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MMRRC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0001-7941-2961", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Leigh Carmody" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Leigh.Carmody@jax.org" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2084", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/molmedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3345", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ncbidrs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Data Repository Service" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ncbidrs" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "72ff6ff882ec447f12df018e6183de59", + "https://bioregistry.io/schema/#0000006": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{32}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/72ff6ff882ec447f12df018e6183de59" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ncbidrs" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/agrovoc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Agronomy Vocabulary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord" + "@id": "http://www.wikidata.org/entity/P8061" }, { - "@id": "https://registry.identifiers.org/registry/mirtarbase" + "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC" }, { - "@id": "https://registry.identifiers.org/registry/vegbank" + "@id": "https://bartoc.org/en/node/305" }, { - "@id": "https://registry.identifiers.org/registry/p3db.site" + "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC" }, { - "@id": "https://registry.identifiers.org/registry/repeatsdb.protein" - }, + "@id": "https://fairsharing.org/FAIRsharing.anpj91" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/pmr" + "@value": "botany" }, { - "@id": "https://registry.identifiers.org/registry/smart" + "@value": "forest management" }, { - "@id": "https://registry.identifiers.org/registry/gmd" + "@value": "fisheries science" }, { - "@id": "https://registry.identifiers.org/registry/ena.embl" + "@value": "nutritional science" }, { - "@id": "https://registry.identifiers.org/registry/doqcs.model" + "@value": "data management" }, { - "@id": "https://registry.identifiers.org/registry/isni" + "@value": "environmental science" }, { - "@id": "https://registry.identifiers.org/registry/ark" - }, + "@value": "agriculture" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://data.apps.fao.org/catalog/organization/agrovoc" + }, + "https://bioregistry.io/schema/#0000005": "2842", + "https://bioregistry.io/schema/#0000006": "http://aims.fao.org/aos/agrovoc/c_$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N092d4e4b63024aba99662c1cea59992d" + }, + "https://bioregistry.io/schema/#0000024": "http://aims.fao.org/aos/agrovoc/c_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://aims.fao.org/aos/agrovoc/c_2842" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "agrovoc" + } + }, + { + "@id": "_:N092d4e4b63024aba99662c1cea59992d", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AGROVOC Team" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "agrovoc@fao.org" + } + }, + { + "@id": "https://bioregistry.io/registry/viralzone", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ViralZone" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/dg.6vts" + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE" }, { - "@id": "https://registry.identifiers.org/registry/gmd.gcms" + "@id": "https://registry.identifiers.org/registry/viralzone" }, { - "@id": "https://registry.identifiers.org/registry/clinvar" + "@id": "https://fairsharing.org/FAIRsharing.tppk10" }, { - "@id": "https://registry.identifiers.org/registry/sio" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone" }, { - "@id": "https://registry.identifiers.org/registry/ligandbox" + "@id": "https://www.re3data.org/repository/r3d100013314" }, { - "@id": "https://registry.identifiers.org/registry/cst.ab" + "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ" }, { - "@id": "https://registry.identifiers.org/registry/pdb.ligand" - }, + "@id": "https://registry.bio2kg.org/resource/vz" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/taxonomy" + "@value": "molecular biology" }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.disease" + "@value": "epidemiology" }, { - "@id": "https://registry.identifiers.org/registry/gnpis" + "@value": "virology" }, { - "@id": "https://registry.identifiers.org/registry/cath.domain" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/intact" - }, + "@value": "virus" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.expasy.org/viralzone/" + }, + "https://bioregistry.io/schema/#0000005": "992", + "https://bioregistry.io/schema/#0000006": "https://viralzone.expasy.org/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8528-090X" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "vz" + }, + "https://bioregistry.io/schema/#0000024": "https://viralzone.expasy.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://viralzone.expasy.org/992" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "viralzone" + } + }, + { + "@id": "https://registry.identifiers.org/registry/glida.gpcr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010266", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/collection/0000002", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) in BioContext." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.identifiers.org/registry/asap" + "@id": "https://bioregistry.io/registry/dcterms" }, { - "@id": "https://registry.identifiers.org/registry/p3db.protein" + "@id": "https://bioregistry.io/registry/foaf" }, { - "@id": "https://registry.identifiers.org/registry/panther.family" + "@id": "https://bioregistry.io/registry/idot" }, { - "@id": "https://registry.identifiers.org/registry/tgd" + "@id": "https://bioregistry.io/registry/sh" }, { - "@id": "https://registry.identifiers.org/registry/arrayexpress.platform" + "@id": "https://bioregistry.io/registry/faldo" }, { - "@id": "https://registry.identifiers.org/registry/crisprdb" + "@id": "https://bioregistry.io/registry/vann" }, { - "@id": "https://registry.identifiers.org/registry/inchikey" + "@id": "https://bioregistry.io/registry/qudt" }, { - "@id": "https://registry.identifiers.org/registry/dlxc" + "@id": "https://bioregistry.io/registry/swrl" }, { - "@id": "https://registry.identifiers.org/registry/pr" + "@id": "https://bioregistry.io/registry/xsd" }, { - "@id": "https://registry.identifiers.org/registry/cgd" + "@id": "https://bioregistry.io/registry/rdfs" }, { - "@id": "https://registry.identifiers.org/registry/glytoucan" + "@id": "https://bioregistry.io/registry/qb" }, { - "@id": "https://registry.identifiers.org/registry/aspgd.protein" + "@id": "https://bioregistry.io/registry/ac" }, { - "@id": "https://registry.identifiers.org/registry/datanator.reaction" + "@id": "https://bioregistry.io/registry/pav" }, { - "@id": "https://registry.identifiers.org/registry/mmp.db" + "@id": "https://bioregistry.io/registry/oa" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction" + "@id": "https://bioregistry.io/registry/dcat" }, { - "@id": "https://registry.identifiers.org/registry/mw.study" + "@id": "https://bioregistry.io/registry/dctypes" }, { - "@id": "https://registry.identifiers.org/registry/drugbankv4.target" + "@id": "https://bioregistry.io/registry/shex" }, { - "@id": "https://registry.identifiers.org/registry/wikipedia.en" + "@id": "https://bioregistry.io/registry/void" }, { - "@id": "https://registry.identifiers.org/registry/oridb.schizo" + "@id": "https://bioregistry.io/registry/skosxl" }, { - "@id": "https://registry.identifiers.org/registry/ncbigene" + "@id": "https://bioregistry.io/registry/oboinowl" }, { - "@id": "https://registry.identifiers.org/registry/fb" + "@id": "https://bioregistry.io/registry/owl" }, { - "@id": "https://registry.identifiers.org/registry/oma.hog" + "@id": "https://bioregistry.io/registry/rdf" }, { - "@id": "https://registry.identifiers.org/registry/mo" + "@id": "https://bioregistry.io/registry/oslc" }, { - "@id": "https://registry.identifiers.org/registry/biominder" + "@id": "https://bioregistry.io/registry/schema" }, { - "@id": "https://registry.identifiers.org/registry/rapdb.transcript" + "@id": "https://bioregistry.io/registry/dc" }, { - "@id": "https://registry.identifiers.org/registry/mmp.ref" + "@id": "https://bioregistry.io/registry/bibo" }, { - "@id": "https://registry.identifiers.org/registry/iuphar.ligand" + "@id": "https://bioregistry.io/registry/skos" }, { - "@id": "https://registry.identifiers.org/registry/mmrrc" - }, + "@id": "https://bioregistry.io/registry/prov" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Semantic Web Context" + } + }, + { + "@id": "https://bioregistry.io/registry/wb.rnai", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "WormBase RNAi" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/sgn" + "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI" }, { - "@id": "https://registry.identifiers.org/registry/ecoliwiki" + "@id": "https://registry.identifiers.org/registry/wb.rnai" }, { - "@id": "https://registry.identifiers.org/registry/dbest" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.wormbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "WBRNAi00086878", + "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/species/c_elegans/rnai/$1", + "https://bioregistry.io/schema/#0000008": "^WBRNAi\\d{8}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/species/c_elegans/rnai/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.wormbase.org/species/c_elegans/rnai/WBRNAi00086878" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wb.rnai" + } + }, + { + "@id": "http://aber-owl.net/ontology/VSAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ensembl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7g1bzj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/molmovdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Macromolecular Movements" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/molmovdb" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/cdpd" + "@value": "small molecule" }, { - "@id": "https://registry.identifiers.org/registry/pmr.workspace" + "@value": "classification" }, { - "@id": "https://registry.identifiers.org/registry/chemidplus" + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/opb" - }, + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioinfo.mbb.yale.edu/MolMovDB/" + }, + "https://bioregistry.io/schema/#0000005": "f665230-5267", + "https://bioregistry.io/schema/#0000006": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=f665230-5267" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "molmovdb" + } + }, + { + "@id": "http://www.wikidata.org/entity/P231", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FLOPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/superfamily", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/bcio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Behaviour Change Intervention Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/oryzabase.gene" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio" }, { - "@id": "https://registry.identifiers.org/registry/funcbase.human" + "@id": "https://bioportal.bioontology.org/ontologies/BCI-O" }, { - "@id": "https://registry.identifiers.org/registry/uspto" - }, + "@id": "http://aber-owl.net/ontology/BCI-O" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.humanbehaviourchange.org/" + }, + "https://bioregistry.io/schema/#0000005": "040000", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/BCI-ontology#$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://humanbehaviourchange.org/ontology/bcio.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7203-8399" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/BCI-ontology#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/BCI-ontology#040000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bcio" + } + }, + { + "@id": "http://aber-owl.net/ontology/CHEMINF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/sphn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Swiss Personalized Health Network Schema" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.sphn.ch" + }, + "https://bioregistry.io/schema/#0000005": "Allergy", + "https://bioregistry.io/schema/#0000006": "https://biomedit.ch/rdf/sphn-ontology/sphn#$1", + "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/raw/master/rdf_schema/sphn_rdf_schema.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3248-7899" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://biomedit.ch/rdf/sphn-ontology/sphn#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biomedit.ch/rdf/sphn-ontology/sphn#Allergy" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sphn" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IPR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/lipro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology representation of the LIPIDMAPS nomenclature classification.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lipid Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/uberon" + "@id": "https://www.obofoundry.org/ontology/lipro" }, { - "@id": "https://registry.identifiers.org/registry/ligandexpo" + "@id": "http://aber-owl.net/ontology/LIPRO" }, { - "@id": "https://registry.identifiers.org/registry/cpc" + "@id": "https://bioportal.bioontology.org/ontologies/LIPRO" }, { - "@id": "https://registry.identifiers.org/registry/foodb.compound" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPRO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/ctd.gene" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/treefam" - }, + "@value": "obo" + } + ], + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LIPRO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/LIPRO/4/lipro.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4004-6479" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LIPRO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "lipro" + } + }, + { + "@id": "https://bioregistry.io/registry/jgi.proposal", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifiers for proposals/projects at the Joint Genome Institute", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Joint Genome Institute Proposals" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://genome.jgi.doe.gov/portal/" + }, + "https://bioregistry.io/schema/#0000005": "502930", + "https://bioregistry.io/schema/#0000006": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8489-208X" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=502930" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "jgi.proposal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/biomodels", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/so", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/transportdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pathwaycommons", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/hoelzel", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hölzel Diagnostika" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/metanetx.compartment" + "@value": "biologics" }, { - "@id": "https://registry.identifiers.org/registry/civic.sid" + "@value": "proteins" }, { - "@id": "https://registry.identifiers.org/registry/corrdb" + "@value": "vendor" }, { - "@id": "https://registry.identifiers.org/registry/ird.segment" + "@value": "antibodies" }, { - "@id": "https://registry.identifiers.org/registry/mlc" + "@value": "life sciences" }, { - "@id": "https://registry.identifiers.org/registry/obi" + "@value": "elisa-kits" }, { - "@id": "https://registry.identifiers.org/registry/dictybase.gene" + "@value": "assays" }, { - "@id": "https://registry.identifiers.org/registry/hinv.protein" - }, + "@value": "inhibitors" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.hoelzel-biotech.com" + }, + "https://bioregistry.io/schema/#0000005": "40592-R001-100", + "https://bioregistry.io/schema/#0000006": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0009-0009-3816-8777" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "hölzel" + }, + "https://bioregistry.io/schema/#0000024": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=40592-R001-100" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hoelzel" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dk451a", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/opmi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OPMI/opmi" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of Precision Medicine and Investigation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/foodon" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi" }, { - "@id": "https://registry.identifiers.org/registry/assembly" + "@id": "http://aber-owl.net/ontology/OPMI" }, { - "@id": "https://registry.identifiers.org/registry/drugcentral" + "@id": "https://www.obofoundry.org/ontology/opmi" }, { - "@id": "https://registry.identifiers.org/registry/brenda" + "@id": "http://www.ontobee.org/ontology/OPMI" }, { - "@id": "https://registry.identifiers.org/registry/neurovault.collection" + "@id": "https://fairsharing.org/FAIRsharing.d2d84f" }, { - "@id": "https://registry.identifiers.org/registry/aop.stressor" - }, + "@id": "https://bioportal.bioontology.org/ontologies/OPMI" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/dbprobe" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/civic.tid" + "@value": "clinical studies" }, { - "@id": "https://registry.identifiers.org/registry/oci" + "@value": "obo" }, { - "@id": "https://registry.identifiers.org/registry/sitex" - }, + "@value": "omics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/OPMI/opmi" + }, + "https://bioregistry.io/schema/#0000005": "0000101", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OPMI_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/opmi.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://registry.identifiers.org/registry/niaest" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://registry.identifiers.org/registry/metlin" - }, + "@id": "https://bioregistry.io/registry/labo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OPMI_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OPMI_0000101" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "opmi" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011865", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/protonet.proteincard", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ProtoNet ProteinCard" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/biolink" + "@id": "https://registry.bio2kg.org/resource/protonet.proteincard" }, { - "@id": "https://registry.identifiers.org/registry/kegg.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.PROTEINCARD" }, { - "@id": "https://registry.identifiers.org/registry/chemdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard" }, { - "@id": "https://registry.identifiers.org/registry/hogenom" - }, + "@id": "https://registry.identifiers.org/registry/protonet.proteincard" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.protonet.cs.huji.ac.il/" + }, + "https://bioregistry.io/schema/#0000005": "16941567", + "https://bioregistry.io/schema/#0000006": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=16941567" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "protonet.proteincard" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/roleo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/mamo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "http://sourceforge.net/p/mamo-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mathematical modeling ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/funcbase.fly" + "@id": "https://fairsharing.org/FAIRsharing.kbz5jh" }, { - "@id": "https://registry.identifiers.org/registry/mgnify.proj" + "@id": "http://aber-owl.net/ontology/MAMO" }, { - "@id": "https://registry.identifiers.org/registry/fbol" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo" }, { - "@id": "https://registry.identifiers.org/registry/biocatalogue.service" + "@id": "https://bioportal.bioontology.org/ontologies/MAMO" }, { - "@id": "https://registry.identifiers.org/registry/seed.compound" + "@id": "https://registry.identifiers.org/registry/mamo" }, { - "@id": "https://registry.identifiers.org/registry/seed" + "@id": "https://www.obofoundry.org/ontology/mamo" }, { - "@id": "https://registry.identifiers.org/registry/imgt.ligm" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAMO" }, { - "@id": "https://registry.identifiers.org/registry/medgen" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo" }, { - "@id": "https://registry.identifiers.org/registry/exac.variant" - }, + "@id": "http://www.ontobee.org/ontology/MAMO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/ega.study" + "@value": "systems biology" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.rule" + "@value": "mathematics" }, { - "@id": "https://registry.identifiers.org/registry/topfind" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/tigrfam" + "@value": "computational biology" }, { - "@id": "https://registry.identifiers.org/registry/biomodels.teddy" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sourceforge.net/p/mamo-ontology/wiki/Home/" + }, + "https://bioregistry.io/schema/#0000005": "0000026", + "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mamo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6309-7327" + }, + "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_0000026" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mamo" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ONTONEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/chemdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ChemDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/tarbase" + "@id": "https://fairsharing.org/FAIRsharing.dstf7h" }, { - "@id": "https://registry.identifiers.org/registry/lincs.cell" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB" }, { - "@id": "https://registry.identifiers.org/registry/phytozome.locus" + "@id": "https://registry.bio2kg.org/resource/chemdb" }, { - "@id": "https://registry.identifiers.org/registry/ido" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb" }, { - "@id": "https://registry.identifiers.org/registry/mp" - }, + "@id": "https://registry.identifiers.org/registry/chemdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/ngl" + "@value": "biochemistry" }, { - "@id": "https://registry.identifiers.org/registry/bitterdb.cpd" + "@value": "small molecule" }, { - "@id": "https://registry.identifiers.org/registry/homd.seq" + "@value": "systems biology" }, { - "@id": "https://registry.identifiers.org/registry/spdx" + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/epd" + "@value": "preclinical studies" }, { - "@id": "https://registry.identifiers.org/registry/datanator.gene" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://cdb.ics.uci.edu/" + }, + "https://bioregistry.io/schema/#0000005": "3966782", + "https://bioregistry.io/schema/#0000006": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=3966782" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "chemdb" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pbbnwa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/ngbo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Dalalghamdi/NGBO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Next Generation Biobanking Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bgee.organ" + "@id": "https://bioportal.bioontology.org/ontologies/NGBO" }, { - "@id": "https://registry.identifiers.org/registry/maxo" + "@id": "https://www.obofoundry.org/ontology/ngbo" }, { - "@id": "https://registry.identifiers.org/registry/hinv.transcript" + "@id": "http://www.ontobee.org/ontology/NGBO" }, { - "@id": "https://registry.identifiers.org/registry/odc.tbi" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo" }, { - "@id": "https://registry.identifiers.org/registry/ncit" - }, + "@id": "http://aber-owl.net/ontology/NGBO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/re3data" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.reaction" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/Dalalghamdi/NGBO" + }, + "https://bioregistry.io/schema/#0000005": "6000122", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NGBO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ngbo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2801-0767" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NGBO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/NGBO_6000122" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ngbo" + } + }, + { + "@id": "https://bioregistry.io/registry/co_343", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "version 2019 - pvs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yam ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/pdb-ccd" + "@id": "https://cropontology.org/ontology/CO_343" }, { - "@id": "https://registry.identifiers.org/registry/identifiers.namespace" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_343" }, { - "@id": "https://registry.identifiers.org/registry/sisu" + "@id": "https://fairsharing.org/FAIRsharing.7e9cff" }, { - "@id": "https://registry.identifiers.org/registry/protonet.proteincard" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/giardiadb" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/cryptodb" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/begdb" + "@value": "agriculture" }, { - "@id": "https://registry.identifiers.org/registry/morpheus" - }, + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_343/Yam" + }, + "https://bioregistry.io/schema/#0000005": "0100010", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_343:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_343/Yam/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N2b6feb67a2df4a55a5abd72287a761f9" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_343:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_343:0100010" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_343" + } + }, + { + "@id": "_:N2b6feb67a2df4a55a5abd72287a761f9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.nj16g", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P235", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bcjrnq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/unigene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/erv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Endogenous Retrovirus Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/hgnc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv" }, { - "@id": "https://registry.identifiers.org/registry/hdr" + "@id": "https://bioregistry.io/metaregistry/biocontext/ERV" }, { - "@id": "https://registry.identifiers.org/registry/encode" - }, + "@id": "https://registry.identifiers.org/registry/erv" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://herv.img.cas.cz/" + }, + "https://bioregistry.io/schema/#0000005": "THE1B", + "https://bioregistry.io/schema/#0000006": "https://herv.img.cas.cz/s/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\-\\_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://herv.img.cas.cz/s/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://herv.img.cas.cz/s/THE1B" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "erv" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/drugbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://edamontology.org/data_2632", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/discoverx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DiscoverX cell line products" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.discoverx.com/products-applications/cell-lines" + }, + "https://bioregistry.io/schema/#0000005": "95-0166C6", + "https://bioregistry.io/schema/#0000006": "https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/discoverx:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.discoverx.com/searchproduct?searchtext=95-0166C6&searchmode=exact" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "discoverx" + } + }, + { + "@id": "https://registry.identifiers.org/registry/empiar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DBPROBE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/pubchem", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.identifiers.org/registry/tissuelist" + "@id": "https://bioregistry.io/registry/pubchem.substance" }, { - "@id": "https://registry.identifiers.org/registry/amoebadb" + "@id": "https://bioregistry.io/registry/pubchem.element" }, { - "@id": "https://registry.identifiers.org/registry/hinv.locus" + "@id": "https://bioregistry.io/registry/pubchem.bioassay" }, { - "@id": "https://registry.identifiers.org/registry/apd" + "@id": "https://bioregistry.io/registry/pubchem.compound" }, { - "@id": "https://registry.identifiers.org/registry/biomodels.kisao" + "@id": "https://bioregistry.io/registry/pubchem.classification" }, { - "@id": "https://registry.identifiers.org/registry/antibodyregistry" - }, + "@id": "https://bioregistry.io/registry/pubchem.cell" + } + ] + }, + { + "@id": "http://www.ontobee.org/ontology/PdumDv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://www.wikidata.org/entity/P10538", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/conference", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Conference Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.scholarlydata.org/ontology/doc/" + }, + "https://bioregistry.io/schema/#0000005": "isDocumentRelatedTo", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#isDocumentRelatedTo" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "conference" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/chemidplus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.68b03f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/3dmet", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/WB_REF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BCI-O", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/coconut", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "COlleCtion of Open Natural ProdUcTs" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/gmd.analyte" + "@value": "natural producs" }, { - "@id": "https://registry.identifiers.org/registry/hmdb" + "@value": "chemistry" }, { - "@id": "https://registry.identifiers.org/registry/fma" - }, + "@value": "organic chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://coconut.naturalproducts.net" + }, + "https://bioregistry.io/schema/#0000005": "CNP0171505", + "https://bioregistry.io/schema/#0000006": "https://coconut.naturalproducts.net/compound/coconut_id/$1", + "https://bioregistry.io/schema/#0000008": "^CNP\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://coconut.naturalproducts.net/compound/coconut_id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://coconut.naturalproducts.net/compound/coconut_id/CNP0171505" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "coconut" + } + }, + { + "@id": "https://registry.identifiers.org/registry/atcc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/hcv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bartoc.org/en/node/671", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/registry/co_335", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CIAT Common bean trait dictionary - version August 2014", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Common Bean ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bacmap.biog" + "@id": "https://fairsharing.org/FAIRsharing.a14123" }, { - "@id": "https://registry.identifiers.org/registry/igsn" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_335" }, { - "@id": "https://registry.identifiers.org/registry/toxoplasma" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335" }, { - "@id": "https://registry.identifiers.org/registry/hgnc.symbol" - }, + "@id": "https://cropontology.org/ontology/CO_335" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/vbase2" + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/myco.marinum" + "@value": "agriculture" }, { - "@id": "https://registry.identifiers.org/registry/refseq" - }, + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cropontology.org/ontology/CO_335/Common%20Bean" + }, + "https://bioregistry.io/schema/#0000005": "0000189", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_335:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_335/Common%20Bean/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nf607a80abc1c4f09ab04e73093c67475" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_335:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_335:0000189" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_335" + } + }, + { + "@id": "_:Nf607a80abc1c4f09ab04e73093c67475", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/abs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q3b39v", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://edamontology.org/data_2578", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.x56jsy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/lncipedia", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A comprehensive compendium of human long non-coding RNAs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LNCipedia" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.84c1a7" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://lncipedia.org" + }, + "https://bioregistry.io/schema/#0000005": "SNHG3", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "lncipedia" + } + }, + { + "@id": "http://www.wikidata.org/entity/P591", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://edamontology.org/data_3856", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://orcid.org/0000-0002-5892-6506", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nathan Baker" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nathan.baker@pnnl.gov" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5q1p14", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1rj558", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/gfo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "General Formal Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/hgnc.genefamily" + "@id": "http://aber-owl.net/ontology/GFO" }, { - "@id": "https://registry.identifiers.org/registry/protclustdb" + "@id": "https://bioportal.bioontology.org/ontologies/GFO" }, { - "@id": "https://registry.identifiers.org/registry/kegg.pathway" - }, + "@id": "https://fairsharing.org/FAIRsharing.175hsz" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/runbiosimulations" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/eo" + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/edam" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.onto-med.de/ontologies/gfo" + }, + "https://bioregistry.io/schema/#0000005": "projects_to", + "https://bioregistry.io/schema/#0000006": "http://www.onto-med.de/ontologies/gfo.owl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.onto-med.de/ontologies/gfo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N7c0a181c44b94668b383a25b019a1108" + }, + "https://bioregistry.io/schema/#0000024": "http://www.onto-med.de/ontologies/gfo.owl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.onto-med.de/ontologies/gfo.owl#projects_to" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gfo" + } + }, + { + "@id": "_:N7c0a181c44b94668b383a25b019a1108", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Heinrich Herre" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "heinrich.herre@imise.uni-leipzig.de" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/resid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/orthodb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OrthoDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/stap" + "@id": "https://fairsharing.org/FAIRsharing.x989d5" }, { - "@id": "https://registry.identifiers.org/registry/nasc" + "@id": "https://registry.identifiers.org/registry/orthodb" }, { - "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB" }, { - "@id": "https://registry.identifiers.org/registry/jcm" + "@id": "https://registry.bio2kg.org/resource/orthodb" }, { - "@id": "https://registry.identifiers.org/registry/atcvet" + "@id": "https://www.uniprot.org/database/DB-0143" }, { - "@id": "https://registry.identifiers.org/registry/envo" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/metatlas" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/hovergen" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/facebase" + "@value": "protein" }, { - "@id": "https://registry.identifiers.org/registry/ito" - }, + "@value": "eukaryotic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.orthodb.org" + }, + "https://bioregistry.io/schema/#0000005": "Q9P0K8", + "https://bioregistry.io/schema/#0000006": "http://cegg.unige.ch/orthodb/results?searchtext=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://cegg.unige.ch/orthodb/results?searchtext=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://cegg.unige.ch/orthodb/results?searchtext=Q9P0K8" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "orthodb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MICROSPORIDIA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.metagenome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vega", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CARO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/emap.ontology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-4054-1827", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dawood B. Dudekula" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dawood@helix.nih.gov" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/rnavdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RNA Virus Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/rvd" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/gmd.profile" + "@value": "rna" }, { - "@id": "https://registry.identifiers.org/registry/icdc" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://virus.zoo.ox.ac.uk/rnavirusdb/" + }, + "https://bioregistry.io/schema/#0000005": "164750", + "https://bioregistry.io/schema/#0000006": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=164750" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rnavdb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bioportal", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "http://github.com/ncbo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioPortal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/hpscreg" + "@id": "https://registry.identifiers.org/registry/bioportal" }, { - "@id": "https://registry.identifiers.org/registry/planttfdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal" }, { - "@id": "https://registry.identifiers.org/registry/pmap.substratedb" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL" }, { - "@id": "https://registry.identifiers.org/registry/nmrshiftdb2" + "@id": "https://registry.bio2kg.org/resource/bioportal" }, { - "@id": "https://registry.identifiers.org/registry/utrdb" + "@id": "https://www.re3data.org/repository/r3d100012344" }, { - "@id": "https://registry.identifiers.org/registry/phosphopoint.protein" - }, + "@id": "https://fairsharing.org/FAIRsharing.4m97ah" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/tair.locus" + "@value": "life science" }, { - "@id": "https://registry.identifiers.org/registry/coriell" + "@value": "ontology and terminology" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.ec" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioportal.bioontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "1046", + "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/$1", + "https://bioregistry.io/schema/#0000008": "^(\\d+)|(\\w+)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6875-5360" + }, + "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bioportal.bioontology.org/ontologies/1046" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/cpc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cooperative Patent Classification" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/pharmgkb.drug" + "@id": "https://fairsharing.org/FAIRsharing.e08886" }, { - "@id": "https://registry.identifiers.org/registry/sedml.format" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc" }, { - "@id": "https://registry.identifiers.org/registry/knapsack" + "@id": "https://registry.identifiers.org/registry/cpc" }, { - "@id": "https://registry.identifiers.org/registry/ricegap" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/CPC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/aop.relationships" + "@value": "earth science" }, { - "@id": "https://registry.identifiers.org/registry/merops.inhibitor" + "@value": "atmospheric science" }, { - "@id": "https://registry.identifiers.org/registry/rism" + "@value": "geodesy" }, { - "@id": "https://registry.identifiers.org/registry/phosphosite.residue" + "@value": "geography" }, { - "@id": "https://registry.identifiers.org/registry/cco" + "@value": "hydrogeology" }, { - "@id": "https://registry.identifiers.org/registry/pfam" - }, + "@value": "meteorology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://worldwide.espacenet.com/classification" + }, + "https://bioregistry.io/schema/#0000005": "A01M1/026", + "https://bioregistry.io/schema/#0000006": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1", + "https://bioregistry.io/schema/#0000008": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=A01M1/026" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cpc" + } + }, + { + "@id": "https://bioregistry.io/registry/uniprot.isoform", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.identifiers.org/registry/glida.gpcr" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://registry.identifiers.org/registry/pombase" - }, + "@id": "https://bioregistry.io/registry/uniprot" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UniProt Isoform" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/bioproject" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM" }, { - "@id": "https://registry.identifiers.org/registry/dg.4dfc" + "@id": "https://registry.identifiers.org/registry/uniprot.isoform" }, { - "@id": "https://registry.identifiers.org/registry/adw" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM" }, { - "@id": "https://registry.identifiers.org/registry/aop" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.uniprot.org/" + }, + "https://bioregistry.io/schema/#0000005": "Q5BJF6-3", + "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/isoforms/$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "UPISO" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/isoforms/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.uniprot.org/isoforms/Q5BJF6-3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uniprot.isoform" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012575", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/vandf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Veterans Administration National Drug File" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/cstr" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF" }, { - "@id": "https://registry.identifiers.org/registry/umbbd.enzyme" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229" }, { - "@id": "https://registry.identifiers.org/registry/elm" + "@id": "https://fairsharing.org/FAIRsharing.xn3pb3" }, { - "@id": "https://registry.identifiers.org/registry/massive" + "@id": "http://aber-owl.net/ontology/VANDF" }, { - "@id": "https://registry.identifiers.org/registry/lipidmaps" - }, + "@id": "https://bioportal.bioontology.org/ontologies/VANDF" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/worms" + "@value": "pharmacology" }, { - "@id": "https://registry.identifiers.org/registry/rrid" + "@value": "biomedical science" }, { - "@id": "https://registry.identifiers.org/registry/grid" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/VANDF" + }, + "https://bioregistry.io/schema/#0000005": "4019477", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/VANDF/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N14dff4050e56443cbb5c64756bfee9df" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/VANDF/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.bioontology.org/ontology/VANDF/4019477" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "vandf" + } + }, + { + "@id": "_:N14dff4050e56443cbb5c64756bfee9df", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael Lincoln" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "michael.lincoln@med.va.gov" + } + }, + { + "@id": "https://bioregistry.io/registry/nextprot", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "nextProt" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/cattleqtldb" + "@id": "https://www.uniprot.org/database/DB-0161" }, { - "@id": "https://registry.identifiers.org/registry/dip" + "@id": "https://fairsharing.org/FAIRsharing.62evqh" }, { - "@id": "https://registry.identifiers.org/registry/orthodb" + "@id": "https://registry.identifiers.org/registry/nextprot" }, { - "@id": "https://registry.identifiers.org/registry/disprot" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot" }, { - "@id": "https://registry.identifiers.org/registry/uniref" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/bykdb" + "@value": "proteomics" }, { - "@id": "https://registry.identifiers.org/registry/dashr" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nextprot.org/" + }, + "https://bioregistry.io/schema/#0000005": "NX_O00165", + "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/db/entry/$1", + "https://bioregistry.io/schema/#0000008": "^NX_\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7961-6091" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NXP" + }, + "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/db/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.nextprot.org/db/entry/NX_O00165" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nextprot" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.we2r5a", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/micro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/pgx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Progenetix" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/pirsf" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Progenetix" }, { - "@id": "https://registry.identifiers.org/registry/dg.5b0d" + "@id": "https://bioregistry.io/metaregistry/biocontext/PGX" }, { - "@id": "https://registry.identifiers.org/registry/tol" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx" }, { - "@id": "https://registry.identifiers.org/registry/sgd" + "@id": "https://registry.identifiers.org/registry/pgx" }, { - "@id": "https://registry.identifiers.org/registry/ncbiprotein" + "@id": "https://www.re3data.org/repository/r3d100012820" }, { - "@id": "https://registry.identifiers.org/registry/cadsr" - }, + "@id": "https://fairsharing.org/FAIRsharing.65tdnz" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/fungidb" + "@value": "genomics" }, { - "@id": "https://registry.identifiers.org/registry/yrcpdr" + "@value": "biomedical science" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Identifiers.org" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://identifiers.org" + "@id": "https://progenetix.org/" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "chebi" + "https://bioregistry.io/schema/#0000005": "pgxbs-kftva5zv", + "https://bioregistry.io/schema/#0000006": "https://progenetix.org/services/ids/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9903-4248" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://registry.identifiers.org/registry/$1" + "https://bioregistry.io/schema/#0000023": { + "@value": "Progenetix" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "https://identifiers.org/$1:$2" + "https://bioregistry.io/schema/#0000024": "https://progenetix.org/services/ids/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://progenetix.org/services/ids/pgxbs-kftva5zv" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8479-0262" + "https://bioregistry.io/schema/#0000029": { + "@value": "pgx" + } + }, + { + "@id": "https://registry.identifiers.org/registry/storedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-5831-7439", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Doug Howe" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dhowe@zfin.org" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010539", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0156", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MODELDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cubedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/oid", + "@id": "https://bioregistry.io/registry/inaturalist.taxon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes.", + "http://purl.org/dc/terms/description": "Identifier for a species in iNaturalist", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ISO Object Identifier" + "@value": "iNaturalist Taxonomy" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P3151" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/oid" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.oid-info.com/introduction.htm" + "@id": "https://www.inaturalist.org/taxa" }, - "https://bioregistry.io/schema/#0000005": "2.16.840", - "https://bioregistry.io/schema/#0000006": "http://oid-info.com/get/$1", - "https://bioregistry.io/schema/#0000008": "^[\\d.]+$", + "https://bioregistry.io/schema/#0000005": "21723", + "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/taxa/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://oid-info.com/get/", + "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/taxa/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://oid-info.com/get/2.16.840" + "@id": "https://www.inaturalist.org/taxa/21723" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oid" + "@value": "inaturalist.taxon" } }, { - "@id": "https://bioregistry.io/registry/vac", + "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/gdsc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vaccine Adjuvant Compendium (VAC) was established in 2020 by the NIAID Division of Allergy, Immunology, and Transplantation to foster collaborations between NIAID-supported adjuvant researchers and the broader scientific community. The VAC displays adjuvant characteristics or metadata defined through NIAID-supported adjuvant studies to help vaccine developers identify suitable adjuvants for various vaccine indications, including immune-mediated and infectious diseases. In addition, the VAC welcomes the inclusion of adjuvant metadata generated by other research programs.", + "http://purl.org/dc/terms/description": "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vaccine Adjuvant Compendium" + "@value": "Genomics of Drug Sensitivity in Cancer" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "immunology" + "@id": "https://registry.identifiers.org/registry/gdsc" }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc" }, { - "@value": "vaccines" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://vac.niaid.nih.gov" + "@id": "https://www.cancerrxgene.org" }, - "https://bioregistry.io/schema/#0000005": "15", - "https://bioregistry.io/schema/#0000006": "https://vac.niaid.nih.gov/view?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "1242", + "https://bioregistry.io/schema/#0000006": "https://www.cancerrxgene.org/translation/Drug/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://vac.niaid.nih.gov/view?id=", + "https://bioregistry.io/schema/#0000024": "https://www.cancerrxgene.org/translation/Drug/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://vac.niaid.nih.gov/view?id=15" + "@id": "https://www.cancerrxgene.org/translation/Drug/1242" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vac" + "@value": "gdsc" } }, { - "@id": "https://www.obofoundry.org/ontology/maxo", + "@id": "https://orcid.org/0000-0001-8034-7685", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stephen Fisher" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "safisher@upenn.edu" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/imgt.ligm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene", + "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay", + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/sgd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/unists", + "@id": "https://registry.identifiers.org/registry/panther.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/swh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences.", + "http://purl.org/dc/terms/description": "Software Heritage is the universal archive of software source code.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Sequence Tagged Sites" + "@value": "Software Heritage" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists" - }, - { - "@id": "https://registry.bio2kg.org/resource/unists" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniSTS" - }, - { - "@id": "https://registry.identifiers.org/registry/unists" + "@id": "https://registry.identifiers.org/registry/swh" }, { - "@id": "http://edamontology.org/data_2389" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWH" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=unists" + "@id": "https://archive.softwareheritage.org" }, - "https://bioregistry.io/schema/#0000005": "456789", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d", + "https://bioregistry.io/schema/#0000006": "https://archive.softwareheritage.org/browse/swh:$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=", + "https://bioregistry.io/schema/#0000024": "https://archive.softwareheritage.org/browse/swh:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=456789" + "@id": "https://archive.softwareheritage.org/browse/swh:1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d" }, "https://bioregistry.io/schema/#0000029": { - "@value": "unists" + "@value": "swh" } }, { - "@id": "https://bioregistry.io/registry/clo", + "@id": "https://bioregistry.io/registry/archdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.", + "http://purl.org/dc/terms/description": "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/CLO-Ontology/CLO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Line Ontology" + "@value": "ArchDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/CLO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLO" - }, - { - "@id": "https://registry.bio2kg.org/resource/clo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CLO" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4dvtcz" - }, - { - "@id": "https://www.obofoundry.org/ontology/clo" - }, - { - "@id": "http://www.wikidata.org/entity/P2158" - }, - { - "@id": "https://registry.identifiers.org/registry/clo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo" + "@id": "https://registry.bio2kg.org/resource/archdb" }, { - "@id": "http://www.ontobee.org/ontology/CLO" + "@id": "https://fairsharing.org/FAIRsharing.tp9z4q" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "cell biology" - }, - { - "@value": "obo" + "@value": "classification" }, { - "@value": "ontology" + "@value": "protein" }, { "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.clo-ontology.org" - }, - "https://bioregistry.io/schema/#0000005": "0000091", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/clo.owl" + "@id": "http://sbi.imim.es/archdb" }, + "https://bioregistry.io/schema/#0000005": "39421", + "https://bioregistry.io/schema/#0000006": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/doid" - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/cl" - } - ], - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mco" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2548-641X" + "@id": "https://orcid.org/0000-0002-6421-1080" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "CLO" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLO_", + "https://bioregistry.io/schema/#0000024": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CLO_0000091" + "@id": "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=39421" }, "https://bioregistry.io/schema/#0000029": { - "@value": "clo" + "@value": "archdb" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL", + "@id": "https://bioregistry.io/registry/nsc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Identifier used by the Cancer Chemotherapy National Service Center.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "USA National Service Center Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://semanticscience.org/resource/CHEMINF_000565" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://wiki.nci.nih.gov/display/NCIDTPdata/Chemical+Data" + }, + "https://bioregistry.io/schema/#0000005": "27223", + "https://bioregistry.io/schema/#0000006": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=27223" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nsc" } }, { - "@id": "https://bioregistry.io/registry/odor", + "@id": "https://registry.identifiers.org/registry/rnacentral", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/chemspider", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/hcvdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors", + "http://purl.org/dc/terms/description": "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Odor Molecules DataBase" + "@value": "Hepatitis C Virus Database Project" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor" + "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB" }, { - "@id": "https://registry.identifiers.org/registry/odor" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR" + "@id": "https://registry.bio2kg.org/resource/hcv" + }, + { + "@id": "https://registry.identifiers.org/registry/hcvdb" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "gene" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://senselab.med.yale.edu/OdorDB" + "@id": "http://euhcvdb.ibcp.fr/euHCVdb/" }, - "https://bioregistry.io/schema/#0000005": "74", - "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "M58335", + "https://bioregistry.io/schema/#0000006": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1", + "https://bioregistry.io/schema/#0000008": "^M\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/odor:", + "https://bioregistry.io/schema/#0000024": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://senselab.med.yale.edu/OdorDB/Data/74/?db=5" + "@id": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=M58335" }, "https://bioregistry.io/schema/#0000029": { - "@value": "odor" + "@value": "hcvdb" } }, { - "@id": "https://bioregistry.io/registry/bmrb.restraint", + "@id": "https://bioregistry.io/registry/odrl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.", + "http://purl.org/dc/terms/description": "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NMR Restraints Grid" + "@value": "Open Digital Rights Language Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "nmr" - }, - { - "@value": "spectrometry" - }, - { - "@value": "chemistry" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet" + "@id": "http://www.w3.org/ns/odrl/2" }, - "https://bioregistry.io/schema/#0000005": "28789", - "https://bioregistry.io/schema/#0000006": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "assetConcepts", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/odrl/2/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/odrl/2/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=28789" + "@id": "http://www.w3.org/ns/odrl/2/assetConcepts" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bmrb.restraint" + "@value": "odrl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB", + "@id": "http://aber-owl.net/ontology/PW", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/kegg.reaction", + "@id": "https://bartoc.org/en/node/20434", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "http://aber-owl.net/ontology/PCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ddanat", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/dictyBase/migration-data" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Reaction" + "@value": "Dictyostelium discoideum anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2608" + "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION" + "@id": "https://bioportal.bioontology.org/ontologies/DDANAT" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/DDANAT" }, { - "@id": "https://registry.identifiers.org/registry/kegg.reaction" + "@id": "http://www.ontobee.org/ontology/DDANAT" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.reaction" + "@id": "https://fairsharing.org/FAIRsharing.z656ab" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION" + "@id": "https://registry.bio2kg.org/resource/ddanat" + }, + { + "@id": "https://www.obofoundry.org/ontology/ddanat" + }, + { + "@id": "http://aber-owl.net/ontology/DDANAT" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "enzyme" + "@value": "slime-mould" }, { - "@value": "pathway" + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/kegg/reaction/" + "@id": "http://dictybase.org/" + }, + "https://bioregistry.io/schema/#0000005": "0000006", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DDANAT_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ddanat.owl" }, - "https://bioregistry.io/schema/#0000005": "R00100", - "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^R\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "KEGG_REACTION" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4532-2703" }, - "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DDANAT_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kegg.jp/entry/R00100" + "@id": "http://purl.obolibrary.org/obo/DDANAT_0000006" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.reaction" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010424", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3q3kvn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "ddanat" } }, { - "@id": "https://bioregistry.io/registry/idoo", + "@id": "https://bioregistry.io/registry/co_333", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifiers.org Ontology", + "http://purl.org/dc/terms/description": "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Identifiers.org Ontology" + "@value": "Beet Ontology ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/idoo" + "@id": "https://fairsharing.org/FAIRsharing.af5655" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo" + "@id": "https://cropontology.org/ontology/CO_333" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_333" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "agriculture" + }, + { + "@value": "botany" + }, + { + "@value": "plant breeding" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology" + "@id": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology" + }, + "https://bioregistry.io/schema/#0000005": "3000045", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_333:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_333/Beet%20Ontology/owl" }, - "https://bioregistry.io/schema/#0000005": "DataCollection", - "https://bioregistry.io/schema/#0000006": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N8085bf80823543a98709bfd02a116783" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_333:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#DataCollection" + "@id": "https://cropontology.org/rdf/CO_333:3000045" }, "https://bioregistry.io/schema/#0000029": { - "@value": "idoo" + "@value": "co_333" } }, { - "@id": "https://bioregistry.io/registry/aop.relationships", + "@id": "_:N8085bf80823543a98709bfd02a116783", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/registry/ddinter.interaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", + "http://purl.org/dc/terms/description": "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AOPWiki (Key Event Relationship)" + "@value": "Curated Drug-Drug Interactions Database - Interaction" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships" + "@value": "drug-drug interactions" }, { - "@id": "https://registry.identifiers.org/registry/aop.relationships" + "@value": "relationships" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS" + "@value": "chemistry" + }, + { + "@value": "drugs" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://aopwiki.org/" + "@id": "http://ddinter.scbdd.com" }, - "https://bioregistry.io/schema/#0000005": "5", - "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/relationships/$1", + "https://bioregistry.io/schema/#0000005": "1122888", + "https://bioregistry.io/schema/#0000006": "http://ddinter.scbdd.com/ddinter/interact/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/relationships/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3604-3785" + }, + "https://bioregistry.io/schema/#0000024": "http://ddinter.scbdd.com/ddinter/interact/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://aopwiki.org/relationships/5" + "@id": "http://ddinter.scbdd.com/ddinter/interact/1122888" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aop.relationships" + "@value": "ddinter.interaction" } }, { - "@id": "https://registry.bio2kg.org/resource/tair.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/owl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/MDM", + "@id": "https://bioregistry.io/registry/gmd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0001-9439-5346", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/pdc.study" - }, - { - "@id": "https://bioregistry.io/registry/ccf" - }, - { - "@id": "https://bioregistry.io/registry/bko" - }, - { - "@id": "https://bioregistry.io/registry/uniprot.proteome" - }, - { - "@id": "https://bioregistry.io/registry/biofactoid" - }, - { - "@id": "https://bioregistry.io/registry/rnaloops" - }, - { - "@id": "https://bioregistry.io/registry/casspc" - }, - { - "@id": "https://bioregistry.io/registry/emaps" - }, - { - "@id": "https://bioregistry.io/registry/sharkipedia.trait" - }, - { - "@id": "https://bioregistry.io/registry/zenodo.record" - }, - { - "@id": "https://bioregistry.io/registry/sharkipedia.trend" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Golm Metabolome Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cemo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd" }, { - "@id": "https://bioregistry.io/registry/ribocentre" + "@id": "https://registry.identifiers.org/registry/gmd" }, { - "@id": "https://bioregistry.io/registry/nihreporter.project" + "@id": "https://www.re3data.org/repository/r3d100011046" }, { - "@id": "https://bioregistry.io/registry/sharkipedia.species" + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD" }, { - "@id": "https://bioregistry.io/registry/signor.relation" - }, + "@id": "https://fairsharing.org/FAIRsharing.jykmkw" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/phosphosite.sitegroup" + "@value": "metabolomics" }, { - "@id": "https://bioregistry.io/registry/cordis.project" + "@value": "life science" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Benjamin M. Gyori" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://gmd.mpimp-golm.mpg.de/" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "benjamin_gyori@hms.harvard.edu" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/AGRICOLA_ID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "https://bioregistry.io/schema/#0000005": "68513255-fc44-4041-bc4b-4fd2fae7541d", + "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx", + "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gmd:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://gmd.mpimp-golm.mpg.de/Metabolites/68513255-fc44-4041-bc4b-4fd2fae7541d.aspx" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gmd" } }, { - "@id": "http://www.ontobee.org/ontology/UO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://orcid.org/0000-0003-3389-2191", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/inaturalist.observation" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pierre-Marie Allard" } }, { - "@id": "https://fairsharing.org/FAIRsharing.353yat", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://registry.bio2kg.org/resource/swo", + "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/trnadbce", + "@id": "https://bioregistry.io/registry/vario", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones.", + "http://purl.org/dc/terms/description": "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "tRNA Gene Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/trnadbce" + "@value": "Variation Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genome" + "@id": "https://bioportal.bioontology.org/ontologies/VARIO" }, { - "@value": "gene" + "@id": "https://registry.identifiers.org/registry/vario" }, { - "@value": "rna" + "@id": "http://aber-owl.net/ontology/VARIO" }, { - "@value": "dna" + "@id": "http://agroportal.lirmm.fr/ontologies/VARIO" + }, + { + "@id": "http://www.ontobee.org/ontology/VariO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario" + }, + { + "@id": "https://www.obofoundry.org/ontology/vario" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.65xkbs" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "genetics" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://trna.nagahama-i-bio.ac.jp" + "@id": "http://variationontology.org" }, - "https://bioregistry.io/schema/#0000005": "265912", - "https://bioregistry.io/schema/#0000006": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "0376", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VariO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vario.owl" }, - "https://bioregistry.io/schema/#0000024": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=265912" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9614-7976" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VariO_", "https://bioregistry.io/schema/#0000029": { - "@value": "trnadbce" + "@value": "vario" } }, { - "@id": "https://registry.identifiers.org/registry/vbrc", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bartoc.org/en/node/305", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/identifiers.namespace", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/allergome", + "@id": "https://registry.identifiers.org/registry/idoo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association", + "@id": "https://registry.bio2kg.org/resource/mesh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR", + "@id": "https://www.re3data.org/repository/r3d100010672", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/rapdb.transcript", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.", + "@id": "http://www.ontobee.org/ontology/CHEMINF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rice annotation Project database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB" - }, - { - "@id": "https://registry.identifiers.org/registry/rapdb.transcript" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB" - }, - { - "@id": "https://registry.bio2kg.org/resource/rapdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" - }, - { - "@value": "dna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rapdb.dna.affrc.go.jp/" - }, - "https://bioregistry.io/schema/#0000005": "Os01t0883800-02", - "https://bioregistry.io/schema/#0000006": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1", - "https://bioregistry.io/schema/#0000008": "^Os\\S+t\\d{7}-\\d{2}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=Os01t0883800-02" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rapdb.transcript" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/linguist", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Registry of programming languages for the Linguist program for detecting and highlighting programming languages.", + "@id": "http://aber-owl.net/ontology/OPB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/github/linguist" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Linguist" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/linguist" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/github/linguist" - }, - "https://bioregistry.io/schema/#0000005": "Python", - "https://bioregistry.io/schema/#0000006": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9 +#'*]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#Python" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "linguist" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/wb.rnai", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.", + "@id": "http://aber-owl.net/ontology/ADCAD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WormBase RNAi" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/wb.rnai" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WB.RNAI" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wormbase.org/" - }, - "https://bioregistry.io/schema/#0000005": "WBRNAi00086878", - "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/species/c_elegans/rnai/$1", - "https://bioregistry.io/schema/#0000008": "^WBRNAi\\d{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/species/c_elegans/rnai/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wormbase.org/species/c_elegans/rnai/WBRNAi00086878" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wb.rnai" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.yk1krv", + "@id": "https://fairsharing.org/FAIRsharing.y3scf6", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/anzctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": " The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Australian New Zealand Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://anzctr.org.au" - }, - "https://bioregistry.io/schema/#0000005": "ACTRN12623000498695", - "https://bioregistry.io/schema/#0000006": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1", - "https://bioregistry.io/schema/#0000008": "^ACTRN\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ACTRN" - }, - "https://bioregistry.io/schema/#0000024": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=ACTRN12623000498695" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "anzctr" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/imr", + "@id": "https://bioregistry.io/registry/pharmgkb.pathways", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data.", + "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecule role (INOH Protein name/family name ontology)" + "@value": "PharmGKB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/imr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMR" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS" }, { - "@id": "https://registry.bio2kg.org/resource/imr" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P7001" + }, { - "@value": "protein" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways" }, { - "@value": "small molecule" + "@id": "http://edamontology.org/data_2650" }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.inoh.org" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N402ce698581442dcae89e6da831fb81e" - }, - "https://bioregistry.io/schema/#0000024": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "imr" - } - }, - { - "@id": "_:N402ce698581442dcae89e6da831fb81e", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "INOH curators" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "curator@inoh.org" - } - }, - { - "@id": "https://bioregistry.io/registry/biomodels.vocabulary", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Vocabulary used in the RDF representation of SBML models.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SBML RDF Vocabulary" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY" + "@value": "pharmacogenomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://biomodels.net/rdf/vocabulary.rdf" + "@id": "http://www.pharmgkb.org/" }, - "https://bioregistry.io/schema/#0000005": "rateRule", - "https://bioregistry.io/schema/#0000006": "http://biomodels.net/rdf/vocabulary.rdf#$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z]+$", + "https://bioregistry.io/schema/#0000005": "PA146123006", + "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/pathway/$1", + "https://bioregistry.io/schema/#0000008": "^PA\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://biomodels.net/rdf/vocabulary.rdf#", + "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/pathway/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://biomodels.net/rdf/vocabulary.rdf#rateRule" + "@id": "http://www.pharmgkb.org/pathway/PA146123006" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biomodels.vocabulary" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@value": "pharmgkb.pathways" } }, { - "@id": "https://bioregistry.io/registry/bdgp.insertion", + "@id": "https://bioregistry.io/registry/gold.meta", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element.", + "http://purl.org/dc/terms/description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BDGP insertion DB" + "@value": "GOLD metadata" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion" - }, - { - "@id": "https://registry.identifiers.org/registry/bdgp.insertion" - }, - { - "@id": "https://registry.bio2kg.org/resource/bdgp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@id": "https://registry.identifiers.org/registry/gold.meta" }, { - "@value": "sequence" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.META" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://flypush.imgen.bcm.tmc.edu/pscreen/" + "@id": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi" }, - "https://bioregistry.io/schema/#0000005": "KG09531", - "https://bioregistry.io/schema/#0000006": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "Gm00047", + "https://bioregistry.io/schema/#0000006": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1", + "https://bioregistry.io/schema/#0000008": "^Gm\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=", + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/gold" + }, + "https://bioregistry.io/schema/#0000024": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=KG09531" + "@id": "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=Gm00047" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bdgp.insertion" + "@value": "gold.meta" } }, { - "@id": "https://www.re3data.org/repository/r3d100012435", + "@id": "http://www.ontobee.org/ontology/EPIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene", + "@id": "https://registry.bio2kg.org/resource/allergome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc", + "@id": "https://registry.bio2kg.org/resource/tto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/adw", + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ordb", + "@id": "https://bioregistry.io/registry/abs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs).", + "http://purl.org/dc/terms/description": "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Olfactory Receptor Database" + "@value": "Annotated Regulatory Binding Sites" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.6375zh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORDB" + "@id": "https://fairsharing.org/FAIRsharing.7mnebr" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb" + "@id": "https://bioregistry.io/metaregistry/biocontext/ABS" }, { - "@id": "https://registry.bio2kg.org/resource/ordb" + "@id": "https://registry.identifiers.org/registry/abs" }, { - "@id": "https://registry.identifiers.org/registry/ordb" + "@id": "https://registry.bio2kg.org/resource/abs" + }, + { + "@id": "http://edamontology.org/data_2741" } ], "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "interaction" + }, + { + "@value": "regulation" + }, { "@value": "gene" }, { - "@value": "protein" + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://genome.crg.es/datasets/abs2005/" + }, + "https://bioregistry.io/schema/#0000005": "A0014", + "https://bioregistry.io/schema/#0000006": "http://genome.crg.es/datasets/abs2005/entries/$1.html", + "https://bioregistry.io/schema/#0000008": "^A\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6261-7370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/abs:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://genome.crg.es/datasets/abs2005/entries/A0014.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "abs" + } + }, + { + "@id": "https://bioregistry.io/registry/nif.ext", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: External" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://senselab.med.yale.edu/OrDB/" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, - "https://bioregistry.io/schema/#0000005": "8497", - "https://bioregistry.io/schema/#0000006": "http://senselab.med.yale.edu/ORDB/Data/$1", + "https://bioregistry.io/schema/#0000005": "7123", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nifext_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://senselab.med.yale.edu/ORDB/Data/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NIFEXT" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nifext_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://senselab.med.yale.edu/ORDB/Data/8497" + "@id": "http://uri.neuinfo.org/nif/nifstd/nifext_7123" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ordb" + "@value": "nif.ext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt", + "@id": "https://bioregistry.io/registry/tokue", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TOKU-E Cell-culture Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://cell-lines.toku-e.com" + }, + "https://bioregistry.io/schema/#0000006": "http://cell-lines.toku-e.com/Cell-Lines_$1.html", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/tokue:", + "https://bioregistry.io/schema/#0000029": { + "@value": "tokue" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN", + "@id": "https://bioportal.bioontology.org/ontologies/PLANA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/cdt", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/loinc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D.", + "http://purl.org/dc/terms/description": "The international standard for identifying health measurements, observations, and documents.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Current Dental Terminology" + "@value": "Logical Observation Identifiers Names and Codes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/20299" + "@id": "https://bartoc.org/en/node/1897" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116" + "@id": "https://fairsharing.org/FAIRsharing.2mk2zb" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC" + }, + { + "@id": "http://www.wikidata.org/entity/P4338" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/LOINC" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1" + }, + { + "@id": "http://aber-owl.net/ontology/LOINC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "preclinical studies" + }, + { + "@value": "life science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ada.org/publications/CDT" - }, - "https://bioregistry.io/schema/#0000005": "1000001", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/oral-health-and-disease-ontologies/ohd-ontology/f19378ff192b6f9ea16133e85671e8359fc371cd/src/ontology/archive/CDTCodes%20as%20Classes_pruned.owl" + "@id": "https://loinc.org/" }, + "https://bioregistry.io/schema/#0000005": "LL379-9", + "https://bioregistry.io/schema/#0000006": "https://loinc.org/$1", + "https://bioregistry.io/schema/#0000008": "^(\\d|\\w)+-\\d$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/ohd" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nfdbadb6140024e31ae546873f2773b8a" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "LNC" + }, + "https://bioregistry.io/schema/#0000024": "https://loinc.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://loinc.org/LL379-9" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cdt" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010669", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "loinc" } }, { - "@id": "https://orcid.org/0000-0003-1082-8760", + "@id": "_:Nfdbadb6140024e31ae546873f2773b8a", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alvin Walker" + "@value": "LOINC Support" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "awalker@apa.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "loinc@regenstrief.org" } }, { - "@id": "https://registry.identifiers.org/registry/hinv.transcript", + "@id": "http://www.ontobee.org/ontology/OHD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "http://aber-owl.net/ontology/ECAO", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_331", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://www.obofoundry.org/ontology/disdriv", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs", + "@id": "https://bioregistry.io/registry/frbr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/frbrer" + }, "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/frbr" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Functional Requirements for Bibliographic Records" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.b34b43" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/frbr" + }, + "https://bioregistry.io/schema/#0000005": "Expression", + "https://bioregistry.io/schema/#0000006": "http://purl.org/vocab/frbr/core#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/vocab/frbr/core#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/vocab/frbr/core#Expression" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "frbr" } }, { - "@id": "https://registry.bio2kg.org/resource/pathwaycommons", + "@id": "http://aber-owl.net/ontology/DRON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOBI", + "@id": "https://fairsharing.org/FAIRsharing.d064y6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/OMIT", + "@id": "https://registry.identifiers.org/registry/smpdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo", + "@id": "https://registry.identifiers.org/registry/insdc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EPSO", + "@id": "https://registry.identifiers.org/registry/homd.seq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/UPA", + "@id": "https://fairsharing.org/FAIRsharing.h8r843", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.j0ezpm", + "@id": "https://bioportal.bioontology.org/ontologies/OGMS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/cito", + "@id": "https://bioregistry.io/registry/ehdaa2", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/cito" + "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Citation Typing Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.b220d4" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "knowledge and information systems" + "@value": "Human developmental anatomy, abstract" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/EHDAA2" + }, + { + "@id": "http://www.ontobee.org/ontology/EHDAA2" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7zxrs6" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2" + }, + { + "@id": "https://www.obofoundry.org/ontology/ehdaa2" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biomedical science" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "ontology" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/cito" + "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" }, - "https://bioregistry.io/schema/#0000005": "sharesAuthorInstitutionWith", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/cito/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDAA2_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ehdaa2.owl" }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/cito/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/cito/sharesAuthorInstitutionWith" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/cl" + }, + { + "@id": "https://bioregistry.io/registry/aeo" + }, + { + "@id": "https://bioregistry.io/registry/caro" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Na2cd73fcf1ba47599ec8b2a8dd93bcad" }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "EHDAA2_RETIRED" + }, + { + "@value": "HDAA2" + }, + { + "@value": "RETIRED_EHDAA2" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDAA2_", "https://bioregistry.io/schema/#0000029": { - "@value": "cito" - } - }, - { - "@id": "https://registry.identifiers.org/registry/so", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEURONDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ehdaa2" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "_:Na2cd73fcf1ba47599ec8b2a8dd93bcad", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jonathan Bard" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "J.Bard@ed.ac.uk" } }, { - "@id": "http://www.wikidata.org/entity/P486", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/ncats.drug", + "@id": "https://bioregistry.io/registry/habronattus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCATS Drugs" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://drugs.ncats.io/" + "@value": "Habronattus courtship" }, - "https://bioregistry.io/schema/#0000005": "44259", - "https://bioregistry.io/schema/#0000006": "https://drugs.ncats.io/drug/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "inxight-drugs" + "@id": "https://www.obofoundry.org/ontology/habronattus" }, { - "@value": "inxight" + "@id": "https://bioregistry.io/metaregistry/biocontext/HABRONATTUS" } ], - "https://bioregistry.io/schema/#0000024": "https://drugs.ncats.io/drug/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://drugs.ncats.io/drug/44259" + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mesquiteproject.org/ontology/Habronattus/index.html" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HABRONATTUS_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6512-3296" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HABRONATTUS_", "https://bioregistry.io/schema/#0000029": { - "@value": "ncats.drug" + "@value": "habronattus" } }, { - "@id": "https://bioregistry.io/registry/fplx", + "@id": "https://bioregistry.io/registry/classyfire", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.", + "http://purl.org/dc/terms/description": "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FamPlex" + "@value": "ClassyFire" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/classyfire" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/FPLX" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FPLX" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx" - }, - { - "@id": "https://registry.identifiers.org/registry/fplx" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX" - } - ], "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sorgerlab.github.io/famplex/" + "@id": "http://classyfire.wishartlab.com/" }, - "https://bioregistry.io/schema/#0000005": "GPIb_IX_V", - "https://bioregistry.io/schema/#0000006": "https://sorgerlab.github.io/famplex/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9][A-Za-z0-9_]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9439-5346" + "https://bioregistry.io/schema/#0000005": "0004828", + "https://bioregistry.io/schema/#0000006": "http://classyfire.wishartlab.com/tax_nodes/C$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://classyfire.wishartlab.com/system/downloads/1_0/chemont/ChemOnt_2_1.obo.zip" }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "famplex" + "@value": "CHEMONTID" }, - "https://bioregistry.io/schema/#0000024": "https://sorgerlab.github.io/famplex/", + "https://bioregistry.io/schema/#0000024": "http://classyfire.wishartlab.com/tax_nodes/C", "https://bioregistry.io/schema/#0000027": { - "@id": "https://sorgerlab.github.io/famplex/GPIb_IX_V" + "@id": "http://classyfire.wishartlab.com/tax_nodes/C0004828" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fplx" + "@value": "classyfire" } }, { - "@id": "https://registry.identifiers.org/registry/gold.meta", + "@id": "https://registry.bio2kg.org/resource/bdgp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.reaction", + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_2654", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/protcom", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures).", + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of protein-protein complexes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/protcom" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ces.clemson.edu/compbio/protcom" - }, - "https://bioregistry.io/schema/#0000005": "12e8LH", - "https://bioregistry.io/schema/#0000006": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=12e8LH" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "protcom" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-9399-8003", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rosemary Shrestha" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@id": "https://fairsharing.org/FAIRsharing.8hcczk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.cb7086", + "@id": "https://fairsharing.org/FAIRsharing.vxz9pn", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bg5xqs", + "@id": "https://fairsharing.org/FAIRsharing.qje0v8", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/sabiork.reaction", + "@id": "https://bioportal.bioontology.org/ontologies/ZFA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/qudt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information.", + "http://purl.org/dc/terms/description": "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/qudt/qudt-public-repo" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SABIO-RK Reaction" + "@value": "Quantities, Units, Dimensions, and Types Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.REACTION" - }, - { - "@id": "https://registry.bio2kg.org/resource/sabiork.reaction" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.cwx04e" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011052" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.reaction" + "@id": "http://aber-owl.net/ontology/QUDT" }, { - "@id": "http://edamontology.org/data_2309" + "@id": "https://bioportal.bioontology.org/ontologies/QUDT" }, { - "@id": "https://www.uniprot.org/database/DB-0177" + "@id": "https://fairsharing.org/FAIRsharing.d3pqw7" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction" + "@id": "https://bartoc.org/en/node/18206" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biochemistry" - }, - { - "@value": "reaction" - }, - { - "@value": "pathway" - }, - { - "@value": "life science" + "@value": "ontology" }, { - "@value": "kinetics" + "@value": "astrophysics and astronomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sabiork.h-its.org/" + "@id": "https://qudt.org" }, - "https://bioregistry.io/schema/#0000005": "75", - "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/reacdetails.jsp?reactid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "SABIO-RK" + "https://bioregistry.io/schema/#0000005": "baseDimensionEnumeration", + "https://bioregistry.io/schema/#0000006": "http://qudt.org/schema/qudt#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/QUDT/4/qudt.owl" }, - "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/reacdetails.jsp?reactid=", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://qudt.org/schema/qudt#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://sabiork.h-its.org/reacdetails.jsp?reactid=75" + "@id": "http://qudt.org/schema/qudt#baseDimensionEnumeration" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sabiork.reaction" + "@value": "qudt" } }, { - "@id": "https://bioregistry.io/registry/pubchem.cell", + "@id": "http://aber-owl.net/ontology/APO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3117", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/xsd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell Lines in PubChem", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/pubchem" - } - ], + "http://purl.org/dc/terms/description": "This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubChem Cell Line" + "@value": "XML Schema Definition" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biocontext/xsd" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "bioactivities" - }, - { - "@value": "cell lines" - }, - { - "@value": "chemistry" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pubchem.ncbi.nlm.nih.gov" + "@id": "http://www.w3.org/2001/XMLSchema" }, - "https://bioregistry.io/schema/#0000005": "31", - "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/cell/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "decimal", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2001/XMLSchema#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/cell/", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2001/XMLSchema#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://pubchem.ncbi.nlm.nih.gov/cell/31" + "@id": "http://www.w3.org/2001/XMLSchema#decimal" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pubchem.cell" + "@value": "xsd" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335", + "@id": "https://bioregistry.io/metaregistry/go/resolve/REBASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/lspci", + "@id": "https://bioregistry.io/registry/phosphosite.protein", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)", + "http://purl.org/dc/terms/description": "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Laboratory of Systems Pharmacology Compound" + "@value": "PhosphoSite Protein" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "drugs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein" }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/phosphosite.protein" }, { - "@value": "metabolites" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://labsyspharm.github.io/lspci/" + "@id": "http://www.phosphosite.org/homeAction.do" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://labsyspharm.github.io/lspci/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "12300", + "https://bioregistry.io/schema/#0000006": "http://www.phosphosite.org/proteinAction.do?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://labsyspharm.github.io/lspci/", + "https://bioregistry.io/schema/#0000024": "http://www.phosphosite.org/proteinAction.do?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://labsyspharm.github.io/lspci/1" + "@id": "http://www.phosphosite.org/proteinAction.do?id=12300" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lspci" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g1qrqs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ecto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mpath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "phosphosite.protein" } }, { - "@id": "https://bioregistry.io/registry/jrct", + "@id": "https://bioregistry.io/registry/fhir.implementation", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)", + "http://purl.org/dc/terms/description": "A set of guides on implementing various processes within hospitals or healthcare systems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Japan Registry of Clinical Trials" + "@value": "FHIR United States Implementation Guides" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://jrct.niph.go.jp" + "@id": "https://hl7.org/fhir/us/" }, - "https://bioregistry.io/schema/#0000005": "jRCTs041220087", - "https://bioregistry.io/schema/#0000006": "https://jrct.niph.go.jp/en-latest-detail/$1", - "https://bioregistry.io/schema/#0000008": "^jRCT\\w?\\d+$", + "https://bioregistry.io/schema/#0000005": "immds", + "https://bioregistry.io/schema/#0000006": "https://hl7.org/fhir/us/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://jrct.niph.go.jp/en-latest-detail/", + "https://bioregistry.io/schema/#0000024": "https://hl7.org/fhir/us/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://jrct.niph.go.jp/en-latest-detail/jRCTs041220087" + "@id": "https://hl7.org/fhir/us/immds" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jrct" + "@value": "fhir.implementation" } }, { - "@id": "https://bioregistry.io/registry/oban", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]", + "@id": "https://www.obofoundry.org/ontology/pcl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/OBAN" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Biomedical Annotations" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EBISPOT/OBAN" - }, - "https://bioregistry.io/schema/#0000005": "provenance", - "https://bioregistry.io/schema/#0000006": "http://purl.org/oban/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/EBISPOT/OBAN/master/ontology/oban_core.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://purl.org/oban/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/oban/provenance" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oban" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/CAO", + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.STAGE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/dg.f82a1a", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/VT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/modeldb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/genecards", + "@id": "https://bioregistry.io/registry/uo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene.", + "http://purl.org/dc/terms/description": "Ontology of standardized units", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bio-ontology-research-group/unit-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeneCards" + "@value": "Units of measurement ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/genecards" + "@id": "https://bioportal.bioontology.org/ontologies/UO" }, { - "@id": "https://fairsharing.org/FAIRsharing.g7jbvn" + "@id": "https://fairsharing.org/FAIRsharing.mjnypw" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards" + "@id": "http://www.ontobee.org/ontology/UO" }, { - "@id": "https://www.re3data.org/repository/r3d100012015" + "@id": "https://registry.bio2kg.org/resource/uo" }, { - "@id": "https://www.uniprot.org/database/DB-0030" + "@id": "http://aber-owl.net/ontology/UO" }, { - "@id": "https://registry.identifiers.org/registry/genecards" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS" + "@id": "https://bioregistry.io/metaregistry/biocontext/UO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo" + }, + { + "@id": "https://registry.identifiers.org/registry/uo" + }, + { + "@id": "https://www.obofoundry.org/ontology/uo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "obo" }, { - "@value": "transcriptomics" + "@value": "mathematics" }, { - "@value": "life science" + "@value": "ontology" }, { - "@value": "genetics" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genecards.org/" + "@id": "https://github.com/bio-ontology-research-group/unit-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000080", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/uo.owl" }, - "https://bioregistry.io/schema/#0000005": "ABL1", - "https://bioregistry.io/schema/#0000006": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z-0-9_]+(\\@)?$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/rbo" + }, + { + "@id": "https://bioregistry.io/registry/ms" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/scdo" + } + ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5424-1393" + "@id": "https://orcid.org/0000-0002-2061-091X" }, - "https://bioregistry.io/schema/#0000024": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=ABL1" + "@id": "http://purl.obolibrary.org/obo/UO_0000080" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genecards" + "@value": "uo" } }, { - "@id": "http://www.ontobee.org/ontology/WBls", + "@id": "https://bioportal.bioontology.org/ontologies/MOP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/collection/0000010", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/registry/thermofisher", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ThermoFisher is a life sciences supply vendor.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Thermo Fisher Scientific" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/chembl" - }, - { - "@id": "https://bioregistry.io/registry/sgd" - }, - { - "@id": "https://bioregistry.io/registry/go" - }, - { - "@id": "https://bioregistry.io/registry/bto" - }, - { - "@id": "https://bioregistry.io/registry/pharmgkb.disease" - }, - { - "@id": "https://bioregistry.io/registry/eupath" - }, - { - "@id": "https://bioregistry.io/registry/brenda.ligand" - }, - { - "@id": "https://bioregistry.io/registry/ena.embl" - }, - { - "@id": "https://bioregistry.io/registry/orphanet" - }, - { - "@id": "https://bioregistry.io/registry/civic.eid" - }, - { - "@id": "https://bioregistry.io/registry/interpro" - }, - { - "@id": "https://bioregistry.io/registry/pharmgkb.pathways" - }, - { - "@id": "https://bioregistry.io/registry/mgi" - }, - { - "@id": "https://bioregistry.io/registry/ensembl" - }, - { - "@id": "https://bioregistry.io/registry/panther.pthcmp" - }, - { - "@id": "https://bioregistry.io/registry/pharmgkb.gene" - }, - { - "@id": "https://bioregistry.io/registry/orphanet.ordo" - }, - { - "@id": "https://bioregistry.io/registry/ecocyc" - }, - { - "@id": "https://bioregistry.io/registry/px" - }, - { - "@id": "https://bioregistry.io/registry/bacdive" - }, - { - "@id": "https://bioregistry.io/registry/rgd" - }, - { - "@id": "https://bioregistry.io/registry/brenda" - }, - { - "@id": "https://bioregistry.io/registry/flybase" - }, - { - "@id": "https://bioregistry.io/registry/panther.family" - }, - { - "@id": "https://bioregistry.io/registry/agrkb" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/panther.pathway" - }, - { - "@id": "https://bioregistry.io/registry/pmc" - }, - { - "@id": "https://bioregistry.io/registry/gbif" - }, - { - "@id": "https://bioregistry.io/registry/reactome" - }, - { - "@id": "https://bioregistry.io/registry/brenda.ligandgroup" - }, - { - "@id": "https://bioregistry.io/registry/hgnc" - }, - { - "@id": "https://bioregistry.io/registry/civic.tid" - }, - { - "@id": "https://bioregistry.io/registry/pharmgkb.drug" - }, - { - "@id": "https://bioregistry.io/registry/gnomad" - }, - { - "@id": "https://bioregistry.io/registry/civic.did" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/panther.node" + "@value": "vendor" }, { - "@id": "https://bioregistry.io/registry/civic.gid" + "@value": "chemistry" }, { - "@id": "https://bioregistry.io/registry/pombase" + "@value": "life sciences" }, { - "@id": "https://bioregistry.io/registry/civic.sid" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.thermofisher.com" + }, + "https://bioregistry.io/schema/#0000005": "OSR00185W", + "https://bioregistry.io/schema/#0000006": "https://www.thermofisher.com/antibody/product/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.thermofisher.com/antibody/product/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.thermofisher.com/antibody/product/OSR00185W" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "thermofisher" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FOVT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bindingdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/co_330", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CIP - potato ontology - december 2018", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Potato ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://cropontology.org/ontology/CO_330" }, { - "@id": "https://bioregistry.io/registry/ucsc" + "@id": "https://fairsharing.org/FAIRsharing.4fa657" }, { - "@id": "https://bioregistry.io/registry/wormbase" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_330" }, { - "@id": "https://bioregistry.io/registry/zfin" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/rhea" + "@value": "botany" }, { - "@id": "https://bioregistry.io/registry/pdb" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/civic.aid" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/civic.vid" + "@value": "agriculture" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Global Biodata Coalition - Global Core Biodata Resources" - } - }, - { - "@id": "https://registry.identifiers.org/registry/metacyc.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_330/Potato" + }, + "https://bioregistry.io/schema/#0000005": "0000106", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_330:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_330/Potato/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N1941aa3acb794f359c0dab40a07927ba" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_330:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_330:0000106" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_330" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbProbe", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "_:N1941aa3acb794f359c0dab40a07927ba", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/registry/bcrj", + "@id": "https://bioregistry.io/registry/siren", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Banco de Celulas do Rio de Janeiro" + "@value": "Scientific Information Retrieval and Exchange Network" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ" + "@id": "http://agroportal.lirmm.fr/ontologies/SIREN" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bcrj.org.br/pesquisa/" + "@id": "https://www.langual.org/langual_indexed_datasets.asp" }, - "https://bioregistry.io/schema/#0000005": "0278", - "https://bioregistry.io/schema/#0000006": "http://bcrj.org.br/celula/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000005": "F11903", + "https://bioregistry.io/schema/#0000008": "^F\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bcrj.org.br/celula/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bcrj.org.br/celula/0278" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9134-5404" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "SUBSET_SIREN" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bcrj" + "@value": "siren" } }, { - "@id": "https://fairsharing.org/FAIRsharing.0a674c", + "@id": "https://www.obofoundry.org/ontology/adw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://aber-owl.net/ontology/HSO", + "@id": "https://semanticscience.org/resource/CHEMINF_000564", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://bioregistry.io/registry/pmr.workspace", + "@id": "https://bioregistry.io/registry/bigg.model", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Workspace (Git repository) for modeling projects managed by the Physiome Model Repository", + "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Physiome Model Repository workspace" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/pmr.workspace" + "@value": "BiGG Model" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/bigg.model" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.auckland.ac.nz/en.html" + "@id": "http://bigg.ucsd.edu/models" }, - "https://bioregistry.io/schema/#0000005": "modularmassactionprimer", - "https://bioregistry.io/schema/#0000006": "https://models.physiomeproject.org/workspace/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\-]+(/.*?)?$", + "https://bioregistry.io/schema/#0000005": "iECABU_c1320", + "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://models.physiomeproject.org/workspace/", + "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://models.physiomeproject.org/workspace/modularmassactionprimer" + "@id": "http://bigg.ucsd.edu/models/iECABU_c1320" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pmr.workspace" + "@value": "bigg.model" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY", + "@id": "https://bioregistry.io/registry/bitterdb.cpd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BitterDB Compound" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BITTERDB.CPD" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd" + }, + { + "@id": "https://registry.identifiers.org/registry/bitterdb.cpd" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bitterdb.agri.huji.ac.il/dbbitter.php" + }, + "https://bioregistry.io/schema/#0000005": "46", + "https://bioregistry.io/schema/#0000006": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=46" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bitterdb.cpd" } }, { - "@id": "https://bioregistry.io/registry/roleo", + "@id": "https://bioregistry.io/registry/ppo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.", + "http://purl.org/dc/terms/description": "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/PlantPhenoOntology/PPO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Role Ontology" + "@value": "Plant Phenology Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/ROLEO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PPO" }, { - "@id": "http://aber-owl.net/ontology/ROLEO" + "@id": "https://www.obofoundry.org/ontology/ppo" }, { - "@id": "https://registry.bio2kg.org/resource/roleo" + "@id": "https://bioportal.bioontology.org/ontologies/PPO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PPO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo" + }, + { + "@id": "http://aber-owl.net/ontology/PPO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hakg7c" + }, + { + "@id": "http://www.ontobee.org/ontology/PPO" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "obo" }, + { + "@value": "botany" + }, { "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sourceforge.net/projects/roleo" + "@id": "https://github.com/PlantPhenoOntology/PPO" }, - "https://bioregistry.io/schema/#0000005": "0000002", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RoleO_$1", + "https://bioregistry.io/schema/#0000005": "0002058", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PPO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ROLEO/1/roleo.owl" + "@id": "http://purl.obolibrary.org/obo/ppo.owl" }, - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0001-8815-0078" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RoleO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PPO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/RoleO_0000002" + "@id": "http://purl.obolibrary.org/obo/PPO_0002058" }, "https://bioregistry.io/schema/#0000029": { - "@value": "roleo" + "@value": "ppo" } }, { - "@id": "http://aber-owl.net/ontology/AISM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://orcid.org/0000-0001-8646-5463", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Laia Subirats" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "laia.subirats@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards", + "@id": "http://aber-owl.net/ontology/HSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna", + "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-5059-4132", + "@id": "https://bioregistry.io/registry/bdgp.est", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Marijane White" + "@value": "Berkeley Drosophila Genome Project EST database" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "whimar@ohsu.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST" + }, + { + "@id": "https://registry.bio2kg.org/resource/flybase.est" + }, + { + "@id": "https://registry.identifiers.org/registry/bdgp.est" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/dbEST/index.html" + }, + "https://bioregistry.io/schema/#0000005": "EY223054.1", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucest/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?(\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/dbest" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucest/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/nucest/EY223054.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bdgp.est" } }, { - "@id": "https://fairsharing.org/FAIRsharing.jykmkw", + "@id": "https://registry.bio2kg.org/resource/metnetdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.newa3z", + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase", + "@id": "https://fairsharing.org/FAIRsharing.kkq6pw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.uniprot.org/database/DB-0155", + "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/mondo", + "@id": "https://www.obofoundry.org/ontology/wbphenotype", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.ontobee.org/ontology/CIDO", + "@id": "https://fairsharing.org/FAIRsharing.y1zyaq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/hgnc.genegroup", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.wf28wm", + "@id": "https://bioregistry.io/registry/novus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A vendor of antibodies and other biologics", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Novus Biologicals" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.novusbio.com" + }, + "https://bioregistry.io/schema/#0000005": "nb100-56351", + "https://bioregistry.io/schema/#0000006": "https://www.novusbio.com/products/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.novusbio.com/products/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.novusbio.com/products/nb100-56351" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "novus" } }, { - "@id": "https://bioregistry.io/registry/gramene.growthstage", + "@id": "https://www.obofoundry.org/ontology/tao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/epd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/rcb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.", + "http://purl.org/dc/terms/description": "Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene Growth Stage Ontology" + "@value": "RIKEN Bioresource Center Cell Bank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE" - }, + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.obofoundry.org/ontology/gro" + "@value": "virus" }, { - "@id": "https://registry.bio2kg.org/resource/gramene.po" + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/gro" + "@value": "experimental animal" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@value": "animal" }, { - "@value": "ontology" + "@value": "plant" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/plant_ontology/" - }, - "https://bioregistry.io/schema/#0000005": "0007133", - "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/ontology/search?id=GRO:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N99cf0000a4e74a949363596ae1f73f20" - }, - "https://bioregistry.io/schema/#0000023": [ + "@value": "recombinant host" + }, { - "@value": "gro-cpga" + "@value": "genetic material" }, { - "@value": "cpga" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/ontology/search?id=GRO:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gramene.org/db/ontology/search?id=GRO:0007133" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.growthstage" - } - }, - { - "@id": "_:N99cf0000a4e74a949363596ae1f73f20", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Ontology Administrators" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "po-discuss@plantontology.org" - } - }, - { - "@id": "https://bioregistry.io/registry/sael", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "sael" - } - }, - { - "@id": "https://bioregistry.io/registry/ensembl.bacteria", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.", - "http://purl.org/dc/terms/isPartOf": [ + "@value": "organ" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "faseb list" }, { - "@id": "https://bioregistry.io/registry/ensembl" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Bacteria" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@value": "tissue" + }, { - "@id": "https://www.uniprot.org/database/DB-0147" + "@value": "embryo" }, { - "@id": "https://fairsharing.org/FAIRsharing.zsgmvd" + "@value": "experimental plant" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria" + "@value": "cell" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria" + "@value": "sperm" }, { - "@id": "https://www.re3data.org/repository/r3d100011195" + "@value": "dna" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA" + "@value": "cultured cell" }, { - "@id": "https://registry.identifiers.org/registry/ensembl.bacteria" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "cell line" + }, { - "@value": "comparative genomics" + "@value": "seed" }, { - "@value": "genome" + "@value": "bioresource" }, { - "@value": "genomics" + "@value": "cultured cell line" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bacteria.ensembl.org/" + "@id": "https://cell.brc.riken.jp/en/rcb" }, - "https://bioregistry.io/schema/#0000005": "MU9_3181", - "https://bioregistry.io/schema/#0000006": "https://bacteria.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$", + "https://bioregistry.io/schema/#0000005": "RCB0002", + "https://bioregistry.io/schema/#0000006": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1", + "https://bioregistry.io/schema/#0000008": "^RCB\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bacteria.ensembl.org/id/", + "https://bioregistry.io/schema/#0000024": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bacteria.ensembl.org/id/MU9_3181" + "@id": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=RCB0002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl.bacteria" + "@value": "rcb" } }, { - "@id": "https://www.re3data.org/repository/r3d100013361", + "@id": "https://registry.bio2kg.org/resource/sdap", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/hamap", + "@id": "https://registry.identifiers.org/registry/dommino", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/abcam", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pseudogene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ccf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Vendor for assays, cells, and antibodies", + "http://purl.org/dc/terms/description": "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/hubmapconsortium/ccf-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Abcam" + "@value": "Human Reference Atlas Common Coordinate Framework Ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CCF" + }, + { + "@id": "http://aber-owl.net/ontology/CCF" + }, + { + "@id": "https://www.re3data.org/repository/r3d100012657" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.abcam.com" + "@id": "https://bioportal.bioontology.org/ontologies/CCF" + }, + "https://bioregistry.io/schema/#0000005": "extraction_set", + "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1", + "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.org/ccf/releases/2.2.1/ccf.owl" }, - "https://bioregistry.io/schema/#0000005": "ab275461", - "https://bioregistry.io/schema/#0000006": "https://www.abcam.com/$1.html", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/abcam:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3321-6137" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.abcam.com/ab275461.html" + "@id": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2Fextraction_set" }, "https://bioregistry.io/schema/#0000029": { - "@value": "abcam" + "@value": "ccf" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROMORPHO", + "@id": "https://bioregistry.io/registry/violinnet", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Defunct vaccine information source from the He Lab", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ViolinNet" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P1925" + }, + "https://bioregistry.io/schema/#0000005": "4140", + "https://bioregistry.io/schema/#0000006": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/oae" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "violinID" + }, + { + "@value": "violinId" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=4140" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "violinnet" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://www.ontobee.org/ontology/AFO", + "@id": "https://registry.identifiers.org/registry/yetfasco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/prov", + "@id": "https://bioregistry.io/registry/wormpep", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web.", + "http://purl.org/dc/terms/description": "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PROV Namespace" + "@value": "Wormpep" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/PROV" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/prov" + "@id": "https://registry.bio2kg.org/resource/wormpep" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov" + "@id": "https://registry.identifiers.org/registry/wormpep" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov" + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structure" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/ns/prov" - }, - "https://bioregistry.io/schema/#0000005": "Activity", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/prov#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.w3.org/ns/prov-o" + "@id": "https://www.wormbase.org/db/seq/protein" }, + "https://bioregistry.io/schema/#0000005": "CE28239", + "https://bioregistry.io/schema/#0000006": "https://www.wormbase.org/db/seq/protein?name=$1", + "https://bioregistry.io/schema/#0000008": "^CE\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/prov#", + "https://bioregistry.io/schema/#0000024": "https://www.wormbase.org/db/seq/protein?name=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/prov#Activity" + "@id": "https://www.wormbase.org/db/seq/protein?name=CE28239" }, "https://bioregistry.io/schema/#0000029": { - "@value": "prov" + "@value": "wormpep" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo", + "@id": "https://bioportal.bioontology.org/ontologies/VO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA", + "@id": "http://edamontology.org/data_2629", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://www.wikidata.org/entity/P850", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/co_338", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015", + "@id": "http://www.ontobee.org/ontology/SYMP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/uniprot.chain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/tuberculist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3q3kvn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/chickenqtldb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/qtldb" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chickpea ontology" + "@value": "Animal Genome Chicken QTL" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_338" + "@id": "https://registry.identifiers.org/registry/chickenqtldb" }, { - "@id": "https://fairsharing.org/FAIRsharing.js20q3" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_338" + "@id": "https://registry.bio2kg.org/resource/chickenqtldb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" - }, - { - "@value": "ontology" + "@value": "dna" }, { - "@value": "botany" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_338/Chickpea" - }, - "https://bioregistry.io/schema/#0000005": "0000138", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_338:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_338/Chickpea/owl" + "@id": "https://www.animalgenome.org/QTLdb" }, + "https://bioregistry.io/schema/#0000005": "14362", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0091-7981" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_338:", + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_338:0000138" + "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:14362" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_338" + "@value": "chickenqtldb" } }, { - "@id": "https://registry.identifiers.org/registry/chemspider", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/virmirdb", + "@id": "https://bioregistry.io/registry/dc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database containing predicted viral miRNA candidate hairpins.", + "http://purl.org/dc/terms/description": "Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.\n\n**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3)).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vir-Mir db" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/virmirdb" + "@value": "Dublin Core Elements (1.1)" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.3nx7t" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dc" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DC" + }, + { + "@id": "http://aber-owl.net/ontology/dcelements" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "rna" + "@value": "subject agnostic" }, { - "@value": "structure" + "@value": "ontology" + }, + { + "@value": "biomedical science" + }, + { + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://alk.ibms.sinica.edu.tw" + "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/" }, - "https://bioregistry.io/schema/#0000005": "11002", - "https://bioregistry.io/schema/#0000006": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "https://bioregistry.io/schema/#0000005": "contributor", + "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/elements/1.1/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_elements.rdf" }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9052-2854" }, - "https://bioregistry.io/schema/#0000024": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "dce" + }, + { + "@value": "dc11" + }, + { + "@value": "dc.elements" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/elements/1.1/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=11002" + "@id": "http://purl.org/dc/elements/1.1/contributor" }, "https://bioregistry.io/schema/#0000029": { - "@value": "virmirdb" + "@value": "dc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZP", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase_Cell_line", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://www.wikidata.org/entity/P6778", + "@id": "https://bioregistry.io/metaregistry/biocontext/ARO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FBbi", + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P351", + "@id": "https://registry.bio2kg.org/resource/ncbi.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/mim", + "@id": "https://orcid.org/0000-0002-9903-4248", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael Baudis" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mbaudis@me.com" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY", + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.GROWTHSTAGE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/aao", + "@id": "https://registry.identifiers.org/registry/ensembl.plant", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/envipath", + "@id": "https://bioportal.bioontology.org/ontologies/UO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/archdb", + "@id": "https://bioportal.bioontology.org/ontologies/CIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/cdd", + "@id": "https://registry.identifiers.org/registry/mamo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/microscope", + "@id": "https://registry.identifiers.org/registry/brenda", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/coriell", + "@id": "https://registry.identifiers.org/registry/gramene.protein", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/taxonomy", + "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p58bm4", + "@id": "https://fairsharing.org/FAIRsharing.vr52p3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/vto", + "@id": "http://www.ontobee.org/ontology/ECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FPLX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/ADW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/hpmr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/codelink", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Comprehensive hierarchy of extinct and extant vertebrate taxa.", + "http://purl.org/dc/terms/description": "GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/phenoscape/vertebrate-taxonomy-ontology" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "transcriptomics" + }, + { + "@value": "microarray" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-GEHB-1/A-GEHB-1.adf.txt" + }, + "https://bioregistry.io/schema/#0000005": "GE86325", + "https://bioregistry.io/schema/#0000008": "^GE\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "codelink" + } + }, + { + "@id": "https://bioregistry.io/registry/bgee.organ", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bgee organ" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ" + }, + { + "@id": "https://registry.identifiers.org/registry/bgee.organ" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bgee.unil.ch/bgee/bgee" + }, + "https://bioregistry.io/schema/#0000005": "EHDAA:2185", + "https://bioregistry.io/schema/#0000006": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1", + "https://bioregistry.io/schema/#0000008": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=EHDAA:2185" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bgee.organ" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7xkx69", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/bootstrep", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Taxonomy Ontology" + "@value": "Gene Regulation Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/VTO" - }, - { - "@id": "http://aber-owl.net/ontology/VTO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.akmeb9" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VTO" - }, - { - "@id": "https://www.obofoundry.org/ontology/vto" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vto" + "@id": "https://www.obofoundry.org/ontology/bootstrep" }, { - "@id": "http://www.ontobee.org/ontology/VTO" + "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "taxonomy" + "@value": "ontology" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/phenoscape/vertebrate-taxonomy-ontology" - }, - "https://bioregistry.io/schema/#0000005": "9008500", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VTO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vto.owl" + "@id": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html" }, - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BOOTSTREP_$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8688-6599" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VTO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VTO_9008500" + "@id": "_:N7daf0920305247a2a9db552f15496084" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BOOTSTREP_", "https://bioregistry.io/schema/#0000029": { - "@value": "vto" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mmp.db", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "bootstrep" } }, { - "@id": "https://www.obofoundry.org/ontology/wbbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "_:N7daf0920305247a2a9db552f15496084", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vivian Lee" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "vlee@ebi.ac.uk" } }, { - "@id": "https://www.obofoundry.org/ontology/hao", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.uniprot.org/database/DB-0079", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/ivdb", + "@id": "http://aber-owl.net/ontology/SBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/drugbank", + "@id": "https://bioregistry.io/metaregistry/biocontext/RRID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0001-5212-7052", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jeffrey Grethe" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jgrethe@ucsd.edu" } }, { - "@id": "http://www.ontobee.org/ontology/ONTOAVIDA", + "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/protclustdb", + "@id": "https://bioregistry.io/registry/cosmic", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.", + "http://purl.org/dc/terms/description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProtClustDB" + "@value": "COSMIC Gene" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTCLUSTDB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic" }, { - "@id": "https://fairsharing.org/FAIRsharing.da493y" + "@id": "https://fairsharing.org/FAIRsharing.s5zmbp" }, { - "@id": "https://registry.bio2kg.org/resource/protclustdb" + "@id": "https://registry.identifiers.org/registry/cosmic" }, { - "@id": "https://registry.identifiers.org/registry/protclustdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic" + }, + { + "@id": "http://edamontology.org/data_3264" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "genomics" - }, - { - "@value": "life science" + "@value": "biomedical science" }, { "@value": "genetics" - }, - { - "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/proteinclusters?db=proteinclusters" + "@id": "http://cancer.sanger.ac.uk/cosmic/" }, - "https://bioregistry.io/schema/#0000005": "O80725", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "BRAF", + "https://bioregistry.io/schema/#0000006": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=", + "https://bioregistry.io/schema/#0000024": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=O80725" + "@id": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=BRAF" }, "https://bioregistry.io/schema/#0000029": { - "@value": "protclustdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "cosmic" } }, { - "@id": "https://www.re3data.org/repository/r3d100010776", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } + "@id": "https://orcid.org/0000-0002-6020-5919", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Elizabeth Arnaud" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "e.arnaud@cgiar.org" + }, + { + "@value": "helpdesk@cropontology-curationtool.org" + } + ] }, { - "@id": "https://fairsharing.org/FAIRsharing.q9j2e3", + "@id": "https://registry.identifiers.org/registry/pina", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/merops.entry", + "@id": "https://bioregistry.io/registry/hl7.v2codesystem", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.", + "http://purl.org/dc/terms/description": "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MEROPS Entry" + "@value": "HL7 V2 Code Systems" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://edamontology.org/data_2629" - }, - { - "@id": "https://registry.identifiers.org/registry/merops.inhibitor" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2s4n8r" - }, - { - "@id": "https://registry.bio2kg.org/resource/merops" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "enzyme" - }, - { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, - { - "@value": "structure" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://merops.sanger.ac.uk/index.htm" + "@id": "https://terminology.hl7.org/codesystems-v2.html" }, - "https://bioregistry.io/schema/#0000005": "I31.952", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1", - "https://bioregistry.io/schema/#0000008": "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$", + "https://bioregistry.io/schema/#0000005": "0778", + "https://bioregistry.io/schema/#0000006": "http://terminology.hl7.org/CodeSystem/v2-$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "merops.inhibitor" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=", + "https://bioregistry.io/schema/#0000024": "http://terminology.hl7.org/CodeSystem/v2-", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=I31.952" + "@id": "http://terminology.hl7.org/CodeSystem/v2-0778" }, "https://bioregistry.io/schema/#0000029": { - "@value": "merops.entry" + "@value": "hl7.v2codesystem" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME", + "@id": "http://www.wikidata.org/entity/P354", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF", + "@id": "https://registry.identifiers.org/registry/vgnc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes", + "@id": "https://www.obofoundry.org/ontology/rex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype", + "@id": "http://aber-owl.net/ontology/PRIDE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://fairsharing.org/FAIRsharing.tp9z4q", + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/scop", + "@id": "http://edamontology.org/data_2343", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.identifiers.org/registry/gramene.qtl", + "@id": "https://bioregistry.io/metaregistry/biocontext/ODOR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/supfam", + "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CPT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/vbase2", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.", + "http://purl.org/dc/terms/description": "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SUPERFAMILY" + "@value": "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/superfamily" + "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2" }, { - "@id": "https://registry.identifiers.org/registry/supfam" + "@id": "https://registry.bio2kg.org/resource/vbase2" }, { - "@id": "https://www.uniprot.org/database/DB-0155" + "@id": "https://fairsharing.org/FAIRsharing.qvxhb1" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VBASE2" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2" + }, + { + "@id": "https://registry.identifiers.org/registry/vbase2" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "structure" - }, - { - "@value": "classification" + "@value": "life science" }, { - "@value": "genome" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://supfam.org/SUPERFAMILY/" + "@id": "http://www.vbase2.org/vbase2.php" }, - "https://bioregistry.io/schema/#0000005": "SSF57615", - "https://bioregistry.io/schema/#0000006": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1", + "https://bioregistry.io/schema/#0000005": "humIGHV025", + "https://bioregistry.io/schema/#0000006": "http://www.vbase2.org/vgene.php?id=$1", "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1297-9725" + }, + "https://bioregistry.io/schema/#0000024": "http://www.vbase2.org/vgene.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF57615" + "@id": "http://www.vbase2.org/vgene.php?id=humIGHV025" }, "https://bioregistry.io/schema/#0000029": { - "@value": "supfam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P5501", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "http://www.wikidata.org/entity/P592", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@value": "vbase2" } }, { - "@id": "https://www.obofoundry.org/ontology/sao", + "@id": "https://bioregistry.io/registry/nando", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nanbyo Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/NANDO" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NANDO" + }, + { + "@id": "https://registry.identifiers.org/registry/nando" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nanbyodata.jp/" + }, + "https://bioregistry.io/schema/#0000005": "1200031", + "https://bioregistry.io/schema/#0000006": "https://nanbyodata.jp/disease/NANDO:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/NANDO/14/nando.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N1dbd0a5640f74b8fbcc7f4ee551d82ae" + }, + "https://bioregistry.io/schema/#0000024": "https://nanbyodata.jp/disease/NANDO:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://nanbyodata.jp/disease/NANDO:1200031" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nando" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "_:N1dbd0a5640f74b8fbcc7f4ee551d82ae", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Kota Ninomiya" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kninomiya-mope@g.ecc.u-tokyo.ac.jp" } }, { - "@id": "https://bioregistry.io/registry/obcs", + "@id": "https://bioregistry.io/registry/goa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.", + "http://purl.org/dc/terms/description": "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obcs/obcs" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Biological and Clinical Statistics" + "@value": "Gene Ontology Annotation Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/OBCS" - }, - { - "@id": "http://www.ontobee.org/ontology/OBCS" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOA" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OBCS" + "@id": "https://registry.identifiers.org/registry/goa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS" + "@id": "https://fairsharing.org/FAIRsharing.7zffgc" }, { - "@id": "https://www.obofoundry.org/ontology/obcs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa" }, { - "@id": "https://fairsharing.org/FAIRsharing.5p12xh" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GOA" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs" + "@id": "https://registry.bio2kg.org/resource/goa" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "medical informatics" - }, - { - "@value": "obo" + "@value": "biology" }, { "@value": "ontology" }, { - "@value": "biology" - }, - { - "@value": "biomedical science" + "@value": "life science" }, { - "@value": "statistics" + "@value": "protein" }, { - "@value": "medicine" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obcs/obcs" + "@id": "https://www.ebi.ac.uk/GOA/" }, - "https://bioregistry.io/schema/#0000005": "0000121", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBCS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/obcs.owl" + "https://bioregistry.io/schema/#0000005": "P12345", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1", + "https://bioregistry.io/schema/#0000008": "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2999-0103" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBCS_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OBCS_0000121" + "@id": "https://www.ebi.ac.uk/QuickGO/GProtein?ac=P12345" }, "https://bioregistry.io/schema/#0000029": { - "@value": "obcs" + "@value": "goa" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro", + "@id": "https://bioregistry.io/metaregistry/biocontext/RBK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SWO", + "@id": "https://registry.identifiers.org/registry/hovergen", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN", + "@id": "http://aber-owl.net/ontology/MPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST", + "@id": "http://aber-owl.net/ontology/OGSF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/loqate", + "@id": "https://bioregistry.io/registry/bacdive", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library", + "http://purl.org/dc/terms/description": "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The localization and quantitation atlas of the yeast proteome" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/loqate" + "@value": "BacDive" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/bacdive" + }, + { + "@id": "http://www.wikidata.org/entity/P2946" + }, + { + "@id": "https://www.re3data.org/repository/r3d100013060" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.aSszvY" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "microbiology" + }, + { + "@value": "biodiversity" + }, + { + "@value": "life science" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.weizmann.ac.il/molgen/loqate/" + "@id": "https://bacdive.dsmz.de/" }, - "https://bioregistry.io/schema/#0000005": "1001", - "https://bioregistry.io/schema/#0000006": "http://www.weizmann.ac.il/molgen/loqate/gene/view/$1", + "https://bioregistry.io/schema/#0000005": "131392", + "https://bioregistry.io/schema/#0000006": "https://bacdive.dsmz.de/strain/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7805-0660" }, - "https://bioregistry.io/schema/#0000024": "http://www.weizmann.ac.il/molgen/loqate/gene/view/", + "https://bioregistry.io/schema/#0000024": "https://bacdive.dsmz.de/strain/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.weizmann.ac.il/molgen/loqate/gene/view/1001" + "@id": "https://bacdive.dsmz.de/strain/131392" }, "https://bioregistry.io/schema/#0000029": { - "@value": "loqate" + "@value": "bacdive" } }, { - "@id": "http://www.wikidata.org/entity/P4926", + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro", + "@id": "https://www.obofoundry.org/ontology/bootstrep", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene", + "@id": "https://www.obofoundry.org/ontology/mamo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.re3data.org/repository/r3d100010795", + "@id": "https://bioregistry.io/metaregistry/go/resolve/SO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/ncbi.protein", + "@id": "https://registry.bio2kg.org/resource/ehdaa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla", + "@id": "https://fairsharing.org/FAIRsharing.zx2ztd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322", + "@id": "https://registry.identifiers.org/registry/neurondb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/cob", + "@id": "https://bioregistry.io/registry/myco.marinum", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.", + "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OBOFoundry/COB" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Core Ontology for Biology and Biomedicine" + "@value": "MycoBrowser marinum" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/COB" - }, - { - "@id": "http://aber-owl.net/ontology/COB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum" }, { - "@id": "http://www.ontobee.org/ontology/COB" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.MARINUM" }, { - "@id": "https://www.obofoundry.org/ontology/cob" + "@id": "https://registry.bio2kg.org/resource/myco.marinum" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob" + "@id": "https://registry.identifiers.org/registry/myco.marinum" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "genome" }, { - "@value": "ontology" + "@value": "sequence" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://obofoundry.org/COB/" - }, - "https://bioregistry.io/schema/#0000005": "0000080", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COB_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cob.owl" + "@id": "http://mycobrowser.epfl.ch/marinolist.html" }, + "https://bioregistry.io/schema/#0000005": "MMAR_2462", + "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1", + "https://bioregistry.io/schema/#0000008": "^MMAR\\_\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8457-6693" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COB_", + "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/COB_0000080" + "@id": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=MMAR_2462" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cob" + "@value": "myco.marinum" } }, { - "@id": "https://orcid.org/0000-0001-6098-6412", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wyeth W. Wasserman" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wyeth@cmmt.ubc.ca" + "@id": "https://www.re3data.org/repository/r3d100010604", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://fairsharing.org/FAIRsharing.askzq4", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker", + "@id": "https://bioportal.bioontology.org/ontologies/PROPREO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4ef690", + "@id": "https://bartoc.org/en/node/391", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "http://www.ontobee.org/ontology/OPMI", + "@id": "http://aber-owl.net/ontology/DINTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/HP_O", + "@id": "https://registry.identifiers.org/registry/kegg.pathway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/nando", + "@id": "https://bioregistry.io/registry/dbest", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan.", + "http://purl.org/dc/terms/description": "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nanbyo Disease Ontology" + "@value": "EST database maintained at the NCBI." }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/nando" + "@id": "https://fairsharing.org/FAIRsharing.v9fya8" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NANDO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest" }, { - "@id": "http://aber-owl.net/ontology/NANDO" + "@id": "https://registry.bio2kg.org/resource/dbest" + }, + { + "@id": "https://registry.identifiers.org/registry/dbest" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010648" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST" + }, + { + "@id": "http://edamontology.org/data_1105" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "dna" + }, + { + "@value": "life science" + }, + { + "@value": "bioinformatics" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nanbyodata.jp/" - }, - "https://bioregistry.io/schema/#0000005": "1200031", - "https://bioregistry.io/schema/#0000006": "https://nanbyodata.jp/disease/NANDO:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/NANDO/14/nando.owl" + "@id": "https://www.ncbi.nlm.nih.gov/nucest" }, + "https://bioregistry.io/schema/#0000005": "BP100000", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucest/$1", + "https://bioregistry.io/schema/#0000008": "^([A-Z]+)?\\d+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N0e778a949ea94c0da609abeb109263f3" - }, - "https://bioregistry.io/schema/#0000024": "https://nanbyodata.jp/disease/NANDO:", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucest/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://nanbyodata.jp/disease/NANDO:1200031" + "@id": "https://www.ncbi.nlm.nih.gov/nucest/BP100000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nando" - } - }, - { - "@id": "_:N0e778a949ea94c0da609abeb109263f3", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kota Ninomiya" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kninomiya-mope@g.ecc.u-tokyo.ac.jp" + "@value": "dbest" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna", + "@id": "https://registry.identifiers.org/registry/bigg.reaction", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/bartoc", + "@id": "https://bioregistry.io/registry/worms", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO).", + "http://purl.org/dc/terms/description": "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/gbv/bartoc.org" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Basic Register of Thesauri, Ontologies & Classifications" + "@value": "WoRMS-ID for taxa" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/2054" + "@id": "http://www.wikidata.org/entity/P850" }, { - "@id": "https://fairsharing.org/FAIRsharing.f1777e" + "@id": "https://fairsharing.org/FAIRsharing.7g1bzj" }, { - "@id": "http://www.wikidata.org/entity/P2689" + "@id": "https://bartoc.org/en/node/720" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms" + }, + { + "@id": "https://registry.identifiers.org/registry/worms" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology and terminology" + "@value": "biodiversity" }, { - "@value": "knowledge and information systems" + "@value": "environmental science" + }, + { + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bartoc.org" - }, - "https://bioregistry.io/schema/#0000005": "241", - "https://bioregistry.io/schema/#0000006": "https://bartoc.org/en/node/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7613-4123" - }, - "https://bioregistry.io/schema/#0000024": "https://bartoc.org/en/node/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/048vdhs48" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bartoc.org/en/node/241" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bartoc" - } - }, - { - "@id": "https://bioregistry.io/registry/babelon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/babelon" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Babelon" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://monarch-initiative.github.io/babelon/" + "@id": "http://www.marinespecies.org/" }, - "https://bioregistry.io/schema/#0000005": "translation_language", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/babelon/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z][a-z0-9_]+[a-z0-9]$", + "https://bioregistry.io/schema/#0000005": "146421", + "https://bioregistry.io/schema/#0000006": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7356-1779" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0002-8160-7941" }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/babelon/", + "https://bioregistry.io/schema/#0000024": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/babelon/translation_language" + "@id": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=146421" }, "https://bioregistry.io/schema/#0000029": { - "@value": "babelon" + "@value": "worms" } }, { - "@id": "https://fairsharing.org/FAIRsharing.q3b39v", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_320", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://registry.bio2kg.org/resource/homd.seq", + "@id": "http://www.ontobee.org/ontology/MCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX", + "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/slctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)", + "@id": "https://www.obofoundry.org/ontology/hom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sri Lanka Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://slctr.lk/" - }, - "https://bioregistry.io/schema/#0000005": "SLCTR/2023/010", - "https://bioregistry.io/schema/#0000008": "^SLCTR/\\d{4}/\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "slctr" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/cbioportal", + "@id": "https://fairsharing.org/FAIRsharing.8qcbs0", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/cordis.article", + "@id": "https://bioregistry.io/registry/transportdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).", + "http://purl.org/dc/terms/description": "TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CORDIS Article" + "@value": "TransportDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/transportdb" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cordis.europa.eu/" + "@id": "http://www.membranetransport.org" }, - "https://bioregistry.io/schema/#0000005": "436605", - "https://bioregistry.io/schema/#0000006": "https://cordis.europa.eu/article/id/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "MMP0523", + "https://bioregistry.io/schema/#0000006": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cordis.europa.eu/article/id/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cordis.europa.eu/article/id/436605" + "@id": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=MMP0523" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cordis.article" + "@value": "transportdb" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT", + "@id": "http://aber-owl.net/ontology/DISDRIV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIGENE", + "@id": "https://semanticscience.org/resource/CHEMINF_000302", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://fairsharing.org/FAIRsharing.j7j53", + "@id": "https://registry.bio2kg.org/resource/pmap.substratedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/ygob", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/hpa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes.", + "http://purl.org/dc/terms/description": "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Genome Order Browser" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/ygob" + "@value": "Human Protein Atlas tissue profile information" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100010931" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA" + }, + { + "@id": "https://registry.bio2kg.org/resource/hpa" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j0t0pe" + }, + { + "@id": "https://registry.identifiers.org/registry/hpa" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HPA" + }, + { + "@id": "https://www.uniprot.org/database/DB-0046" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "transcriptomics" }, { - "@value": "gene" + "@value": "systems biology" + }, + { + "@value": "protein" + }, + { + "@value": "biomedical science" + }, + { + "@value": "proteomics" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://wolfe.gen.tcd.ie/ygob" - }, - "https://bioregistry.io/schema/#0000005": "ADH1", - "https://bioregistry.io/schema/#0000006": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/hgnc.symbol" + "@id": "http://www.proteinatlas.org/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "ENSG00000026508", + "https://bioregistry.io/schema/#0000006": "http://www.proteinatlas.org/$1", + "https://bioregistry.io/schema/#0000008": "^ENSG\\d{11}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4858-8056" }, - "https://bioregistry.io/schema/#0000024": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=", + "https://bioregistry.io/schema/#0000024": "http://www.proteinatlas.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=ADH1" + "@id": "http://www.proteinatlas.org/ENSG00000026508" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ygob" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/gaz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7k8zh0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/eupath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/worms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://orcid.org/0000-0002-7591-0020", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jason E. Stajich" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jason.stajich@ucr.edu" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "hpa" } }, { - "@id": "https://bioregistry.io/registry/mgnify.analysis", + "@id": "https://bioregistry.io/registry/inaturalist.user", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Analyses of microbiome data within MGnify", + "http://purl.org/dc/terms/description": "Identifier for a user in iNaturalist", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MGnify Analysis" + "@value": "iNaturalist User" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "person" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/metagenomics/" + "@id": "https://www.inaturalist.org/users" }, - "https://bioregistry.io/schema/#0000005": "MGYA00002270", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/analyses/$1", - "https://bioregistry.io/schema/#0000008": "^MGYA\\d+$", + "https://bioregistry.io/schema/#0000005": "1426686", + "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/users/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/analyses/", + "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/users/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/metagenomics/analyses/MGYA00002270" + "@id": "https://www.inaturalist.org/users/1426686" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mgnify.analysis" - } - }, - { - "@id": "https://orcid.org/0000-0002-0851-6883", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Jennifer C. Giron" - }, - { - "@value": "Jennifer C. Girón" - } - ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "entiminae@gmail.com" + "@value": "inaturalist.user" } }, { - "@id": "https://fairsharing.org/FAIRsharing.85k1jm", + "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/nbrc", + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STRAIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA", + "@id": "https://www.re3data.org/repository/r3d100010137", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG", + "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound", + "@id": "https://fairsharing.org/FAIRsharing.ckd4rf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM", + "@id": "https://www.uniprot.org/database/DB-0024", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/rapdb.locus", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4c0b6b", + "@id": "https://bioregistry.io/metaregistry/biocontext/EUPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb", + "@id": "http://www.ontobee.org/ontology/FLOPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro", + "@id": "http://aber-owl.net/ontology/REX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound", + "@id": "https://bioregistry.io/registry/gwascentral.phenotype", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GWAS Central Phenotype" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE" + }, + { + "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.gwascentral.org/phenotypes" + }, + "https://bioregistry.io/schema/#0000005": "HGVPM623", + "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/phenotype/$1", + "https://bioregistry.io/schema/#0000008": "^HGVPM\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/phenotype/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.gwascentral.org/phenotype/HGVPM623" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gwascentral.phenotype" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSDO", + "@id": "https://registry.identifiers.org/registry/umbbd.rule", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-1373-1705", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clare Pilgrim" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cp390@cam.ac.uk" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB", + "@id": "https://fairsharing.org/FAIRsharing.tw4q8x", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/aceview.worm", + "@id": "https://bioregistry.io/registry/co_338", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression.", + "http://purl.org/dc/terms/description": "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Aceview Worm" + "@value": "Chickpea ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/aceview.worm" + "@id": "https://fairsharing.org/FAIRsharing.js20q3" }, { - "@id": "https://registry.identifiers.org/registry/aceview.worm" + "@id": "https://cropontology.org/ontology/CO_338" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_338" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACEVIEW.WORM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "rna" + "@value": "agriculture" }, { - "@value": "dna" + "@value": "botany" }, { - "@value": "gene" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm" + "@id": "https://cropontology.org/ontology/CO_338/Chickpea" + }, + "https://bioregistry.io/schema/#0000005": "0000138", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_338:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_338/Chickpea/owl" }, - "https://bioregistry.io/schema/#0000005": "aap-1", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9-]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0091-7981" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_338:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=aap-1" + "@id": "https://cropontology.org/rdf/CO_338:0000138" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aceview.worm" + "@value": "co_338" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb", + "@id": "http://www.wikidata.org/entity/P4495", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://fairsharing.org/FAIRsharing.pda11d", + "@id": "https://registry.bio2kg.org/resource/orphanet", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PATHWAY", + "@id": "https://bioregistry.io/metaregistry/biocontext/PMP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/crisprdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNII", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/chemidplus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.", + "http://purl.org/dc/terms/description": "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CRISPRdb" + "@value": "ChemIDplus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB" + "@id": "http://edamontology.org/data_2658" }, { - "@id": "https://fairsharing.org/FAIRsharing.7sfedh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus" }, { - "@id": "https://registry.identifiers.org/registry/crisprdb" + "@id": "https://fairsharing.org/FAIRsharing.5949vn" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS" + }, + { + "@id": "https://registry.bio2kg.org/resource/chemidplus" + }, + { + "@id": "https://registry.identifiers.org/registry/chemidplus" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://crispr.i2bc.paris-saclay.fr/" - }, - "https://bioregistry.io/schema/#0000005": "551115", - "https://bioregistry.io/schema/#0000006": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8951-466X" - }, - "https://bioregistry.io/schema/#0000024": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=551115" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "crisprdb" - } - }, - { - "@id": "http://www.wikidata.org/entity/P10538", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/phytozome.locus", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Genome Network" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/phytozome.locus" + "@value": "molecules" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS" + "@value": "structure" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome" + "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.phytozome.net/" + "@id": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp" }, - "https://bioregistry.io/schema/#0000005": "Glyma0021s00410", - "https://bioregistry.io/schema/#0000006": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000005": "57-27-2", + "https://bioregistry.io/schema/#0000006": "https://chem.nlm.nih.gov/chemidplus/rn/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+\\-\\d+\\-\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "JGI Phytozome" + "@value": "ChemIDplus" }, - "https://bioregistry.io/schema/#0000024": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:", + "https://bioregistry.io/schema/#0000024": "https://chem.nlm.nih.gov/chemidplus/rn/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:Glyma0021s00410" + "@id": "https://chem.nlm.nih.gov/chemidplus/rn/57-27-2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "phytozome.locus" + "@value": "chemidplus" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://www.re3data.org/repository/r3d100012928", + "@id": "https://fairsharing.org/FAIRsharing.4ef690", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/pgs", + "@id": "https://bioregistry.io/registry/splash", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation.", + "http://purl.org/dc/terms/description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Polygenic Score Catalog" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/pgs" + "@value": "Spectra Hash Code" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SPLASH" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash" + }, + { + "@id": "https://registry.identifiers.org/registry/splash" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pgscatalog.org" + "@id": "http://mona.fiehnlab.ucdavis.edu/" }, - "https://bioregistry.io/schema/#0000005": "PGS000018", - "https://bioregistry.io/schema/#0000006": "https://www.pgscatalog.org/pgs/$1", - "https://bioregistry.io/schema/#0000008": "^PGS[0-9]{6}$", + "https://bioregistry.io/schema/#0000005": "splash10-0zq2000000-77302b0326a418630a84", + "https://bioregistry.io/schema/#0000006": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1", + "https://bioregistry.io/schema/#0000008": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.pgscatalog.org/pgs/", + "https://bioregistry.io/schema/#0000024": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.pgscatalog.org/pgs/PGS000018" + "@id": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/splash10-0zq2000000-77302b0326a418630a84" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pgs" - } - }, - { - "@id": "http://www.wikidata.org/entity/P496", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/greengenes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/geneannot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/omit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/COLAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "splash" } }, { - "@id": "https://bioregistry.io/registry/subtiwiki", + "@id": "https://bioregistry.io/registry/dggr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon.", + "http://purl.org/dc/terms/description": "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SubtiWiki" + "@value": "Kyoto Stock Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.2ck3st" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki" - }, - { - "@id": "https://registry.bio2kg.org/resource/subtiwiki" - }, - { - "@id": "https://registry.identifiers.org/registry/subtiwiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTIWIKI" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "rna" + "@value": "genomics" }, { - "@value": "dna" + "@value": "organism supplier" }, { - "@value": "gene" + "@value": "drosophila" }, { - "@value": "protein" + "@value": "genetic resource" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page" + "@id": "http://kyotofly.kit.jp/cgi-bin/stocks/data_search.cgi" }, - "https://bioregistry.io/schema/#0000005": "BSU29180", - "https://bioregistry.io/schema/#0000006": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1", - "https://bioregistry.io/schema/#0000008": "^BSU\\d{5}$", + "https://bioregistry.io/schema/#0000005": "918902", + "https://bioregistry.io/schema/#0000006": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/", + "https://bioregistry.io/schema/#0000024": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/BSU29180" + "@id": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=918902" }, "https://bioregistry.io/schema/#0000029": { - "@value": "subtiwiki" - } - }, - { - "@id": "http://aber-owl.net/ontology/HTN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://edamontology.org/data_1129", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@value": "dggr" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE", + "@id": "https://bioregistry.io/registry/perkinelmer", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PerkinElmer cell line collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.perkinelmer.com/" + }, + "https://bioregistry.io/schema/#0000005": "SCC111", + "https://bioregistry.io/schema/#0000006": "https://www.perkinelmer.com/searchresult?searchName=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.perkinelmer.com/searchresult?searchName=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.perkinelmer.com/searchresult?searchName=SCC111" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "perkinelmer" } }, { - "@id": "https://bioregistry.io/registry/ino", + "@id": "https://bioregistry.io/registry/merops.entry", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.", + "http://purl.org/dc/terms/description": "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/INO-ontology/ino" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Interaction Network Ontology" + "@value": "MEROPS Entry" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/INO" + "@id": "https://registry.bio2kg.org/resource/merops" }, { - "@id": "https://fairsharing.org/FAIRsharing.mm72as" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino" + "@id": "https://registry.identifiers.org/registry/merops.inhibitor" }, { - "@id": "http://www.ontobee.org/ontology/INO" + "@id": "https://fairsharing.org/FAIRsharing.2s4n8r" }, { - "@id": "https://www.obofoundry.org/ontology/ino" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR" }, { - "@id": "https://bioportal.bioontology.org/ontologies/INO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO" + "@id": "http://edamontology.org/data_2629" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -102655,679 +99444,483 @@ "@value": "life science" }, { - "@value": "obo" + "@value": "structure" }, { - "@value": "ontology" + "@value": "enzyme" + }, + { + "@value": "protein" + }, + { + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/INO-ontology/ino" - }, - "https://bioregistry.io/schema/#0000005": "0000003", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/INO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ino.owl" + "@id": "http://merops.sanger.ac.uk/index.htm" }, + "https://bioregistry.io/schema/#0000005": "I31.952", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1", + "https://bioregistry.io/schema/#0000008": "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "https://bioregistry.io/schema/#0000023": { + "@value": "merops.inhibitor" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/INO_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/INO_0000003" + "@id": "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=I31.952" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ino" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CPC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "merops.entry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro", + "@id": "https://registry.bio2kg.org/resource/tcdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID", + "@id": "http://aber-owl.net/ontology/UBERON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/redfly", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs).", + "@id": "https://fairsharing.org/FAIRsharing.hsbpq3", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Regulatory Elements Database for Drosophila" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/redfly" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "regulation" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://redfly.ccr.buffalo.edu" - }, - "https://bioregistry.io/schema/#0000005": "8", - "https://bioregistry.io/schema/#0000006": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=8" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "redfly" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0001-6330-7526", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/fyeco" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Val Wood" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "vw253@cam.ac.uk" + "@id": "https://registry.identifiers.org/registry/paleodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/bold", + "@id": "https://www.obofoundry.org/ontology/pw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/genedb", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://www.wikidata.org/entity/P1391", + "@id": "https://fairsharing.org/FAIRsharing.aVmpKl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/diseasesdb", + "@id": "https://bioregistry.io/registry/igsr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.", + "http://purl.org/dc/terms/description": "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Diseases Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P557" + "@value": "International Genome Sample Resource" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010180" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "genomics" + }, + { + "@value": "comparative genomics" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.diseasesdatabase.com/" + "@id": "https://www.internationalgenome.org/" }, - "https://bioregistry.io/schema/#0000005": "1784", - "https://bioregistry.io/schema/#0000006": "https://www.diseasesdatabase.com/ddb$1.htm", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "NA06985", + "https://bioregistry.io/schema/#0000006": "https://www.internationalgenome.org/data-portal/sample/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/diseasesdb:", + "https://bioregistry.io/schema/#0000024": "https://www.internationalgenome.org/data-portal/sample/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.diseasesdatabase.com/ddb1784.htm" + "@id": "https://www.internationalgenome.org/data-portal/sample/NA06985" }, "https://bioregistry.io/schema/#0000029": { - "@value": "diseasesdb" + "@value": "igsr" } }, { - "@id": "https://registry.identifiers.org/registry/cog", + "@id": "https://registry.bio2kg.org/resource/myco.marinum", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PSIPAR", + "@id": "https://www.uniprot.org/database/DB-0053", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://fairsharing.org/FAIRsharing.egv2cz", + "@id": "https://registry.identifiers.org/registry/knapsack", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc", + "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/planttfdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors.", + "@id": "https://registry.identifiers.org/registry/norine", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Transcription Factor Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.ex3fqk" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLANTTFDB" - }, - { - "@id": "https://registry.bio2kg.org/resource/planttfdb" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011301" - }, - { - "@id": "https://registry.identifiers.org/registry/planttfdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "protein" - }, - { - "@value": "small molecule" - }, - { - "@value": "rna" - }, - { - "@value": "life science" - }, - { - "@value": "dna" - }, - { - "@value": "regulation" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://planttfdb.cbi.pku.edu.cn" - }, - "https://bioregistry.io/schema/#0000005": "Ath_AT1G01030.1", - "https://bioregistry.io/schema/#0000006": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=Ath_AT1G01030.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "planttfdb" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/apollosv", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/aeon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.", + "http://purl.org/dc/terms/description": "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ApolloDev/apollo-sv" + "@id": "https://github.com/tibonto/aeon" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Apollo Structured Vocabulary" + "@value": "Academic Event Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV" - }, - { - "@id": "http://aber-owl.net/ontology/APOLLO_SV" - }, - { - "@id": "http://www.ontobee.org/ontology/APOLLO_SV" - }, - { - "@id": "https://www.obofoundry.org/ontology/apollo_sv" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ngv2xx" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "epidemiology" - }, - { - "@value": "population genetics" - }, - { - "@value": "biomedical science" - }, - { - "@value": "ecology" - }, - { - "@value": "obo" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ApolloDev/apollo-sv" + "@id": "https://tibonto.github.io/aeon/" }, - "https://bioregistry.io/schema/#0000005": "00000443", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/APOLLO_SV_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AEON_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/apollo_sv.owl" + "@id": "https://raw.githubusercontent.com/tibonto/aeon/main/aeon.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9881-1017" + "@id": "https://orcid.org/0000-0002-1595-3213" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/APOLLO_SV_", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AEON_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/APOLLO_SV_00000443" + "@id": "http://purl.obolibrary.org/obo/AEON_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "apollosv" + "@value": "aeon" } }, { - "@id": "https://bioregistry.io/registry/kegg", + "@id": "https://bioregistry.io/registry/spike.map", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/kegg.environ" - }, - { - "@id": "https://bioregistry.io/registry/kegg.rclass" - }, - { - "@id": "https://bioregistry.io/registry/kegg.drug" - }, - { - "@id": "https://bioregistry.io/registry/kegg.enzyme" - }, - { - "@id": "https://bioregistry.io/registry/kegg.brite" - }, - { - "@id": "https://bioregistry.io/registry/kegg.dgroup" - }, - { - "@id": "https://bioregistry.io/registry/kegg.compound" - }, - { - "@id": "https://bioregistry.io/registry/kegg.reaction" - }, - { - "@id": "https://bioregistry.io/registry/kegg.glycan" - }, - { - "@id": "https://bioregistry.io/registry/kegg.metagenome" - }, - { - "@id": "https://bioregistry.io/registry/kegg.orthology" - }, - { - "@id": "https://bioregistry.io/registry/kegg.genes" - }, - { - "@id": "https://bioregistry.io/registry/kegg.disease" - }, - { - "@id": "https://bioregistry.io/registry/kegg.pathway" - }, - { - "@id": "https://bioregistry.io/registry/kegg.genome" - }, - { - "@id": "https://bioregistry.io/registry/kegg.ligand" - }, - { - "@id": "https://bioregistry.io/registry/kegg.module" - } - ], + "http://purl.org/dc/terms/description": "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kyoto Encyclopedia of Genes and Genomes" + "@value": "SPIKE Map" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/kegg" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000409" + "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG" + "@id": "https://registry.identifiers.org/registry/spike.map" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG" - }, + "@id": "https://registry.bio2kg.org/resource/spike" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg" + "@value": "dna" }, { - "@id": "https://www.uniprot.org/database/DB-0053" + "@value": "gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.kegg.jp/" - }, - "https://bioregistry.io/schema/#0000005": "hsa00190", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000023": { - "@value": "KEGG" + "@id": "http://www.cs.tau.ac.il/~spike/" }, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000005": "spike00001", + "https://bioregistry.io/schema/#0000006": "http://www.cs.tau.ac.il/~spike/maps/$1.html", + "https://bioregistry.io/schema/#0000008": "^spike\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/spike.map:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/hsa00190" + "@id": "http://www.cs.tau.ac.il/~spike/maps/spike00001.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "spike.map" } }, { - "@id": "http://edamontology.org/data_1127", + "@id": "https://registry.identifiers.org/registry/fbol", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope", + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN", + "@id": "https://fairsharing.org/FAIRsharing.f2c119", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/npo", + "@id": "https://bioregistry.io/registry/rnacentral", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.", + "http://purl.org/dc/terms/description": "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sobolevnrm/npo" + "@id": "https://github.com/RNAcentral/" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NanoParticle Ontology" + "@value": "RNACentral" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.vy0p71" + "@id": "http://www.wikidata.org/entity/P8697" }, { - "@id": "http://aber-owl.net/ontology/NPO" + "@id": "https://fairsharing.org/FAIRsharing.KcCjL7" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NPO" + "@id": "http://edamontology.org/data_3856" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RNAcentral" + }, + { + "@id": "https://registry.identifiers.org/registry/rnacentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "bioinformatics" }, { - "@value": "ontology" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/NPO" - }, - "https://bioregistry.io/schema/#0000005": "1731", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/npo#NPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/NPO/31/npo.owl" + "@id": "https://rnacentral.org/" }, + "https://bioregistry.io/schema/#0000005": "URS0000759CF4", + "https://bioregistry.io/schema/#0000006": "https://rnacentral.org/rna/$1", + "https://bioregistry.io/schema/#0000008": "^URS[0-9A-F]{10}(\\_\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5892-6506" + "@id": "https://orcid.org/0000-0002-6497-2883" }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/npo#NPO_", + "https://bioregistry.io/schema/#0000023": { + "@value": "LNCRNADB" + }, + "https://bioregistry.io/schema/#0000024": "https://rnacentral.org/rna/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/npo#NPO_1731" + "@id": "https://rnacentral.org/rna/URS0000759CF4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "npo" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/eggnog", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/RBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "rnacentral" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/ordb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/csa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tuberculist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/vbo", + "@id": "https://bioregistry.io/registry/iceberg.family", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/monarch-initiative/vertebrate-breed-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Breed Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo" - }, - { - "@id": "http://aber-owl.net/ontology/VBO" - }, + "http://purl.org/dc/terms/description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "http://www.ontobee.org/ontology/VBO" + "@id": "https://bioregistry.io/registry/iceberg" }, { - "@id": "https://www.obofoundry.org/ontology/vbo" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ICEberg family" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/iceberg.family" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/monarch-initiative/vertebrate-breed-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000038", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vbo.owl" + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_fam.php" }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4142-7153" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VBO_", + "https://bioregistry.io/schema/#0000024": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VBO_0000038" + "@id": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vbo" + "@value": "iceberg.family" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb", + "@id": "https://fairsharing.org/FAIRsharing.qrrvyk", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/prodom", + "@id": "https://registry.bio2kg.org/resource/wbphenotype", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/psi.mi", + "@id": "https://bioregistry.io/metaregistry/go/resolve/CASSPC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "http://www.wikidata.org/entity/P1294", + "@id": "https://www.uniprot.org/database/DB-0239", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/ietf.language", + "@id": "https://bioregistry.io/registry/col", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Shorthand representations of languages and their subtypes", + "http://purl.org/dc/terms/description": "Identifier of a taxon or synonym in the Catalogue of Life", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Internet Engineering Task Force Language Tag" + "@value": "Catalogue of Life" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/2022" + "@id": "https://registry.identifiers.org/registry/col" }, { - "@id": "http://www.wikidata.org/entity/P305" + "@id": "https://bartoc.org/en/node/1915" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry" + "@id": "https://www.checklistbank.org" }, - "https://bioregistry.io/schema/#0000005": "en-GB", - "https://bioregistry.io/schema/#0000008": "^\\w{2,3}(-\\w+)?$", + "https://bioregistry.io/schema/#0000005": "4QHKG", + "https://bioregistry.io/schema/#0000006": "https://www.checklistbank.org/dataset/3LR/taxon/$1", + "https://bioregistry.io/schema/#0000008": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "bcp47" + "https://bioregistry.io/schema/#0000024": "https://www.checklistbank.org/dataset/3LR/taxon/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.checklistbank.org/dataset/3LR/taxon/4QHKG" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ietf.language" + "@value": "col" } }, { - "@id": "https://bioregistry.io/registry/edda", + "@id": "https://fairsharing.org/FAIRsharing.b4sa0w", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/oarcs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries.", + "http://purl.org/dc/terms/description": "OArCS is an ontology describing the Arthropod ciruclatory system.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/aszool/oarcs" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDDA Study Designs Taxonomy" + "@value": "Ontology of Arthropod Circulatory Systems" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/EDDA" + "@id": "https://www.obofoundry.org/ontology/oarcs" }, { - "@id": "https://fairsharing.org/FAIRsharing.2ffmsb" + "@id": "http://aber-owl.net/ontology/OARCS" }, { - "@id": "http://aber-owl.net/ontology/EDDA" + "@id": "http://www.ontobee.org/ontology/OARCS" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OARCS" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.yqn857" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OARCS" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -103335,559 +99928,452 @@ "@value": "ontology" }, { - "@value": "medicine" + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "angiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/EDDA" + "@id": "https://github.com/aszool/oarcs" }, - "https://bioregistry.io/schema/#0000005": "health_care_quality_assessment", - "https://bioregistry.io/schema/#0000006": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1", + "https://bioregistry.io/schema/#0000005": "0000029", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OARCS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/EDDA/11/edda.owl" + "@id": "http://purl.obolibrary.org/obo/oarcs.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8537-9077" + "@id": "https://orcid.org/0000-0002-5640-5491" }, - "https://bioregistry.io/schema/#0000024": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OARCS_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#health_care_quality_assessment" + "@id": "http://purl.obolibrary.org/obo/OARCS_0000029" }, "https://bioregistry.io/schema/#0000029": { - "@value": "edda" + "@value": "oarcs" } }, { - "@id": "https://registry.identifiers.org/registry/microsporidia", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_335", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/sabiork.ec", + "@id": "https://bioregistry.io/registry/inchi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.", + "http://purl.org/dc/terms/description": "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SABIO-RK EC Record" + "@value": "InChI" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec" + "@id": "https://registry.identifiers.org/registry/inchi" }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.ec" + "@id": "https://fairsharing.org/FAIRsharing.ddk9t9" }, { - "@id": "https://registry.identifiers.org/registry/sabiork.ec" + "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI" + }, + { + "@id": "http://www.wikidata.org/entity/P234" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "knowledge and information systems" + }, + { + "@value": "cheminformatics" + }, + { + "@value": "chemistry" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "reaction" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sabiork.h-its.org/" - }, - "https://bioregistry.io/schema/#0000005": "2.7.1.1", - "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/newSearch?q=ecnumber:$1", - "https://bioregistry.io/schema/#0000008": "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/eccode" + "@id": "http://www.chemspider.com/" }, + "https://bioregistry.io/schema/#0000005": "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3", + "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/$1", + "https://bioregistry.io/schema/#0000008": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/newSearch?q=ecnumber:", + "https://bioregistry.io/schema/#0000024": "http://www.chemspider.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://sabiork.h-its.org/newSearch?q=ecnumber:2.7.1.1" + "@id": "http://www.chemspider.com/InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sabiork.ec" - } - }, - { - "@id": "http://aber-owl.net/ontology/GEXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMIT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "inchi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/astd", + "@id": "https://bioregistry.io/registry/ndex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier of an object from the ASTD database.", + "http://purl.org/dc/terms/description": "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ndexbio" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ASTD" + "@value": "Network Data Exchange" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2367" + "@id": "https://www.re3data.org/repository/r3d100012690" }, { - "@id": "https://registry.bio2kg.org/resource/astd" + "@id": "https://fairsharing.org/FAIRsharing.8nq9t6" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "alternative splicing" + "@value": "epidemiology" }, { - "@value": "transcript" + "@value": "microbiology" }, { - "@value": "gene" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/astd/" - }, - "https://bioregistry.io/schema/#0000005": "ENSG00000136147", - "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/astd/geneview.html?acc=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ensembl" + "@id": "https://www.ndexbio.org" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf", + "https://bioregistry.io/schema/#0000006": "https://www.ndexbio.org/viewer/networks/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8682-0568" }, - "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/astd/geneview.html?acc=", + "https://bioregistry.io/schema/#0000024": "https://www.ndexbio.org/viewer/networks/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ebi.ac.uk/astd/geneview.html?acc=ENSG00000136147" + "@id": "https://www.ndexbio.org/viewer/networks/aa78a43f-9c4d-11eb-9e72-0ac135e8bacf" }, "https://bioregistry.io/schema/#0000029": { - "@value": "astd" + "@value": "ndex" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000446", + "@id": "https://registry.bio2kg.org/resource/prosite", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/bartoc", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)." - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bartoc.org/en/node/18951" - }, - { - "@id": "https://bartoc.org/en/node/20052" - }, - { - "@id": "https://bartoc.org/en/node/216" - }, - { - "@id": "https://bartoc.org/en/node/1884" - }, - { - "@id": "https://bartoc.org/en/node/2021" - }, - { - "@id": "https://bartoc.org/en/node/445" - }, - { - "@id": "https://bartoc.org/en/node/576" - }, - { - "@id": "https://bartoc.org/en/node/571" - }, - { - "@id": "https://bartoc.org/en/node/20428" - }, - { - "@id": "https://bartoc.org/en/node/822" - }, - { - "@id": "https://bartoc.org/en/node/109" - }, - { - "@id": "https://bartoc.org/en/node/549" - }, - { - "@id": "https://bartoc.org/en/node/1028" - }, - { - "@id": "https://bartoc.org/en/node/430" - }, - { - "@id": "https://bartoc.org/en/node/572" - }, - { - "@id": "https://bartoc.org/en/node/449" - }, - { - "@id": "https://bartoc.org/en/node/528" - }, - { - "@id": "https://bartoc.org/en/node/20299" - }, - { - "@id": "https://bartoc.org/en/node/2053" - }, - { - "@id": "https://bartoc.org/en/node/17791" - }, - { - "@id": "https://bartoc.org/en/node/558" - }, - { - "@id": "https://bartoc.org/en/node/1237" - }, - { - "@id": "https://bartoc.org/en/node/2054" - }, - { - "@id": "https://bartoc.org/en/node/391" - }, - { - "@id": "https://bartoc.org/en/node/509" - }, - { - "@id": "https://bartoc.org/en/node/720" - }, - { - "@id": "https://bartoc.org/en/node/1937" - }, - { - "@id": "https://bartoc.org/en/node/454" - }, - { - "@id": "https://bartoc.org/en/node/20430" - }, - { - "@id": "https://bartoc.org/en/node/18206" - }, - { - "@id": "https://bartoc.org/en/node/581" - }, - { - "@id": "https://bartoc.org/en/node/18377" - }, - { - "@id": "https://bartoc.org/en/node/2022" - }, - { - "@id": "https://bartoc.org/en/node/671" - }, - { - "@id": "https://bartoc.org/en/node/305" - }, - { - "@id": "https://bartoc.org/en/node/447" - }, - { - "@id": "https://bartoc.org/en/node/1897" - }, - { - "@id": "https://bartoc.org/en/node/1895" - }, - { - "@id": "https://bartoc.org/en/node/1940" - }, - { - "@id": "https://bartoc.org/en/node/400" - }, - { - "@id": "https://bartoc.org/en/node/1915" - }, - { - "@id": "https://bartoc.org/en/node/16" - }, - { - "@id": "https://bartoc.org/en/node/20434" - }, - { - "@id": "https://bartoc.org/en/node/181" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Basic Register of Thesauri, Ontologies & Classifications" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://bartoc.org/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "181" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://bartoc.org/en/node/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0629-0446" + "@id": "https://fairsharing.org/FAIRsharing.ehe3yp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/foaf", + "@id": "https://registry.bio2kg.org/resource/kegg.metagenome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dqnfkg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/cldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.", + "http://purl.org/dc/terms/description": "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Friend of a Friend" + "@value": "Cell Line Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/foaf" + "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB" }, { - "@id": "http://aber-owl.net/ontology/foaf" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLDB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOAF" + "@id": "https://registry.identifiers.org/registry/cldb" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://xmlns.com/foaf/spec/" - }, - "https://bioregistry.io/schema/#0000005": "familyName", - "https://bioregistry.io/schema/#0000006": "http://xmlns.com/foaf/0.1/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/foaf/1/foaf.owl" + "@id": "http://bioinformatics.hsanmartino.it/hypercldb/indexes.html" }, + "https://bioregistry.io/schema/#0000005": "cl3603", + "https://bioregistry.io/schema/#0000006": "http://bioinformatics.hsanmartino.it/hypercldb/$1.html", + "https://bioregistry.io/schema/#0000008": "^(cl|tum)\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Ndfe615d02a6241f0848428d135ebbbd9" + "https://bioregistry.io/schema/#0000023": { + "@value": "hypercldb" }, - "https://bioregistry.io/schema/#0000024": "http://xmlns.com/foaf/0.1/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cldb:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://xmlns.com/foaf/0.1/familyName" + "@id": "http://bioinformatics.hsanmartino.it/hypercldb/cl3603.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "foaf" + "@value": "cldb" } }, { - "@id": "_:Ndfe615d02a6241f0848428d135ebbbd9", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rafael Gonçalves" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rafael.goncalves@stanford.edu" + "@id": "https://bioportal.bioontology.org/ontologies/LEPAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MS", + "@id": "http://edamontology.org/data_2641", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA", + "@id": "http://aber-owl.net/ontology/NBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/pseudomonas", + "@id": "https://www.re3data.org/repository/r3d100010803", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://aber-owl.net/ontology/VT", + "@id": "http://aber-owl.net/ontology/PSDO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/molbase.sheffield", + "@id": "https://bioregistry.io/schema/#0000019", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The responsible person for a resource" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has responsible" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000020" + } + }, + { + "@id": "https://bioregistry.io/registry/crop2ml", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.", + "http://purl.org/dc/terms/description": "CropMRespository is a database of soil and crop biophysical process models.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MolBase" + "@value": "CropMRepository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/crop2ml" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://winter.group.shef.ac.uk/molbase/" + "@id": "http://www.crop2ml.org" + }, + "https://bioregistry.io/schema/#0000005": "000000001", + "https://bioregistry.io/schema/#0000006": "http://www.crop2ml.org/cropmdb/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]{9}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.crop2ml.org/cropmdb/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.crop2ml.org/cropmdb/000000001" }, - "https://bioregistry.io/schema/#0000005": "1868", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "molbase.sheffield" + "@value": "crop2ml" } }, { - "@id": "https://registry.bio2kg.org/resource/biopixie", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/neurondb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.284e1z", + "@id": "https://bioportal.bioontology.org/ontologies/MIRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/smpdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ons", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/noncodev4.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ecao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.PLANT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/tads", + "@id": "https://bioregistry.io/registry/hogenom", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The anatomy of the Tick, Families: Ixodidae, Argassidae", + "http://purl.org/dc/terms/description": "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VEuPathDB-ontology/TADS" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tick Anatomy Ontology" + "@value": "Database of Complete Genome Homologous Genes Families" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/TADS" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8wm364" + "@id": "https://registry.identifiers.org/registry/hogenom" }, { - "@id": "https://www.obofoundry.org/ontology/tads" + "@id": "https://www.uniprot.org/database/DB-0044" }, { - "@id": "http://aber-owl.net/ontology/TADS" + "@id": "https://bioregistry.io/metaregistry/biocontext/HOGENOM" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads" + "@id": "https://fairsharing.org/FAIRsharing.qe8tz8" }, { - "@id": "http://www.ontobee.org/ontology/TADS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TADS" + "@id": "https://registry.bio2kg.org/resource/hogenom" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "phylogenetics" }, { - "@value": "ontology" + "@value": "phylogeny" }, { - "@value": "anatomy" + "@value": "sequence" + }, + { + "@value": "classification" }, { "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vectorbase.org/ontology-browser" - }, - "https://bioregistry.io/schema/#0000005": "0000547", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TADS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/tads.owl" + "@id": "http://pbil.univ-lyon1.fr/databases/hogenom/" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9370-918X" + "https://bioregistry.io/schema/#0000005": "HBG284870", + "https://bioregistry.io/schema/#0000006": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=HBG284870" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TADS_", "https://bioregistry.io/schema/#0000029": { - "@value": "tads" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/viaf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "hogenom" } }, { - "@id": "https://bioregistry.io/registry/dideo", + "@id": "https://bioregistry.io/registry/clao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology", + "http://purl.org/dc/terms/description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DIDEO/DIDEO" + "@id": "https://github.com/luis-gonzalez-m/Collembola" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" + "@value": "Collembola Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO" - }, - { - "@id": "http://www.ontobee.org/ontology/DIDEO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9y8f0n" + "@id": "http://aber-owl.net/ontology/CLAO" }, { - "@id": "http://aber-owl.net/ontology/DIDEO" + "@id": "http://www.ontobee.org/ontology/CLAO" }, { - "@id": "https://www.obofoundry.org/ontology/dideo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DIDEO" + "@id": "https://bioportal.bioontology.org/ontologies/CLAO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo" + "@id": "https://www.obofoundry.org/ontology/clao" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -103896,755 +100382,860 @@ }, { "@value": "ontology" - }, - { - "@value": "biochemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DIDEO/DIDEO" + "@id": "https://github.com/luis-gonzalez-m/Collembola" }, - "https://bioregistry.io/schema/#0000005": "00000180", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DIDEO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "0000088", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/dideo.owl" + "@id": "http://purl.obolibrary.org/obo/clao.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/ro" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1834-3856" + "@id": "https://orcid.org/0000-0002-9136-9932" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DIDEO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLAO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DIDEO_00000180" + "@id": "http://purl.obolibrary.org/obo/CLAO_0000088" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dideo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.wikidata.org/entity/P494", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/molbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "clao" } }, { - "@id": "https://bioregistry.io/registry/biomagresbank", + "@id": "https://bioregistry.io/registry/nlx.br", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://purl.org/dc/terms/description": "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999).", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/nif" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioMagResBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/biomagresbank" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" + "@value": "NIF Standard Ontology: Brain Regions" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "anatomy" + }, + { + "@value": "neuroscience" + }, + { + "@value": "brain regions" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bmrb.wisc.edu/" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, - "https://bioregistry.io/schema/#0000005": "10046", - "https://bioregistry.io/schema/#0000006": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1", + "https://bioregistry.io/schema/#0000005": "145", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=", + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXBR" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_br_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=10046" + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_br_145" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biomagresbank" + "@value": "nlx.br" } }, { - "@id": "http://aber-owl.net/ontology/PROCO", + "@id": "http://aber-owl.net/ontology/DATACITE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METABOLIGHTS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.rs2815", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio", + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P671", + "@id": "https://registry.identifiers.org/registry/meddra", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.y2qws7", + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/HAO", + "@id": "https://bioregistry.io/registry/gdc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genomic Data Commons Data Portal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc" + }, + { + "@id": "https://registry.identifiers.org/registry/gdc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GDC" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://gdc.cancer.gov" + }, + "https://bioregistry.io/schema/#0000005": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef", + "https://bioregistry.io/schema/#0000006": "https://portal.gdc.cancer.gov/cases/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://portal.gdc.cancer.gov/cases/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://portal.gdc.cancer.gov/cases/ae8c77fe-e6c8-44d5-8265-4a38c637bbef" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gdc" } }, { - "@id": "https://registry.identifiers.org/registry/protonet.proteincard", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/co_326", + "@id": "https://bioregistry.io/registry/scop", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Draft version", + "http://purl.org/dc/terms/description": "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Coconut ontology" + "@value": "Structural Classification of Proteins - Unique Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326" + "@id": "https://registry.bio2kg.org/resource/scop" }, { - "@id": "https://cropontology.org/ontology/CO_326" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop" + }, + { + "@id": "http://edamontology.org/data_1042" + }, + { + "@id": "https://registry.identifiers.org/registry/scop" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structure" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_326/Coconut" - }, - "https://bioregistry.io/schema/#0000005": "0000254", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_326:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_326/Coconut/owl" + "@id": "https://scop.berkeley.edu" }, + "https://bioregistry.io/schema/#0000005": "47419", + "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sunid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_326:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5153-9079" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "scop.sun" + }, + { + "@value": "scop.sunid" + } + ], + "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sunid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_326:0000254" + "@id": "http://scop.berkeley.edu/sunid=47419" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_326" + "@value": "scop" } }, { - "@id": "https://registry.identifiers.org/registry/gramene.gene", + "@id": "https://registry.bio2kg.org/resource/chemdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC", + "@id": "https://www.uniprot.org/database/DB-0013", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://orcid.org/0000-0002-6772-2775", + "@id": "https://bioregistry.io/metaregistry/biocontext/BCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0003-3248-7899", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dylan McGagh" + "@value": "Sabine Oesterle" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dylan.mcgagh@magd.ox.ac.uk" + "@value": "Sabine.Oesterle@sib.swiss" } }, { - "@id": "http://aber-owl.net/ontology/EPIO", + "@id": "http://www.ontobee.org/ontology/SBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.protein", + "@id": "https://bioregistry.io/registry/collagenmutdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Collagen Mutation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/cmd" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "gene" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.le.ac.uk/genetics/collagen/" + }, + "https://bioregistry.io/schema/#0000005": "COL3A1", + "https://bioregistry.io/schema/#0000006": "https://eds.gene.le.ac.uk/home.php?select_db=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/hgnc.symbol" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://eds.gene.le.ac.uk/home.php?select_db=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://eds.gene.le.ac.uk/home.php?select_db=COL3A1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "collagenmutdb" } }, { - "@id": "https://registry.identifiers.org/registry/facebase", + "@id": "http://www.wikidata.org/entity/P8691", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/bacmap.biog", + "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/caps", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.", + "http://purl.org/dc/terms/description": "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BacMap Biography" + "@value": "CAPS-DB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS" }, { - "@id": "https://registry.identifiers.org/registry/bacmap.biog" + "@id": "https://registry.identifiers.org/registry/caps" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bacmap.wishartlab.com/" + "@id": "http://www.bioinsilico.org/cgi-bin/CAPSDB/staticHTML/home" }, - "https://bioregistry.io/schema/#0000005": "1050", - "https://bioregistry.io/schema/#0000006": "http://bacmap.wishartlab.com/organisms/$1", + "https://bioregistry.io/schema/#0000005": "434", + "https://bioregistry.io/schema/#0000006": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bacmap.wishartlab.com/organisms/", + "https://bioregistry.io/schema/#0000024": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bacmap.wishartlab.com/organisms/1050" + "@id": "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=434" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bacmap.biog" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y2qkst", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "caps" } }, { - "@id": "https://registry.identifiers.org/registry/nextprot", + "@id": "http://aber-owl.net/ontology/SUGARBIND", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.bio2kg.org/resource/ccds", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.b5cc91", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0002-9673-1283", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yuki Yamagata" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "yuki.yamagata@riken.jp" } }, { - "@id": "https://registry.identifiers.org/registry/knapsack", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/ymdb", + "@id": "https://bioregistry.io/registry/ccds", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).", + "http://purl.org/dc/terms/description": "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Metabolome Database" + "@value": "Consensus CDS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.tawpg2" + "@id": "https://registry.bio2kg.org/resource/ccds" + }, + { + "@id": "https://registry.identifiers.org/registry/ccds" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CCDS" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.46s4nt" }, { - "@id": "https://www.re3data.org/repository/r3d100012733" + "@id": "https://www.uniprot.org/database/DB-0187" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "metabolomics" + "@value": "protein" }, { "@value": "life science" + }, + { + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ymdb.ca" + "@id": "http://www.ncbi.nlm.nih.gov/CCDS/" }, - "https://bioregistry.io/schema/#0000005": "YMDB00001", - "https://bioregistry.io/schema/#0000006": "http://www.ymdb.ca/compounds/$1", - "https://bioregistry.io/schema/#0000008": "^YMDB\\d+$", + "https://bioregistry.io/schema/#0000005": "CCDS13573.1", + "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1", + "https://bioregistry.io/schema/#0000008": "^CCDS\\d+\\.\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ymdb.ca/compounds/", + "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ymdb.ca/compounds/YMDB00001" + "@id": "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=CCDS13573.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ymdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fypo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0002-1810-9886", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Blackburn" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "david.c.blackburn@gmail.com" + "@value": "ccds" } }, { - "@id": "https://bioregistry.io/registry/github", + "@id": "https://bioregistry.io/registry/smiles", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GitHub is an online host of Git source code repositories.", + "http://purl.org/dc/terms/description": "Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://services.github.com/" + "@id": "https://github.com/timvdm/OpenSMILES/blob/master/discussion_summary.txt" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "github" + "@value": "Simplified molecular-input line-entry system" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/github" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010375" + "@id": "http://www.wikidata.org/entity/P233" }, { - "@id": "https://fairsharing.org/FAIRsharing.c55d5e" + "@id": "https://fairsharing.org/FAIRsharing.qv4b3c" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" - }, - { - "@value": "software engineering" + "@value": "life science" }, { - "@value": "knowledge and information systems" + "@value": "chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/" + "@id": "https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html" }, - "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry", - "https://bioregistry.io/schema/#0000006": "https://github.com/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$", + "https://bioregistry.io/schema/#0000005": "CC2(C)C\\1CCC(C)/C=C/12", + "https://bioregistry.io/schema/#0000006": "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://github.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://github.com/biopragmatics/bioregistry" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nf9f7c3b2293d498c9c5b447a07a5fe53" }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/smiles:", "https://bioregistry.io/schema/#0000029": { - "@value": "github" + "@value": "smiles" } }, { - "@id": "https://bioregistry.io/registry/ddpheno", + "@id": "_:Nf9f7c3b2293d498c9c5b447a07a5fe53", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tim Vandermeersch" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "tim.vandermeersch@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/emdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.", + "http://purl.org/dc/terms/description": "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/dicty-phenotype-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dictyostelium discoideum phenotype ontology" + "@value": "Electron Microscopy Data Bank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/DDPHENO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9c1p18" + "@id": "http://edamontology.org/data_1146" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno" + "@id": "https://fairsharing.org/FAIRsharing.651n9j" }, { - "@id": "http://www.ontobee.org/ontology/DDPHENO" + "@id": "https://www.re3data.org/repository/r3d100010562" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO" + "@id": "https://registry.identifiers.org/registry/emdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb" }, { - "@id": "https://www.obofoundry.org/ontology/ddpheno" + "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "virology" }, { - "@value": "ontology" + "@value": "structural biology" }, { - "@value": "life science" + "@value": "epidemiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://dictybase.org/" - }, - "https://bioregistry.io/schema/#0000005": "0001417", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DDPHENO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ddpheno.owl" + "@id": "https://www.ebi.ac.uk/pdbe/emdb/" }, + "https://bioregistry.io/schema/#0000005": "EMD-1001", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbe/entry/emdb/$1", + "https://bioregistry.io/schema/#0000008": "^EMD-\\d{4,5}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4532-2703" + "@id": "https://orcid.org/0000-0001-7663-9028" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbe/entry/emdb/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DDPHENO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/DDPHENO_0001417" + "@id": "https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ddpheno" + "@value": "emdb" } }, { - "@id": "https://registry.bio2kg.org/resource/ma", + "@id": "https://registry.identifiers.org/registry/gramene.qtl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.fc3431", + "@id": "https://bioregistry.io/registry/skip", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stemcell Knowledge and Information Portal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://skip.stemcellinformatics.org/en/" + }, + "https://bioregistry.io/schema/#0000005": "SKIP001214", + "https://bioregistry.io/schema/#0000006": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1", + "https://bioregistry.io/schema/#0000008": "^SKIP\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=SKIP001214" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "skip" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333", + "@id": "https://registry.identifiers.org/registry/treebase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/norine", + "@id": "https://www.uniprot.org/database/DB-0226", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.identifiers.org/registry/imgt.ligm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/ndfrt", + "@id": "https://registry.identifiers.org/registry/bto", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P353", + "@id": "https://fairsharing.org/FAIRsharing.5f5mfm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/protonet.cluster", + "@id": "https://registry.identifiers.org/registry/isbn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/to", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/rtecs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information.", + "http://purl.org/dc/terms/description": "RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ProtoNet Cluster" + "@value": "Registry of Toxic Effects of Chemical Substances" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://semanticscience.org/resource/CHEMINF_000566" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTONET.CLUSTER" - }, - { - "@id": "https://registry.identifiers.org/registry/protonet.cluster" - }, - { - "@id": "https://registry.bio2kg.org/resource/protonet.cluster" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "clustering" - }, - { - "@value": "classification" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.protonet.cs.huji.ac.il/" + "@id": "https://www.cdc.gov/niosh/rtecs/" }, - "https://bioregistry.io/schema/#0000005": "4349895", - "https://bioregistry.io/schema/#0000006": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "AB1925000", + "https://bioregistry.io/schema/#0000008": "^AB\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=4349895" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "protonet.cluster" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "rtecs" } }, { - "@id": "https://bioregistry.io/registry/jcm", + "@id": "https://bioregistry.io/registry/emap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Japan Collection of Microorganisms" + "@value": "Mouse gross anatomy and development, timed" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.h2wrt2" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm" + "@id": "https://registry.bio2kg.org/resource/emap.ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCM" + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP" }, { - "@id": "https://registry.bio2kg.org/resource/jcm" + "@id": "https://www.obofoundry.org/ontology/emap" }, { - "@id": "https://registry.identifiers.org/registry/jcm" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM" + "@id": "https://bioportal.bioontology.org/ontologies/EMAP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "mouse" }, { - "@value": "taxonomy" + "@value": "ontology" }, { - "@value": "microbial" + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "development" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.jcm.riken.go.jp/" + "@id": "http://emouseatlas.org" }, - "https://bioregistry.io/schema/#0000005": "17254", - "https://bioregistry.io/schema/#0000006": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EMAP_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=17254" + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/emap.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0956-8634" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EMAP_", "https://bioregistry.io/schema/#0000029": { - "@value": "jcm" + "@value": "emap" } }, { - "@id": "https://bioregistry.io/registry/giardiadb", + "@id": "http://www.ontobee.org/ontology/SDGIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://www.ontobee.org/ontology/EPSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/hba", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the human brain", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GiardiaDB" + "@value": "Human Brain Atlas" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.e7skwg" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012458" - }, - { - "@id": "https://registry.identifiers.org/registry/giardiadb" - }, - { - "@id": "https://registry.bio2kg.org/resource/giardiadb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" - }, - { - "@value": "eukaryotic" - }, - { - "@value": "genomics" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://giardiadb.org/giardiadb/" + "@id": "https://human.brain-map.org" + }, + "https://bioregistry.io/schema/#0000005": "4005", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/hba/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-hba.obo" }, - "https://bioregistry.io/schema/#0000005": "GL50803_102438", - "https://bioregistry.io/schema/#0000006": "https://giardiadb.org/giardiadb/app/record/gene/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://giardiadb.org/giardiadb/app/record/gene/", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/hba/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://giardiadb.org/giardiadb/app/record/gene/GL50803_102438" + "@id": "https://biopragmatics.github.io/providers/hba/4005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "giardiadb" + "@value": "hba" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB", + "@id": "http://aber-owl.net/ontology/OOSTT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/opmi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://orcid.org/0000-0003-4727-9435", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michel Dumontier" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "michel.dumontier@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease", + "@id": "https://registry.identifiers.org/registry/ensembl.protist", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/wikidata.property", + "@id": "https://bioregistry.io/registry/enzo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. ", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/wikidata" - } - ], + "http://purl.org/dc/terms/description": "Enzo Life Sciences is an antibody vendor.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wikidata Property" + "@value": "Enzo Life Sciences" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop" + "@value": "vendor" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY" + "@value": "antibodies" + }, + { + "@value": "life sciences" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.wikidata.org" + "@id": "https://www.enzolifesciences.com" }, - "https://bioregistry.io/schema/#0000005": "P4355", - "https://bioregistry.io/schema/#0000006": "https://www.wikidata.org/wiki/Property:$1", - "https://bioregistry.io/schema/#0000008": "^P\\d+$", + "https://bioregistry.io/schema/#0000005": "ALX-210-175", + "https://bioregistry.io/schema/#0000006": "https://www.enzolifesciences.com/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.wikidata.org/wiki/Property:", + "https://bioregistry.io/schema/#0000023": { + "@value": "Enzo Life Sciences" + }, + "https://bioregistry.io/schema/#0000024": "https://www.enzolifesciences.com/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.wikidata.org/wiki/Property:P4355" + "@id": "https://www.enzolifesciences.com/ALX-210-175" }, "https://bioregistry.io/schema/#0000029": { - "@value": "wikidata.property" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/microsporidia", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "enzo" } }, { - "@id": "https://bioregistry.io/registry/ecg", + "@id": "https://bioregistry.io/registry/mop", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.", + "http://purl.org/dc/terms/description": "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rsc-ontologies/rxno" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Electrocardiogram Ontology" + "@value": "Molecular Process Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.azr389" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop" }, { - "@id": "http://aber-owl.net/ontology/ECG" + "@id": "https://bioportal.bioontology.org/ontologies/MOP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECG" + "@id": "http://aber-owl.net/ontology/MOP" + }, + { + "@id": "https://www.obofoundry.org/ontology/mop" + }, + { + "@id": "http://www.ontobee.org/ontology/MOP" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MOP" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mct09a" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -104652,19296 +101243,11427 @@ "@value": "ontology" }, { - "@value": "biomedical science" + "@value": "molecular chemistry" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/ECG" + "@id": "https://github.com/rsc-ontologies/rxno" }, - "https://bioregistry.io/schema/#0000005": "000000159", - "https://bioregistry.io/schema/#0000006": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0000079", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MOP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ECG/12/ecg.owl" + "@id": "http://purl.obolibrary.org/obo/mop.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1719-1651" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ECGOntology" + "@id": "https://orcid.org/0000-0001-5985-7429" }, - "https://bioregistry.io/schema/#0000024": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MOP_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_000000159" + "@id": "http://purl.obolibrary.org/obo/MOP_0000079" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecg" + "@value": "mop" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P6245", + "@id": "https://www.re3data.org/repository/r3d100010774", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://edamontology.org/data_1187", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNEST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pfam.clan", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/lter", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Higher order grouping of Pfam families", + "http://purl.org/dc/terms/description": "Ecological terms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pfam Clans" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://edamontology.org/data_2758" + "@value": "Long Term Ecological Research Controlled Vocabulary" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pfam.xfam.org" + "@id": "https://vocab.lternet.edu/vocab/vocab/index.php" }, - "https://bioregistry.io/schema/#0000005": "CL0192", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/set/pfam/$1", - "https://bioregistry.io/schema/#0000008": "^CL\\d+$", + "https://bioregistry.io/schema/#0000005": "182", + "https://bioregistry.io/schema/#0000006": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/set/pfam/", + "https://bioregistry.io/schema/#0000024": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/interpro/set/pfam/CL0192" + "@id": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=182" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pfam.clan" + "@value": "lter" } }, { - "@id": "https://registry.bio2kg.org/resource/door", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_365", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011046", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/olatdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b34b43", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/fbbt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/col", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier of a taxon or synonym in the Catalogue of Life", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Catalogue of Life" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bartoc.org/en/node/1915" - }, - { - "@id": "https://registry.identifiers.org/registry/col" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.checklistbank.org" - }, - "https://bioregistry.io/schema/#0000005": "4QHKG", - "https://bioregistry.io/schema/#0000006": "https://www.checklistbank.org/dataset/3LR/taxon/$1", - "https://bioregistry.io/schema/#0000008": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.checklistbank.org/dataset/3LR/taxon/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.checklistbank.org/dataset/3LR/taxon/4QHKG" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "col" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/snomedct", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.", + "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SNOMED CT (International Edition)" + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.af5655", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Fungorum", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w69t6r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FOODB.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hmgte8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ols", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346" }, { - "@id": "https://registry.bio2kg.org/resource/snomedct" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls" }, { - "@id": "http://www.wikidata.org/entity/P5806" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi" }, { - "@id": "http://aber-owl.net/ontology/SNOMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo" }, { - "@id": "https://fairsharing.org/FAIRsharing.d88s6e" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso" }, { - "@id": "https://registry.identifiers.org/registry/snomedct" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma" + }, { - "@value": "biomedical science" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto" }, { - "@value": "health science" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366" }, { - "@value": "medicine" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms" }, { - "@value": "preclinical studies" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.snomedbrowser.com/" - }, - "https://bioregistry.io/schema/#0000005": "284196006", - "https://bioregistry.io/schema/#0000006": "http://snomed.info/id/$1", - "https://bioregistry.io/schema/#0000008": "^(\\w+)?\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://snomed.info/sct/900000000000207008/version/20200131" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8ac8ba2b4326434e857290d3799d8f7a" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo" + }, { - "@value": "SNOMEDCTCT_2018_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo" }, { - "@value": "SNOMEDCT_US_2018_09_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap" }, { - "@value": "SNOMEDCT_US_2020_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl" }, { - "@value": "SNOMEDCT_US_2020_09_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vto" }, { - "@value": "SCTID_2010_1_31" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo" }, { - "@value": "SNOMEDCT_2010_1_31" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon" }, { - "@value": "SNOMEDCT_US_2015_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron" }, { - "@value": "SNOMEDCT_US_2023_02_28" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327" }, { - "@value": "SNOMEDCT_US_2016_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio" }, { - "@value": "SNOMED" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom" }, { - "@value": "SNOMED_CT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322" }, { - "@value": "SNOMEDCT_US_2018_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno" }, { - "@value": "SNOMEDCT_US_2022_12_31" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo" }, { - "@value": "SNOMEDCT_2005_07_31" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico" }, { - "@value": "SNOMEDCT_US_2022_09_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2" }, { - "@value": "SNOMEDCT_US_2019_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila" }, { - "@value": "SNOMEDCT_2020_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco" }, { - "@value": "SNOMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro" }, { - "@value": "SNOMEDCTCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo" }, { - "@value": "SNOMEDCT_US_2022_07_31" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs" }, { - "@value": "SNOMEDCT_US" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero" }, { - "@value": "SNOMED_CT_US_2018_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao" }, { - "@value": "SNOMEDCT_US_2021_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334" }, { - "@value": "SNOWMEDCT_US" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo" }, { - "@value": "SNOWMEDCT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana" }, { - "@value": "SNOMEDCTCT_2019_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod" }, { - "@value": "SNOMEDCT_US_2021_09_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi" }, { - "@value": "SNOWMEDCT_US_2018_03_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons" }, { - "@value": "SNOMECT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh" }, { - "@value": "SCTID" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco" }, { - "@value": "SNOMEDCT_US_2019_09_01" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo" }, { - "@value": "SNOMEDCT_US_2021_07_31" - } - ], - "https://bioregistry.io/schema/#0000024": "http://snomed.info/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://snomed.info/id/284196006" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "snomedct" - } - }, - { - "@id": "_:N8ac8ba2b4326434e857290d3799d8f7a", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NLM Customer Service" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "custserv@nlm.nih.gov" - } - }, - { - "@id": "https://bioregistry.io/registry/erv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Endogenous Retrovirus Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro" + }, { - "@id": "https://registry.identifiers.org/registry/erv" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERV" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://herv.img.cas.cz/" - }, - "https://bioregistry.io/schema/#0000005": "THE1B", - "https://bioregistry.io/schema/#0000006": "https://herv.img.cas.cz/s/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\-\\_]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://herv.img.cas.cz/s/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://herv.img.cas.cz/s/THE1B" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "erv" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/YPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/TTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://orcid.org/0000-0002-9713-9994", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mike Tyers" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "md.tyers@umontreal.ca" - } - }, - { - "@id": "https://orcid.org/0000-0002-9746-371", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mark Gerstein" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mark@gersteinlab.org" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0177", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "http://aber-owl.net/ontology/MICRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0001-7251-9504", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Henriette Harmse" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "henriette007@ebi.ac.uk" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/bionumbers", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioNumbers" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/po" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357" + }, { - "@id": "http://edamontology.org/data_2660" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino" }, { - "@id": "https://registry.bio2kg.org/resource/bionumbers" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo" }, { - "@id": "https://registry.identifiers.org/registry/bionumbers" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bionumbers.hms.harvard.edu" - }, - "https://bioregistry.io/schema/#0000005": "104674", - "https://bioregistry.io/schema/#0000006": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=104674" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bionumbers" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000408", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://registry.identifiers.org/registry/chickenqtldb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dg1f0e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/virushostdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z1czxj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/miro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Application ontology for entities related to insecticide resistance in mosquitos", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VEuPathDB-ontology/MIRO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mosquito insecticide resistance" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm" }, { - "@id": "http://aber-owl.net/ontology/MIRO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis" }, { - "@id": "http://www.ontobee.org/ontology/MIRO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto" }, { - "@id": "https://fairsharing.org/FAIRsharing.sjf113" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype" }, { - "@id": "https://www.obofoundry.org/ontology/miro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http" + }, { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo" }, { - "@value": "ontology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/VEuPathDB-ontology/MIRO" - }, - "https://bioregistry.io/schema/#0000005": "40000617", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/miro.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2497-2210" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIRO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "miro" - } - }, - { - "@id": "https://bioregistry.io/registry/fideo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Food-Drug interactions automatically extracted from scientific literature", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://gitub.u-bordeaux.fr/erias/fideo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Food Interactions with Drugs Evidence Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa" + }, { - "@id": "https://www.obofoundry.org/ontology/fideo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FIDEO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro" }, { - "@id": "http://www.ontobee.org/ontology/FIDEO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon" }, { - "@id": "http://aber-owl.net/ontology/FIDEO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo" + }, { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gitub.u-bordeaux.fr/erias/fideo" - }, - "https://bioregistry.io/schema/#0000005": "00000021", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FIDEO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fideo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9921-8234" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FIDEO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FIDEO_00000021" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fideo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gateway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/civic.eid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo" + }, { - "@id": "https://bioregistry.io/registry/civic" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Evidence" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.eid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "1199", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/evidence/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/evidence/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/evidence/1199" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "civic.eid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000304", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NBRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jwra3e", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/easychair.topic", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Call for paper topics in EasyChair", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EasyChair Topic" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo" + }, { - "@value": "metascience" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs" }, { - "@value": "topics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://easychair.org/cfp/" - }, - "https://bioregistry.io/schema/#0000005": "27106865", - "https://bioregistry.io/schema/#0000006": "https://easychair.org/cfp/topic.cgi?tid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://easychair.org/cfp/topic.cgi?tid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://easychair.org/cfp/topic.cgi?tid=27106865" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "easychair.topic" - } - }, - { - "@id": "https://bioregistry.io/registry/mirte", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "miRNA Target Prediction at EMBL" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.russelllab.org/miRNAs/" - }, - "https://bioregistry.io/schema/#0000005": "miR-1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirte" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/abs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0013", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vgnc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/scr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SciCrunch Registry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno" + }, { - "@id": "https://fairsharing.org/FAIRsharing.kj4pvk" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto" + }, { - "@value": "life science" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr" }, { - "@value": "interactive portal" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325" }, { - "@value": "neurobiology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335" }, { - "@value": "nih initiative" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao" }, { - "@value": "rrid" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scicrunch.org/browse/resourcedashboard" - }, - "https://bioregistry.io/schema/#0000005": "022586", - "https://bioregistry.io/schema/#0000006": "http://scicrunch.org/resolver/SCR_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "scicrunch" - }, - "https://bioregistry.io/schema/#0000024": "http://scicrunch.org/resolver/SCR_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://scicrunch.org/resolver/SCR_022586" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/uniprot", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333" + }, { - "@id": "https://www.uniprot.org/database/DB-0044" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv" }, { - "@id": "https://www.uniprot.org/database/DB-0023" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo" }, { - "@id": "https://www.uniprot.org/database/DB-0253" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao" }, { - "@id": "https://www.uniprot.org/database/DB-0254" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo" }, { - "@id": "https://www.uniprot.org/database/DB-0069" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib" }, { - "@id": "https://www.uniprot.org/database/DB-0139" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao" }, { - "@id": "https://www.uniprot.org/database/DB-0187" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy" }, { - "@id": "https://www.uniprot.org/database/DB-0221" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco" }, { - "@id": "https://www.uniprot.org/database/DB-0185" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore" }, { - "@id": "https://www.uniprot.org/database/DB-0072" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro" }, { - "@id": "https://www.uniprot.org/database/DB-0042" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao" }, { - "@id": "https://www.uniprot.org/database/DB-0162" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324" }, { - "@id": "https://www.uniprot.org/database/DB-0256" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp" }, { - "@id": "https://www.uniprot.org/database/DB-0015" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl" }, { - "@id": "https://www.uniprot.org/database/DB-0172" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo" }, { - "@id": "https://www.uniprot.org/database/DB-0022" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit" }, { - "@id": "https://www.uniprot.org/database/DB-0074" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio" }, { - "@id": "https://www.uniprot.org/database/DB-0183" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido" }, { - "@id": "https://www.uniprot.org/database/DB-0092" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco" }, { - "@id": "https://www.uniprot.org/database/DB-0062" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom" }, { - "@id": "https://www.uniprot.org/database/DB-0214" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd" }, { - "@id": "https://www.uniprot.org/database/DB-0005" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv" }, { - "@id": "https://www.uniprot.org/database/DB-0016" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco" }, { - "@id": "https://www.uniprot.org/database/DB-0190" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo" }, { - "@id": "https://www.uniprot.org/database/DB-0027" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon" }, { - "@id": "https://www.uniprot.org/database/DB-0052" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo" }, { - "@id": "https://www.uniprot.org/database/DB-0241" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp" }, { - "@id": "https://www.uniprot.org/database/DB-0119" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf" }, { - "@id": "https://www.uniprot.org/database/DB-0097" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads" }, { - "@id": "https://www.uniprot.org/database/DB-0181" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc" }, { - "@id": "https://www.uniprot.org/database/DB-0141" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero" }, { - "@id": "https://www.uniprot.org/database/DB-0236" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc" }, { - "@id": "https://www.uniprot.org/database/DB-0174" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro" }, { - "@id": "https://www.uniprot.org/database/DB-0017" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345" }, { - "@id": "https://www.uniprot.org/database/DB-0084" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360" }, { - "@id": "https://www.uniprot.org/database/DB-0028" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo" }, { - "@id": "https://www.uniprot.org/database/DB-0127" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv" }, { - "@id": "https://www.uniprot.org/database/DB-0130" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp" }, { - "@id": "https://www.uniprot.org/database/DB-0126" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao" }, { - "@id": "https://www.uniprot.org/database/DB-0197" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo" }, { - "@id": "https://www.uniprot.org/database/DB-0038" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo" }, { - "@id": "https://www.uniprot.org/database/DB-0031" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19" }, { - "@id": "https://www.uniprot.org/database/DB-0024" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo" }, { - "@id": "https://www.uniprot.org/database/DB-0013" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol" }, { - "@id": "https://www.uniprot.org/database/DB-0060" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326" }, { - "@id": "https://www.uniprot.org/database/DB-0206" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma" }, { - "@id": "https://www.uniprot.org/database/DB-0113" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto" }, { - "@id": "https://www.uniprot.org/database/DB-0144" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath" }, { - "@id": "https://www.uniprot.org/database/DB-0205" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf" }, { - "@id": "https://www.uniprot.org/database/DB-0155" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365" }, { - "@id": "https://www.uniprot.org/database/DB-0135" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo" }, { - "@id": "https://www.uniprot.org/database/DB-0145" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331" }, { - "@id": "https://www.uniprot.org/database/DB-0037" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal" }, { - "@id": "https://www.uniprot.org/database/DB-0258" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms" }, { - "@id": "https://www.uniprot.org/database/DB-0224" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq" }, { - "@id": "https://www.uniprot.org/database/DB-0110" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358" }, { - "@id": "https://www.uniprot.org/database/DB-0182" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco" }, { - "@id": "https://www.uniprot.org/database/DB-0046" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi" }, { - "@id": "https://www.uniprot.org/database/DB-0148" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride" }, { - "@id": "https://www.uniprot.org/database/DB-0147" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro" }, { - "@id": "https://www.uniprot.org/database/DB-0239" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm" }, { - "@id": "https://www.uniprot.org/database/DB-0073" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw" }, { - "@id": "https://www.uniprot.org/database/DB-0118" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl" }, { - "@id": "https://www.uniprot.org/database/DB-0091" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso" }, { - "@id": "https://www.uniprot.org/database/DB-0079" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado" }, { - "@id": "https://www.uniprot.org/database/DB-0026" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp" }, { - "@id": "https://www.uniprot.org/database/DB-0228" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp" }, { - "@id": "https://www.uniprot.org/database/DB-0152" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338" }, { - "@id": "https://www.uniprot.org/database/DB-0058" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd" }, { - "@id": "https://www.uniprot.org/database/DB-0158" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo" }, { - "@id": "https://www.uniprot.org/database/DB-0049" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio" }, { - "@id": "https://www.uniprot.org/database/DB-0117" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido" }, { - "@id": "https://www.uniprot.org/database/DB-0149" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno" }, { - "@id": "https://www.uniprot.org/database/DB-0068" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi" }, { - "@id": "https://www.uniprot.org/database/DB-0184" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao" }, { - "@id": "https://www.uniprot.org/database/DB-0129" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno" }, { - "@id": "https://www.uniprot.org/database/DB-0143" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso" }, { - "@id": "https://www.uniprot.org/database/DB-0071" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath" }, { - "@id": "https://www.uniprot.org/database/DB-0156" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341" }, { - "@id": "https://www.uniprot.org/database/DB-0266" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf" }, { - "@id": "https://www.uniprot.org/database/DB-0180" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth" }, { - "@id": "https://www.uniprot.org/database/DB-0136" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl" }, { - "@id": "https://www.uniprot.org/database/DB-0177" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao" }, { - "@id": "https://www.uniprot.org/database/DB-0106" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs" }, { - "@id": "https://www.uniprot.org/database/DB-0095" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv" }, { - "@id": "https://www.uniprot.org/database/DB-0030" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma" }, { - "@id": "https://www.uniprot.org/database/DB-0053" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336" }, { - "@id": "https://www.uniprot.org/database/DB-0121" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi" }, { - "@id": "https://www.uniprot.org/database/DB-0019" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem" }, { - "@id": "https://www.uniprot.org/database/DB-0089" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph" }, { - "@id": "https://www.uniprot.org/database/DB-0160" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330" }, { - "@id": "https://www.uniprot.org/database/DB-0082" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/one" }, { - "@id": "https://www.uniprot.org/database/DB-0140" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio" }, { - "@id": "https://www.uniprot.org/database/DB-0020" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa" }, { - "@id": "https://www.uniprot.org/database/DB-0041" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto" }, { - "@id": "https://www.uniprot.org/database/DB-0051" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme" }, { - "@id": "https://www.uniprot.org/database/DB-0223" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro" }, { - "@id": "https://www.uniprot.org/database/DB-0251" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco" }, { - "@id": "https://www.uniprot.org/database/DB-0226" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno" }, { - "@id": "https://www.uniprot.org/database/DB-0161" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Cross-ref database" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.uniprot.org/database/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "DB-0174" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://www.uniprot.org/database/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6982-4660" - } - }, - { - "@id": "http://aber-owl.net/ontology/FBbi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/biosample", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioSample" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo" + }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BioSamples" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/so" }, { - "@id": "https://registry.identifiers.org/registry/biosample" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSAMPLE" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi" }, { - "@id": "https://fairsharing.org/FAIRsharing.qr6pqk" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit" }, { - "@id": "https://www.re3data.org/repository/r3d100012828" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340" + }, { - "@value": "dna" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno" }, { - "@value": "stem cell" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo" }, { - "@value": "cell" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco" }, { - "@value": "biomaterial" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv" }, { - "@value": "cell line" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347" }, { - "@value": "biology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt" }, { - "@value": "gold standard" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno" }, { - "@value": "rna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/biosamples/" - }, - "https://bioregistry.io/schema/#0000005": "SAMEA2397676", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biosamples/sample/$1", - "https://bioregistry.io/schema/#0000008": "^SAM[NED](\\w)?\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "biosamples" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biosamples/sample/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/biosamples/sample/SAMEA2397676" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biosample" - } - }, - { - "@id": "https://bioregistry.io/registry/dmba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the developing mouse brain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Developing Mouse Brain Atlas" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://developingmouse.brain-map.org/" - }, - "https://bioregistry.io/schema/#0000005": "15567", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/dmba/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dmba.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/dmba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/dmba/15567" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dmba" - } - }, - { - "@id": "https://registry.identifiers.org/registry/idot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010798", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/matrixdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MatrixDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem" + }, { - "@id": "https://www.re3data.org/repository/r3d100010672" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo" }, { - "@id": "https://registry.bio2kg.org/resource/matrixdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse" }, { - "@id": "https://fairsharing.org/FAIRsharing.91yrz6" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo" + }, { - "@value": "biology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism" }, { - "@value": "protein" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat" }, { - "@value": "interaction" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo" }, { - "@value": "small molecule" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://matrixdb.univ-lyon1.fr/" - }, - "https://bioregistry.io/schema/#0000005": "MULT_4_VAR1_bovine", - "https://bioregistry.io/schema/#0000006": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/complexportal" - }, - "https://bioregistry.io/schema/#0000024": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=MULT_4_VAR1_bovine" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "matrixdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dbprobe", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/glida.ligand", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012820", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_346", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/geogeo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\".", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ufbmi/geographical-entity-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Geographical Entity Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto" }, { - "@id": "https://fairsharing.org/FAIRsharing.27rndz" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GEO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp" }, { - "@id": "http://www.ontobee.org/ontology/GEO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337" }, { - "@id": "https://registry.identifiers.org/registry/geogeo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov" }, { - "@id": "https://www.obofoundry.org/ontology/geo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/om" + }, { - "@value": "human geography" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa" }, { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs" }, { - "@value": "ontology" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo" }, { - "@value": "physical geography" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ufbmi/geographical-entity-ontology/wiki" - }, - "https://bioregistry.io/schema/#0000005": "000000021", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GEO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{9}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/geo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9881-1017" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GEO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GEO_000000021" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "geogeo" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010137", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/rgd.qtl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Genome Database qTL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343" }, { - "@id": "https://registry.identifiers.org/registry/rgd.qtl" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/" - }, - "https://bioregistry.io/schema/#0000005": "1354581", - "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=1354581" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rgd.qtl" - } - }, - { - "@id": "https://bioregistry.io/registry/omo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/information-artifact-ontology/ontology-metadata" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OBO Metadata Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350" + }, { - "@id": "https://www.obofoundry.org/ontology/omo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod" }, { - "@id": "http://aber-owl.net/ontology/OMO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido" }, { - "@id": "http://www.ontobee.org/ontology/OMO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam" + }, { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/information-artifact-ontology/ontology-metadata" - }, - "https://bioregistry.io/schema/#0000005": "0003003", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/omo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/pcl" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OMO_0003003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "omo" - } - }, - { - "@id": "https://bioregistry.io/registry/aism", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/insect-morphology/aism" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for the Anatomy of the Insect SkeletoMuscular system" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348" + }, { - "@id": "https://www.obofoundry.org/ontology/aism" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo" }, { - "@id": "http://aber-owl.net/ontology/AISM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc" }, { - "@id": "http://www.ontobee.org/ontology/AISM" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/to" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AISM" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao" + }, { - "@value": "obo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/insect-morphology/aism" - }, - "https://bioregistry.io/schema/#0000005": "0000027", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AISM_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/aism.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio" + }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321" }, { - "@id": "https://bioregistry.io/registry/bspo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo" }, { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo" }, { - "@id": "https://bioregistry.io/registry/uberon" - } - ], - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl" + }, { - "@id": "https://bioregistry.io/registry/lepao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary" }, { - "@id": "https://bioregistry.io/registry/colao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/go" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0851-6883" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology Lookup Service" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AISM_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/AISM_0000027" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://www.ebi.ac.uk/ols4" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aism" - } - }, - { - "@id": "https://registry.identifiers.org/registry/swiss-model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.z4agsr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/RBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "https://bioregistry.io/schema/#0000005": { + "@value": "chebi" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://www.ebi.ac.uk/ols4/ontologies/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7251-9504" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ayjdsm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/xlmod", + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.EC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/FRAPO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB", + "@id": "http://edamontology.org/data_1042", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/mixs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Minimal Information about any Sequence" + "@id": "https://bioregistry.io/metaregistry/n2t", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "http://aber-owl.net/ontology/MIXS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MIXS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant" }, { - "@id": "https://fairsharing.org/FAIRsharing.9aa0zp" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gensc.org/pages/standards/all-terms.html" - }, - "https://bioregistry.io/schema/#0000005": "0001056", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/mixs/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/MIXS/5/mixs.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8815-0078" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/mixs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/mixs/0001056" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mixs" - } - }, - { - "@id": "https://bioregistry.io/registry/iceberg", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki" + }, { - "@id": "https://bioregistry.io/registry/iceberg.cime" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna" }, { - "@id": "https://bioregistry.io/registry/iceberg.element" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway" }, { - "@id": "https://bioregistry.io/registry/iceberg.family" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/affy.probeset" }, { - "@id": "https://bioregistry.io/registry/iceberg.ime" - } - ] - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j0t0pe", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/matrixdb.association", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIPMOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ZFA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/imgthla", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/envo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_333", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.af7a2d", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://www.ontobee.org/ontology/CVDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/mpath", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PaulNSchofield/mpath" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse pathology ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcvet" + }, { - "@id": "http://www.ontobee.org/ontology/MPATH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MPATH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing" }, { - "@id": "http://aber-owl.net/ontology/MPATH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm" }, { - "@id": "https://www.obofoundry.org/ontology/mpath" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript" }, { - "@id": "https://fairsharing.org/FAIRsharing.3wbgm0" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antweb" }, { - "@id": "https://registry.bio2kg.org/resource/mpath" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/autdb" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase" }, { - "@value": "mouse" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv" }, { - "@value": "phenotype" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pathbase.net" - }, - "https://bioregistry.io/schema/#0000005": "728", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MPATH_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mpath.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5111-7263" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "MPATH" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MPATH_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MPATH_728" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mpath" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.sye5js", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.97805c", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/clyh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/clyh_ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clytia hemisphaerica Development and Anatomy Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid" + }, { - "@id": "http://aber-owl.net/ontology/CLYH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome" }, { - "@id": "http://www.ontobee.org/ontology/CLYH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb" }, { - "@id": "https://www.obofoundry.org/ontology/clyh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CLYH" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/EBISPOT/clyh_ontology" - }, - "https://bioregistry.io/schema/#0000005": "1000100", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLYH_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/clyh.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx" + }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie" }, { - "@id": "https://bioregistry.io/registry/iao" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7440-0467" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLYH_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CLYH_1000100" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clyh" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gnpis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ecyano.entity", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.reference" + }, { - "@id": "https://bioregistry.io/registry/ecyano" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "E-cyanobacterium entity" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metabolights" + }, { - "@id": "https://registry.identifiers.org/registry/ecyano.entity" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vectorbase" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.e-cyanobacterium.org/bcs/entity/" - }, - "https://bioregistry.io/schema/#0000005": "23", - "https://bioregistry.io/schema/#0000006": "https://www.e-cyanobacterium.org/bcs/entity/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.e-cyanobacterium.org/bcs/entity/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.e-cyanobacterium.org/bcs/entity/23" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecyano.entity" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DINTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mirbase.mature", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rvd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.qe8tz8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-2340-5356", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Troy Pells" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "troy_pells@yahoo.ca" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATTLEQTLDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FALDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/iev", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/fovt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "These are the terms that are improted for FOVT to describe vertebrate traits.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/futres/fovt" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FuTRES Ontology of Vertebrate Traits" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone" + }, { - "@id": "https://www.obofoundry.org/ontology/fovt" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FOVT" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po" }, { - "@id": "http://aber-owl.net/ontology/FOVT" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb" }, { - "@id": "http://www.ontobee.org/ontology/FOVT" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/futres/fovt" - }, - "https://bioregistry.io/schema/#0000005": "0000009", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOVT_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fovt.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family" + }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/px" }, { - "@id": "https://bioregistry.io/registry/bspo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies" }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc" }, { - "@id": "https://bioregistry.io/registry/oba" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.gene" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase" }, { - "@id": "https://bioregistry.io/registry/bco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec" }, { - "@id": "https://bioregistry.io/registry/ro" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2699-3066" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOVT_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/FOVT_0000009" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fovt" - } - }, - { - "@id": "https://bioregistry.io/registry/ebisc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Bank for induced pluripotent Stem Cells" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EBiSC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebisc.org" - }, - "https://bioregistry.io/schema/#0000005": "ESi007-A", - "https://bioregistry.io/schema/#0000006": "https://cells.ebisc.org/$1", - "https://bioregistry.io/schema/#0000008": "^E(S|D)i\\d+-\\w$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cells.ebisc.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cells.ebisc.org/ESi007-A" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ebisc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0003-4694-3883", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Paolo Romano" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "paolo.romano@hsanmartino.it" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/nextdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/labo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenLHS/LABO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "clinical LABoratory Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot" + }, { - "@id": "https://www.obofoundry.org/ontology/labo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.gene" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene" }, { - "@id": "http://www.ontobee.org/ontology/LABO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LABO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest" }, { - "@id": "http://aber-owl.net/ontology/LABO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenLHS/LABO" - }, - "https://bioregistry.io/schema/#0000005": "0000124", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LABO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/labo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot" + }, { - "@id": "https://bioregistry.io/registry/opmi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome" }, { - "@id": "https://bioregistry.io/registry/ogms" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot" }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw" }, { - "@id": "https://bioregistry.io/registry/obi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor" }, { - "@id": "https://bioregistry.io/registry/omiabis" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell" }, { - "@id": "https://bioregistry.io/registry/omrse" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3336-2476" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LABO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/LABO_0000124" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "labo" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.shm2f2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/plasmodb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PlasmoDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug" }, { - "@id": "https://registry.identifiers.org/registry/plasmodb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.tuber" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scop" }, { - "@id": "https://registry.bio2kg.org/resource/plasmodb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.collection" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps" }, { - "@id": "https://fairsharing.org/FAIRsharing.g4n8sw" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand" }, { - "@id": "https://www.re3data.org/repository/r3d100011569" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant" + }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma" }, { - "@value": "infectious disease medicine" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uo" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://plasmodb.org/plasmo/" - }, - "https://bioregistry.io/schema/#0000005": "PF11_0344", - "https://bioregistry.io/schema/#0000006": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ApiDB_PlasmoDB" - }, - "https://bioregistry.io/schema/#0000024": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=PF11_0344" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "plasmodb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/scop.sid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": " A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Structural Classification of Protein - Stable Domain Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://edamontology.org/data_1039" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scop.berkeley.edu" - }, - "https://bioregistry.io/schema/#0000005": "d4akea1", - "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5153-9079" - }, - "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://scop.berkeley.edu/sid=d4akea1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scop.sid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/pocketome", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pocketome" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zinc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/brenda" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/POCKETOME" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase" }, { - "@id": "https://fairsharing.org/FAIRsharing.tc6df8" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.sacch" }, { - "@id": "https://registry.identifiers.org/registry/pocketome" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pocketome.org/sfSearch.cgi?act=browseall" - }, - "https://bioregistry.io/schema/#0000005": "1433C_TOBAC_1_252", - "https://bioregistry.io/schema/#0000006": "http://www.pocketome.org/files/$1.html", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pocketome:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pocketome.org/files/1433C_TOBAC_1_252.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pocketome" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9j4wh2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011166", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NDDF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/idocovid19", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The COVID-19 Infectious Disease Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/goa" + }, { - "@id": "http://aber-owl.net/ontology/IDO-COVID-19" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule" }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" - }, - "https://bioregistry.io/schema/#0000005": "0001191", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COVIDO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1118-1738" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COVIDO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/COVIDO_0001191" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "idocovid19" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/EHDAA2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/REX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/lincs.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LINCS Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr" + }, { - "@id": "https://registry.identifiers.org/registry/lincs.protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbrc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://lincs.hms.harvard.edu/db/proteins/" - }, - "https://bioregistry.io/schema/#0000005": "200282", - "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/proteins/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/proteins/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://lincs.hms.harvard.edu/db/proteins/200282" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lincs.protein" - } - }, - { - "@id": "https://bioregistry.io/registry/iev", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Event (INOH pathway ontology)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IEV" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb" }, { - "@id": "https://www.obofoundry.org/ontology/iev" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd" }, { - "@id": "https://registry.bio2kg.org/resource/iev" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo" + }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode" }, { - "@value": "pathway" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.inoh.org" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=0000000" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iev" - } - }, - { - "@id": "https://bioregistry.io/registry/co_365", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "developed by ICARDA - Dec 2018", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fababean ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodb.compound" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_365" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdsc" }, { - "@id": "https://cropontology.org/ontology/CO_365" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_365/Fababean" - }, - "https://bioregistry.io/schema/#0000005": "0000205", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_365:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_365/Fababean/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N87ad6811330e431f950b1e30885e91e2" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_365:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_365:0000205" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_365" - } - }, - { - "@id": "_:N87ad6811330e431f950b1e30885e91e2", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ICARDA Ethiopia" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0082", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/registry/clinicaltrials", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinicalTrials.gov" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINICALTRIALS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam" }, { - "@id": "https://registry.bio2kg.org/resource/clinicaltrials" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath" }, { - "@id": "http://www.wikidata.org/entity/P3098" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction" }, { - "@id": "https://registry.identifiers.org/registry/clinicaltrials" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst" + }, { - "@value": "human" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa" }, { - "@value": "disease" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh" }, { - "@value": "drug" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://clinicaltrials.gov/" - }, - "https://bioregistry.io/schema/#0000005": "NCT00222573", - "https://bioregistry.io/schema/#0000006": "https://www.clinicaltrials.gov/study/$1", - "https://bioregistry.io/schema/#0000008": "^NCT\\d{8}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb" + }, { - "@value": "clinicaltrial" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.disease" }, { - "@value": "NCT" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound" }, { - "@value": "ctgov" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.clinicaltrials.gov/study/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.clinicaltrials.gov/study/NCT00222573" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clinicaltrials" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_359", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0020", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.91yrz6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-8457-6693", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bjoern Peters" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bpeters@lji.org" - } - }, - { - "@id": "https://bioregistry.io/registry/ontoavida", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://gitlab.com/fortunalab/ontoavida" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Avida digital evolution platform" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc" }, { - "@id": "https://www.obofoundry.org/ontology/ontoavida" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway" }, { - "@id": "http://www.ontobee.org/ontology/ONTOAVIDA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex" }, { - "@id": "http://aber-owl.net/ontology/ONTOAVIDA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gitlab.com/fortunalab/ontoavida" - }, - "https://bioregistry.io/schema/#0000005": "00000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONTOAVIDA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ontoavida.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam" + }, { - "@id": "https://bioregistry.io/registry/stato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna" }, { - "@id": "https://bioregistry.io/registry/gsso" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbgap" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb" }, { - "@id": "https://bioregistry.io/registry/fbcv" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome" }, { - "@id": "https://bioregistry.io/registry/ncit" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8374-1941" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONTOAVIDA_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ONTOAVIDA_00000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ontoavida" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/trnadbce", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CLYH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/CDNO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/NDFRT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/LPT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/AEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mop", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7g1bzj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/doqcs.pathway", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb" + }, { - "@id": "https://bioregistry.io/registry/doqcs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homologene" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Quantitative Cellular Signaling: Pathway" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject" + }, { - "@id": "https://registry.bio2kg.org/resource/doqcs.pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome" }, { - "@id": "https://registry.identifiers.org/registry/doqcs.pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "pathway" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://doqcs.ncbs.res.in/" - }, - "https://bioregistry.io/schema/#0000005": "131", - "https://bioregistry.io/schema/#0000006": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=131" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "doqcs.pathway" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TTD.DRUG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010142", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.31apg2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/cgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/meddra", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Medical Dictionary for Regulatory Activities Terminology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hcvdb" + }, { - "@id": "http://aber-owl.net/ontology/MEDDRA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto" }, { - "@id": "https://bartoc.org/en/node/1237" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.yeast" }, { - "@id": "https://registry.identifiers.org/registry/meddra" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.ad3137" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdpd" }, { - "@id": "http://www.wikidata.org/entity/P3201" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim" + }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/combine.specifications" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo" }, { - "@value": "medicine" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioportal.bioontology.org/ontologies/MEDDRA" - }, - "https://bioregistry.io/schema/#0000005": "10015919", - "https://bioregistry.io/schema/#0000006": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N2ccf485d4a424189ba97a59849c5d815" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protclustdb" + }, { - "@value": "MeDRA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene" }, { - "@value": "MEDRA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid" }, { - "@value": "MedDRA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe" }, { - "@value": "Medical Dictionary for Regulatory Activities" - } - ], - "https://bioregistry.io/schema/#0000024": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=10015919" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "meddra" - } - }, - { - "@id": "_:N2ccf485d4a424189ba97a59849c5d815", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MedDRA MSSO" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mssohelp@meddra.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012078", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fbsp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/aop.stressor", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/pdumdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TRANS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/metanetx.chemical", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MetaNetX chemical" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gcst" }, { - "@id": "https://registry.identifiers.org/registry/metanetx.chemical" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.CHEMICAL" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.metanetx.org/" - }, - "https://bioregistry.io/schema/#0000005": "MNXM1723", - "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/chem_info/$1", - "https://bioregistry.io/schema/#0000008": "^(MNXM\\d+|BIOMASS|WATER)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/chem_info/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.metanetx.org/chem_info/MNXM1723" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "metanetx.chemical" - } - }, - { - "@id": "https://bioregistry.io/registry/dc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.\n\n**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3)).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Dublin Core Elements (1.1)" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/DC" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.3nx7t" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/dc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission" }, { - "@id": "http://aber-owl.net/ontology/dcelements" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/conoserver" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.reaction" }, { - "@value": "subject agnostic" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/" - }, - "https://bioregistry.io/schema/#0000005": "contributor", - "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/elements/1.1/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_elements.rdf" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9052-2854" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol" + }, { - "@value": "dc11" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj" }, { - "@value": "dc.elements" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa" }, { - "@value": "dce" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/elements/1.1/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/dc/elements/1.1/contributor" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dc" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gramene.taxonomy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/clingene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The allele registry provides and maintains identifiers for genetic variants", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinGen Allele Registry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex" + }, { - "@value": "mutations" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein" }, { - "@value": "genetics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mex" }, { - "@value": "alleles" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://reg.clinicalgenome.org" - }, - "https://bioregistry.io/schema/#0000005": "CA981206459", - "https://bioregistry.io/schema/#0000006": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1", - "https://bioregistry.io/schema/#0000008": "^CA\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "CAID" - }, - "https://bioregistry.io/schema/#0000024": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=CA981206459" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clingene" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0062", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.identifiers.org/registry/yrcpdr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/cro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/data2health/contributor-role-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Contributor Role Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idoo" + }, { - "@id": "https://www.obofoundry.org/ontology/cro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc" }, { - "@id": "http://www.ontobee.org/ontology/CRO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite" }, { - "@id": "http://aber-owl.net/ontology/CRO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CRO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/meddra" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/data2health/contributor-role-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000038", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cro.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5059-4132" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CRO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CRO_0000038" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cro" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LPT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/BAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/gramene.po", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/jcsd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/pato", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/pato-ontology/pato" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Phenotype And Trait Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omit" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aphidbase.transcript" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.compound" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lei" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo" + }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound" }, { - "@id": "https://www.obofoundry.org/ontology/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh" }, { - "@id": "http://www.ontobee.org/ontology/PATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp" }, { - "@id": "https://fairsharing.org/FAIRsharing.ezwdhz" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb" }, { - "@id": "https://registry.bio2kg.org/resource/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dev.ga4ghdos" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map" }, { - "@id": "https://registry.identifiers.org/registry/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microsporidia" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.compound" }, { - "@id": "http://aber-owl.net/ontology/PATO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily" + }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd" }, { - "@value": "phenotype" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013" }, { - "@value": "quality" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.cell_line" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo" }, { - "@value": "biodiversity" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eggnog" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/pato-ontology/pato/" - }, - "https://bioregistry.io/schema/#0000005": "0001998", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PATO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pato.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao" + }, { - "@id": "https://bioregistry.io/registry/phipo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction" }, { - "@id": "https://bioregistry.io/registry/planp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdsc" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca" }, { - "@id": "https://bioregistry.io/registry/colao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fplx" }, { - "@id": "https://bioregistry.io/registry/zp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/caps" }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vipr" }, { - "@id": "https://bioregistry.io/registry/cdno" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus" }, { - "@id": "https://bioregistry.io/registry/aism" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pseudomonas" }, { - "@id": "https://bioregistry.io/registry/xpo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb" }, { - "@id": "https://bioregistry.io/registry/ms" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource" }, { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome" }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmdb" }, { - "@id": "https://bioregistry.io/registry/proco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.stressor" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd" }, { - "@id": "https://bioregistry.io/registry/ecto" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect" }, { - "@id": "https://bioregistry.io/registry/lepao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox" }, { - "@id": "https://bioregistry.io/registry/pcl" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2061-091X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PATO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PATO_0001998" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pato" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012626", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/maizegdb.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0023", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/CMF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0002-8951-466X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Christine Pourcel" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Christine.Pourcel@u-psud.fr" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.h5f091", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.genome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/VHOG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OCI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/discoverx", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DiscoverX cell line products" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.discoverx.com/products-applications/cell-lines" - }, - "https://bioregistry.io/schema/#0000005": "95-0166C6", - "https://bioregistry.io/schema/#0000006": "https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/discoverx:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.discoverx.com/searchproduct?searchtext=95-0166C6&searchmode=exact" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "discoverx" - } - }, - { - "@id": "http://www.wikidata.org/entity/P662", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.identifiers.org/registry/morpheus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/poro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology describing the anatomical structures and characteristics of Porifera (sponges)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/porifera-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Porifera Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/PORO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cco" }, { - "@id": "http://aber-owl.net/ontology/PORO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist" }, { - "@id": "https://www.obofoundry.org/ontology/poro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PORO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg" }, { - "@id": "https://fairsharing.org/FAIRsharing.93g1th" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms" }, { - "@id": "http://www.ontobee.org/ontology/PORO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb" + }, { - "@value": "phylogeny" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw" }, { - "@value": "taxonomy" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/porifera-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000550", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PORO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/poro.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd" + }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemdb" }, { - "@id": "https://bioregistry.io/registry/uberon" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9654-0073" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PORO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PORO_0000550" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "poro" - } - }, - { - "@id": "https://bioregistry.io/registry/viroligo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The VirOligo database (1) is part of an effort to provide methods suitable for assessing what viruses are present in samples. Such methods should faciliate studies of the spatial and temporal distribution of viruses and their diversity at any one time and place.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VirOligo" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/viroligo" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://viroligo.okstate.edu" - }, - "https://bioregistry.io/schema/#0000005": "BM0456", - "https://bioregistry.io/schema/#0000006": "http://viroligo.okstate.edu/main.php?vid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://viroligo.okstate.edu/main.php?vid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://viroligo.okstate.edu/main.php?vid=BM0456" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "viroligo" - } - }, - { - "@id": "http://aber-owl.net/ontology/MP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0003-4004-6479", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Christopher Baker" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bakerc@unb.ca" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.q09hck", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.r41qhx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.309v57", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/orth", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/qfo/OrthologyOntology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Orthology Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.disease" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr" }, { - "@id": "https://fairsharing.org/FAIRsharing.4877h0" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ORTH" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mzspec" }, { - "@id": "http://aber-owl.net/ontology/ORTH" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.study" + }, { - "@value": "comparative genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/qfo/OrthologyOntology" - }, - "https://bioregistry.io/schema/#0000005": "HomologyRelation", - "https://bioregistry.io/schema/#0000006": "http://purl.org/net/orth#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/qfo/OrthologyOntology/raw/master/orthOntology_RC_v2_A.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7558-2880" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/net/orth#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/net/orth#HomologyRelation" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "orth" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/macie", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/phosphosite.sitegroup", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhosphoSite Site Group" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref" + }, { - "@value": "biochemistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver" }, { - "@value": "grouping" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor" }, { - "@value": "post-translational modification" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.phosphosite.org" - }, - "https://bioregistry.io/schema/#0000005": "447860", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phosphosite.sitegroup" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/registry/eurofir", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Food Information Resource Network" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.eurofir.org" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "eurofir" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ardb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Antibiotic Resistance Genes Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform" }, { - "@id": "https://registry.identifiers.org/registry/ardb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ardb.cbcb.umd.edu/" - }, - "https://bioregistry.io/schema/#0000005": "CAE46076", - "https://bioregistry.io/schema/#0000006": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z_]{3}[0-9]{4,}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=CAE46076" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ardb" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/rgap", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/jcm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/empiar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/pdbsum", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PDBsum; at-a-glance overview of macromolecular structures" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/idot" + }, { - "@id": "https://fairsharing.org/FAIRsharing.7vjq5t" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase.mature" }, { - "@id": "https://www.uniprot.org/database/DB-0119" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet" }, { - "@id": "https://registry.bio2kg.org/resource/pdbsum" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oci" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer" }, { - "@value": "structural biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/pdbsum" - }, - "https://bioregistry.io/schema/#0000005": "1kfv", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pdbsum/$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/pdb" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5528-0087" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pdbsum/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/pdbsum/1kfv" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pdbsum" - } - }, - { - "@id": "http://aber-owl.net/ontology/OGG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/imotdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/nist", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIST Chemistry WebBook" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://webbook.nist.gov/chemistry/" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pthcmp" + }, { - "@value": "NIST Chemistry WebBook" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist" }, { - "@value": "NIST" - } - ], - "https://bioregistry.io/schema/#0000029": { - "@value": "nist" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010419", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/orthodb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OrthoDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept" + }, { - "@id": "https://registry.bio2kg.org/resource/orthodb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mipmod" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey" }, { - "@id": "https://fairsharing.org/FAIRsharing.x989d5" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn" }, { - "@id": "https://www.uniprot.org/database/DB-0143" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtiwiki" }, { - "@id": "https://registry.identifiers.org/registry/orthodb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein" + }, { - "@value": "eukaryotic" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein" }, { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.orthodb.org" - }, - "https://bioregistry.io/schema/#0000005": "Q9P0K8", - "https://bioregistry.io/schema/#0000006": "http://cegg.unige.ch/orthodb/results?searchtext=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cegg.unige.ch/orthodb/results?searchtext=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cegg.unige.ch/orthodb/results?searchtext=Q9P0K8" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "orthodb" - } - }, - { - "@id": "http://edamontology.org/data_2787", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/REXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/funcbase.mouse", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/doqcs", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rbk" + }, { - "@id": "https://bioregistry.io/registry/doqcs.model" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed" }, { - "@id": "https://bioregistry.io/registry/doqcs.pathway" - } - ] - }, - { - "@id": "https://registry.identifiers.org/registry/ctd.chemical", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/STATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0149", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/kisao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0001-6875-5360", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John Graybeal" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbrc" + }, { - "@value": "support@bioontology.org" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene" }, { - "@value": "jgraybeal@stanford.edu" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://orcid.org/0000-0001-7647-6097", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mingxun Wang" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/otl" + }, { - "@value": "miw023@ucsd.edu" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd" }, { - "@value": "mingxun.wang@cs.ucr.edu" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/emsl.project", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Environmental Molecular Sciences Laboratory Project" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.emsl.pnnl.gov/projects" - }, - "https://bioregistry.io/schema/#0000005": "60141", - "https://bioregistry.io/schema/#0000006": "https://www.emsl.pnnl.gov/project/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8683-0050" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.emsl.pnnl.gov/project/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.emsl.pnnl.gov/project/60141" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "emsl.project" - } - }, - { - "@id": "https://bioregistry.io/registry/ricegap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rice Genome Annotation Project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psipar" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association" }, { - "@id": "https://registry.identifiers.org/registry/ricegap" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rice.plantbiology.msu.edu/annotation_pseudo_current.shtml" - }, - "https://bioregistry.io/schema/#0000005": "LOC_Os02g13300", - "https://bioregistry.io/schema/#0000006": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1", - "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=LOC_Os02g13300" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ricegap" - } - }, - { - "@id": "https://orcid.org/0000-0002-8151-7479", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Raymond Lee" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "raymond@caltech.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/ppr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Europe PMC Preprints" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco" + }, { - "@value": "preprints" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge" }, { - "@value": "bibliometrics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway" }, { - "@value": "publishing" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://europepmc.org/Preprints" - }, - "https://bioregistry.io/schema/#0000005": "PPR103739", - "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/ppr/$1", - "https://bioregistry.io/schema/#0000008": "^PPR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/ppr/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://europepmc.org/article/ppr/PPR103739" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ppr" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BILA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ecoportal", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The LifeWatch ERIC repository of semantic resources for the ecological domain." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.taxonomy" + }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/supfam" }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.analyte" }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/STY" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unists" }, { - "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EcoPortal" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://ecoportal.lifewatch.eu" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "AGROVOC" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "http://ecoportal.lifewatch.eu/ontologies/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4494-839X" - } - }, - { - "@id": "https://bioregistry.io/registry/xsd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "XML Schema Definition" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biocontext/xsd" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/2001/XMLSchema" - }, - "https://bioregistry.io/schema/#0000005": "decimal", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2001/XMLSchema#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2001/XMLSchema#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/2001/XMLSchema#decimal" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "xsd" - } - }, - { - "@id": "https://orcid.org/0000-0002-5640-5491", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matt Yoder" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycoepitope" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirnest" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pathwaycommons" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nuclearbd" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein" + }, { - "@value": "mjyoder@illinois.edu" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression" }, { - "@value": "diapriid@gmail.com" - } - ] - }, - { - "@id": "https://orcid.org/0000-0001-5282-3250", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sean May" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sean@arabidopsis.org.uk" - } - }, - { - "@id": "http://aber-owl.net/ontology/TAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ligandexpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OBCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/vto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://edamontology.org/data_2605", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/cls", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Lines Service" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cls.shop/" - }, - "https://bioregistry.io/schema/#0000005": "300108/p3934_A-172", - "https://bioregistry.io/schema/#0000006": "https://cls.shop/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cls.shop/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cls.shop/300108/p3934_A-172" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cls" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/dbd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/sstoss", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sequence-Structural Templates of Single-member Superfamilies" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/sstoss" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp" + }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://caps.ncbs.res.in/SSTOSS/index.htm" - }, - "https://bioregistry.io/schema/#0000005": "01.01.005", - "https://bioregistry.io/schema/#0000006": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=01.01.005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sstoss" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/tfclass", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Classification of Transcription Factors in Mammalia" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen" + }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon" }, { - "@id": "https://fairsharing.org/FAIRsharing.XykycZ" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rouge" + }, { - "@value": "transcriptomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code" }, { - "@value": "phylogenetics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/begdb" }, { - "@value": "bioinformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://tfclass.bioinf.med.uni-goettingen.de" - }, - "https://bioregistry.io/schema/#0000005": "2.1.1", - "https://bioregistry.io/schema/#0000006": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=2.1.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tfclass" - } - }, - { - "@id": "http://aber-owl.net/ontology/IDODEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_327", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biocarta.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/UPA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/ddinter.drug", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Curated Drug-Drug Interactions Database - Drug" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ccds" + }, { - "@value": "drugs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc" }, { - "@value": "chemistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb" }, { - "@value": "relationships" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ddinter.scbdd.com" - }, - "https://bioregistry.io/schema/#0000005": "DDInter20", - "https://bioregistry.io/schema/#0000006": "http://ddinter.scbdd.com/ddinter/drug-detail/$1", - "https://bioregistry.io/schema/#0000008": "^DDInter\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3604-3785" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://ddinter.scbdd.com/ddinter/drug-detail/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ddinter.scbdd.com/ddinter/drug-detail/DDInter20" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ddinter.drug" - } - }, - { - "@id": "http://aber-owl.net/ontology/UPHENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0002-4142-7153", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sabrina Toro" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Sabrina@tislab.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/mba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the mouse brain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Brain Atlas" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mouse.brain-map.org" - }, - "https://bioregistry.io/schema/#0000005": "688", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/mba/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N9c2d149a8169411dafddcffb9f24523d" - }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/mba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/mba/688" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mba" - } - }, - { - "@id": "_:N9c2d149a8169411dafddcffb9f24523d", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allen Institute for Brain Science" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "chinhda@alleninstitute.org" - } - }, - { - "@id": "http://www.ontobee.org/ontology/EPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011213", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNII", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/asin", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Amazon Standard Identification Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cbioportal" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex" }, { - "@id": "https://registry.identifiers.org/registry/asin" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbg2introns" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.amazon.co.uk/gp/help/customer/display.html/277-3416785-8259466?ie=UTF8&nodeId=898182" - }, - "https://bioregistry.io/schema/#0000005": "0471491039", - "https://bioregistry.io/schema/#0000006": "https://amzn.com/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://amzn.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://amzn.com/0471491039" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "asin" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/psdo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Display-Lab/psdo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Performance Summary Display Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat" + }, { - "@id": "http://www.ontobee.org/ontology/PSDO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PSDO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model" }, { - "@id": "http://aber-owl.net/ontology/PSDO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox" }, { - "@id": "https://www.obofoundry.org/ontology/psdo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Display-Lab/psdo" - }, - "https://bioregistry.io/schema/#0000005": "0000055", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PSDO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/psdo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor" + }, { - "@id": "https://bioregistry.io/registry/stato" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro" }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012" }, { - "@id": "https://bioregistry.io/registry/bfo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9117-9338" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PSDO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PSDO_0000055" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "psdo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/registry/co_330", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CIP - potato ontology - december 2018", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Potato ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ" + }, { - "@id": "https://fairsharing.org/FAIRsharing.4fa657" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uspto" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos" }, { - "@id": "https://cropontology.org/ontology/CO_330" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_330" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker" }, { - "@value": "botany" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.protein" }, { - "@value": "agriculture" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_330/Potato" - }, - "https://bioregistry.io/schema/#0000005": "0000106", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_330:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_330/Potato/owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N167e307fdbd04948979ace60f0f6d68e" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_330:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_330:0000106" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_330" - } - }, - { - "@id": "_:N167e307fdbd04948979ace60f0f6d68e", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://bioregistry.io/registry/rs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology of rat strains", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Strain Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy" + }, { - "@id": "http://www.ontobee.org/ontology/RS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd" }, { - "@id": "http://aber-owl.net/ontology/RS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target" }, { - "@id": "https://www.obofoundry.org/ontology/rs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao" }, { - "@id": "https://fairsharing.org/FAIRsharing.vajn3f" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/rs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RS" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive" + }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/rgdweb/search/strains.html" - }, - "https://bioregistry.io/schema/#0000005": "0001807", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5256-8683" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RS_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/RS_0001807" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rs" - } - }, - { - "@id": "https://bioregistry.io/registry/wwf.ecoregion", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "World Wildlife Fund Ecoregion" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1294" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.worldwildlife.org/biomes" - }, - "https://bioregistry.io/schema/#0000005": "AT1402", - "https://bioregistry.io/schema/#0000006": "https://www.worldwildlife.org/ecoregions/$1", - "https://bioregistry.io/schema/#0000008": "^AT\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "WWF" - }, - "https://bioregistry.io/schema/#0000024": "https://www.worldwildlife.org/ecoregions/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.worldwildlife.org/ecoregions/AT1402" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wwf.ecoregion" - } - }, - { - "@id": "https://bioregistry.io/registry/pesticides", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alan Wood's Pesticides" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.alanwood.net/pesticides" - }, - "https://bioregistry.io/schema/#0000005": "derivatives%2Fthiocyclam%20hydrochloride", - "https://bioregistry.io/schema/#0000006": "http://www.alanwood.net/pesticides/$1.html", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pesticides:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.alanwood.net/pesticides/derivatives%2Fthiocyclam%20hydrochloride.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pesticides" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.evfe2s", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0003-1321-3956", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Al Kikhney" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "a.kikhney@embl-hamburg.de" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOCORE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MeSH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-8600-949X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Evan Patterson" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "evan@epatters.org" - } - }, - { - "@id": "https://bioregistry.io/registry/gramene.qtl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gramene QTL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod" }, { - "@id": "https://registry.identifiers.org/registry/gramene.qtl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gramene.org/" - }, - "https://bioregistry.io/schema/#0000005": "CQG5", - "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "GR_QTL" - }, - "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQG5" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gramene.qtl" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/ENVO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/chemspider", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChemSpider" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride" + }, { - "@id": "http://edamontology.org/data_1173" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db" }, { - "@id": "http://www.wikidata.org/entity/P661" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ma" }, { - "@id": "https://fairsharing.org/FAIRsharing.96f3gm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol" }, { - "@id": "https://registry.bio2kg.org/resource/chemspider" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide" }, { - "@id": "https://registry.identifiers.org/registry/chemspider" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/knapsack" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMSPIDER" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go" }, { - "@id": "https://www.re3data.org/repository/r3d100010205" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacdive" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed" }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000405" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido" + }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl" }, { - "@value": "molecules" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi" }, { - "@value": "chemistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mp" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.chemspider.com/" - }, - "https://bioregistry.io/schema/#0000005": "56586", - "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/Chemical-Structure.$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0412-9018" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway" + }, { - "@value": "ChemSpiderID" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco" }, { - "@value": "Chemspider" - } - ], - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/chemspider:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.chemspider.com/Chemical-Structure.56586.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "chemspider" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.e1byny", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mirbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/gsso", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biolink", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P231", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BOLD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/togovar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/pharmacodb.tissue", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmacoDB Tissues" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pharmacodb.ca/tissues" - }, - "https://bioregistry.io/schema/#0000005": "13", - "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/tissues/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/tissues/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pharmacodb.ca/tissues/13" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmacodb.tissue" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.v8se8r", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://edamontology.org/data_2615", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mfo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pmp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://aber-owl.net/ontology/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/PSIMOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DDPHENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mmmp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ohpi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OHPI/ohpi" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Host Pathogen Interactions" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mo" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.cluster" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/snomedct" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.compound" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chickenqtldb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls" + }, { - "@id": "http://aber-owl.net/ontology/OHPI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OHPI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model" }, { - "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod" }, { - "@id": "http://www.ontobee.org/ontology/OHPI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo" }, { - "@id": "https://www.obofoundry.org/ontology/ohpi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/protonet.proteincard" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.study" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OHPI/ohpi" - }, - "https://bioregistry.io/schema/#0000005": "9001411", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHPI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ohpi.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5159-414X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHPI_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OHPI_9001411" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ohpi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/hgnc.genefamily", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/ORTH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/cgnc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chicken Gene Nomenclature Consortium" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii" + }, { - "@id": "https://www.re3data.org/repository/r3d100012429" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cldb" }, { - "@id": "https://registry.bio2kg.org/resource/cgnc" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://birdgenenames.org/cgnc/" - }, - "https://bioregistry.io/schema/#0000005": "10087", - "https://bioregistry.io/schema/#0000006": "http://birdgenenames.org/cgnc/GeneReport?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map" + }, { - "@value": "CGNC" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile" }, { - "@value": "BirdBase" - } - ], - "https://bioregistry.io/schema/#0000024": "http://birdgenenames.org/cgnc/GeneReport?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://birdgenenames.org/cgnc/GeneReport?id=10087" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cgnc" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/FOODON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/MRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.djsbw2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/sgn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/tkg", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tohoku University cell line catalog" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www2.idac.tohoku.ac.jp/dep/ccr/" - }, - "https://bioregistry.io/schema/#0000005": "0221", - "https://bioregistry.io/schema/#0000006": "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/tkg:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/0221.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "tkg" - } - }, - { - "@id": "https://bioregistry.io/registry/lcsh", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Library of Congress Subject Headings" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank" + }, { - "@id": "https://fairsharing.org/FAIRsharing.d31795" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap" }, { - "@id": "http://www.wikidata.org/entity/P244" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn" }, { - "@id": "https://bartoc.org/en/node/454" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://id.loc.gov/authorities" - }, - "https://bioregistry.io/schema/#0000005": "nb2018006591", - "https://bioregistry.io/schema/#0000006": "https://id.loc.gov/authorities/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\d{8,10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs" + }, { - "@value": "lcnaf" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model" }, { - "@value": "lcnafid" - } - ], - "https://bioregistry.io/schema/#0000024": "https://id.loc.gov/authorities/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://id.loc.gov/authorities/nb2018006591" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lcsh" - } - }, - { - "@id": "https://bioregistry.io/registry/wikipathways.vocab", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology supporting data modeling in WikiPathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "WikiPathways Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human" }, { - "@id": "http://aber-owl.net/ontology/WIKIPATHWAYS" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.wikipathways.org" - }, - "https://bioregistry.io/schema/#0000005": "DataNode", - "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/WIKIPATHWAYS/225/wikipathways.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" - }, - "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23DataNode" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "wikipathways.vocab" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/stato", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TIME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0044", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DiscoverX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/scholia.resource", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A frontend to Wikidata", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scholia Registry" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene" + }, { - "@value": "registry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap" }, { - "@value": "wikidata" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://scholia.toolforge.org/" - }, - "https://bioregistry.io/schema/#0000005": "doi", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/scholia/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/scholia/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/scholia/doi" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "scholia.resource" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SYMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/alfred", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The ALlele FREquency Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/alfred" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound" + }, { - "@value": "classification" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://alfred.med.yale.edu" - }, - "https://bioregistry.io/schema/#0000005": "LO362836C", - "https://bioregistry.io/schema/#0000006": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=LO362836C" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "alfred" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010910", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblFungi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/agsd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/afo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Allotrope Merged Ontology Suite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allotrope Merged Ontology Suite" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/AFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doid" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam" }, { - "@id": "http://www.ontobee.org/ontology/AFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment" }, { - "@id": "https://fairsharing.org/FAIRsharing.595710" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/agricola" }, { - "@id": "http://aber-owl.net/ontology/AFO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so" + }, { - "@value": "forest management" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record" }, { - "@value": "food chemistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr" }, { - "@value": "environmental science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex" }, { - "@value": "agriculture" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi" }, { - "@value": "veterinary medicine" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase" }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc" }, { - "@value": "agricultural engineering" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.allotrope.org/" - }, - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.allotrope.org/voc/afo/merged/REC/2023/09/merged-without-qudt-and-inferred" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Ndc3b3940e66846f99762ce35a820697b" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "afo" - } - }, - { - "@id": "_:Ndc3b3940e66846f99762ce35a820697b", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allotrope Foundation" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "more.info@allotrope.org" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/FALDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "http://aber-owl.net/ontology/GNO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/drugbank.condition", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Indications and other conditions in drugbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Condition" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://go.drugbank.com" - }, - "https://bioregistry.io/schema/#0000005": "DBCOND0066902", - "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/indications/$1", - "https://bioregistry.io/schema/#0000008": "^DBCOND\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/indications/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://go.drugbank.com/indications/DBCOND0066902" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.condition" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DUO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/cubedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cube db" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm" }, { - "@id": "https://registry.identifiers.org/registry/cubedb" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html" - }, - "https://bioregistry.io/schema/#0000005": "AKR", - "https://bioregistry.io/schema/#0000006": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cubedb:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/AKR/" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cubedb" - } - }, - { - "@id": "https://bioregistry.io/registry/ensembl", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/emdb" + }, { - "@id": "https://bioregistry.io/registry/ensembl.bacteria" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb" }, { - "@id": "https://bioregistry.io/registry/ensembl.fungi" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ensembl Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform" + }, { - "@id": "https://registry.identifiers.org/registry/ensembl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb" }, { - "@id": "http://www.wikidata.org/entity/P594" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent" }, { - "@id": "https://fairsharing.org/FAIRsharing.fx0mw7" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus" }, { - "@id": "https://www.uniprot.org/database/DB-0023" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule" }, { - "@id": "http://edamontology.org/data_2610" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec" }, { - "@id": "https://www.re3data.org/repository/r3d100010228" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc" + }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase" }, { - "@value": "comparative genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/refseq" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ensembl.org/" - }, - "https://bioregistry.io/schema/#0000005": "ENSG00000139618", - "https://bioregistry.io/schema/#0000006": "https://www.ensembl.org/id/$1", - "https://bioregistry.io/schema/#0000008": "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "Ensembl" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ensembl.org/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ensembl.org/id/ENSG00000139618" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ensembl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/fao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/go.model", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology Causal Assembly Model" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.geneontology.org/gocam" - }, - "https://bioregistry.io/schema/#0000005": "5fce9b7300001250", - "https://bioregistry.io/schema/#0000006": "http://noctua.geneontology.org/editor/graph/gomodel:$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://noctua.geneontology.org/editor/graph/gomodel:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://noctua.geneontology.org/editor/graph/gomodel:5fce9b7300001250" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "go.model" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/biosystems", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/napdi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Natural Product-Drug Interaction Research Data Repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.bioassay" + }, { - "@id": "https://registry.identifiers.org/registry/napdi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon" }, { - "@id": "https://fairsharing.org/FAIRsharing.y9x8wk" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb" + }, { - "@value": "pharmacology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf" }, { - "@value": "biomedical science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://repo.napdi.org/" - }, - "https://bioregistry.io/schema/#0000005": "28", - "https://bioregistry.io/schema/#0000006": "https://repo.napdi.org/study/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2993-2085" - }, - "https://bioregistry.io/schema/#0000024": "https://repo.napdi.org/study/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://repo.napdi.org/study/28" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "napdi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8hcczk", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/beetlebase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/ftt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Feature Type Thesaurus" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://apps.usgs.gov/thesaurus/thesaurus-full.php?thcode=3" - }, - "https://bioregistry.io/schema/#0000005": "273", - "https://bioregistry.io/schema/#0000006": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=273" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ftt" - } - }, - { - "@id": "https://bioregistry.io/registry/viaf", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Virtual International Authority File" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome" }, { - "@id": "https://bartoc.org/en/node/2053" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events" }, { - "@id": "https://registry.identifiers.org/registry/viaf" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://viaf.org" - }, - "https://bioregistry.io/schema/#0000005": "75121530", - "https://bioregistry.io/schema/#0000006": "http://viaf.org/viaf/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://viaf.org/viaf/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://viaf.org/viaf/75121530" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "viaf" - } - }, - { - "@id": "https://bioregistry.io/registry/nci.drug", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier of an entry in the NCI Drug Dictionary", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCI Drug Dictionary ID" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P11623" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cancer.gov/publications/dictionaries/cancer-drug" - }, - "https://bioregistry.io/schema/#0000005": "beta-carotene", - "https://bioregistry.io/schema/#0000006": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/beta-carotene" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nci.drug" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ido", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0002-8683-0050", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Montana Smith" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "montana.smith@pnnl.gov" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/vt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "http://www.wikidata.org/entity/P932", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ANTWEB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9w8ea0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.99da5f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bmrb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-5520-6597", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Imke Tammen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "imke.tammen@sydney.edu.au" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2013", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.isoform", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipedia.en" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnamods" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.drug" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/antibodyregistry" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.disease" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.element" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swisslipid" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tgd" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bto" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vbase2" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ms" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.gcms" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genecards" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Isoform" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc" + }, { - "@id": "https://registry.identifiers.org/registry/uniprot.isoform" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go.ref" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.uniprot.org/" - }, - "https://bioregistry.io/schema/#0000005": "Q5BJF6-3", - "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/isoforms/$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UPISO" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/isoforms/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.uniprot.org/isoforms/Q5BJF6-3" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.isoform" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dommino", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/MCRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5f5mfm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MAXO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://aber-owl.net/ontology/AGRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smart", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SLKBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://edamontology.org/data_2758", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/radlex", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RSNA Informatics RadLex" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu" + }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind" }, { - "@id": "https://bioportal.bioontology.org/ontologies/RADLEX" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl" }, { - "@id": "https://fairsharing.org/FAIRsharing.shm2f2" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact" }, { - "@id": "http://aber-owl.net/ontology/RADLEX" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module" + }, { - "@value": "radiology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.enzyme" }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd" }, { - "@value": "clinical studies" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cabri" }, { - "@value": "medical informatics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stap" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://radlex.org" - }, - "https://bioregistry.io/schema/#0000005": "RID1", - "https://bioregistry.io/schema/#0000006": "https://radlex.org/RID/$1", - "https://bioregistry.io/schema/#0000008": "^RID\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/RADLEX/37/radlex.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8d459216004f4c60a3ff474a65dbf188" - }, - "https://bioregistry.io/schema/#0000024": "https://radlex.org/RID/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://radlex.org/RID/RID1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "radlex" - } - }, - { - "@id": "_:N8d459216004f4c60a3ff474a65dbf188", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Radiological Society of North America" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "radlex-feedback@lists.rsna.org" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.v9fya8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Cluster", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2ma4gq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/doqcs.pathway", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/hgnc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.PTHCMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/fyler", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A hierarchical classification of congenital heart disease ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fyler" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.elsevier.com/books/nadas-pediatric-cardiology/9781416023906" - }, - "https://bioregistry.io/schema/#0000005": "4447", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "fyler" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/swiss-model", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SWISS-MODEL Repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily" + }, { - "@id": "https://fairsharing.org/FAIRsharing.vxz9pn" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi" }, { - "@id": "https://registry.identifiers.org/registry/swiss-model" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus" }, { - "@id": "https://www.re3data.org/repository/r3d100010605" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus" }, { - "@id": "https://registry.bio2kg.org/resource/swissmodel" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.protein" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target" + }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon" }, { - "@value": "structure" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://swissmodel.expasy.org" - }, - "https://bioregistry.io/schema/#0000005": "P23298", - "https://bioregistry.io/schema/#0000006": "https://swissmodel.expasy.org/repository/uniprot/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2715-335X" - }, - "https://bioregistry.io/schema/#0000024": "https://swissmodel.expasy.org/repository/uniprot/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://swissmodel.expasy.org/repository/uniprot/P23298" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "swiss-model" - } - }, - { - "@id": "https://orcid.org/0000-0002-2061-091X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "George Gkoutos" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar" + }, { - "@value": "g.gkoutos@bham.ac.uk" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo" }, { - "@value": "g.gkoutos@gmail.com" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/miriam", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain.", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref" + }, { - "@id": "https://bioregistry.io/registry/miriam.resource" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rebase" }, { - "@id": "https://bioregistry.io/registry/miriam.collection" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Identifiers.org namespace" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd" + }, { - "@id": "https://fairsharing.org/FAIRsharing.ap169a" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family" }, { - "@id": "http://edamontology.org/data_1162" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus" }, { - "@id": "https://registry.identifiers.org/registry/identifiers.namespace" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.gene" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea" }, { - "@value": "biochemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk" - }, - "https://bioregistry.io/schema/#0000005": "pubmed", - "https://bioregistry.io/schema/#0000006": "https://registry.identifiers.org/registry/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-z_:\\.-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6309-7327" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "identifiers.namespace" - }, - "https://bioregistry.io/schema/#0000024": "https://registry.identifiers.org/registry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://registry.identifiers.org/registry/pubmed" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.genes", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vario" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion" }, { - "@id": "https://bioregistry.io/registry/kegg" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Genes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENES" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/interpro" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genes" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb" }, { - "@id": "http://www.wikidata.org/entity/P665" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.ligm" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb" }, { - "@id": "https://registry.identifiers.org/registry/kegg.genes" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb" + }, { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.vocabulary" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/genes.html" - }, - "https://bioregistry.io/schema/#0000005": "bsu:BSU01340", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+:[\\w\\d\\.-]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/bsu:BSU01340" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.genes" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EDDA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/odam", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Open Data for Access and Mining" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/odam" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metabolome.cgfb.u-bordeaux.fr/" - }, - "https://bioregistry.io/schema/#0000005": "frim1", - "https://bioregistry.io/schema/#0000006": "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/odam:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pmb-bordeaux.fr/getdata/json/frim1/datapackage?links=1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "odam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NOMEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/sbo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBI-BioModels/SBO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Systems Biology Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid" + }, { - "@id": "http://www.ontobee.org/ontology/SBO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp" }, { - "@id": "https://registry.bio2kg.org/resource/sbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb" }, { - "@id": "https://www.obofoundry.org/ontology/sbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb" }, { - "@id": "http://aber-owl.net/ontology/SBO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SBO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb" }, { - "@id": "https://fairsharing.org/FAIRsharing.s19src" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data" }, { - "@id": "https://registry.identifiers.org/registry/sbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SBO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbank" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino" }, { - "@value": "systems biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/sbo/" - }, - "https://bioregistry.io/schema/#0000005": "0000485", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SBO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/sbo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain" + }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.organ" }, { - "@id": "https://bioregistry.io/registry/proco" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0705-9809" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SBO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/SBO_0000485" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sbo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013638", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pmp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/obcs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/redfly", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010153", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/rebec", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brazilian Registry of Clinical Trials" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ensaiosclinicos.gov.br" - }, - "https://bioregistry.io/schema/#0000005": "RBR-6qvdftm", - "https://bioregistry.io/schema/#0000006": "https://ensaiosclinicos.gov.br/rg/$1", - "https://bioregistry.io/schema/#0000008": "^RBR-\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ensaiosclinicos.gov.br/rg/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://ensaiosclinicos.gov.br/rg/RBR-6qvdftm" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rebec" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3852", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000565", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_350", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/fungidb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FungiDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.protein" + }, { - "@id": "https://fairsharing.org/FAIRsharing.xf30yc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidbank" }, { - "@id": "https://registry.identifiers.org/registry/fungidb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl" }, { - "@id": "https://www.re3data.org/repository/r3d100011906" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genomics" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fungidb.org/fungidb" - }, - "https://bioregistry.io/schema/#0000005": "CNBG_0001", - "https://bioregistry.io/schema/#0000006": "https://fungidb.org/fungidb/app/record/gene/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7591-0020" - }, - "https://bioregistry.io/schema/#0000024": "https://fungidb.org/fungidb/app/record/gene/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://fungidb.org/fungidb/app/record/gene/CNBG_0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fungidb" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0119", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://registry.identifiers.org/registry/euclinicaltrials", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.chain", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Chain" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/uniprot.chain" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org" - }, - "https://bioregistry.io/schema/#0000005": "PRO_0000016681", - "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/annotation/$1", - "https://bioregistry.io/schema/#0000008": "^PRO_[0-9]{10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UPPRO" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/annotation/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.uniprot.org/annotation/PRO_0000016681" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.chain" - } - }, - { - "@id": "https://bioregistry.io/registry/tgma", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of mosquitoes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/VEuPathDB-ontology/TGMA" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mosquito gross anatomy ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/TGMA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite" }, { - "@id": "https://www.obofoundry.org/ontology/tgma" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbook" }, { - "@id": "https://fairsharing.org/FAIRsharing.dqnfkg" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.gene" }, { - "@id": "http://www.ontobee.org/ontology/TGMA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb" }, { - "@id": "http://aber-owl.net/ontology/TGMA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb" }, { - "@id": "https://registry.bio2kg.org/resource/tgma" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror" + }, { - "@value": "anatomy" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers" }, { - "@value": "mosquito" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mamo" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.vectorbase.org/ontology-browser" - }, - "https://bioregistry.io/schema/#0000005": "0000984", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TGMA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/tgma.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1635-4810" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TGMA_", - "https://bioregistry.io/schema/#0000029": { - "@value": "tgma" - } - }, - { - "@id": "https://registry.identifiers.org/registry/drs.anv0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.h4j3qm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-6025-0015", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Heidi L. Rehm" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hrehm@mgh.harvard.edu" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/nmr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NMR-instrument specific component of metabolomics investigations" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/splash" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.protist" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lrg" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isni" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.pathway" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unigene" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NMR" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas" }, { - "@id": "https://registry.identifiers.org/registry/nmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NMR" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase" }, { - "@id": "http://aber-owl.net/ontology/NMR" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid" }, { - "@id": "https://registry.bio2kg.org/resource/nmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc" }, { - "@id": "https://www.obofoundry.org/ontology/nmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bold.taxonomy" + }, { - "@value": "nmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2" }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.growthstage" }, { - "@value": "owl" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://msi-ontology.sourceforge.net/" - }, - "https://bioregistry.io/schema/#0000005": "1000003", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://nmrml.org/cv/stable/nmrCV.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8014-6648" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "nmrcv" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:1000003" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nmr" - } - }, - { - "@id": "http://aber-owl.net/ontology/SPD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012315", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/px", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATHWAYCOMMONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TOKU-E", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/hepro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HEPRO is an ontology of informational entities and processes related to health procedures and health activities.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenLHS/HEPRO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Procedure Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://openlhs.github.io/HEPRO/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HEPRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/OpenLHS/HEPRO/raw/main/HEPRO.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3336-2476" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HEPRO_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/00kybxq39" - }, - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HEPRO_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hepro" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NHCDR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.np2wfz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-2999-0103", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jie Zheng" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jiezheng@pennmedicine.upenn.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/bfo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The upper level ontology upon which OBO Foundry ontologies are built.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BFO-ontology/BFO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Basic Formal Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase" + }, { - "@id": "https://www.obofoundry.org/ontology/bfo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder" }, { - "@id": "https://bioportal.bioontology.org/ontologies/BFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/BFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg" }, { - "@id": "https://fairsharing.org/FAIRsharing.wcpd6f" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.kinase" }, { - "@id": "http://aber-owl.net/ontology/BFO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein" }, { - "@id": "http://www.ontobee.org/ontology/BFO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/niaest" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp" }, { - "@value": "subject agnostic" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ifomis.org/bfo/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BFO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/bfo.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository" + }, { - "@id": "https://bioregistry.io/registry/hso" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle" }, { - "@id": "https://bioregistry.io/registry/colao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance" }, { - "@id": "https://bioregistry.io/registry/ado" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/registry/zp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd" }, { - "@id": "https://bioregistry.io/registry/cdno" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase" }, { - "@id": "https://bioregistry.io/registry/aism" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr" }, { - "@id": "https://bioregistry.io/registry/xpo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound" }, { - "@id": "https://bioregistry.io/registry/duo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord" }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.family" }, { - "@id": "https://bioregistry.io/registry/psdo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl" }, { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemspider" }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb" }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd" }, { - "@id": "https://bioregistry.io/registry/epio" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao" }, { - "@id": "https://bioregistry.io/registry/lepao" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.mouse" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.protein" }, { - "@id": "https://bioregistry.io/registry/ons" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1384-116X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BFO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/BFO_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bfo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.grp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/neurolex", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex).", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc" + }, { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Neurolex" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol" + }, { - "@id": "https://registry.identifiers.org/registry/neurolex" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurolex" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis" }, { - "@id": "https://registry.bio2kg.org/resource/neurolex" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ordb" + }, { - "@value": "neuroscience" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop" }, { - "@value": "classification" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "https://bioregistry.io/schema/#0000005": "4", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project" + }, { - "@value": "nlx" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.reaction" }, { - "@value": "NLX" - } - ], - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_4" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "neurolex" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fairsharing", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.96", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ncit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/niaEST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/registry/dto", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DrugTargetOntology/DTO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drug Target Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod" + }, { - "@id": "http://aber-owl.net/ontology/DTO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction" }, { - "@id": "https://bioportal.bioontology.org/ontologies/DTO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.tke3y2" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricegap" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn" }, { - "@value": "drug discovery" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pato" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/crisprdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cosmic" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DrugTargetOntology/DTO" - }, - "https://bioregistry.io/schema/#0000005": "90000018", - "https://bioregistry.io/schema/#0000006": "http://www.drugtargetontology.org/dto/DTO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/DTO/4/dto.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/pr" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N399ec073fe08407c9358ec8cdfa97db1" - }, - "https://bioregistry.io/schema/#0000024": "http://www.drugtargetontology.org/dto/DTO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.drugtargetontology.org/dto/DTO_90000018" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dto" - } - }, - { - "@id": "_:N399ec073fe08407c9358ec8cdfa97db1", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stephan Schurer" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sschurer@med.miami.edu" - } - }, - { - "@id": "http://aber-owl.net/ontology/HAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/rism", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "Name-to-Thing" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RISM Online" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://n2t.net" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/rism" + "https://bioregistry.io/schema/#0000005": { + "@value": "chebi" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rism.digital/" + "https://bioregistry.io/schema/#0000006": { + "@value": "https://n2t.net/$1:" }, - "https://bioregistry.io/schema/#0000005": "people/11035", - "https://bioregistry.io/schema/#0000006": "https://rism.online/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z]+/[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://rism.online/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://rism.online/people/11035" + "https://bioregistry.io/schema/#0000007": { + "@value": "https://n2t.net/$1:$2" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "rism" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7604-8041" } }, { - "@id": "https://bioregistry.io/registry/faldo", + "@id": "https://bioregistry.io/registry/wikipathways", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources", + "http://purl.org/dc/terms/description": "WikiPathways is a database of biological pathways maintained by and for the scientific community.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OBF/FALDO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Feature Annotation Location Description Ontology " + "@value": "WikiPathways" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/FALDO" + "@id": "http://www.wikidata.org/entity/P2410" }, { - "@id": "https://fairsharing.org/FAIRsharing.haxp7g" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIPATHWAYS" }, { - "@id": "https://bioportal.bioontology.org/ontologies/FALDO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/faldo" + "@id": "https://registry.bio2kg.org/resource/wikipathways" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/FALDO" + "@id": "https://www.re3data.org/repository/r3d100013316" + }, + { + "@id": "http://edamontology.org/data_3952" + }, + { + "@id": "https://registry.identifiers.org/registry/wikipathways" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g7b4rj" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "epidemiology" }, { - "@value": "genetics" + "@value": "pathway" + }, + { + "@value": "virology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://biohackathon.org/resource/faldo" - }, - "https://bioregistry.io/schema/#0000005": "ForwardStrandPosition", - "https://bioregistry.io/schema/#0000006": "http://biohackathon.org/resource/faldo#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/FALDO/1/faldo.owl" + "@id": "http://www.wikipathways.org/" }, + "https://bioregistry.io/schema/#0000005": "WP732", + "https://bioregistry.io/schema/#0000006": "http://www.wikipathways.org/instance/$1", + "https://bioregistry.io/schema/#0000008": "^WP\\d{1,5}(\\_r\\d+)?$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Ndeffa5ef68f746f4b3e6b8b05bb2a287" - }, - "https://bioregistry.io/schema/#0000024": "http://biohackathon.org/resource/faldo#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://biohackathon.org/resource/faldo#ForwardStrandPosition" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "faldo" - } - }, - { - "@id": "_:Ndeffa5ef68f746f4b3e6b8b05bb2a287", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FALDO group" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "faldo@googlegroups.com" - } - }, - { - "@id": "https://bioregistry.io/registry/nsc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier used by the Cancer Chemotherapy National Service Center.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "USA National Service Center Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://semanticscience.org/resource/CHEMINF_000565" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wiki.nci.nih.gov/display/NCIDTPdata/Chemical+Data" + "@id": "https://orcid.org/0000-0001-7542-0286" }, - "https://bioregistry.io/schema/#0000005": "27223", - "https://bioregistry.io/schema/#0000006": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=", + "https://bioregistry.io/schema/#0000024": "http://www.wikipathways.org/instance/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=27223" + "@id": "http://www.wikipathways.org/instance/WP732" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nsc" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OOSTT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3606", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@value": "wikipathways" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci", + "@id": "https://fairsharing.org/FAIRsharing.ay74mj", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/paxdb.protein", + "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/confident.event", + "@id": "https://bioregistry.io/registry/emmo.cif", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.", + "http://purl.org/dc/terms/description": "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/emmo-repo/CIF-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ConfIDent Event" + "@value": "Crystallographic Information Framework" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "metascience" - }, - { - "@value": "meetings" - }, - { - "@value": "conferences" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.confident-conference.org/index.php/Category:Event" + "@id": "https://www.iucr.org/resources/cif" }, - "https://bioregistry.io/schema/#0000005": "37af84f2-bfd7-4653-b608-eaff44febba6", - "https://bioregistry.io/schema/#0000006": "https://www.confident-conference.org/index.php/Event:$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", + "https://bioregistry.io/schema/#0000005": "_space_group_symop.operation_xyz", + "https://bioregistry.io/schema/#0000006": "http://emmo.info/emmo/cif-core#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1595-3213" + "@id": "https://orcid.org/0000-0002-1560-809X" }, - "https://bioregistry.io/schema/#0000024": "https://www.confident-conference.org/index.php/Event:", + "https://bioregistry.io/schema/#0000024": "http://emmo.info/emmo/cif-core#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.confident-conference.org/index.php/Event:37af84f2-bfd7-4653-b608-eaff44febba6" + "@id": "http://emmo.info/emmo/cif-core#_space_group_symop.operation_xyz" }, "https://bioregistry.io/schema/#0000029": { - "@value": "confident.event" + "@value": "emmo.cif" } }, { - "@id": "https://registry.identifiers.org/registry/mex", + "@id": "https://bioregistry.io/metaregistry/biocontext/OPL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/xao", + "@id": "https://www.obofoundry.org/ontology/gsso", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein", + "@id": "https://fairsharing.org/FAIRsharing.wkaakq", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/AEO", + "@id": "https://bioportal.bioontology.org/ontologies/FMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.f2c119", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.identifiers.org/registry/civic.mpid", + "@id": "https://registry.bio2kg.org/resource/kegg.reaction", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/datf", + "@id": "https://bioregistry.io/registry/doco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.", + "http://purl.org/dc/terms/description": "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/doco" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Arabidopsis Transcription Factors" + "@value": "Document Components Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.162003" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/datf" - }, - { - "@id": "https://registry.bio2kg.org/resource/datf" - }, - { - "@id": "https://registry.identifiers.org/registry/datf" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DATF" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "regulation" + "@value": "subject agnostic" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://datf.cbi.pku.edu.cn/" + "@id": "http://www.sparontologies.net/ontologies/doco" }, - "https://bioregistry.io/schema/#0000005": "AT1G01030.1", - "https://bioregistry.io/schema/#0000006": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1", - "https://bioregistry.io/schema/#0000008": "^AT[1-5]G\\d{5}(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=", + "https://bioregistry.io/schema/#0000005": "Paragraph", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/doco/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/doco/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=AT1G01030.1" + "@id": "http://purl.org/spar/doco/Paragraph" }, "https://bioregistry.io/schema/#0000029": { - "@value": "datf" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "doco" } }, { - "@id": "https://bioregistry.io/registry/mobidb", + "@id": "https://bioregistry.io/registry/babelon", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MobiDB is a database of protein disorder and mobility annotations.", + "http://purl.org/dc/terms/description": "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/monarch-initiative/babelon" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MobiDB" + "@value": "Babelon" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.jwra3e" - }, - { - "@id": "https://www.uniprot.org/database/DB-0183" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB" - }, - { - "@id": "https://registry.identifiers.org/registry/mobidb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biology" - }, - { - "@value": "biomedical science" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mobidb.bio.unipd.it" - }, - "https://bioregistry.io/schema/#0000005": "P10636", - "https://bioregistry.io/schema/#0000006": "https://mobidb.org/$1", - "https://bioregistry.io/schema/#0000008": "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://monarch-initiative.github.io/babelon/" }, + "https://bioregistry.io/schema/#0000005": "translation_language", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/babelon/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z][a-z0-9_]+[a-z0-9]$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4525-7793" + "@id": "https://orcid.org/0000-0002-7356-1779" }, - "https://bioregistry.io/schema/#0000024": "https://mobidb.org/", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/babelon/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mobidb.org/P10636" + "@id": "https://w3id.org/babelon/translation_language" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mobidb" + "@value": "babelon" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB", + "@id": "http://www.ontobee.org/ontology/PCL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zv11j3", + "@id": "https://bioportal.bioontology.org/ontologies/MFMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads", + "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/noncodev4.rna", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.", + "@id": "https://www.re3data.org/repository/r3d100010142", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NONCODE v4 Transcript" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.rna" - }, - { - "@id": "https://registry.identifiers.org/registry/noncodev4.rna" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioinfo.org/NONCODEv4/" - }, - "https://bioregistry.io/schema/#0000005": "NONHSAT000001", - "https://bioregistry.io/schema/#0000006": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^NONHSAT\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=NONHSAT000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "noncodev4.rna" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://fairsharing.org/FAIRsharing.945c78", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/hl7.v3codesystem", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-0173-9080", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HL7 V2 Code Systems" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://terminology.hl7.org/codesystems-v2.html" - }, - "https://bioregistry.io/schema/#0000005": "AcknowledgementCondition", - "https://bioregistry.io/schema/#0000006": "https://terminology.hl7.org/CodeSystem-v3-$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://terminology.hl7.org/CodeSystem-v3-", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://terminology.hl7.org/CodeSystem-v3-AcknowledgementCondition" + "@value": "Robert Court" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hl7.v3codesystem" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "r.court@ed.ac.uk" } }, { - "@id": "http://aber-owl.net/ontology/FIX", + "@id": "http://aber-owl.net/ontology/VT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/nasc", + "@id": "https://bioregistry.io/metaregistry/biocontext/AFFY.PROBESET", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PGX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/ga4ghdos", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.", + "http://purl.org/dc/terms/description": "Assists in resolving data across cloud resources.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NASC code" + "@value": "Data Object Service" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/NASC" - }, - { - "@id": "https://registry.identifiers.org/registry/nasc" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010906" - }, - { - "@id": "https://registry.bio2kg.org/resource/nasc" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc" + "@id": "https://bioregistry.io/metaregistry/biocontext/GA4GHDOS" }, { - "@id": "https://fairsharing.org/FAIRsharing.2sqcxs" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos" }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/ga4ghdos" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://arabidopsis.info/" + "@id": "http://github.com/ga4gh/data-object-service-schemas" }, - "https://bioregistry.io/schema/#0000005": "N1899", - "https://bioregistry.io/schema/#0000006": "http://arabidopsis.info/StockInfo?NASC_id=$1", - "https://bioregistry.io/schema/#0000008": "^(\\w+)?\\d+$", + "https://bioregistry.io/schema/#0000005": "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d", + "https://bioregistry.io/schema/#0000006": "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9\\-:#/\\.]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5282-3250" - }, - "https://bioregistry.io/schema/#0000024": "http://arabidopsis.info/StockInfo?NASC_id=", + "https://bioregistry.io/schema/#0000024": "https://dataguids.org/ga4gh/dos/v1/dataobjects/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://arabidopsis.info/StockInfo?NASC_id=N1899" + "@id": "https://dataguids.org/ga4gh/dos/v1/dataobjects/dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nasc" + "@value": "ga4ghdos" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism", + "@id": "https://bartoc.org/en/node/2022", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://www.re3data.org/repository/r3d100010566", + "@id": "https://fairsharing.org/FAIRsharing.c26a4e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://orcid.org/0000-0002-9553-7227", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "G. Thomas Hayman" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gthayman@mcw.edu" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://cropontology.org/ontology/CO_343", + "@id": "https://registry.identifiers.org/registry/rgd.qtl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/ICD10PCS", + "@id": "https://bioportal.bioontology.org/ontologies/LABO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.2m4ms9", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.42", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://www.obofoundry.org/ontology/ogg", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/narcis", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR", + "@id": "https://bioregistry.io/registry/rs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ontology of rat strains", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0003-2855-4120", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Steven G. E. Marsh" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "steven.marsh@ucl.ac.uk" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000005", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "An identifier for a resource or metaresource." + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has local unique identifier example" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@value": "Rat Strain Ontology" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://purl.org/vocab/vann/example" + "@id": "https://www.obofoundry.org/ontology/rs" }, { - "@id": "http://identifiers.org/idot/exampleIdentifier" + "@id": "http://www.ontobee.org/ontology/RS" }, { - "@id": "http://vocabularies.bridgedb.org/ops#idExample" + "@id": "http://aber-owl.net/ontology/RS" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vajn3f" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/RS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RS" + }, + { + "@id": "https://registry.bio2kg.org/resource/rs" } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CABRI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010586", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rgd.mcw.edu/rgdweb/search/strains.html" + }, + "https://bioregistry.io/schema/#0000005": "0001807", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/rat_strain/rat_strain.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5256-8683" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RS_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/RS_0001807" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rs" } }, { - "@id": "https://registry.identifiers.org/registry/rhea", + "@id": "https://registry.identifiers.org/registry/idr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/viperdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IEV", + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.CELL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION", + "@id": "https://bartoc.org/en/node/400", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.nygmp7", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/skos", + "@id": "https://registry.identifiers.org/registry/sio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/pd_st", + "@id": "https://bioportal.bioontology.org/ontologies/CRISP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/jax", + "@id": "https://bioregistry.io/registry/charprot", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information about the C57BL/6J. Includes genetic background and disease data.", + "http://purl.org/dc/terms/description": "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jackson Laboratories Strain" + "@value": "CharProt" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.5701h1" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAX" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "research" - }, - { - "@value": "supply" - }, - { - "@value": "strain" - }, - { - "@value": "repository" - }, - { - "@value": "genetic engineering" - }, - { - "@value": "gene" - }, - { - "@value": "model" - }, - { - "@value": "mice" - }, - { - "@value": "mouse" - }, - { - "@value": "subject" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT" }, { - "@value": "knockout" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/charprot" }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/charprot" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.jax.org/strain" + "@id": "http://www.jcvi.org/charprotdb" }, - "https://bioregistry.io/schema/#0000005": "004435", - "https://bioregistry.io/schema/#0000006": "https://www.jax.org/strain/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000005": "CH_001923", + "https://bioregistry.io/schema/#0000006": "http://www.jcvi.org/charprotdb/index.cgi/view/$1", + "https://bioregistry.io/schema/#0000008": "^CH_\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.jax.org/strain/", + "https://bioregistry.io/schema/#0000024": "http://www.jcvi.org/charprotdb/index.cgi/view/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.jax.org/strain/004435" + "@id": "http://www.jcvi.org/charprotdb/index.cgi/view/CH_001923" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jax" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012152", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "charprot" } }, { - "@id": "http://www.ontobee.org/ontology/GEO", + "@id": "https://bioregistry.io/metaregistry/go/resolve/HGNC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.re3data.org/repository/r3d100011198", + "@id": "https://www.obofoundry.org/ontology/tahe", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/gtr", + "@id": "https://bioregistry.io/registry/mmp.fun", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease", + "http://purl.org/dc/terms/description": "MarFun is manually curated database for marine fungi which is a part of the MAR databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genetic Testing Registry" + "@value": "MarFun" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/mmp.fun" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/gtr/" + "@id": "https://mmp.sfb.uit.no/databases/marfun" }, - "https://bioregistry.io/schema/#0000005": "AN0097748", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/gtr/conditions/$1", + "https://bioregistry.io/schema/#0000005": "MMP3888430", + "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marfun/#/records/$1", + "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mondo" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "medgen.gtr" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/gtr/conditions/", + "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marfun/#/records/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/gtr/conditions/AN0097748" + "@id": "https://mmp.sfb.uit.no/databases/marfun/#/records/MMP3888430" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gtr" + "@value": "mmp.fun" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP", + "@id": "https://bartoc.org/en/node/2054", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/schema/#0000007", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000002" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has resolver formatter" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.bio2kg.org/resource/disprot", + "@id": "https://www.obofoundry.org/ontology/duo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.re3data.org/repository/r3d100011556", + "@id": "https://bioportal.bioontology.org/ontologies/OGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://orcid.org/0000-0002-5497-0243", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Anita Bandrowski" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bandrow@gmail.com" + "@id": "http://www.wikidata.org/entity/P4732", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bartoc.org/en/node/2022", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.identifiers.org/registry/dailymed", + "@id": "https://registry.identifiers.org/registry/antweb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/ensembl.plant", + "@id": "https://bioregistry.io/registry/ccrid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Experimental Cell Resource Sharing Platform" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCRID" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cellresource.cn" + }, + "https://bioregistry.io/schema/#0000005": "4201PAT-CCTCC00348", + "https://bioregistry.io/schema/#0000006": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=4201PAT-CCTCC00348" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ccrid" } }, { - "@id": "http://edamontology.org/data_2741", + "@id": "https://www.uniprot.org/database/DB-0020", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://www.ontobee.org/ontology/EPO", + "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.5q1p14", + "@id": "https://fairsharing.org/FAIRsharing.sp3szt", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/FBbt", + "@id": "http://edamontology.org/data_2638", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/insdc.run", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An experimental run, served thrugh the ENA", + "@id": "https://registry.bio2kg.org/resource/uniprot.kw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/ecyano.entity", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/ecyano" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Nucleotide Sequence Database Collaboration (INSDC) Run" + "@value": "E-cyanobacterium entity" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/ecyano.entity" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.ENTITY" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.insdc.org/" + "@id": "http://www.e-cyanobacterium.org/bcs/entity/" }, - "https://bioregistry.io/schema/#0000005": "ERR436051", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/browser/view/$1", - "https://bioregistry.io/schema/#0000008": "^(E|D|S)RR[0-9]{6,}$", + "https://bioregistry.io/schema/#0000005": "23", + "https://bioregistry.io/schema/#0000006": "https://www.e-cyanobacterium.org/bcs/entity/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/browser/view/", + "https://bioregistry.io/schema/#0000024": "https://www.e-cyanobacterium.org/bcs/entity/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ena/browser/view/ERR436051" + "@id": "https://www.e-cyanobacterium.org/bcs/entity/23" }, "https://bioregistry.io/schema/#0000029": { - "@value": "insdc.run" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ecyano.entity" } }, { - "@id": "https://cropontology.org/ontology/CO_340", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.taxon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/ICEO", + "@id": "https://bioregistry.io/registry/bacmap.map", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BacMap Map" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.map" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.MAP" + }, + { + "@id": "https://registry.identifiers.org/registry/bacmap.map" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bacmap.wishartlab.com/" + }, + "https://bioregistry.io/schema/#0000005": "AP011135", + "https://bioregistry.io/schema/#0000006": "http://bacmap.wishartlab.com/maps/$1/index.html", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\_)?\\d+(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bacmap.map:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bacmap.wishartlab.com/maps/AP011135/index.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bacmap.map" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HDR", + "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000563", + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.33yggg", + "@id": "https://registry.identifiers.org/registry/repeatsdb.structure", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.sjhvyy", + "@id": "https://fairsharing.org/FAIRsharing.rja8qp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kd39j4", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/apo", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/LPT", + "@id": "http://aber-owl.net/ontology/MAXO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/cst", + "@id": "https://bioregistry.io/registry/zea", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.", + "http://purl.org/dc/terms/description": "Maize gross anatomy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Signaling Technology Pathways" + "@value": "Maize gross anatomy" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst" + "@id": "https://bioportal.bioontology.org/ontologies/ZEA" }, { - "@id": "https://registry.identifiers.org/registry/cst" + "@id": "https://registry.bio2kg.org/resource/zea" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZEA" }, { - "@id": "https://fairsharing.org/FAIRsharing.n8pxvx" + "@id": "http://aber-owl.net/ontology/ZEA" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CST" + "@id": "https://www.obofoundry.org/ontology/zea" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "obo" }, { - "@value": "life science" + "@value": "ontology" + }, + { + "@value": "anatomy" + }, + { + "@value": "maize" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cellsignal.com/pathways/index.html" + "@id": "http://www.maizemap.org/" }, - "https://bioregistry.io/schema/#0000005": "Akt_PKB", - "https://bioregistry.io/schema/#0000006": "http://www.cellsignal.com/reference/pathway/$1.html", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9_-]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cst:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cellsignal.com/reference/pathway/Akt_PKB.html" + "https://bioregistry.io/schema/#0000005": "ZEA_0015177", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZEA_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ZEA/2/zea.obo" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9316-2919" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZEA_", "https://bioregistry.io/schema/#0000029": { - "@value": "cst" + "@value": "zea" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EV", + "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PEPTIDE", + "@id": "https://registry.bio2kg.org/resource/giardiadb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/gpcrdb", + "@id": "https://fairsharing.org/FAIRsharing.6h8d2r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CTENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.ontobee.org/ontology/DUO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/genedb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.", + "http://purl.org/dc/terms/description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "G protein-coupled receptor database" + "@value": "GeneDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/gpcrdb" + "@id": "https://registry.bio2kg.org/resource/genedb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb" + "@id": "https://www.re3data.org/repository/r3d100010626" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB" + "@id": "http://www.wikidata.org/entity/P3382" }, { - "@id": "https://fairsharing.org/FAIRsharing.e4n3an" + "@id": "https://fairsharing.org/FAIRsharing.j7esqq" }, { - "@id": "https://www.uniprot.org/database/DB-0038" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GeneDB" }, { - "@id": "https://registry.bio2kg.org/resource/gpcrdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://edamontology.org/data_1035" + }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/genedb" }, { - "@value": "molecular biology" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB" }, { - "@value": "small molecule" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb" }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "life science" + }, + { + "@value": "genome" + }, + { + "@value": "sequence" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.gpcrdb.org/" - }, - "https://bioregistry.io/schema/#0000005": "RL3R1_HUMAN", - "https://bioregistry.io/schema/#0000006": "https://gpcrdb.org/protein/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4299-7561" + "@id": "https://www.genedb.org/" }, - "https://bioregistry.io/schema/#0000024": "https://gpcrdb.org/protein/", + "https://bioregistry.io/schema/#0000005": "LinJ.20.0070", + "https://bioregistry.io/schema/#0000006": "https://www.genedb.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^[\\w\\d\\.-]*$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.genedb.org/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://gpcrdb.org/protein/RL3R1_HUMAN" + "@id": "https://www.genedb.org/gene/LinJ.20.0070" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gpcrdb" + "@value": "genedb" } }, { - "@id": "https://orcid.org/0000-0001-8014-6648", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Daniel Schober" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "schober@imbi.uni-freiburg.de" + "@id": "https://registry.identifiers.org/registry/togovar", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/pride.project", + "@id": "https://bioregistry.io/metaregistry/biocontext/FIX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/mediadive.medium", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.", + "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PRIDE Project" + "@value": "MediaDive Medium" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PRIDE" - }, - { - "@id": "https://registry.identifiers.org/registry/pride.project" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE.PROJECT" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride.project" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/pride/" + "@id": "https://mediadive.dsmz.de/media" }, - "https://bioregistry.io/schema/#0000005": "PXD000440", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/pride/archive/projects/$1", - "https://bioregistry.io/schema/#0000008": "^P(X|R)D\\d{6}$", + "https://bioregistry.io/schema/#0000005": "77", + "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/medium/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+\\w?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/pride/archive/projects/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3909-7201" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/medium/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/pride/archive/projects/PXD000440" + "@id": "https://mediadive.dsmz.de/medium/77" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pride.project" + "@value": "mediadive.medium" } }, { - "@id": "http://aber-owl.net/ontology/CMO", + "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/datanator.metabolite", + "@id": "https://bioregistry.io/registry/hc.trial", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/datanator" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Datanator Metabolite" + "http://purl.org/dc/terms/description": "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/datanator.metabolite" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Health Canada Clinical Trials Database" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://datanator.info/" + "@id": "https://health-products.canada.ca/ctdb-bdec" }, - "https://bioregistry.io/schema/#0000005": "OUYCCCASQSFEME-MRVPVSSYSA-N", - "https://bioregistry.io/schema/#0000006": "https://www.datanator.info/metabolite/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z\\-]+$", + "https://bioregistry.io/schema/#0000005": "239287", + "https://bioregistry.io/schema/#0000006": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.datanator.info/metabolite/", + "https://bioregistry.io/schema/#0000024": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.datanator.info/metabolite/OUYCCCASQSFEME-MRVPVSSYSA-N" + "@id": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=239287" }, "https://bioregistry.io/schema/#0000029": { - "@value": "datanator.metabolite" + "@value": "hc.trial" } }, { - "@id": "https://bioregistry.io/registry/apo", + "@id": "https://registry.bio2kg.org/resource/loqate", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/bactibase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi.", + "http://purl.org/dc/terms/description": "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/ascomycete-phenotype-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ascomycete phenotype ontology" + "@value": "Bactibase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/APO" - }, - { - "@id": "https://www.obofoundry.org/ontology/apo" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dyqz3y" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/APO" + "@id": "https://www.re3data.org/repository/r3d100012755" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APO" + "@id": "https://fairsharing.org/FAIRsharing.5f5mfm" }, { - "@id": "http://www.ontobee.org/ontology/APO" + "@id": "https://registry.bio2kg.org/resource/bactibase" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "cell biology" - }, - { - "@value": "obo" + "@value": "protein" }, { - "@value": "ontology" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.yeastgenome.org/" - }, - "https://bioregistry.io/schema/#0000005": "0000184", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/APO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/apo.owl" + "@id": "http://bactibase.hammamilab.org" }, + "https://bioregistry.io/schema/#0000005": "BAC045", + "https://bioregistry.io/schema/#0000006": "http://bactibase.hammamilab.org/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5472-917X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/APO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/APO_0000184" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "apo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/snp500cancer", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SNP500Cancer" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/snp500cancer" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://snp500cancer.nci.nih.gov" - }, - "https://bioregistry.io/schema/#0000005": "TP53-47", - "https://bioregistry.io/schema/#0000006": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=", + "https://bioregistry.io/schema/#0000024": "http://bactibase.hammamilab.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=TP53-47" + "@id": "http://bactibase.hammamilab.org/BAC045" }, "https://bioregistry.io/schema/#0000029": { - "@value": "snp500cancer" + "@value": "bactibase" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RBK", + "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-4858-8056", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mathias Uhlen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mathias.uhlen@scilifelab.se" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.karvzj", + "@id": "https://www.re3data.org/repository/r3d100010419", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL", + "@id": "https://www.re3data.org/repository/r3d100012721", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/prefixcommons", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." + "@id": "https://bioregistry.io/registry/pharmgkb.drug", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://registry.bio2kg.org/resource/tair.protein" - }, - { - "@id": "https://registry.bio2kg.org/resource/snornalbmedb" - }, - { - "@id": "https://registry.bio2kg.org/resource/pandit" - }, - { - "@id": "https://registry.bio2kg.org/resource/rs" - }, - { - "@id": "https://registry.bio2kg.org/resource/hpa" - }, - { - "@id": "https://registry.bio2kg.org/resource/resid" - }, - { - "@id": "https://registry.bio2kg.org/resource/mmmp" - }, - { - "@id": "https://registry.bio2kg.org/resource/xco" - }, - { - "@id": "https://registry.bio2kg.org/resource/genenote" - }, - { - "@id": "https://registry.bio2kg.org/resource/bgee" - }, - { - "@id": "https://registry.bio2kg.org/resource/opb" - }, - { - "@id": "https://registry.bio2kg.org/resource/datf" - }, - { - "@id": "https://registry.bio2kg.org/resource/esldb" - }, - { - "@id": "https://registry.bio2kg.org/resource/interpro" - }, - { - "@id": "https://registry.bio2kg.org/resource/so" - }, - { - "@id": "https://registry.bio2kg.org/resource/hbvar" - }, - { - "@id": "https://registry.bio2kg.org/resource/mmsinc" - }, - { - "@id": "https://registry.bio2kg.org/resource/s_mart_db" - }, - { - "@id": "https://registry.bio2kg.org/resource/protcom" - }, - { - "@id": "https://registry.bio2kg.org/resource/pseudogene" - }, - { - "@id": "https://registry.bio2kg.org/resource/viroligo" - }, - { - "@id": "https://registry.bio2kg.org/resource/gnd" - }, - { - "@id": "https://registry.bio2kg.org/resource/vao" - }, - { - "@id": "https://registry.bio2kg.org/resource/psi.mod" - }, - { - "@id": "https://registry.bio2kg.org/resource/wikipedia" - }, - { - "@id": "https://registry.bio2kg.org/resource/eo" - }, - { - "@id": "https://registry.bio2kg.org/resource/sprint" - }, - { - "@id": "https://registry.bio2kg.org/resource/arachnoserver" - }, - { - "@id": "https://registry.bio2kg.org/resource/virgen" - }, - { - "@id": "https://registry.bio2kg.org/resource/snp500cancer" - }, - { - "@id": "https://registry.bio2kg.org/resource/pato" - }, - { - "@id": "https://registry.bio2kg.org/resource/protonet.cluster" - }, - { - "@id": "https://registry.bio2kg.org/resource/asap" - }, - { - "@id": "https://registry.bio2kg.org/resource/imgt.ligm" - }, - { - "@id": "https://registry.bio2kg.org/resource/eggnog" - }, - { - "@id": "https://registry.bio2kg.org/resource/kegg.gene" - }, - { - "@id": "https://registry.bio2kg.org/resource/pepbank" - }, - { - "@id": "https://registry.bio2kg.org/resource/intenz" - }, - { - "@id": "https://registry.bio2kg.org/resource/csa" - }, - { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways" - }, - { - "@id": "https://registry.bio2kg.org/resource/cellimage" - }, - { - "@id": "https://registry.bio2kg.org/resource/icdo" - }, - { - "@id": "https://registry.bio2kg.org/resource/planttfdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/addgene" - }, - { - "@id": "https://registry.bio2kg.org/resource/dpvweb" - }, - { - "@id": "https://registry.bio2kg.org/resource/transportdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/cog" - }, - { - "@id": "https://registry.bio2kg.org/resource/aaindex" - }, - { - "@id": "https://registry.bio2kg.org/resource/tigrfams" - }, - { - "@id": "https://registry.bio2kg.org/resource/virushostdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/orthodb" - }, - { - "@id": "https://registry.bio2kg.org/resource/fsnp" - }, - { - "@id": "https://registry.bio2kg.org/resource/hgnc" - }, - { - "@id": "https://registry.bio2kg.org/resource/vz" - }, - { - "@id": "https://registry.bio2kg.org/resource/mmdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/pathguide" - }, - { - "@id": "https://registry.bio2kg.org/resource/alfred" - }, - { - "@id": "https://registry.bio2kg.org/resource/ehda" - }, - { - "@id": "https://registry.bio2kg.org/resource/peroxibase" - }, - { - "@id": "https://registry.bio2kg.org/resource/psi.mi" - }, - { - "@id": "https://registry.bio2kg.org/resource/sep" - }, - { - "@id": "https://registry.bio2kg.org/resource/imgt.primerdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/sgd" - }, - { - "@id": "https://registry.bio2kg.org/resource/beetlebase" - }, - { - "@id": "https://registry.bio2kg.org/resource/ro" - }, - { - "@id": "https://registry.bio2kg.org/resource/pathwaycommons" - }, - { - "@id": "https://registry.bio2kg.org/resource/lipidmaps" - }, - { - "@id": "https://registry.bio2kg.org/resource/neurondb" - }, - { - "@id": "https://registry.bio2kg.org/resource/pdbligand" - }, - { - "@id": "https://registry.bio2kg.org/resource/chembank" - }, - { - "@id": "https://registry.bio2kg.org/resource/tied" - }, - { - "@id": "https://registry.bio2kg.org/resource/string" - }, - { - "@id": "https://registry.bio2kg.org/resource/hdr" - }, - { - "@id": "https://registry.bio2kg.org/resource/p3db" - }, - { - "@id": "https://registry.bio2kg.org/resource/come" - }, - { - "@id": "https://registry.bio2kg.org/resource/wbphenotype" - }, - { - "@id": "https://registry.bio2kg.org/resource/prodom" - }, - { - "@id": "https://registry.bio2kg.org/resource/hprd" - }, - { - "@id": "https://registry.bio2kg.org/resource/wbbt" - }, - { - "@id": "https://registry.bio2kg.org/resource/propreo" - }, - { - "@id": "https://registry.bio2kg.org/resource/pmap.cutdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/vhog" - }, - { - "@id": "https://registry.bio2kg.org/resource/ensembl.plant" - }, - { - "@id": "https://registry.bio2kg.org/resource/ligandexpo" - }, - { - "@id": "https://registry.bio2kg.org/resource/obi" - }, - { - "@id": "https://registry.bio2kg.org/resource/doi" - }, - { - "@id": "https://registry.bio2kg.org/resource/modeldb" - }, - { - "@id": "https://registry.bio2kg.org/resource/cgnc" - }, - { - "@id": "https://registry.bio2kg.org/resource/pw" - }, - { - "@id": "https://registry.bio2kg.org/resource/mao" - }, - { - "@id": "https://registry.bio2kg.org/resource/uniparc" - }, - { - "@id": "https://registry.bio2kg.org/resource/tair.locus" - }, - { - "@id": "https://registry.bio2kg.org/resource/sitex" - }, - { - "@id": "https://registry.bio2kg.org/resource/swissmodel" - }, - { - "@id": "https://registry.bio2kg.org/resource/rvd" - }, - { - "@id": "https://registry.bio2kg.org/resource/genefarm" - }, - { - "@id": "https://registry.bio2kg.org/resource/spike" - }, - { - "@id": "https://registry.bio2kg.org/resource/biomodels" - }, - { - "@id": "https://registry.bio2kg.org/resource/metnetdb" - }, - { - "@id": "https://registry.bio2kg.org/resource/mirbase" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PharmGKB Drug" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/trnadbce" + "@id": "http://edamontology.org/data_2652" }, { - "@id": "https://registry.bio2kg.org/resource/jcm" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug" }, { - "@id": "https://registry.bio2kg.org/resource/scpd" + "@id": "http://www.wikidata.org/entity/P7001" }, { - "@id": "https://registry.bio2kg.org/resource/tgd" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.drug" }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.reaction" + "@id": "https://registry.identifiers.org/registry/pharmgkb.drug" }, { - "@id": "https://registry.bio2kg.org/resource/intact" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DRUG" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/omim" + "@value": "pharmacogenomics" }, { - "@id": "https://registry.bio2kg.org/resource/ydpm" - }, + "@value": "drug" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pharmgkb.org/" + }, + "https://bioregistry.io/schema/#0000005": "PA448710", + "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/drug/$1", + "https://bioregistry.io/schema/#0000008": "^PA\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/drug/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pharmgkb.org/drug/PA448710" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pharmgkb.drug" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDBANK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0002-8912-5699", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jeffrey Wong" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jeffvin.wong@utoronto.ca" + } + }, + { + "@id": "https://bioregistry.io/registry/intact.molecule", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "IntAct Molecule" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/chemidplus" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact.molecule" }, { - "@id": "https://registry.bio2kg.org/resource/flybase" + "@id": "https://bioregistry.io/metaregistry/biocontext/INTACT.MOLECULE" }, { - "@id": "https://registry.bio2kg.org/resource/maizegdb" - }, + "@id": "https://registry.identifiers.org/registry/intact.molecule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/intact/" + }, + "https://bioregistry.io/schema/#0000005": "EBI-366083", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/search?query=$1", + "https://bioregistry.io/schema/#0000008": "^EBI\\-[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/search?query=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/intact/search?query=EBI-366083" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "intact.molecule" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dragondb.allele", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.bio2kg.org/resource/flymine" + "@id": "https://bioregistry.io/registry/dragondb" }, { - "@id": "https://registry.bio2kg.org/resource/paleodb" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DragonDB Allele" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/glycomapsdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele" }, { - "@id": "https://registry.bio2kg.org/resource/geneloc" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE" }, { - "@id": "https://registry.bio2kg.org/resource/dip" - }, + "@id": "https://registry.identifiers.org/registry/dragondb.allele" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.antirrhinum.net/" + }, + "https://bioregistry.io/schema/#0000005": "cho", + "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.allele:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=cho&class=Allele" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dragondb.allele" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.35e1c3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pepbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMG.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c9psgb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ydpm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yeast Deletion and the Mitochondrial Proteomics Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/disprot" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ydpm" }, { - "@id": "https://registry.bio2kg.org/resource/gold" + "@id": "https://registry.bio2kg.org/resource/ydpm" }, { - "@id": "https://registry.bio2kg.org/resource/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext/YDPM" }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.substance" - }, + "@id": "https://registry.identifiers.org/registry/ydpm" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www-deletion.stanford.edu/YDPM/" + }, + "https://bioregistry.io/schema/#0000005": "YAL001C", + "https://bioregistry.io/schema/#0000006": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1", + "https://bioregistry.io/schema/#0000008": "^Y[A-Z]{2}\\d+[CW]$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=YAL001C" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ydpm" + } + }, + { + "@id": "http://www.ontobee.org/ontology/GENEPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cellimage", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/c4o", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/c4o" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Citation Counting and Context Characterisation Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.beb855" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sparontologies.net/ontologies/c4o" + }, + "https://bioregistry.io/schema/#0000005": "InTextReferencePointer", + "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/c4o/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/c4o/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/spar/c4o/InTextReferencePointer" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "c4o" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ADW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ligandexpo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ligand Expo" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/rnamods" + "@id": "https://registry.identifiers.org/registry/ligandexpo" }, { - "@id": "https://registry.bio2kg.org/resource/emap.ontology" + "@id": "https://fairsharing.org/FAIRsharing.2ma4gq" }, { - "@id": "https://registry.bio2kg.org/resource/bto" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo" }, { - "@id": "https://registry.bio2kg.org/resource/spdo" + "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDEXPO" }, { - "@id": "https://registry.bio2kg.org/resource/biocyc" - }, + "@id": "https://registry.bio2kg.org/resource/ligandexpo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/isfinder" + "@value": "chemical" }, { - "@id": "https://registry.bio2kg.org/resource/merops" + "@value": "life science" }, { - "@id": "https://registry.bio2kg.org/resource/pr" + "@value": "protein" }, { - "@id": "https://registry.bio2kg.org/resource/ncit" + "@value": "interaction" }, { - "@id": "https://registry.bio2kg.org/resource/citexplore" + "@value": "structure" }, { - "@id": "https://registry.bio2kg.org/resource/ird.segment" - }, + "@value": "nucleic acid" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ligand-depot.rutgers.edu/index.html" + }, + "https://bioregistry.io/schema/#0000005": "ABC", + "https://bioregistry.io/schema/#0000006": "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid", + "https://bioregistry.io/schema/#0000008": "^(\\w){3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6686-5475" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ligandexpo:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=ABC&operation=ccid" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ligandexpo" + } + }, + { + "@id": "https://bioregistry.io/registry/peco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/Planteome/plant-experimental-conditions-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Plant Experimental Conditions Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa" + "@id": "http://agroportal.lirmm.fr/ontologies/PECO" }, { - "@id": "https://registry.bio2kg.org/resource/redfly" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco" }, { - "@id": "https://registry.bio2kg.org/resource/bykdb" + "@id": "https://fairsharing.org/FAIRsharing.6yNXYK" }, { - "@id": "https://registry.bio2kg.org/resource/genbank" + "@id": "https://bioregistry.io/metaregistry/biocontext/PECO" }, { - "@id": "https://registry.bio2kg.org/resource/ncbigene" + "@id": "http://aber-owl.net/ontology/PECO" }, { - "@id": "https://registry.bio2kg.org/resource/yrc" + "@id": "https://bioportal.bioontology.org/ontologies/PECO" }, { - "@id": "https://registry.bio2kg.org/resource/genage" + "@id": "http://www.ontobee.org/ontology/PECO" }, { - "@id": "https://registry.bio2kg.org/resource/greengenes" - }, + "@id": "https://www.obofoundry.org/ontology/peco" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/imgthla" + "@value": "botany" }, { - "@id": "https://registry.bio2kg.org/resource/imex" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/pmc" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://planteome.org/" + }, + "https://bioregistry.io/schema/#0000005": "0007114", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PECO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/peco.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://registry.bio2kg.org/resource/wikipathways" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://registry.bio2kg.org/resource/bindingdb" - }, + "@id": "https://bioregistry.io/registry/mco" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1005-8383" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PECO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PECO_0007114" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "peco" + } + }, + { + "@id": "https://orcid.org/0000-0002-5714-991X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chris Stoeckert" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "stoeckrt@pcbi.upenn.edu" + } + }, + { + "@id": "http://aber-owl.net/ontology/ECSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2057", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7fnx38", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100014113", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/iceo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ontoice/ICEO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Integrative and Conjugative Element Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/genecards" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo" }, { - "@id": "https://registry.bio2kg.org/resource/genetree" + "@id": "http://aber-owl.net/ontology/ICEO" }, { - "@id": "https://registry.bio2kg.org/resource/bactibase" + "@id": "http://www.ontobee.org/ontology/ICEO" }, { - "@id": "https://registry.bio2kg.org/resource/nmr" + "@id": "https://bioportal.bioontology.org/ontologies/ICEO" }, { - "@id": "https://registry.bio2kg.org/resource/homologene" - }, + "@id": "https://www.obofoundry.org/ontology/iceo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/sgn" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/mampol" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/ontoice/ICEO" + }, + "https://bioregistry.io/schema/#0000005": "0000712_1", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ICEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}(_\\d)?$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/iceo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3781-6962" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ICEO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ICEO_0000712_1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iceo" + } + }, + { + "@id": "https://bioregistry.io/registry/biotools", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "http://github.com/bio-tools/biotoolsregistry/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioTools" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/mesh" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools" }, { - "@id": "https://registry.bio2kg.org/resource/viperdb" + "@id": "https://fairsharing.org/FAIRsharing.63520c" }, { - "@id": "https://registry.bio2kg.org/resource/lgicdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOTOOLS" }, { - "@id": "https://registry.bio2kg.org/resource/smart" + "@id": "https://www.re3data.org/repository/r3d100013668" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.pathway" - }, + "@id": "https://registry.identifiers.org/registry/biotools" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/fbdv" + "@value": "biomedical science" }, { - "@id": "https://registry.bio2kg.org/resource/pdbj" + "@value": "bioinformatics" }, { - "@id": "https://registry.bio2kg.org/resource/4dxpress" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bio.tools/" + }, + "https://bioregistry.io/schema/#0000005": "bioregistry", + "https://bioregistry.io/schema/#0000006": "https://bio.tools/$1", + "https://bioregistry.io/schema/#0000008": "^[-A-Za-z0-9\\_]*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9727-2544" + }, + "https://bioregistry.io/schema/#0000024": "https://bio.tools/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bio.tools/bioregistry" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biotools" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/obi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/minid.test", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MINID Test" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/minid.test" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fair-research.org" + }, + "https://bioregistry.io/schema/#0000005": "3SBPLMKKVEVR", + "https://bioregistry.io/schema/#0000006": "https://hdl.handle.net/hdl:20.500.12633/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://hdl.handle.net/hdl:20.500.12633/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://hdl.handle.net/hdl:20.500.12633/3SBPLMKKVEVR" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "minid.test" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EPSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.v0hbjs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PORO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/eco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/sep", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sample processing and separation techniques" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/subtilist" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEP" }, { - "@id": "https://registry.bio2kg.org/resource/cco" + "@id": "https://bioportal.bioontology.org/ontologies/SEP" }, { - "@id": "https://registry.bio2kg.org/resource/uniprot.kw" + "@id": "http://www.ontobee.org/ontology/SEP" }, { - "@id": "https://registry.bio2kg.org/resource/asrp" + "@id": "http://aber-owl.net/ontology/SEP" }, { - "@id": "https://registry.bio2kg.org/resource/dbest" + "@id": "https://www.obofoundry.org/ontology/sep" }, { - "@id": "https://registry.bio2kg.org/resource/dailymed" - }, + "@id": "https://registry.bio2kg.org/resource/sep" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/pazar" + "@value": "obo" }, { - "@id": "https://registry.bio2kg.org/resource/aao" + "@value": "protein" }, { - "@id": "https://registry.bio2kg.org/resource/tuberculist" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://psidev.info/sepcv" + }, + "https://bioregistry.io/schema/#0000005": "00073", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SEP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5,6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/sep.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N7c8596a0bbc447a698650bd50784b249" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SEP_", + "https://bioregistry.io/schema/#0000029": { + "@value": "sep" + } + }, + { + "@id": "_:N7c8596a0bbc447a698650bd50784b249", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SEP developers via the PSI and MSI mailing lists" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "psidev-gps-dev@lists.sourceforge.net" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3kcgmr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011198", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/pubchem.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://registry.bio2kg.org/resource/mpi" + "@id": "https://bioregistry.io/registry/pubchem" }, { - "@id": "https://registry.bio2kg.org/resource/mgiid" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubChem CID" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/irefweb" + "@id": "https://registry.identifiers.org/registry/pubchem.compound" }, { - "@id": "https://registry.bio2kg.org/resource/snomedct" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID" }, { - "@id": "https://registry.bio2kg.org/resource/antweb" + "@id": "http://edamontology.org/data_2639" }, { - "@id": "https://registry.bio2kg.org/resource/omia" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem" }, { - "@id": "https://registry.bio2kg.org/resource/cryptodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND" }, { - "@id": "https://registry.bio2kg.org/resource/nucleardb" + "@id": "https://www.re3data.org/repository/r3d100010129" }, { - "@id": "https://registry.bio2kg.org/resource/myco.lepra" + "@id": "https://registry.bio2kg.org/resource/pubchem.compound" }, { - "@id": "https://registry.bio2kg.org/resource/biomagresbank" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound" }, { - "@id": "https://registry.bio2kg.org/resource/mint" + "@id": "https://semanticscience.org/resource/CHEMINF_000140" }, { - "@id": "https://registry.bio2kg.org/resource/stitch" + "@id": "http://www.wikidata.org/entity/P662" }, { - "@id": "https://registry.bio2kg.org/resource/ddanat" + "@id": "https://fairsharing.org/FAIRsharing.qt3w7z" }, { - "@id": "https://registry.bio2kg.org/resource/fao" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/rhea" + "@value": "epidemiology" }, { - "@id": "https://registry.bio2kg.org/resource/smpdb" + "@value": "chemical" }, { - "@id": "https://registry.bio2kg.org/resource/tcdb" + "@value": "virology" }, { - "@id": "https://registry.bio2kg.org/resource/myco.marinum" + "@value": "metabolite" }, { - "@id": "https://registry.bio2kg.org/resource/img.taxon" + "@value": "structure" }, { - "@id": "https://registry.bio2kg.org/resource/snap" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "100101", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/compound/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://registry.bio2kg.org/resource/biosystems" + "@value": "PUBCHEM_CID" }, { - "@id": "https://registry.bio2kg.org/resource/worfdb" + "@value": "pubchem_id" }, { - "@id": "https://registry.bio2kg.org/resource/jws" + "@value": "CID" }, { - "@id": "https://registry.bio2kg.org/resource/myco.smeg" + "@value": "PubChem_Compound_CID" }, { - "@id": "https://registry.bio2kg.org/resource/loqate" + "@value": "DSSTox_CID" }, { - "@id": "https://registry.bio2kg.org/resource/astd" - }, + "@value": "Pubchem" + } + ], + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/compound/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/compound/100101" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pubchem.compound" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/shibase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/OGG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://orcid.org/0000-0002-9575-0255", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Brendan MacLean" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "brendanx@uw.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/hc.npn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Health Canada Natural Product Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/search-rechercheReq.do?lang=eng" + }, + "https://bioregistry.io/schema/#0000005": "18125", + "https://bioregistry.io/schema/#0000006": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=18125" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hc.npn" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/huge", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/gendr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/MOSAIC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/mcc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Line Ontology [derivative]" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioportal.bioontology.org/ontologies/MCCL" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.molecularconnections.com" + }, + "https://bioregistry.io/schema/#0000005": "ThoracicArtery", + "https://bioregistry.io/schema/#0000006": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N4cf661d3a80e4bc29af2d32f1413fc73" + }, + "https://bioregistry.io/schema/#0000024": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#ThoracicArtery" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mcc" + } + }, + { + "@id": "_:N4cf661d3a80e4bc29af2d32f1413fc73", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Usha Mahadevan" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "usha@molecularconnections.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.veg2d6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/tao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Teleost Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/eco" + "@id": "https://www.obofoundry.org/ontology/tao" }, { - "@id": "https://registry.bio2kg.org/resource/gpcrdb" + "@id": "http://aber-owl.net/ontology/TAO" }, { - "@id": "https://registry.bio2kg.org/resource/lipidbank" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAO" }, { - "@id": "https://registry.bio2kg.org/resource/rgap" + "@id": "https://bioportal.bioontology.org/ontologies/TAO" }, { - "@id": "https://registry.bio2kg.org/resource/vbrc" + "@id": "https://registry.bio2kg.org/resource/tao" }, { - "@id": "https://registry.bio2kg.org/resource/uniprot" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/interfil" + "@value": "classification" }, { - "@id": "https://registry.bio2kg.org/resource/doqcs.model" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/vso" + "@value": "anatomy" }, { - "@id": "https://registry.bio2kg.org/resource/aphidbase" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000086", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/tao.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3162-7490" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "TAO_RETIRED" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "tao" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://edamontology.org/data_2390", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://orcid.org/0000-0001-7604-8041", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "John Kunze" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://registry.bio2kg.org/resource/symptom" + "@value": "jak@ucop.edu" }, { - "@id": "https://registry.bio2kg.org/resource/subtiwiki" - }, + "@value": "jakkbl@gmail.com" + } + ] + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/dg.anv0", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Anvil" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dg.anv0" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://gen3.theanvil.io" + }, + "https://bioregistry.io/schema/#0000005": "00077f1c-c45a-47ba-8e6c-1bf6b6b43fce", + "https://bioregistry.io/schema/#0000006": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/00077f1c-c45a-47ba-8e6c-1bf6b6b43fce" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dg.anv0" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VectorBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DATF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.target", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/neurolex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011294", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "http://aber-owl.net/ontology/EHDAA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mpath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://aber-owl.net/ontology/EDAM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/eggnog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/mfoem", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/jannahastings/emotion-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Emotion Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/ccd" + "@id": "https://bioportal.bioontology.org/ontologies/MFOEM" }, { - "@id": "https://registry.bio2kg.org/resource/do" + "@id": "https://www.obofoundry.org/ontology/mfoem" }, { - "@id": "https://registry.bio2kg.org/resource/vo" + "@id": "http://aber-owl.net/ontology/MFOEM" }, { - "@id": "https://registry.bio2kg.org/resource/ccds" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem" }, { - "@id": "https://registry.bio2kg.org/resource/dictybase" + "@id": "http://www.ontobee.org/ontology/MFOEM" }, { - "@id": "https://registry.bio2kg.org/resource/aceview.worm" + "@id": "https://fairsharing.org/FAIRsharing.dx30m8" }, { - "@id": "https://registry.bio2kg.org/resource/pdbsum" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOEM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/nbrc" + "@value": "biomedical science" }, { - "@id": "https://registry.bio2kg.org/resource/isbn" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/plasmodb" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/jannahastings/emotion-ontology" + }, + "https://bioregistry.io/schema/#0000005": "000204", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFOEM_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mfoem.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3469-4923" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFOEM_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MFOEM_000204" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mfoem" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000411", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "https://bioregistry.io/registry/dbmhc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of human Major Histocompatibility Complex" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/gv/mhc/" + }, + "https://bioregistry.io/schema/#0000005": "48439", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/cellosaurus" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dbmhc" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/LBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ac", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Activity Streams" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/pirsf" + "@value": "semantic web" }, { - "@id": "https://registry.bio2kg.org/resource/pubmed" - }, + "@value": "social media" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.w3.org/ns/activitystreams" + }, + "https://bioregistry.io/schema/#0000005": "Add", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/activitystreams#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/activitystreams#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/ns/activitystreams#Add" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ac" + } + }, + { + "@id": "https://registry.identifiers.org/registry/drsc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/omrse", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/mcwdsi/OMRSE" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for Modeling and Representation of Social Entities" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/imotdb" + "@id": "https://bioportal.bioontology.org/ontologies/OMRSE" }, { - "@id": "https://registry.bio2kg.org/resource/brenda" + "@id": "https://fairsharing.org/FAIRsharing.z0p37e" }, { - "@id": "https://registry.bio2kg.org/resource/phylomedb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse" }, { - "@id": "https://registry.bio2kg.org/resource/imr" + "@id": "http://aber-owl.net/ontology/OMRSE" }, { - "@id": "https://registry.bio2kg.org/resource/tto" + "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.fungi" + "@id": "http://www.ontobee.org/ontology/OMRSE" }, { - "@id": "https://registry.bio2kg.org/resource/protclustdb" - }, + "@id": "https://www.obofoundry.org/ontology/omrse" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.bio2kg.org/resource/refseq" + "@value": "social science" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/insdc" + "@value": "biomedical science" }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.ec" + "@value": "obo" }, { - "@id": "https://registry.bio2kg.org/resource/sgd.pathways" + "@value": "health science" }, { - "@id": "https://registry.bio2kg.org/resource/shibase" - }, + "@value": "demographics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview" + }, + "https://bioregistry.io/schema/#0000005": "00000022", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMRSE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/omrse.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/labo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9881-1017" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMRSE_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OMRSE_00000022" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "omrse" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ECTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ecyano.rule", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iceberg.family", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-5320-2023", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Maciej Antczak" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Maciej.Antczak@cs.put.poznan.pl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/subtilist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cameo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandbox", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.ENZYME", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zsgmvd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OMA.GRP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/miriam", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://registry.bio2kg.org/resource/teddy" + "@id": "https://registry.identifiers.org/registry/hp" }, { - "@id": "https://registry.bio2kg.org/resource/peptideatlas" + "@id": "https://registry.identifiers.org/registry/mmp.db" }, { - "@id": "https://registry.bio2kg.org/resource/cl" + "@id": "https://registry.identifiers.org/registry/medgen" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.disease" + "@id": "https://registry.identifiers.org/registry/civic.gid" }, { - "@id": "https://registry.bio2kg.org/resource/pmap.substratedb" + "@id": "https://registry.identifiers.org/registry/sider.drug" }, { - "@id": "https://registry.bio2kg.org/resource/unists" + "@id": "https://registry.identifiers.org/registry/hpm.protein" }, { - "@id": "https://registry.bio2kg.org/resource/virmirdb" + "@id": "https://registry.identifiers.org/registry/biominder" }, { - "@id": "https://registry.bio2kg.org/resource/genedb" + "@id": "https://registry.identifiers.org/registry/kegg.module" }, { - "@id": "https://registry.bio2kg.org/resource/mtbd" + "@id": "https://registry.identifiers.org/registry/hgnc.symbol" }, { - "@id": "https://registry.bio2kg.org/resource/t3db" + "@id": "https://registry.identifiers.org/registry/bigg.model" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.brite" + "@id": "https://registry.identifiers.org/registry/gxa.gene" }, { - "@id": "https://registry.bio2kg.org/resource/genatlas" + "@id": "https://registry.identifiers.org/registry/pid.pathway" }, { - "@id": "https://registry.bio2kg.org/resource/doqcs.pathway" + "@id": "https://registry.identifiers.org/registry/kegg.drug" }, { - "@id": "https://registry.bio2kg.org/resource/taxrank" + "@id": "https://registry.identifiers.org/registry/gmd.ref" }, { - "@id": "https://registry.bio2kg.org/resource/otl" + "@id": "https://registry.identifiers.org/registry/sgn" }, { - "@id": "https://registry.bio2kg.org/resource/nasc" + "@id": "https://registry.identifiers.org/registry/pgs" }, { - "@id": "https://registry.bio2kg.org/resource/pmdb" + "@id": "https://registry.identifiers.org/registry/piroplasma" }, { - "@id": "https://registry.bio2kg.org/resource/orphanet" + "@id": "https://registry.identifiers.org/registry/gold" }, { - "@id": "https://registry.bio2kg.org/resource/vita" + "@id": "https://registry.identifiers.org/registry/hssp" }, { - "@id": "https://registry.bio2kg.org/resource/ordb" + "@id": "https://registry.identifiers.org/registry/fma" }, { - "@id": "https://registry.bio2kg.org/resource/pto" + "@id": "https://registry.identifiers.org/registry/funcbase.human" }, { - "@id": "https://registry.bio2kg.org/resource/microsporidia" + "@id": "https://registry.identifiers.org/registry/paxdb.organism" }, { - "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic" + "@id": "https://registry.identifiers.org/registry/dandi" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.drug" + "@id": "https://registry.identifiers.org/registry/dlxc" }, { - "@id": "https://registry.bio2kg.org/resource/spbase" + "@id": "https://registry.identifiers.org/registry/dpv" }, { - "@id": "https://registry.bio2kg.org/resource/eugenes" + "@id": "https://registry.identifiers.org/registry/morpheus" }, { - "@id": "https://registry.bio2kg.org/resource/grin" + "@id": "https://registry.identifiers.org/registry/scretf" }, { - "@id": "https://registry.bio2kg.org/resource/allergome" + "@id": "https://registry.identifiers.org/registry/ec-code" }, { - "@id": "https://registry.bio2kg.org/resource/gendr" + "@id": "https://registry.identifiers.org/registry/ecyano.entity" }, { - "@id": "https://registry.bio2kg.org/resource/cdd" + "@id": "https://registry.identifiers.org/registry/biomodels.teddy" }, { - "@id": "https://registry.bio2kg.org/resource/mfo" + "@id": "https://registry.identifiers.org/registry/img.gene" }, { - "@id": "https://registry.bio2kg.org/resource/jcsd" + "@id": "https://registry.identifiers.org/registry/sugarbind" }, { - "@id": "https://registry.bio2kg.org/resource/wormbase" + "@id": "https://registry.identifiers.org/registry/hogenom" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.reaction" + "@id": "https://registry.identifiers.org/registry/otl" }, { - "@id": "https://registry.bio2kg.org/resource/4dn" + "@id": "https://registry.identifiers.org/registry/amoebadb" }, { - "@id": "https://registry.bio2kg.org/resource/pid" + "@id": "https://registry.identifiers.org/registry/oid" }, { - "@id": "https://registry.bio2kg.org/resource/niaest" + "@id": "https://registry.identifiers.org/registry/ardb" }, { - "@id": "https://registry.bio2kg.org/resource/ena" + "@id": "https://registry.identifiers.org/registry/crisprdb" }, { - "@id": "https://registry.bio2kg.org/resource/giardiadb" + "@id": "https://registry.identifiers.org/registry/mi" }, { - "@id": "https://registry.bio2kg.org/resource/grsdb" + "@id": "https://registry.identifiers.org/registry/mmp.ref" }, { - "@id": "https://registry.bio2kg.org/resource/ndfrt" + "@id": "https://registry.identifiers.org/registry/broad" }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.bioassay" + "@id": "https://registry.identifiers.org/registry/pmap.substratedb" }, { - "@id": "https://registry.bio2kg.org/resource/scop" + "@id": "https://registry.identifiers.org/registry/pubmed" }, { - "@id": "https://registry.bio2kg.org/resource/img.gene" + "@id": "https://registry.identifiers.org/registry/clo" }, { - "@id": "https://registry.bio2kg.org/resource/chemdb" + "@id": "https://registry.identifiers.org/registry/seed" }, { - "@id": "https://registry.bio2kg.org/resource/clo" + "@id": "https://registry.identifiers.org/registry/opm" }, { - "@id": "https://registry.bio2kg.org/resource/mirbase.mature" + "@id": "https://registry.identifiers.org/registry/metanetx.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/hogenom" + "@id": "https://registry.identifiers.org/registry/cellosaurus" }, { - "@id": "https://registry.bio2kg.org/resource/dbprobe" + "@id": "https://registry.identifiers.org/registry/corum" }, { - "@id": "https://registry.bio2kg.org/resource/sao" + "@id": "https://registry.identifiers.org/registry/aop.relationships" }, { - "@id": "https://registry.bio2kg.org/resource/pibase" + "@id": "https://registry.identifiers.org/registry/cellrepo" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene" + "@id": "https://registry.identifiers.org/registry/myco.smeg" }, { - "@id": "https://registry.bio2kg.org/resource/fma" + "@id": "https://registry.identifiers.org/registry/agricola" }, { - "@id": "https://registry.bio2kg.org/resource/unigene" + "@id": "https://registry.identifiers.org/registry/ena.embl" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.protist" + "@id": "https://registry.identifiers.org/registry/idot" }, { - "@id": "https://registry.bio2kg.org/resource/signaling-gateway" + "@id": "https://registry.identifiers.org/registry/bgee.family" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.orthology" + "@id": "https://registry.identifiers.org/registry/repeatsdb.protein" }, { - "@id": "https://registry.bio2kg.org/resource/tao" + "@id": "https://registry.identifiers.org/registry/civic.eid" }, { - "@id": "https://registry.bio2kg.org/resource/agsd" + "@id": "https://registry.identifiers.org/registry/conoserver" }, { - "@id": "https://registry.bio2kg.org/resource/pride" + "@id": "https://registry.identifiers.org/registry/protonet.cluster" }, { - "@id": "https://registry.bio2kg.org/resource/pathoplant" + "@id": "https://registry.identifiers.org/registry/umbbd.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/cutg" + "@id": "https://registry.identifiers.org/registry/bbtp" }, { - "@id": "https://registry.bio2kg.org/resource/hmdb" + "@id": "https://registry.identifiers.org/registry/togovar" }, { - "@id": "https://registry.bio2kg.org/resource/fbbi" + "@id": "https://registry.identifiers.org/registry/yid" }, { - "@id": "https://registry.bio2kg.org/resource/mimodb" + "@id": "https://registry.identifiers.org/registry/merops.family" }, { - "@id": "https://registry.bio2kg.org/resource/tccd" + "@id": "https://registry.identifiers.org/registry/jws" }, { - "@id": "https://registry.bio2kg.org/resource/flybase.est" + "@id": "https://registry.identifiers.org/registry/pharmgkb.disease" }, { - "@id": "https://registry.bio2kg.org/resource/rouge" + "@id": "https://registry.identifiers.org/registry/storedb" }, { - "@id": "https://registry.bio2kg.org/resource/macie" + "@id": "https://registry.identifiers.org/registry/umls" }, { - "@id": "https://registry.bio2kg.org/resource/vt" + "@id": "https://registry.identifiers.org/registry/cosmic" }, { - "@id": "https://registry.bio2kg.org/resource/tred" + "@id": "https://registry.identifiers.org/registry/mamo" }, { - "@id": "https://registry.bio2kg.org/resource/pfam" + "@id": "https://registry.identifiers.org/registry/doqcs.model" }, { - "@id": "https://registry.bio2kg.org/resource/ma" + "@id": "https://registry.identifiers.org/registry/pirsf" }, { - "@id": "https://registry.bio2kg.org/resource/ised" + "@id": "https://registry.identifiers.org/registry/stitch" }, { - "@id": "https://registry.bio2kg.org/resource/gramene.po" + "@id": "https://registry.identifiers.org/registry/proteomicsdb.peptide" }, { - "@id": "https://registry.bio2kg.org/resource/cst" + "@id": "https://registry.identifiers.org/registry/ma" }, { - "@id": "https://registry.bio2kg.org/resource/taxonomy" + "@id": "https://registry.identifiers.org/registry/wikigenes" }, { - "@id": "https://registry.bio2kg.org/resource/hpmr" + "@id": "https://registry.identifiers.org/registry/lrg" }, { - "@id": "https://registry.bio2kg.org/resource/zea" + "@id": "https://registry.identifiers.org/registry/noncodev4.gene" }, { - "@id": "https://registry.bio2kg.org/resource/jcvi.genprop" + "@id": "https://registry.identifiers.org/registry/asap" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.metagenome" + "@id": "https://registry.identifiers.org/registry/nlfff" }, { - "@id": "https://registry.bio2kg.org/resource/rex" + "@id": "https://registry.identifiers.org/registry/stap" }, { - "@id": "https://registry.bio2kg.org/resource/bionumbers" + "@id": "https://registry.identifiers.org/registry/seed.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/chickenqtldb" + "@id": "https://registry.identifiers.org/registry/myco.tuber" }, { - "@id": "https://registry.bio2kg.org/resource/ncbi.protein" + "@id": "https://registry.identifiers.org/registry/pato" }, { - "@id": "https://registry.bio2kg.org/resource/cattleqtldb" + "@id": "https://registry.identifiers.org/registry/biocyc" }, { - "@id": "https://registry.bio2kg.org/resource/treefam" + "@id": "https://registry.identifiers.org/registry/cazy" }, { - "@id": "https://registry.bio2kg.org/resource/rapdb" + "@id": "https://registry.identifiers.org/registry/biomodels.db" }, { - "@id": "https://registry.bio2kg.org/resource/geneannot" + "@id": "https://registry.identifiers.org/registry/biotools" }, { - "@id": "https://registry.bio2kg.org/resource/apd" + "@id": "https://registry.identifiers.org/registry/intact" }, { - "@id": "https://registry.bio2kg.org/resource/iuphar.family" + "@id": "https://registry.identifiers.org/registry/glyconavi" }, { - "@id": "https://registry.bio2kg.org/resource/sdap" + "@id": "https://registry.identifiers.org/registry/massive" }, { - "@id": "https://registry.bio2kg.org/resource/vbase2" + "@id": "https://registry.identifiers.org/registry/funderregistry" }, { - "@id": "https://registry.bio2kg.org/resource/kisao" + "@id": "https://registry.identifiers.org/registry/worms" }, { - "@id": "https://registry.bio2kg.org/resource/molmovdb" + "@id": "https://registry.identifiers.org/registry/gmd" }, { - "@id": "https://registry.bio2kg.org/resource/hamap" + "@id": "https://registry.identifiers.org/registry/intact.molecule" }, { - "@id": "https://registry.bio2kg.org/resource/vectorbase" + "@id": "https://registry.identifiers.org/registry/ecyano.rule" }, { - "@id": "https://registry.bio2kg.org/resource/sheepqtldb" + "@id": "https://registry.identifiers.org/registry/niaest" }, { - "@id": "https://registry.bio2kg.org/resource/pombase" + "@id": "https://registry.identifiers.org/registry/genedb" }, { - "@id": "https://registry.bio2kg.org/resource/mycobank" + "@id": "https://registry.identifiers.org/registry/bugbase.expt" }, { - "@id": "https://registry.bio2kg.org/resource/nmpdr" + "@id": "https://registry.identifiers.org/registry/miriam.resource" }, { - "@id": "https://registry.bio2kg.org/resource/sbo" + "@id": "https://registry.identifiers.org/registry/affy.probeset" }, { - "@id": "https://registry.bio2kg.org/resource/clinicaltrials" + "@id": "https://registry.identifiers.org/registry/isni" }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria" + "@id": "https://registry.identifiers.org/registry/bitbucket" }, { - "@id": "https://registry.bio2kg.org/resource/fbcv" + "@id": "https://registry.identifiers.org/registry/napp" }, { - "@id": "https://registry.bio2kg.org/resource/miriam.resource" + "@id": "https://registry.identifiers.org/registry/iuphar.family" }, { - "@id": "https://registry.bio2kg.org/resource/pharmvar" + "@id": "https://registry.identifiers.org/registry/biosystems" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.genome" + "@id": "https://registry.identifiers.org/registry/orphanet" }, { - "@id": "https://registry.bio2kg.org/resource/archdb" + "@id": "https://registry.identifiers.org/registry/cst" }, { - "@id": "https://registry.bio2kg.org/resource/bind" + "@id": "https://registry.identifiers.org/registry/uo" }, { - "@id": "https://registry.bio2kg.org/resource/neurolex" + "@id": "https://registry.identifiers.org/registry/clb" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.compound" + "@id": "https://registry.identifiers.org/registry/kaggle" }, { - "@id": "https://registry.bio2kg.org/resource/ricecyc" + "@id": "https://registry.identifiers.org/registry/dg.anv0" }, { - "@id": "https://registry.bio2kg.org/resource/swo" + "@id": "https://registry.identifiers.org/registry/classyfire" }, { - "@id": "https://registry.bio2kg.org/resource/world2dpage" + "@id": "https://registry.identifiers.org/registry/datanator.gene" }, { - "@id": "https://registry.bio2kg.org/resource/ehdaa" + "@id": "https://registry.identifiers.org/registry/bindingdb" }, { - "@id": "https://registry.bio2kg.org/resource/dbd" + "@id": "https://registry.identifiers.org/registry/cog" }, { - "@id": "https://registry.bio2kg.org/resource/uo" + "@id": "https://registry.identifiers.org/registry/ega.dataset" }, { - "@id": "https://registry.bio2kg.org/resource/mpath" + "@id": "https://registry.identifiers.org/registry/interpro" }, { - "@id": "https://registry.bio2kg.org/resource/unipathway" + "@id": "https://registry.identifiers.org/registry/pride.project" }, { - "@id": "https://registry.bio2kg.org/resource/icd" + "@id": "https://registry.identifiers.org/registry/charprot" }, { - "@id": "https://registry.bio2kg.org/resource/rnajunction" + "@id": "https://registry.identifiers.org/registry/depod" }, { - "@id": "https://registry.bio2kg.org/resource/cgd" + "@id": "https://registry.identifiers.org/registry/snomedct" }, { - "@id": "https://registry.bio2kg.org/resource/evoc" + "@id": "https://registry.identifiers.org/registry/civic.aid" }, { - "@id": "https://registry.bio2kg.org/resource/roleo" + "@id": "https://registry.identifiers.org/registry/jaxmice" }, { - "@id": "https://registry.bio2kg.org/resource/ratmap" + "@id": "https://registry.identifiers.org/registry/metanetx.compartment" }, { - "@id": "https://registry.bio2kg.org/resource/gendis" + "@id": "https://registry.identifiers.org/registry/omit" }, { - "@id": "https://registry.bio2kg.org/resource/arxiv" + "@id": "https://registry.identifiers.org/registry/genpept" }, { - "@id": "https://registry.bio2kg.org/resource/door" + "@id": "https://registry.identifiers.org/registry/peptideatlas" }, { - "@id": "https://registry.bio2kg.org/resource/dbsnp" + "@id": "https://registry.identifiers.org/registry/tissuelist" }, { - "@id": "https://registry.bio2kg.org/resource/ivdb" + "@id": "https://registry.identifiers.org/registry/p3db.site" }, { - "@id": "https://registry.bio2kg.org/resource/mgi" + "@id": "https://registry.identifiers.org/registry/metabolights" }, { - "@id": "https://registry.bio2kg.org/resource/ipi" + "@id": "https://registry.identifiers.org/registry/civic.vgid" }, { - "@id": "https://registry.bio2kg.org/resource/protonet.proteincard" + "@id": "https://registry.identifiers.org/registry/mirnest" }, { - "@id": "https://registry.bio2kg.org/resource/tgma" + "@id": "https://registry.identifiers.org/registry/cpc" }, { - "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage" + "@id": "https://registry.identifiers.org/registry/datanator.metabolite" }, { - "@id": "https://registry.bio2kg.org/resource/nembase" + "@id": "https://registry.identifiers.org/registry/imgt.hla" }, { - "@id": "https://registry.bio2kg.org/resource/neuromorpho" + "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule" }, { - "@id": "https://registry.bio2kg.org/resource/amoebadb" + "@id": "https://registry.identifiers.org/registry/refseq.gcf" }, { - "@id": "https://registry.bio2kg.org/resource/po" + "@id": "https://registry.identifiers.org/registry/spdx" }, { - "@id": "https://registry.bio2kg.org/resource/homd.taxon" + "@id": "https://registry.identifiers.org/registry/sciflection" }, { - "@id": "https://registry.bio2kg.org/resource/splicenest" + "@id": "https://registry.identifiers.org/registry/euclinicaltrials" }, { - "@id": "https://registry.bio2kg.org/resource/norine" + "@id": "https://registry.identifiers.org/registry/gateway" }, { - "@id": "https://registry.bio2kg.org/resource/arrayexpress" + "@id": "https://registry.identifiers.org/registry/oryzabase.gene" }, { - "@id": "https://registry.bio2kg.org/resource/gabi" + "@id": "https://registry.identifiers.org/registry/ncbigene" }, { - "@id": "https://registry.bio2kg.org/resource/3dmet" + "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype" }, { - "@id": "https://registry.bio2kg.org/resource/pubchem.compound" + "@id": "https://registry.identifiers.org/registry/bugbase.protocol" }, { - "@id": "https://registry.bio2kg.org/resource/soy" + "@id": "https://registry.identifiers.org/registry/csd" }, { - "@id": "https://registry.bio2kg.org/resource/alzgene" + "@id": "https://registry.identifiers.org/registry/neuromorpho" }, { - "@id": "https://registry.bio2kg.org/resource/biocatalogue" + "@id": "https://registry.identifiers.org/registry/nucleotide" }, { - "@id": "https://registry.bio2kg.org/resource/fix" + "@id": "https://registry.identifiers.org/registry/proglyc" }, { - "@id": "https://registry.bio2kg.org/resource/xenbase" + "@id": "https://registry.identifiers.org/registry/cbioportal" }, { - "@id": "https://registry.bio2kg.org/resource/chembl" + "@id": "https://registry.identifiers.org/registry/ark" }, { - "@id": "https://registry.bio2kg.org/resource/rebase" + "@id": "https://registry.identifiers.org/registry/orcid" }, { - "@id": "https://registry.bio2kg.org/resource/tair.gene" + "@id": "https://registry.identifiers.org/registry/isfinder" }, { - "@id": "https://registry.bio2kg.org/resource/hcv" + "@id": "https://registry.identifiers.org/registry/umbbd.pathway" }, { - "@id": "https://registry.bio2kg.org/resource/biopixie" + "@id": "https://registry.identifiers.org/registry/yetfasco" }, { - "@id": "https://registry.bio2kg.org/resource/superfamily" + "@id": "https://registry.identifiers.org/registry/mmp.fun" }, { - "@id": "https://registry.bio2kg.org/resource/innatedb" + "@id": "https://registry.identifiers.org/registry/nbn" }, { - "@id": "https://registry.bio2kg.org/resource/cazy" + "@id": "https://registry.identifiers.org/registry/iuphar.ligand" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.glycan" + "@id": "https://registry.identifiers.org/registry/cattleqtldb" }, { - "@id": "https://registry.bio2kg.org/resource/mp" + "@id": "https://registry.identifiers.org/registry/ocid" }, { - "@id": "https://registry.bio2kg.org/resource/nextdb" + "@id": "https://registry.identifiers.org/registry/ricenetdb.protein" }, { - "@id": "https://registry.bio2kg.org/resource/cas" + "@id": "https://registry.identifiers.org/registry/compulyeast" }, { - "@id": "https://registry.bio2kg.org/resource/bdgp" + "@id": "https://registry.identifiers.org/registry/hcvdb" }, { - "@id": "https://registry.bio2kg.org/resource/homd.seq" + "@id": "https://registry.identifiers.org/registry/datanator.reaction" }, { - "@id": "https://registry.bio2kg.org/resource/rgd" + "@id": "https://registry.identifiers.org/registry/pride" }, { - "@id": "https://registry.bio2kg.org/resource/pigqtldb" + "@id": "https://registry.identifiers.org/registry/d1id" }, { - "@id": "https://registry.bio2kg.org/resource/zfin" + "@id": "https://registry.identifiers.org/registry/umbbd.enzyme" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.drug" + "@id": "https://registry.identifiers.org/registry/genefarm" }, { - "@id": "https://registry.bio2kg.org/resource/geo" + "@id": "https://registry.identifiers.org/registry/molbase" }, { - "@id": "https://registry.bio2kg.org/resource/panther" + "@id": "https://registry.identifiers.org/registry/bigg.compartment" }, { - "@id": "https://registry.bio2kg.org/resource/ygob" + "@id": "https://registry.identifiers.org/registry/mex" }, { - "@id": "https://registry.bio2kg.org/resource/hovergen" + "@id": "https://registry.identifiers.org/registry/glytoucan" }, { - "@id": "https://registry.bio2kg.org/resource/mipmod" + "@id": "https://registry.identifiers.org/registry/iceberg.element" }, { - "@id": "https://registry.bio2kg.org/resource/fbbt" + "@id": "https://registry.identifiers.org/registry/antweb" }, { - "@id": "https://registry.bio2kg.org/resource/chebi" + "@id": "https://registry.identifiers.org/registry/spp" }, { - "@id": "https://registry.bio2kg.org/resource/huge" + "@id": "https://registry.identifiers.org/registry/lincs.data" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.disease" + "@id": "https://registry.identifiers.org/registry/tair.locus" }, { - "@id": "https://registry.bio2kg.org/resource/pt" + "@id": "https://registry.identifiers.org/registry/neurondb" }, { - "@id": "https://registry.bio2kg.org/resource/matrixdb" + "@id": "https://registry.identifiers.org/registry/coriell" }, { - "@id": "https://registry.bio2kg.org/resource/napp" + "@id": "https://registry.identifiers.org/registry/kegg.compound" }, { - "@id": "https://registry.bio2kg.org/resource/topdb" + "@id": "https://registry.identifiers.org/registry/mzspec" }, { - "@id": "https://registry.bio2kg.org/resource/go" + "@id": "https://registry.identifiers.org/registry/scop" }, { - "@id": "https://registry.bio2kg.org/resource/atc" + "@id": "https://registry.identifiers.org/registry/phosphopoint.kinase" }, { - "@id": "https://registry.bio2kg.org/resource/treebase" + "@id": "https://registry.identifiers.org/registry/insdc" }, { - "@id": "https://registry.bio2kg.org/resource/reactome" + "@id": "https://registry.identifiers.org/registry/emdb" }, { - "@id": "https://registry.bio2kg.org/resource/vega" + "@id": "https://registry.identifiers.org/registry/merops.inhibitor" }, { - "@id": "https://registry.bio2kg.org/resource/prosite" + "@id": "https://registry.identifiers.org/registry/vfb" }, { - "@id": "https://registry.bio2kg.org/resource/hgvbase" + "@id": "https://registry.identifiers.org/registry/psipar" }, { - "@id": "https://registry.bio2kg.org/resource/sstoss" + "@id": "https://registry.identifiers.org/registry/virsirna" }, { - "@id": "https://registry.bio2kg.org/resource/chemspider" + "@id": "https://registry.identifiers.org/registry/eu89h" }, { - "@id": "https://registry.bio2kg.org/resource/biogrid" + "@id": "https://registry.identifiers.org/registry/flowrepository" }, { - "@id": "https://registry.bio2kg.org/resource/drugbank" + "@id": "https://registry.identifiers.org/registry/ensembl" }, { - "@id": "https://registry.bio2kg.org/resource/abs" + "@id": "https://registry.identifiers.org/registry/greengenes" }, { - "@id": "https://registry.bio2kg.org/resource/bold" + "@id": "https://registry.identifiers.org/registry/iceberg.family" }, { - "@id": "https://registry.bio2kg.org/resource/glycomedb" + "@id": "https://registry.identifiers.org/registry/hpscreg" }, { - "@id": "https://registry.bio2kg.org/resource/eropmoscow" + "@id": "https://registry.identifiers.org/registry/dragondb.protein" }, { - "@id": "https://registry.bio2kg.org/resource/rnao" + "@id": "https://registry.identifiers.org/registry/go_ref" }, { - "@id": "https://registry.bio2kg.org/resource/unite" + "@id": "https://registry.identifiers.org/registry/inchikey" }, { - "@id": "https://registry.bio2kg.org/resource/corum" + "@id": "https://registry.identifiers.org/registry/addgene" }, { - "@id": "https://registry.bio2kg.org/resource/zfa" + "@id": "https://registry.identifiers.org/registry/bacmap.map" }, { - "@id": "https://registry.bio2kg.org/resource/bioportal" + "@id": "https://registry.identifiers.org/registry/gro" }, { - "@id": "https://registry.bio2kg.org/resource/goa" + "@id": "https://registry.identifiers.org/registry/allergome" }, { - "@id": "https://registry.bio2kg.org/resource/cmd" + "@id": "https://registry.identifiers.org/registry/dg.f82a1a" }, { - "@id": "https://registry.bio2kg.org/resource/wormpep" + "@id": "https://registry.identifiers.org/registry/doi" }, { - "@id": "https://registry.bio2kg.org/resource/iresite" + "@id": "https://registry.identifiers.org/registry/napdi" }, { - "@id": "https://registry.bio2kg.org/resource/echobase" + "@id": "https://registry.identifiers.org/registry/soybase" }, { - "@id": "https://registry.bio2kg.org/resource/iev" + "@id": "https://registry.identifiers.org/registry/glida.gpcr" }, { - "@id": "https://registry.bio2kg.org/resource/pmp" + "@id": "https://registry.identifiers.org/registry/supfam" }, { - "@id": "https://registry.bio2kg.org/resource/wbls" + "@id": "https://registry.identifiers.org/registry/arraymap" }, { - "@id": "https://registry.bio2kg.org/resource/cgsc" + "@id": "https://registry.identifiers.org/registry/wb" }, { - "@id": "https://registry.bio2kg.org/resource/cath" + "@id": "https://registry.identifiers.org/registry/chemdb" }, { - "@id": "https://registry.bio2kg.org/resource/hssp" + "@id": "https://registry.identifiers.org/registry/envo" }, { - "@id": "https://registry.bio2kg.org/resource/rna_sstrand" + "@id": "https://registry.identifiers.org/registry/atcvet" }, { - "@id": "https://registry.bio2kg.org/resource/noncode" + "@id": "https://registry.identifiers.org/registry/apd" }, { - "@id": "https://registry.bio2kg.org/resource/ecogene" + "@id": "https://registry.identifiers.org/registry/rrid" }, { - "@id": "https://registry.bio2kg.org/resource/pass2" + "@id": "https://registry.identifiers.org/registry/clinvar.record" }, { - "@id": "https://registry.bio2kg.org/resource/yeastract" + "@id": "https://registry.identifiers.org/registry/exac.transcript" }, { - "@id": "https://registry.bio2kg.org/resource/aclame" + "@id": "https://registry.identifiers.org/registry/mmdb" }, { - "@id": "https://registry.bio2kg.org/resource/mirnest" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Prefix Commons" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://registry.bio2kg.org" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "doi" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://registry.bio2kg.org/resource/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4727-9435" - } - }, - { - "@id": "https://registry.identifiers.org/registry/genedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9c1p18", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/oostt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OOSTT/OOSTT" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Organizational Structures of Trauma centers and Trauma systems" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt" + "@id": "https://registry.identifiers.org/registry/topfind" }, { - "@id": "https://fairsharing.org/FAIRsharing.b4sa0w" + "@id": "https://registry.identifiers.org/registry/pigqtldb" }, { - "@id": "https://www.obofoundry.org/ontology/oostt" + "@id": "https://registry.identifiers.org/registry/vmhreaction" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OOSTT" + "@id": "https://registry.identifiers.org/registry/panther.node" }, { - "@id": "http://aber-owl.net/ontology/OOSTT" + "@id": "https://registry.identifiers.org/registry/nmr" }, { - "@id": "http://www.ontobee.org/ontology/OOSTT" + "@id": "https://registry.identifiers.org/registry/ido" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "traumatology" + "@id": "https://registry.identifiers.org/registry/hinv.locus" }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/unipathway.reaction" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OOSTT/OOSTT" - }, - "https://bioregistry.io/schema/#0000005": "00000099", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OOSTT_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/oostt.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1834-3856" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OOSTT_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OOSTT_00000099" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "oostt" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/mosaic", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DataONEorg/sem-prov-ontologies" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MOSAiC Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC" + "@id": "https://registry.identifiers.org/registry/runbiosimulations" }, { - "@id": "http://aber-owl.net/ontology/MOSAIC" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ontologies.dataone.org/MOSAiC.html" - }, - "https://bioregistry.io/schema/#0000005": "00005643", - "https://bioregistry.io/schema/#0000006": "https://purl.dataone.org/odo/MOSAIC_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://ontologies.dataone.org/MOSAiC.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://purl.dataone.org/odo/MOSAIC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://purl.dataone.org/odo/MOSAIC_00005643" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mosaic" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.environ", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.identifiers.org/registry/rapdb.locus" }, { - "@id": "https://bioregistry.io/registry/kegg" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Environ" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON" + "@id": "https://registry.identifiers.org/registry/idr" }, { - "@id": "https://registry.identifiers.org/registry/kegg.environ" + "@id": "https://registry.identifiers.org/registry/civic.mpid" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/drug/environ.html" - }, - "https://bioregistry.io/schema/#0000005": "ev:E00032", - "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^(ev\\:)?E\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000023": { - "@value": "KEGG.EDRUG" - }, - "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.kegg.jp/entry/ev:E00032" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.environ" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ECACC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://orcid.org/0000-0001-9107-0714", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hilmar Lapp" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hilmar.lapp@duke.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/ehda", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human developmental anatomy, timed version" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/hinv.protein" + }, { - "@id": "http://aber-owl.net/ontology/EHDA" + "@id": "https://registry.identifiers.org/registry/ensembl.plant" }, { - "@id": "https://www.obofoundry.org/ontology/ehda" + "@id": "https://registry.identifiers.org/registry/vgnc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDA" + "@id": "https://registry.identifiers.org/registry/biogrid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDA" + "@id": "https://registry.identifiers.org/registry/eggnog" }, { - "@id": "https://registry.bio2kg.org/resource/ehda" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/peroxibase" + }, { - "@value": "development" + "@id": "https://registry.identifiers.org/registry/mgnify.samp" }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/clinicaltrials" }, { - "@value": "human" + "@id": "https://registry.identifiers.org/registry/metlin" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/cameo" }, { - "@value": "anatomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genex.hgu.mrc.ac.uk/" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/EHDA/6/ehda.obo" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N7c54b74df1bf4d98878dd82a0b518dd4" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDA_", - "https://bioregistry.io/schema/#0000029": { - "@value": "ehda" - } - }, - { - "@id": "_:N7c54b74df1bf4d98878dd82a0b518dd4", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Bard" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "J.Bard@ed.ac.uk" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/PR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/eco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/fovt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/uniparc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Archive" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/nbrc" + }, { - "@id": "https://www.re3data.org/repository/r3d100011519" + "@id": "https://registry.identifiers.org/registry/jcggdb" }, { - "@id": "https://registry.bio2kg.org/resource/uniparc" + "@id": "https://registry.identifiers.org/registry/neurovault.collection" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc" + "@id": "https://registry.identifiers.org/registry/rism" }, { - "@id": "http://edamontology.org/data_2392" + "@id": "https://registry.identifiers.org/registry/sedml.language" }, { - "@id": "https://registry.identifiers.org/registry/uniparc" + "@id": "https://registry.identifiers.org/registry/pathwaycommons" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc" + "@id": "https://registry.identifiers.org/registry/gtex" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/gpcrdb" + }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/validatordb" }, { - "@value": "structure" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/uniparc/" - }, - "https://bioregistry.io/schema/#0000005": "UPI000000000A", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1", - "https://bioregistry.io/schema/#0000008": "^UPI[A-F0-9]{10}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=UPI000000000A" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniparc" - } - }, - { - "@id": "https://registry.identifiers.org/registry/tarbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ror", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ror-community" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Research Organization Registry" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/oryzabase.reference" + }, { - "@id": "https://fairsharing.org/FAIRsharing.1jKfji" + "@id": "https://registry.identifiers.org/registry/mobidb" }, { - "@id": "https://registry.identifiers.org/registry/ror" + "@id": "https://registry.identifiers.org/registry/ricenetdb.reaction" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ror" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/bdgp.est" + }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/re3data" }, { - "@value": "data management" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ror.org" - }, - "https://bioregistry.io/schema/#0000005": "03yrm5c26", - "https://bioregistry.io/schema/#0000006": "https://ror.org/$1", - "https://bioregistry.io/schema/#0000008": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://w3id.org/rorio/rorio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2916-3423" - }, - "https://bioregistry.io/schema/#0000024": "https://ror.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://ror.org/03yrm5c26" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ror" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.284", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.METAGENOME", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/tissuelist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/mmp.ref", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MarRef" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/rfam" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref" + "@id": "https://registry.identifiers.org/registry/unite" }, { - "@id": "https://registry.identifiers.org/registry/mmp.ref" + "@id": "https://registry.identifiers.org/registry/eo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mmp.sfb.uit.no/databases/marref/" - }, - "https://bioregistry.io/schema/#0000005": "MMP3312982.2", - "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marref/#/records/$1", - "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marref/#/records/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mmp.sfb.uit.no/databases/marref/#/records/MMP3312982.2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmp.ref" - } - }, - { - "@id": "http://aber-owl.net/ontology/DIDEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CIDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/arxiv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bartoc.org/en/node/571", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/jcm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/seed.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/lepao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/insect-morphology/lepao" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lepidoptera Anatomy Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/vario" + }, { - "@id": "http://www.ontobee.org/ontology/LEPAO" + "@id": "https://registry.identifiers.org/registry/drsc" }, { - "@id": "http://aber-owl.net/ontology/LEPAO" + "@id": "https://registry.identifiers.org/registry/prosite" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao" + "@id": "https://registry.identifiers.org/registry/ngl" }, { - "@id": "https://www.obofoundry.org/ontology/lepao" + "@id": "https://registry.identifiers.org/registry/planttfdb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LEPAO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/gitlab" + }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/dailymed" }, { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/insect-morphology/lepao" - }, - "https://bioregistry.io/schema/#0000005": "0000005", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LEPAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/lepao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "https://registry.identifiers.org/registry/mod" + }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://registry.identifiers.org/registry/cst.ab" }, { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://registry.identifiers.org/registry/biolink" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://registry.identifiers.org/registry/pazar" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://registry.identifiers.org/registry/ensembl.protist" }, { - "@id": "https://bioregistry.io/registry/bspo" + "@id": "https://registry.identifiers.org/registry/omia" }, { - "@id": "https://bioregistry.io/registry/pato" + "@id": "https://registry.identifiers.org/registry/unigene" }, { - "@id": "https://bioregistry.io/registry/aism" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9136-9932" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LEPAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/LEPAO_0000005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "lepao" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tppk10", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ENVO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZECO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/hamap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "High-quality Automated and Manual Annotation of microbial Proteomes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/modeldb" + }, { - "@id": "https://www.uniprot.org/database/DB-0041" + "@id": "https://registry.identifiers.org/registry/geo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap" + "@id": "https://registry.identifiers.org/registry/ecyano.experiment" }, { - "@id": "https://registry.identifiers.org/registry/hamap" + "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP" + "@id": "https://registry.identifiers.org/registry/so" }, { - "@id": "http://edamontology.org/data_2766" + "@id": "https://registry.identifiers.org/registry/ncbiprotein" }, { - "@id": "https://fairsharing.org/FAIRsharing.63m4ss" + "@id": "https://registry.identifiers.org/registry/ccdc" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP" + "@id": "https://registry.identifiers.org/registry/jcsd" }, { - "@id": "https://registry.bio2kg.org/resource/hamap" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/reactome" + }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/clinvar.submission" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://hamap.expasy.org/" - }, - "https://bioregistry.io/schema/#0000005": "MF_01400", - "https://bioregistry.io/schema/#0000006": "https://hamap.expasy.org/unirule/$1", - "https://bioregistry.io/schema/#0000008": "^MF_\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2148-9135" - }, - "https://bioregistry.io/schema/#0000024": "https://hamap.expasy.org/unirule/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://hamap.expasy.org/unirule/MF_01400" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hamap" - } - }, - { - "@id": "https://registry.identifiers.org/registry/neuromorpho", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://orcid.org/0000-0002-9473-283X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Carlos Oscar S. Sorzano" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "isanchez@cnb.csic.es" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/ricenetdb.gene", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RiceNetDB Gene" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/neurolex" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE" + "@id": "https://registry.identifiers.org/registry/occ" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene" + "@id": "https://registry.identifiers.org/registry/aspgd.locus" }, { - "@id": "https://registry.identifiers.org/registry/ricenetdb.gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bis.zju.edu.cn/ricenetdb/" - }, - "https://bioregistry.io/schema/#0000005": "LOC_Os01g49190.1", - "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=LOC_Os01g49190.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ricenetdb.gene" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dragondb.dna", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-3884-3420", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simon Cox" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dr.shorthair@pm.me" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gnd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unimod", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/comptox", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/apid.interactions", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "APID Interactomes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/mirbase.mature" + }, { - "@id": "https://registry.identifiers.org/registry/apid.interactions" + "@id": "https://registry.identifiers.org/registry/ird.segment" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APID.INTERACTIONS" + "@id": "https://registry.identifiers.org/registry/linguist" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cicblade.dep.usal.es:8080/APID/" - }, - "https://bioregistry.io/schema/#0000005": "P01116", - "https://bioregistry.io/schema/#0000006": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=P01116" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "apid.interactions" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ricecyc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/omit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://orcid.org/0000-0002-9136-9932", - "http://www.w3.org/2000/01/rdf-schema#label": [ + "@id": "https://registry.identifiers.org/registry/biosample" + }, { - "@value": "Luis A. Gonzalez-Montana" + "@id": "https://registry.identifiers.org/registry/biocatalogue.service" }, { - "@value": "Luis González-Montaña" - } - ], - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "lagonzalezmo@unal.edu.co" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.XykycZ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sgd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ecoportal" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_339", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "http://www.ontobee.org/ontology/REO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.DRUG", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/umbbd.enzyme", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jcg19w", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oridb.sacch", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0197", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://orcid.org/0000-0002-5898-1820", - "http://purl.org/dc/terms/contributor": { - "@id": "https://bioregistry.io/registry/voc4cat" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Linke" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "David.Linke@catalysis.de" - } - }, - { - "@id": "https://bioregistry.io/registry/grin", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Germplasm Resources Information Network" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/chembl.compound" + }, { - "@id": "https://fairsharing.org/FAIRsharing.3axym7" + "@id": "https://registry.identifiers.org/registry/glycomedb" }, { - "@id": "https://registry.bio2kg.org/resource/grin" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ars-grin.gov/" - }, - "https://bioregistry.io/schema/#0000005": "159787", - "https://bioregistry.io/schema/#0000006": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=159787" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "grin" - } - }, - { - "@id": "https://registry.identifiers.org/registry/icdc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hpvbxb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/mmmp.biomaps", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Melanoma Molecular Map Project Biomaps" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/licebase" + }, { - "@id": "https://registry.identifiers.org/registry/mmmp:biomaps" + "@id": "https://registry.identifiers.org/registry/grsdb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomaps" + "@id": "https://registry.identifiers.org/registry/sasbdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS" + "@id": "https://registry.identifiers.org/registry/bdsc" }, { - "@id": "https://registry.bio2kg.org/resource/mmmp" + "@id": "https://registry.identifiers.org/registry/ensembl.bacteria" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/gwascentral.study" + }, { - "@value": "molecule" + "@id": "https://registry.identifiers.org/registry/kegg.genome" }, { - "@value": "interaction" + "@id": "https://registry.identifiers.org/registry/aspgd.protein" }, { - "@value": "pathway" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mmmp.org/MMMP/public/biomap/listBiomap.mmmp" - }, - "https://bioregistry.io/schema/#0000005": "37", - "https://bioregistry.io/schema/#0000006": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "mmmp:biomaps" - }, - "https://bioregistry.io/schema/#0000024": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=37" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmmp.biomaps" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/syoid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gemina Symptom Ontology" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "syoid" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_348", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/multicellds", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://registry.identifiers.org/registry/noncodev3" + }, { - "@id": "https://bioregistry.io/registry/multicellds.cell_line" + "@id": "https://registry.identifiers.org/registry/irefweb" }, { - "@id": "https://bioregistry.io/registry/multicellds.snapshot" + "@id": "https://registry.identifiers.org/registry/col" }, { - "@id": "https://bioregistry.io/registry/multicellds.collection" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MultiCellDS" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.pqzyd5" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://multicellds.org/MultiCellDB.php" - }, - "https://bioregistry.io/schema/#0000005": "MCDS_S_0000000001", - "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8003-6860" - }, - "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://multicellds.org/MultiCellDB/MCDS_S_0000000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "multicellds" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IOBC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pharmvar", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_2716", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.fungi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/storedb.file", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "File inside StoreDB", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.identifiers.org/registry/beetlebase" + }, { - "@id": "https://bioregistry.io/registry/storedb" + "@id": "https://registry.identifiers.org/registry/obv" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "STOREDB at University of Cambridge" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.storedb.org/" - }, - "https://bioregistry.io/schema/#0000005": "12929", - "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/store_v3/download.jsp?fileId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/store_v3/download.jsp?fileId=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.storedb.org/store_v3/download.jsp?fileId=12929" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "storedb.file" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bioproject", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0003-0612-0970", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gwen Frishkoff" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "gfrishkoff@gsu.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/clinvar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/clinvar.record" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinVar Variation" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/genecards" + }, { - "@id": "http://www.wikidata.org/entity/P1929" + "@id": "https://registry.identifiers.org/registry/mesh.2012" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ClinVar" + "@id": "https://registry.identifiers.org/registry/pubchem.bioassay" }, { - "@id": "https://www.re3data.org/repository/r3d100013331" + "@id": "https://registry.identifiers.org/registry/biokc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ClinVarVariant" + "@id": "https://registry.identifiers.org/registry/pharmgkb.drug" }, { - "@id": "https://fairsharing.org/FAIRsharing.wx5r6f" + "@id": "https://registry.identifiers.org/registry/ricenetdb.gene" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar" + "@id": "https://registry.identifiers.org/registry/combine.specifications" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.319" + "@id": "https://registry.identifiers.org/registry/panther.family" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR" + "@id": "https://registry.identifiers.org/registry/bykdb" }, { - "@id": "https://registry.identifiers.org/registry/clinvar" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/aop" + }, { - "@value": "genomics" + "@id": "https://registry.identifiers.org/registry/wormpep" }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/hpm.peptide" }, { - "@value": "clinical studies" + "@id": "https://registry.identifiers.org/registry/macie" }, { - "@value": "preclinical studies" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" - }, - "https://bioregistry.io/schema/#0000005": "12345", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://registry.identifiers.org/registry/ecyano.model" + }, + { + "@id": "https://registry.identifiers.org/registry/rnamods" + }, + { + "@id": "https://registry.identifiers.org/registry/goa" + }, + { + "@id": "https://registry.identifiers.org/registry/nemo" + }, + { + "@id": "https://registry.identifiers.org/registry/aop.stressor" + }, + { + "@id": "https://registry.identifiers.org/registry/sisu" + }, { - "@value": "clinvar.variant" + "@id": "https://registry.identifiers.org/registry/bao" }, { - "@value": "clinvar.variation" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/clinvar/variation/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/clinvar/variation/12345" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clinvar" - } - }, - { - "@id": "https://bioregistry.io/registry/atcc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "American Type Culture Collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/lipidbank" + }, { - "@id": "https://fairsharing.org/FAIRsharing.j0ezpm" + "@id": "https://registry.identifiers.org/registry/ndc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATCC" + "@id": "https://registry.identifiers.org/registry/ensembl.fungi" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.77" + "@id": "https://registry.identifiers.org/registry/funcbase.mouse" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ATCC" + "@id": "https://registry.identifiers.org/registry/slm" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC" + "@id": "https://registry.identifiers.org/registry/probonto" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atcc" + "@id": "https://registry.identifiers.org/registry/pmdb" }, { - "@id": "https://registry.identifiers.org/registry/atcc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/pdb" + }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/topdb" }, { - "@value": "virology" + "@id": "https://registry.identifiers.org/registry/sider.effect" }, { - "@value": "epidemiology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.lgcstandards-atcc.org" - }, - "https://bioregistry.io/schema/#0000005": "11303", - "https://bioregistry.io/schema/#0000006": "https://www.atcc.org/products/$1", - "https://bioregistry.io/schema/#0000008": "^([a-zA-Z]+-)?\\d+(\\.\\d)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://registry.identifiers.org/registry/toxoplasma" + }, { - "@value": "ATCC(in host)" + "@id": "https://registry.identifiers.org/registry/bbkg" }, { - "@value": "ATCC number" + "@id": "https://registry.identifiers.org/registry/seed.compound" }, { - "@value": "ATCC" + "@id": "https://registry.identifiers.org/registry/trichdb" }, { - "@value": "ATCC(dna)" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.atcc.org/products/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.atcc.org/products/11303" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "atcc" - } - }, - { - "@id": "http://www.ontobee.org/ontology/TO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/compulyeast", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Compluyeast-2D-DB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/vmhmetabolite" + }, { - "@id": "https://fairsharing.org/FAIRsharing.rbjs3e" + "@id": "https://registry.identifiers.org/registry/pgx" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST" + "@id": "https://registry.identifiers.org/registry/paleodb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast" + "@id": "https://registry.identifiers.org/registry/vfdb.gene" }, { - "@id": "https://registry.identifiers.org/registry/compulyeast" + "@id": "https://registry.identifiers.org/registry/icd" }, { - "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://compluyeast2dpage.dacya.ucm.es/" - }, - "https://bioregistry.io/schema/#0000005": "O08709", - "https://bioregistry.io/schema/#0000006": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/uniprot" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=O08709" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "compulyeast" - } - }, - { - "@id": "https://bioregistry.io/registry/cnrs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for an academic research group issued by the CNRS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "French National Center for Scientific Research - Research Group Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P4550" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://annuaire.cnrs.fr" - }, - "https://bioregistry.io/schema/#0000005": "UMR7315", - "https://bioregistry.io/schema/#0000006": "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u", - "https://bioregistry.io/schema/#0000008": "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY)\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cnrs:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=UMR7315&p_origine_appel=u" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cnrs" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/pav", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000447", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://bioregistry.io/registry/clb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChecklistBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/clb" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.checklistbank.org" - }, - "https://bioregistry.io/schema/#0000005": "1010", - "https://bioregistry.io/schema/#0000006": "https://www.checklistbank.org/dataset/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+(LR)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.checklistbank.org/dataset/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.checklistbank.org/dataset/1010" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9gqfpm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ATCC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cameo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-8886-8311", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ruili Huang" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ruili.huang@nih.gov" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pandit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_358", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAHE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/planp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wsfk5z", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zx2ztd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/echobase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/HGNC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/orcid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/frbrer", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.identifiers.org/registry/hgnc" + }, { - "@id": "https://bioregistry.io/registry/frbr" + "@id": "https://registry.identifiers.org/registry/nmrshiftdb2" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Functional Requirements for Bibliographic Records Entity-Relationship Model" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.iflastandards.info/fr/frbr/frbrer" - }, - "https://bioregistry.io/schema/#0000005": "1001", - "https://bioregistry.io/schema/#0000006": "http://iflastandards.info/ns/fr/frbr/frbrer/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://iflastandards.info/ns/fr/frbr/frbrer/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://iflastandards.info/ns/fr/frbr/frbrer/1001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "frbrer" - } - }, - { - "@id": "https://registry.identifiers.org/registry/disprot", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FOODON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ENVO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://aber-owl.net/ontology/BCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BCGO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-1005-8383", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pankaj Jaiswal" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jaiswalp@science.oregonstate.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot.isoform", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0091", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "http://www.wikidata.org/entity/P1692", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/metatlas", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis.", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://registry.identifiers.org/registry/google.patent" + }, { - "@id": "https://bioregistry.io/registry/metatlas.metabolite" + "@id": "https://registry.identifiers.org/registry/edam" }, { - "@id": "https://bioregistry.io/registry/metatlas.reaction" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Metabolic Atlas" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/metatlas" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/sabiork.compound" + }, { - "@value": "reactions" + "@id": "https://registry.identifiers.org/registry/ligandbook" }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/kegg.glycan" }, { - "@value": "metabolites" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metabolicatlas.org" - }, - "https://bioregistry.io/schema/#0000005": "MAM01234c", - "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", - "https://bioregistry.io/schema/#0000008": "^(MAM\\d{5}\\w)|(MAR\\d{5})$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7753-9042" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAM01234c" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "metatlas" - } - }, - { - "@id": "https://registry.identifiers.org/registry/imgt.hla", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.aq280w", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/genpept", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/HCPCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/icd10", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 10th Revision" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/bgee.gene" + }, { - "@id": "http://aber-owl.net/ontology/ICD10" + "@id": "https://registry.identifiers.org/registry/tgd" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd" + "@id": "https://registry.identifiers.org/registry/aceview.worm" }, { - "@id": "https://fairsharing.org/FAIRsharing.nj16g" + "@id": "https://registry.identifiers.org/registry/medlineplus" }, { - "@id": "https://bartoc.org/en/node/447" + "@id": "https://registry.identifiers.org/registry/tair.name" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3" + "@id": "https://registry.identifiers.org/registry/rapdb.transcript" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10" + "@id": "https://registry.identifiers.org/registry/modeldb.concept" }, { - "@id": "http://www.wikidata.org/entity/P494" + "@id": "https://registry.identifiers.org/registry/ctd.disease" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10" + "@id": "https://registry.identifiers.org/registry/rnacentral" }, { - "@id": "http://edamontology.org/data_2611" + "@id": "https://registry.identifiers.org/registry/imgt.ligm" }, { - "@id": "https://registry.bio2kg.org/resource/icd" + "@id": "https://registry.identifiers.org/registry/pkdb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ICD" + "@id": "https://registry.identifiers.org/registry/uniprot.chain" }, { - "@id": "https://registry.identifiers.org/registry/icd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/vipr" + }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/gmd.gcms" }, { - "@value": "health science" + "@id": "https://registry.identifiers.org/registry/treefam" }, { - "@value": "classification" + "@id": "https://registry.identifiers.org/registry/geogeo" }, { - "@value": "taxonomy" + "@id": "https://registry.identifiers.org/registry/datf" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/lei" }, { - "@value": "disease" + "@id": "https://registry.identifiers.org/registry/opb" }, { - "@value": "epidemiology" + "@id": "https://registry.identifiers.org/registry/tair.gene" }, { - "@value": "global health" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icd.who.int/browse10" - }, - "https://bioregistry.io/schema/#0000005": "C34", - "https://bioregistry.io/schema/#0000006": "https://icd.who.int/browse10/2019/en#/$1", - "https://bioregistry.io/schema/#0000008": "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N6afd81d0b18c4d788763e7e1cf916125" - }, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://registry.identifiers.org/registry/hgnc.genegroup" + }, { - "@value": "ICD10" + "@id": "https://registry.identifiers.org/registry/cabri" }, { - "@value": "ICD-10" + "@id": "https://registry.identifiers.org/registry/cstr" }, { - "@value": "ICD10WHO" + "@id": "https://registry.identifiers.org/registry/metacyc.compound" }, { - "@value": "ICD" - } - ], - "https://bioregistry.io/schema/#0000024": "https://icd.who.int/browse10/2019/en#/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://icd.who.int/browse10/2019/en#/C34" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "icd10" - } - }, - { - "@id": "_:N6afd81d0b18c4d788763e7e1cf916125", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "World Health Organization" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "info@who.int" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/METLIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fex4c8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-5153-9079", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John-Marc Chandonia" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "JMChandonia@lbl.gov" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MOP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/bco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9b7wvk", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.qtl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.cpneh8", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bartoc.org/en/node/1937", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://registry.identifiers.org/registry/noncodev4.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellosaurus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/collection/0000012", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://registry.identifiers.org/registry/isbn" + }, { - "@id": "https://bioregistry.io/registry/tctr" + "@id": "https://registry.identifiers.org/registry/zfin" }, { - "@id": "https://bioregistry.io/registry/phrr" + "@id": "https://registry.identifiers.org/registry/gnpis" }, { - "@id": "https://bioregistry.io/registry/snctp" + "@id": "https://registry.identifiers.org/registry/dashr.expression" }, { - "@id": "https://bioregistry.io/registry/uminctr" + "@id": "https://registry.identifiers.org/registry/ydpm" }, { - "@id": "https://bioregistry.io/registry/ctis" + "@id": "https://registry.identifiers.org/registry/bold.taxonomy" }, { - "@id": "https://bioregistry.io/registry/ctri" + "@id": "https://registry.identifiers.org/registry/odc.tbi" }, { - "@id": "https://bioregistry.io/registry/clinicaltrials" + "@id": "https://registry.identifiers.org/registry/phenolexplorer" }, { - "@id": "https://bioregistry.io/registry/rebec" + "@id": "https://registry.identifiers.org/registry/treebase" }, { - "@id": "https://bioregistry.io/registry/kcris" + "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset" }, { - "@id": "https://bioregistry.io/registry/lbctr" + "@id": "https://registry.identifiers.org/registry/cdd" }, { - "@id": "https://bioregistry.io/registry/repec" + "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord" }, { - "@id": "https://bioregistry.io/registry/euclinicaltrials" + "@id": "https://registry.identifiers.org/registry/ctd.gene" }, { - "@id": "https://bioregistry.io/registry/itmctr" + "@id": "https://registry.identifiers.org/registry/metacyc.reaction" }, { - "@id": "https://bioregistry.io/registry/hc.trial" + "@id": "https://registry.identifiers.org/registry/gdc" }, { - "@id": "https://bioregistry.io/registry/jrct" + "@id": "https://registry.identifiers.org/registry/ttd.target" }, { - "@id": "https://bioregistry.io/registry/anzctr" + "@id": "https://registry.identifiers.org/registry/tcdb" }, { - "@id": "https://bioregistry.io/registry/slctr" + "@id": "https://registry.identifiers.org/registry/dlxb" }, { - "@id": "https://bioregistry.io/registry/drks" + "@id": "https://registry.identifiers.org/registry/taxonomy" }, { - "@id": "https://bioregistry.io/registry/pactr" + "@id": "https://registry.identifiers.org/registry/doqcs.pathway" }, { - "@id": "https://bioregistry.io/registry/chictr" + "@id": "https://registry.identifiers.org/registry/cellimage" }, { - "@id": "https://bioregistry.io/registry/rpcec" + "@id": "https://registry.identifiers.org/registry/oci" }, { - "@id": "https://bioregistry.io/registry/isrctn" + "@id": "https://registry.identifiers.org/registry/mirex" }, { - "@id": "https://bioregistry.io/registry/irct" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clinical Trial Registries" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/lipidbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-6686-5475", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "John Westbrook" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jwest@rcsb.rutgers.edu" - } - }, - { - "@id": "http://www.wikidata.org/entity/P11430", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/bindingdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BindingDB is the first public database of protein-small molecule affinity data.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BindingDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/biostudies" + }, { - "@id": "https://registry.bio2kg.org/resource/bindingdb" + "@id": "https://registry.identifiers.org/registry/hgnc.genefamily" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB" + "@id": "https://registry.identifiers.org/registry/kegg.environ" }, { - "@id": "https://fairsharing.org/FAIRsharing.3b36hk" + "@id": "https://registry.identifiers.org/registry/gsso" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb" + "@id": "https://registry.identifiers.org/registry/vcell" }, { - "@id": "https://registry.identifiers.org/registry/bindingdb" + "@id": "https://registry.identifiers.org/registry/covid19" }, { - "@id": "https://www.re3data.org/repository/r3d100012074" + "@id": "https://registry.identifiers.org/registry/sabiork.ec" }, { - "@id": "https://www.uniprot.org/database/DB-0127" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/clinvar" + }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/drugbankv4.target" }, { - "@value": "computational chemistry" + "@id": "https://registry.identifiers.org/registry/odor" }, { - "@value": "medicinal chemistry" + "@id": "https://registry.identifiers.org/registry/omid" }, { - "@value": "drug discovery" + "@id": "https://registry.identifiers.org/registry/adw" }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/bgee.stage" }, { - "@value": "interaction" + "@id": "https://registry.identifiers.org/registry/fcb" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.bindingdb.org" - }, - "https://bioregistry.io/schema/#0000005": "e999", - "https://bioregistry.io/schema/#0000006": "http://www.bindingdb.org/compact/$1", - "https://bioregistry.io/schema/#0000008": "^\\w\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3375-1738" - }, - "https://bioregistry.io/schema/#0000024": "http://www.bindingdb.org/compact/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bindingdb.org/compact/e999" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bindingdb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/kegg.genes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3345", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://orcid.org/0000-0002-7702-4495", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allyson Lister" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "allyson.lister@oerc.ox.ac.uk" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/xpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://edamontology.org/data_2620", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/re3data", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "re3data" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/ga4ghdos" + }, { - "@id": "https://bartoc.org/en/node/822" + "@id": "https://registry.identifiers.org/registry/antibodyregistry" }, { - "@id": "https://registry.identifiers.org/registry/re3data" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://datacite.org" - }, - "https://bioregistry.io/schema/#0000005": "r3d100010772", - "https://bioregistry.io/schema/#0000006": "https://www.re3data.org/repository/$1", - "https://bioregistry.io/schema/#0000008": "^r3d\\d{9,9}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.re3data.org/repository/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.re3data.org/repository/r3d100010772" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "re3data" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4vr0ys", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/prefixcommons", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A registry of life science prefxes", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Prefix Commons" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://prefixcommons.org" - }, - "https://bioregistry.io/schema/#0000005": "ChEBI", - "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/prefixcommons/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/prefixcommons/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons/ChEBI" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.s9ztmd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/phipo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/panther", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ORNASEQ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/PSDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_DYSFUNCTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIGANDBOX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rvz0m9", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/miriam.resource", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.identifiers.org/registry/eco" + }, + { + "@id": "https://registry.identifiers.org/registry/mmmp:biomaps" + }, + { + "@id": "https://registry.identifiers.org/registry/oryzabase.stage" + }, + { + "@id": "https://registry.identifiers.org/registry/mycobank" + }, { - "@id": "https://bioregistry.io/registry/miriam" + "@id": "https://registry.identifiers.org/registry/pombase" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MIRIAM Legacy Registry Identifier" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/fbol" + }, { - "@id": "https://registry.bio2kg.org/resource/miriam.resource" + "@id": "https://registry.identifiers.org/registry/disprot.region" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE" + "@id": "https://registry.identifiers.org/registry/civic.vid" }, { - "@id": "https://registry.identifiers.org/registry/miriam.resource" + "@id": "https://registry.identifiers.org/registry/ubio.namebank" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/miriam.resource" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/miriam/" - }, - "https://bioregistry.io/schema/#0000005": "00100005", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/miriam/main/resources/$1", - "https://bioregistry.io/schema/#0000008": "^001\\d{5}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/miriam/main/resources/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/miriam/main/resources/00100005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "miriam.resource" - } - }, - { - "@id": "https://bioregistry.io/registry/occ", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OpenCitations Corpus" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/cas" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ" + "@id": "https://registry.identifiers.org/registry/p3db.protein" }, { - "@id": "https://registry.identifiers.org/registry/occ" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org/oc/corpus" - }, - "https://bioregistry.io/schema/#0000005": "br/1", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/corpus/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z][a-z]/[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/corpus/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/oc/corpus/br/1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "occ" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/collagenmutdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Collagen Mutation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/cmd" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.le.ac.uk/genetics/collagen/" - }, - "https://bioregistry.io/schema/#0000005": "COL3A1", - "https://bioregistry.io/schema/#0000006": "https://eds.gene.le.ac.uk/home.php?select_db=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/hgnc.symbol" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://eds.gene.le.ac.uk/home.php?select_db=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://eds.gene.le.ac.uk/home.php?select_db=COL3A1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "collagenmutdb" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/sopharm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ecyano.rule", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8121", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/ovae", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OVAE-Ontology/ovae" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Vaccine Adverse Events" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/lgai.cede" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae" + "@id": "https://registry.identifiers.org/registry/fb" }, { - "@id": "https://www.obofoundry.org/ontology/ovae" + "@id": "https://registry.identifiers.org/registry/rouge" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OVAE" + "@id": "https://registry.identifiers.org/registry/insdc.sra" }, { - "@id": "http://aber-owl.net/ontology/OVAE" + "@id": "https://registry.identifiers.org/registry/foodon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE" + "@id": "https://registry.identifiers.org/registry/plasmodb" }, { - "@id": "http://www.ontobee.org/ontology/OVAE" + "@id": "https://registry.identifiers.org/registry/skm" }, { - "@id": "https://fairsharing.org/FAIRsharing.w4x6n4" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/ps" + }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/iedb" }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/xenbase" }, { - "@value": "biomedical science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.violinet.org/ovae/" - }, - "https://bioregistry.io/schema/#0000005": "0000609", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OVAE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ovae.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OVAE_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OVAE_0000609" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ovae" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mpath", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/TO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010741", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/insdc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8656", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/iev", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/rbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t1a232", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/mirnest", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-1618-9827", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gary L Andersen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "GLAndersen@lbl.gov" - } - }, - { - "@id": "http://aber-owl.net/ontology/XLMOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://orcid.org/0000-0001-5705-7831", - "http://purl.org/dc/terms/contributor": [ + "@id": "https://registry.identifiers.org/registry/ttd.drug" + }, { - "@id": "https://bioregistry.io/registry/adcad" + "@id": "https://registry.identifiers.org/registry/mpid" }, { - "@id": "https://bioregistry.io/registry/mosaic" + "@id": "https://registry.identifiers.org/registry/biocarta.pathway" }, { - "@id": "https://bioregistry.io/registry/hoip" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Harry Caufield" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "j.harry.caufield@gmail.com" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sabiork.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/leafsnap", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Leafsnap" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P10538" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://leafsnap.com/" - }, - "https://bioregistry.io/schema/#0000005": "Amelanchier laevis", - "https://bioregistry.io/schema/#0000006": "http://leafsnap.com/species/$1/", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/leafsnap:", - "https://bioregistry.io/schema/#0000029": { - "@value": "leafsnap" - } - }, - { - "@id": "http://aber-owl.net/ontology/RO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bacmap.biog", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://edamontology.org/data_2646", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0143", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012688", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://edamontology.org/data_2326", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/nbn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/genecards", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/MFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sdbs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/hba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the human brain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Brain Atlas" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://human.brain-map.org" - }, - "https://bioregistry.io/schema/#0000005": "4005", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/hba/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-hba.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/hba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/hba/4005" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hba" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ybxnhg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/ATC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/soy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.identifiers.org/registry/jstor", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/aio", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/berkeleybop" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Artificial Intelligence Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/hmdb" + }, { - "@id": "http://aber-owl.net/ontology/AIO" + "@id": "https://registry.identifiers.org/registry/orthodb" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AIO" + "@id": "https://registry.identifiers.org/registry/disprot" }, { - "@id": "https://fairsharing.org/FAIRsharing.8d6247" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/noncodev4.rna" + }, { - "@value": "artificial intelligence" + "@id": "https://registry.identifiers.org/registry/hprd" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/berkeleybop/artificial-intelligence-ontology" - }, - "https://bioregistry.io/schema/#0000005": "Causal_Graphical_Model", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/aio/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8175-045X" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0001-9439-5346" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/aio/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/aio/Causal_Graphical_Model" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aio" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013316", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ardb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011527", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bbkg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/mesh.2012", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MeSH 2012" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/chemidplus" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mesh.2012" + "@id": "https://registry.identifiers.org/registry/protonet.proteincard" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012" + "@id": "https://registry.identifiers.org/registry/genetree" }, { - "@id": "https://registry.identifiers.org/registry/mesh.2012" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nlm.nih.gov/mesh/" - }, - "https://bioregistry.io/schema/#0000005": "17186", - "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/mesh" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mesh.2012:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=17186&view=expanded" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mesh.2012" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/apd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Antimicrobial Peptide Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/uberon" + }, { - "@id": "https://registry.identifiers.org/registry/apd" + "@id": "https://registry.identifiers.org/registry/unii" }, { - "@id": "https://www.re3data.org/repository/r3d100012901" + "@id": "https://registry.identifiers.org/registry/dbsnp" }, { - "@id": "https://registry.bio2kg.org/resource/apd" + "@id": "https://registry.identifiers.org/registry/rhea" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apd" + "@id": "https://registry.identifiers.org/registry/oma.grp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APD" + "@id": "https://registry.identifiers.org/registry/insdc.gca" }, { - "@id": "https://fairsharing.org/FAIRsharing.ctwd7b" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/arrayexpress.platform" + }, { - "@value": "biology" + "@id": "https://registry.identifiers.org/registry/hamap" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://aps.unmc.edu/AP/" - }, - "https://bioregistry.io/schema/#0000005": "01001", - "https://bioregistry.io/schema/#0000006": "http://aps.unmc.edu/AP/database/query_output.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://aps.unmc.edu/AP/database/query_output.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://aps.unmc.edu/AP/database/query_output.php?ID=01001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "apd" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PdumDv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/lipidbank", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.efv7gw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/3dmet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/sheepqtldb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.identifiers.org/registry/biosimulations" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://registry.identifiers.org/registry/string" }, { - "@id": "https://bioregistry.io/registry/qtldb" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Genome Sheep QTL" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/pmc" + }, { - "@id": "https://registry.bio2kg.org/resource/sheepqtldb" + "@id": "https://registry.identifiers.org/registry/lincs.cell" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb" + "@id": "https://registry.identifiers.org/registry/4dn" }, { - "@id": "https://registry.identifiers.org/registry/sheepqtldb" + "@id": "https://registry.identifiers.org/registry/wikipedia.en" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/cubedb" + }, { - "@value": "genome" + "@id": "https://registry.identifiers.org/registry/phylomedb" }, { - "@value": "dna" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org/QTLdb" - }, - "https://bioregistry.io/schema/#0000005": "19803", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:19803" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sheepqtldb" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/wormpep", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GDSC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DIDEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/registry/dbmhc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of human Major Histocompatibility Complex" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbMHC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/gv/mhc/" - }, - "https://bioregistry.io/schema/#0000005": "48439", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/cellosaurus" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbmhc" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.530e61", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/p3db.site", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "P3DB Site" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/mp" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE" + "@id": "https://registry.identifiers.org/registry/ega.study" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/p3db.site" + "@id": "https://registry.identifiers.org/registry/ideal" }, { - "@id": "https://registry.identifiers.org/registry/p3db.site" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.p3db.org/" - }, - "https://bioregistry.io/schema/#0000005": "65", - "https://bioregistry.io/schema/#0000006": "http://www.p3db.org/phosphosite.php?id=$1&ref=0", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/p3db.site:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.p3db.org/phosphosite.php?id=65&ref=0" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "p3db.site" - } - }, - { - "@id": "https://orcid.org/0000-0001-9943-6127", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Akhilesh Pandey" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pandey@jhmi.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.reaction", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/NANDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNISTS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_366", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/unichem", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier of a compound in the UniChem database", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniChem compound" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P11089" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://chembl.gitbook.io/unichem/downloads" - }, - "https://bioregistry.io/schema/#0000005": "161671", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=161671" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "unichem" - } - }, - { - "@id": "https://bioregistry.io/registry/worfdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "C. elegans ORFeome cloning project" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/microsporidia" + }, { - "@id": "https://registry.identifiers.org/registry/worfdb" + "@id": "https://registry.identifiers.org/registry/tigrfam" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb" + "@id": "https://registry.identifiers.org/registry/swissregulon" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB" + "@id": "https://registry.identifiers.org/registry/door" }, { - "@id": "https://registry.bio2kg.org/resource/worfdb" + "@id": "https://registry.identifiers.org/registry/meddra" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/WorfDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://worfdb.dfci.harvard.edu/" - }, - "https://bioregistry.io/schema/#0000005": "T01B6.1", - "https://bioregistry.io/schema/#0000006": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\.\\d+)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=T01B6.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "worfdb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3d4jx0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IPR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/molmedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BerkaLab/MolMeDB" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MolMeDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/maizegdb.locus" + }, + { + "@id": "https://registry.identifiers.org/registry/funcbase.fly" + }, + { + "@id": "https://registry.identifiers.org/registry/ped" + }, + { + "@id": "https://registry.identifiers.org/registry/unists" + }, + { + "@id": "https://registry.identifiers.org/registry/viralzone" + }, + { + "@id": "https://registry.identifiers.org/registry/vbase2" + }, + { + "@id": "https://registry.identifiers.org/registry/oma.hog" + }, + { + "@id": "https://registry.identifiers.org/registry/ro" + }, + { + "@id": "https://registry.identifiers.org/registry/cl" + }, + { + "@id": "https://registry.identifiers.org/registry/rebase" + }, + { + "@id": "https://registry.identifiers.org/registry/utrdb" + }, + { + "@id": "https://registry.identifiers.org/registry/facebase" + }, { - "@id": "https://registry.identifiers.org/registry/molmedb" + "@id": "https://registry.identifiers.org/registry/begdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.CWzk3C" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/corrdb" + }, { - "@value": "molecular dynamics" + "@id": "https://registry.identifiers.org/registry/pocketome" }, { - "@value": "molecular biology" + "@id": "https://registry.identifiers.org/registry/aphidbase.transcript" }, { - "@value": "biochemistry" + "@id": "https://registry.identifiers.org/registry/subtilist" }, { - "@value": "molecular physical chemistry" + "@id": "https://registry.identifiers.org/registry/ascl" }, { - "@value": "cheminformatics" + "@id": "https://registry.identifiers.org/registry/glycopost" }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/tair.protein" }, { - "@value": "molecular chemistry" + "@id": "https://registry.identifiers.org/registry/proteomicsdb.protein" }, { - "@value": "computational chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.upol.cz/en/" - }, - "https://bioregistry.io/schema/#0000005": "MM00040", - "https://bioregistry.io/schema/#0000006": "https://molmedb.upol.cz/mol/$1", - "https://bioregistry.io/schema/#0000008": "^[m,M]{2}[0-9]{5}[0-9]*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9472-2589" - }, - "https://bioregistry.io/schema/#0000024": "https://molmedb.upol.cz/mol/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://molmedb.upol.cz/mol/MM00040" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "molmedb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f0bxfg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/trans", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://edamontology.org/data_1002", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.e08886", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb-ccd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0001-5985-7429", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Colin Batchelor" - }, - "http://xmlns.com/foaf/0.1/mbox": [ + "@id": "https://registry.identifiers.org/registry/asin" + }, { - "@value": "BatchelorC@rsc.org" + "@id": "https://registry.identifiers.org/registry/github" }, { - "@value": "batchelorc@rsc.org" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_331", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/omrse", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/mcwdsi/OMRSE" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Modeling and Representation of Social Entities" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/pdb.ligand" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMRSE" + "@id": "https://registry.identifiers.org/registry/viaf" }, { - "@id": "http://aber-owl.net/ontology/OMRSE" + "@id": "https://registry.identifiers.org/registry/gmd.analyte" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse" + "@id": "https://registry.identifiers.org/registry/signaling-gateway" }, { - "@id": "https://www.obofoundry.org/ontology/omrse" + "@id": "https://registry.identifiers.org/registry/ordb" }, { - "@id": "https://fairsharing.org/FAIRsharing.z0p37e" + "@id": "https://registry.identifiers.org/registry/sabiork.reaction" }, { - "@id": "http://www.ontobee.org/ontology/OMRSE" + "@id": "https://registry.identifiers.org/registry/drs.anv0" }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMRSE" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/exac.variant" + }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/dbprobe" }, { - "@value": "social science" + "@id": "https://registry.identifiers.org/registry/hpa" }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/prodom" }, { - "@value": "health science" + "@id": "https://registry.identifiers.org/registry/pseudomonas" }, { - "@value": "demographics" + "@id": "https://registry.identifiers.org/registry/exac.gene" }, { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview" - }, - "https://bioregistry.io/schema/#0000005": "00000022", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMRSE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/omrse.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/labo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9881-1017" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMRSE_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OMRSE_00000022" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "omrse" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000019", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The responsible person for a resource" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has responsible" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000020" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CVDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000302", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/dbo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DBPedia Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/complexportal" + }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/odam" }, { - "@value": "dbpedia" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dbpedia.org/ontology" - }, - "https://bioregistry.io/schema/#0000005": "careerPrizeMoney", - "https://bioregistry.io/schema/#0000006": "https://dbpedia.org/ontology/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dbpedia.org/ontology/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dbpedia.org/ontology/careerPrizeMoney" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbo" - } - }, - { - "@id": "https://bioregistry.io/registry/reactome", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Reactome" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/rgd.strain" + }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000411" + "@id": "https://registry.identifiers.org/registry/metanetx.chemical" }, { - "@id": "https://registry.identifiers.org/registry/reactome" + "@id": "https://registry.identifiers.org/registry/identifiers.namespace" }, { - "@id": "http://edamontology.org/data_1155" + "@id": "https://registry.identifiers.org/registry/ms" }, { - "@id": "http://www.wikidata.org/entity/P3937" + "@id": "https://registry.identifiers.org/registry/vfdb.genus" }, { - "@id": "https://www.re3data.org/repository/r3d100010861" + "@id": "https://registry.identifiers.org/registry/dragondb.dna" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome" + "@id": "https://registry.identifiers.org/registry/chebi" }, { - "@id": "https://registry.bio2kg.org/resource/reactome" + "@id": "https://registry.identifiers.org/registry/minid.test" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome" + "@id": "https://registry.identifiers.org/registry/cath" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/REACTOME" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/brenda" + }, { - "@value": "pathway" + "@id": "https://registry.identifiers.org/registry/chickenqtldb" }, { - "@value": "reaction" + "@id": "https://registry.identifiers.org/registry/ncim" }, { - "@value": "human" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.reactome.org/" - }, - "https://bioregistry.io/schema/#0000005": "R-BTA-418592", - "https://bioregistry.io/schema/#0000006": "https://reactome.org/content/detail/$1", - "https://bioregistry.io/schema/#0000008": "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "https://registry.identifiers.org/registry/dommino" + }, { - "@value": "RE" + "@id": "https://registry.identifiers.org/registry/bacmap.biog" }, { - "@value": "REACT" - } - ], - "https://bioregistry.io/schema/#0000024": "https://reactome.org/content/detail/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://reactome.org/content/detail/R-BTA-418592" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "reactome" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PLANP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Millipore", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.DISEASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bitterdb.rec", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.COMPOUND", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dg.anv0", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-6195-6976", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tudor Oprea" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "toprea@salud.unm.edu" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/fma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/beetlebase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tribolium Genome Database -- Insertion" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/gwascentral.marker" + }, { - "@id": "https://www.re3data.org/repository/r3d100010921" + "@id": "https://registry.identifiers.org/registry/iao" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BEETLEBASE" + "@id": "https://registry.identifiers.org/registry/gramene.protein" }, { - "@id": "https://registry.bio2kg.org/resource/beetlebase" + "@id": "https://registry.identifiers.org/registry/oma.protein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase" + "@id": "https://registry.identifiers.org/registry/issn" }, { - "@id": "https://fairsharing.org/FAIRsharing.h5f091" + "@id": "https://registry.identifiers.org/registry/iuphar.receptor" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE" + "@id": "https://registry.identifiers.org/registry/sgd" }, { - "@id": "https://registry.identifiers.org/registry/beetlebase" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/dictybase.est" + }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/uniprot.isoform" }, { - "@value": "computational biology" + "@id": "https://registry.identifiers.org/registry/oclc" }, { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://beetlebase.org/" - }, - "https://bioregistry.io/schema/#0000005": "TC010103", - "https://bioregistry.io/schema/#0000006": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1", - "https://bioregistry.io/schema/#0000008": "^TC\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=TC010103" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "beetlebase" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.orthology", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/img.taxon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://bioregistry.io/registry/nif.cell", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Neuronal cell types", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://registry.identifiers.org/registry/drugcentral" + }, { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://registry.identifiers.org/registry/mdm" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Cell" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/tol" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL" + "@id": "https://registry.identifiers.org/registry/go" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL" + "@id": "https://registry.identifiers.org/registry/yeastintron" }, { - "@id": "https://www.obofoundry.org/ontology/nif_cell" + "@id": "https://registry.identifiers.org/registry/maxo" }, { - "@id": "http://aber-owl.net/ontology/NIFCELL" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/multicellds.collection" + }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/pr" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://neuinfo.org/" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_CELL_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/NIFCELL/15/nifcell.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4752-543X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_CELL_", - "https://bioregistry.io/schema/#0000029": { - "@value": "nif.cell" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WD_Prop", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/nucleardb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/te", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terminologia Embryologica" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1693" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ifaa.unifr.ch/" - }, - "https://bioregistry.io/schema/#0000005": "E5.11.2.0.0.0.4", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "te" - } - }, - { - "@id": "https://orcid.org/0000-0001-7577-5028", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hector Escriva" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hescriva@obs-banyuls.fr" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012603", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RESID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/cpt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Current Procedural Terminology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/atc" + }, { - "@id": "http://aber-owl.net/ontology/CPT" + "@id": "https://registry.identifiers.org/registry/arachnoserver" }, { - "@id": "https://fairsharing.org/FAIRsharing.wpxab1" + "@id": "https://registry.identifiers.org/registry/mint" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT" + "@id": "https://registry.identifiers.org/registry/pmr.workspace" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CPT" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/umbbd.compound" + }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/mimodb" }, { - "@value": "health science" + "@id": "https://registry.identifiers.org/registry/abs" }, { - "@value": "medicine" + "@id": "https://registry.identifiers.org/registry/gnd" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.aapc.com" - }, - "https://bioregistry.io/schema/#0000005": "00103", - "https://bioregistry.io/schema/#0000006": "https://www.aapc.com/codes/cpt-codes/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nac3b925206fd4665aad57e5e11afb65a" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ama-cpt" - }, - "https://bioregistry.io/schema/#0000024": "https://www.aapc.com/codes/cpt-codes/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.aapc.com/codes/cpt-codes/00103" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cpt" - } - }, - { - "@id": "_:Nac3b925206fd4665aad57e5e11afb65a", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "American Medical Association" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Intellectual.PropertyServices@ama-assn.org" - } - }, - { - "@id": "https://bioregistry.io/registry/sopharm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Suggested Ontology for Pharmacogenomics" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/bmrb" + }, { - "@id": "http://aber-owl.net/ontology/SOPHARM" + "@id": "https://registry.identifiers.org/registry/polbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SOPHARM" + "@id": "https://registry.identifiers.org/registry/zinc" }, { - "@id": "https://www.obofoundry.org/ontology/sopharm" + "@id": "https://registry.identifiers.org/registry/genprop" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/sio" + }, { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/myco.marinum" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.loria.fr/~coulet/sopharm2.0_description.php" - }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SOPHARM_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SOPHARM/18/sopharm.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1466-062X" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SOPHARM_", - "https://bioregistry.io/schema/#0000029": { - "@value": "sopharm" - } - }, - { - "@id": "http://aber-owl.net/ontology/CRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0182", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ATC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8jsya3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.n8pxvx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/refseq.gcf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/mirtarbase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "mirTarBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/bioportal" + }, + { + "@id": "https://registry.identifiers.org/registry/orphanet.ordo" + }, + { + "@id": "https://registry.identifiers.org/registry/mmp.cat" + }, { "@id": "https://registry.identifiers.org/registry/mirtarbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE" + "@id": "https://registry.identifiers.org/registry/vectorbase" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase" + "@id": "https://registry.identifiers.org/registry/csa" }, { - "@id": "http://www.wikidata.org/entity/P2646" + "@id": "https://registry.identifiers.org/registry/assembly" }, { - "@id": "https://fairsharing.org/FAIRsharing.f0bxfg" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mirtarbase.cuhk.edu.cn/" - }, - "https://bioregistry.io/schema/#0000005": "MIRT000002", - "https://bioregistry.io/schema/#0000006": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1", - "https://bioregistry.io/schema/#0000008": "^MIRT\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8214-1696" - }, - "https://bioregistry.io/schema/#0000024": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=MIRT000002" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirtarbase" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/genecards.geneannot", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeneAnnot: Microarray Gene Annotation" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/geneannot" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene expression" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genecards.weizmann.ac.il/geneannot/" - }, - "https://bioregistry.io/schema/#0000005": "GSTA1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "genecards.geneannot" - } - }, - { - "@id": "https://bioregistry.io/registry/darc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Aligned Ribosomal Complexes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/ilx" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DARC" + "@id": "https://registry.identifiers.org/registry/inchi" }, { - "@id": "https://registry.identifiers.org/registry/darc" + "@id": "https://registry.identifiers.org/registry/norine" }, { - "@id": "https://fairsharing.org/FAIRsharing.evfe2s" + "@id": "https://registry.identifiers.org/registry/mgnify.proj" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://darcsite.genzentrum.lmu.de/darc/index.php" - }, - "https://bioregistry.io/schema/#0000005": "1250", - "https://bioregistry.io/schema/#0000006": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=1250" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "darc" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ckd4rf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FALDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/kyinno", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KYinno cell lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KYinno" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.kyinno.com/" - }, - "https://bioregistry.io/schema/#0000005": "KC-0979", - "https://bioregistry.io/schema/#0000006": "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/kyinno:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=KC-0979.pdf" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kyinno" - } - }, - { - "@id": "https://bioregistry.io/registry/apaonto", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Psychology Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary" + }, { - "@id": "https://fairsharing.org/FAIRsharing.gkw1w8" + "@id": "https://registry.identifiers.org/registry/caps" }, { - "@id": "http://aber-owl.net/ontology/APAONTO" + "@id": "https://registry.identifiers.org/registry/dev.ga4ghdos" }, { - "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://registry.identifiers.org/registry/bitterdb.rec" + }, { - "@value": "ontology" + "@id": "https://registry.identifiers.org/registry/uniref" }, { - "@value": "psychology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" - }, - "https://bioregistry.io/schema/#0000005": "Abdomen", - "https://bioregistry.io/schema/#0000006": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/APAONTO/4/apaonto.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1082-8760" - }, - "https://bioregistry.io/schema/#0000024": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#Abdomen" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "apaonto" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ontobee", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://registry.identifiers.org/registry/civic.sid" + }, { - "@id": "http://www.ontobee.org/ontology/MFOEM" + "@id": "https://registry.identifiers.org/registry/dbg2introns" }, { - "@id": "http://www.ontobee.org/ontology/GENEPIO" + "@id": "https://registry.identifiers.org/registry/grid" }, { - "@id": "http://www.ontobee.org/ontology/MI" + "@id": "https://registry.identifiers.org/registry/bioproject" }, { - "@id": "http://www.ontobee.org/ontology/OPMI" + "@id": "https://registry.identifiers.org/registry/cdpd" }, { - "@id": "http://www.ontobee.org/ontology/MCO" + "@id": "https://registry.identifiers.org/registry/multicellds.snapshot" }, { - "@id": "http://www.ontobee.org/ontology/ARO" + "@id": "https://registry.identifiers.org/registry/mw.project" }, { - "@id": "http://www.ontobee.org/ontology/FBcv" + "@id": "https://registry.identifiers.org/registry/rgd.qtl" }, { - "@id": "http://www.ontobee.org/ontology/HsapDv" + "@id": "https://registry.identifiers.org/registry/mesh" }, { - "@id": "http://www.ontobee.org/ontology/RBO" + "@id": "https://registry.identifiers.org/registry/dg.5b0d" }, { - "@id": "http://www.ontobee.org/ontology/OGSF" + "@id": "https://registry.identifiers.org/registry/uspto" }, { - "@id": "http://www.ontobee.org/ontology/MONDO" + "@id": "https://registry.identifiers.org/registry/cath.superfamily" }, { - "@id": "http://www.ontobee.org/ontology/ADO" + "@id": "https://registry.identifiers.org/registry/cgsc" }, { - "@id": "http://www.ontobee.org/ontology/BTO" + "@id": "https://registry.identifiers.org/registry/icdc" }, { - "@id": "http://www.ontobee.org/ontology/INO" + "@id": "https://registry.identifiers.org/registry/civic.did" }, { - "@id": "http://www.ontobee.org/ontology/BAO" + "@id": "https://registry.identifiers.org/registry/aftol.taxonomy" }, { - "@id": "http://www.ontobee.org/ontology/WBPhenotype" + "@id": "https://registry.identifiers.org/registry/chembl.target" }, { - "@id": "http://www.ontobee.org/ontology/ECOCORE" + "@id": "https://registry.identifiers.org/registry/unipathway.compound" }, { - "@id": "http://www.ontobee.org/ontology/CL" + "@id": "https://registry.identifiers.org/registry/pass2" }, { - "@id": "http://www.ontobee.org/ontology/ONS" + "@id": "https://registry.identifiers.org/registry/wikipathways" }, { - "@id": "http://www.ontobee.org/ontology/MRO" + "@id": "https://registry.identifiers.org/registry/gold.genome" }, { - "@id": "http://www.ontobee.org/ontology/TADS" + "@id": "https://registry.identifiers.org/registry/fungidb" }, { - "@id": "http://www.ontobee.org/ontology/CHMO" + "@id": "https://registry.identifiers.org/registry/gramene.qtl" }, { - "@id": "http://www.ontobee.org/ontology/ENVO" + "@id": "https://registry.identifiers.org/registry/idoo" + }, + { + "@id": "https://registry.identifiers.org/registry/bitterdb.cpd" + }, + { + "@id": "https://registry.identifiers.org/registry/dg.6vts" + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.disease" + }, + { + "@id": "https://registry.identifiers.org/registry/nmdc" + }, + { + "@id": "https://registry.identifiers.org/registry/comptox" + }, + { + "@id": "https://registry.identifiers.org/registry/knapsack" + }, + { + "@id": "https://registry.identifiers.org/registry/ror" + }, + { + "@id": "https://registry.identifiers.org/registry/wikidata" + }, + { + "@id": "https://registry.identifiers.org/registry/vegbank" }, { - "@id": "http://www.ontobee.org/ontology/PSDO" + "@id": "https://registry.identifiers.org/registry/panther.pthcmp" }, { - "@id": "http://www.ontobee.org/ontology/EFO" + "@id": "https://registry.identifiers.org/registry/atfdb.family" }, { - "@id": "http://www.ontobee.org/ontology/VBO" + "@id": "https://registry.identifiers.org/registry/pubchem.substance" }, { - "@id": "http://www.ontobee.org/ontology/WBbt" + "@id": "https://registry.identifiers.org/registry/dashr" }, { - "@id": "http://www.ontobee.org/ontology/UPA" + "@id": "https://registry.identifiers.org/registry/fairsharing" }, { - "@id": "http://www.ontobee.org/ontology/VIDO" + "@id": "https://registry.identifiers.org/registry/fplx" }, { - "@id": "http://www.ontobee.org/ontology/FOBI" + "@id": "https://registry.identifiers.org/registry/erv" }, { - "@id": "http://www.ontobee.org/ontology/MPATH" + "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways" }, { - "@id": "http://www.ontobee.org/ontology/OBA" + "@id": "https://registry.identifiers.org/registry/huge" }, { - "@id": "http://www.ontobee.org/ontology/PATO" + "@id": "https://registry.identifiers.org/registry/umbbd.rule" }, { - "@id": "http://www.ontobee.org/ontology/GEO" + "@id": "https://registry.identifiers.org/registry/wb.rnai" }, { - "@id": "http://www.ontobee.org/ontology/ZECO" + "@id": "https://registry.identifiers.org/registry/bto" }, { - "@id": "http://www.ontobee.org/ontology/DINTO" + "@id": "https://registry.identifiers.org/registry/mlc" }, { - "@id": "http://www.ontobee.org/ontology/RO" + "@id": "https://registry.identifiers.org/registry/vbrc" }, { - "@id": "http://www.ontobee.org/ontology/DISDRIV" + "@id": "https://registry.identifiers.org/registry/cadsr" }, { - "@id": "http://www.ontobee.org/ontology/EUPATH" + "@id": "https://registry.identifiers.org/registry/atcc" }, { - "@id": "http://www.ontobee.org/ontology/OBIB" + "@id": "https://registry.identifiers.org/registry/vmhgene" }, { - "@id": "http://www.ontobee.org/ontology/MOP" + "@id": "https://registry.identifiers.org/registry/lipidmaps" }, { - "@id": "http://www.ontobee.org/ontology/BSPO" + "@id": "https://registry.identifiers.org/registry/ensembl.metazoa" }, { - "@id": "http://www.ontobee.org/ontology/SIBO" + "@id": "https://registry.identifiers.org/registry/ctd.chemical" }, { - "@id": "http://www.ontobee.org/ontology/PdumDv" + "@id": "https://registry.identifiers.org/registry/3dmet" }, { - "@id": "http://www.ontobee.org/ontology/ECO" + "@id": "https://registry.identifiers.org/registry/gabi" }, { - "@id": "http://www.ontobee.org/ontology/BCGO" + "@id": "https://registry.identifiers.org/registry/giardiadb" }, { - "@id": "http://www.ontobee.org/ontology/PO" + "@id": "https://registry.identifiers.org/registry/kegg.reaction" }, { - "@id": "http://www.ontobee.org/ontology/TTO" + "@id": "https://registry.identifiers.org/registry/hinv.transcript" }, { - "@id": "http://www.ontobee.org/ontology/CTO" + "@id": "https://registry.identifiers.org/registry/pypi" }, { - "@id": "http://www.ontobee.org/ontology/CDNO" + "@id": "https://registry.identifiers.org/registry/chembl" }, { - "@id": "http://www.ontobee.org/ontology/CIDO" + "@id": "https://registry.identifiers.org/registry/lincs.protein" }, { - "@id": "http://www.ontobee.org/ontology/CMO" + "@id": "https://registry.identifiers.org/registry/ricegap" }, { - "@id": "http://www.ontobee.org/ontology/FBbi" + "@id": "https://registry.identifiers.org/registry/nextprot" }, { - "@id": "http://www.ontobee.org/ontology/BFO" + "@id": "https://registry.identifiers.org/registry/ligandexpo" }, { - "@id": "http://www.ontobee.org/ontology/IDO" + "@id": "https://registry.identifiers.org/registry/cldb" }, { - "@id": "http://www.ontobee.org/ontology/REO" + "@id": "https://registry.identifiers.org/registry/darc" }, { - "@id": "http://www.ontobee.org/ontology/APO" + "@id": "https://registry.identifiers.org/registry/dg.4503" }, { - "@id": "http://www.ontobee.org/ontology/FOODON" + "@id": "https://registry.identifiers.org/registry/pubchem.compound" }, { - "@id": "http://www.ontobee.org/ontology/CLAO" + "@id": "https://registry.identifiers.org/registry/gxa.expt" }, { - "@id": "http://www.ontobee.org/ontology/SWO" + "@id": "https://registry.identifiers.org/registry/t3db" }, { - "@id": "http://www.ontobee.org/ontology/GNO" + "@id": "https://registry.identifiers.org/registry/did" }, { - "@id": "http://www.ontobee.org/ontology/CLO" + "@id": "https://registry.identifiers.org/registry/pdb-ccd" }, { - "@id": "http://www.ontobee.org/ontology/EPO" + "@id": "https://registry.identifiers.org/registry/pfam" }, { - "@id": "http://www.ontobee.org/ontology/WBls" + "@id": "https://registry.identifiers.org/registry/glycoepitope" }, { - "@id": "http://www.ontobee.org/ontology/MF" + "@id": "https://registry.identifiers.org/registry/ecogene" }, { - "@id": "http://www.ontobee.org/ontology/XAO" + "@id": "https://registry.identifiers.org/registry/dictybase.gene" }, { - "@id": "http://www.ontobee.org/ontology/FLOPO" + "@id": "https://registry.identifiers.org/registry/img.taxon" }, { - "@id": "http://www.ontobee.org/ontology/OBI" + "@id": "https://registry.identifiers.org/registry/phosphosite.protein" }, { - "@id": "http://www.ontobee.org/ontology/PCO" + "@id": "https://registry.identifiers.org/registry/matrixdb.association" }, { - "@id": "http://www.ontobee.org/ontology/HAO" + "@id": "https://registry.identifiers.org/registry/dragondb.allele" }, { - "@id": "http://www.ontobee.org/ontology/T4FS" + "@id": "https://registry.identifiers.org/registry/mmrrc" }, { - "@id": "http://www.ontobee.org/ontology/FOVT" + "@id": "https://registry.identifiers.org/registry/insdc.cds" }, { - "@id": "http://www.ontobee.org/ontology/GAZ" + "@id": "https://registry.identifiers.org/registry/kegg" }, { - "@id": "http://www.ontobee.org/ontology/GECKO" + "@id": "https://registry.identifiers.org/registry/jstor" }, { - "@id": "http://www.ontobee.org/ontology/CHEMINF" + "@id": "https://registry.identifiers.org/registry/phosphosite.residue" }, { - "@id": "http://www.ontobee.org/ontology/MFOMD" + "@id": "https://registry.identifiers.org/registry/mge" }, { - "@id": "http://www.ontobee.org/ontology/EHDAA2" + "@id": "https://registry.identifiers.org/registry/encode" }, { - "@id": "http://www.ontobee.org/ontology/OMP" + "@id": "https://registry.identifiers.org/registry/doid" }, { - "@id": "http://www.ontobee.org/ontology/XLMOD" + "@id": "https://registry.identifiers.org/registry/sdbs" }, { - "@id": "http://www.ontobee.org/ontology/ECTO" + "@id": "https://registry.identifiers.org/registry/subtiwiki" }, { - "@id": "http://www.ontobee.org/ontology/PPO" + "@id": "https://registry.identifiers.org/registry/ncit" }, { - "@id": "http://www.ontobee.org/ontology/CHEBI" + "@id": "https://registry.identifiers.org/registry/gcst" }, { - "@id": "http://www.ontobee.org/ontology/MPIO" + "@id": "https://registry.identifiers.org/registry/mim" }, { - "@id": "http://www.ontobee.org/ontology/BCO" + "@id": "https://registry.identifiers.org/registry/mgi" }, { - "@id": "http://www.ontobee.org/ontology/ERO" + "@id": "https://registry.identifiers.org/registry/phosphopoint.protein" }, { - "@id": "http://www.ontobee.org/ontology/DPO" + "@id": "https://registry.identifiers.org/registry/oridb.schizo" }, { - "@id": "http://www.ontobee.org/ontology/NCBITaxon" + "@id": "https://registry.identifiers.org/registry/erm" }, { - "@id": "http://www.ontobee.org/ontology/SEPIO" + "@id": "https://registry.identifiers.org/registry/empiar" }, { - "@id": "http://www.ontobee.org/ontology/UBERON" + "@id": "https://registry.identifiers.org/registry/tritrypdb" }, { - "@id": "http://www.ontobee.org/ontology/OMIABIS" + "@id": "https://registry.identifiers.org/registry/jcm" }, { - "@id": "http://www.ontobee.org/ontology/CEPH" + "@id": "https://registry.identifiers.org/registry/epd" }, { - "@id": "http://www.ontobee.org/ontology/MA" + "@id": "https://registry.identifiers.org/registry/glida.ligand" }, { - "@id": "http://www.ontobee.org/ontology/GO" + "@id": "https://registry.identifiers.org/registry/swh" }, { - "@id": "http://www.ontobee.org/ontology/MICRO" + "@id": "https://registry.identifiers.org/registry/gudmap" }, { - "@id": "http://www.ontobee.org/ontology/ONTOAVIDA" + "@id": "https://registry.identifiers.org/registry/neurovault.image" }, { - "@id": "http://www.ontobee.org/ontology/MmusDv" + "@id": "https://registry.identifiers.org/registry/genatlas" }, { - "@id": "http://www.ontobee.org/ontology/VariO" + "@id": "https://registry.identifiers.org/registry/smart" }, { - "@id": "http://www.ontobee.org/ontology/PLANP" + "@id": "https://registry.identifiers.org/registry/resid" }, { - "@id": "http://www.ontobee.org/ontology/AEO" + "@id": "https://registry.identifiers.org/registry/sbo" }, { - "@id": "http://www.ontobee.org/ontology/NGBO" + "@id": "https://registry.identifiers.org/registry/worfdb" }, { - "@id": "http://www.ontobee.org/ontology/NOMEN" + "@id": "https://registry.identifiers.org/registry/rbk" }, { - "@id": "http://www.ontobee.org/ontology/OMIT" + "@id": "https://registry.identifiers.org/registry/imex" }, { - "@id": "http://www.ontobee.org/ontology/SCDO" + "@id": "https://registry.identifiers.org/registry/gpmdb" }, { - "@id": "http://www.ontobee.org/ontology/OPL" + "@id": "https://registry.identifiers.org/registry/degradome" }, { - "@id": "http://www.ontobee.org/ontology/PCL" + "@id": "https://registry.identifiers.org/registry/gmd.profile" }, { - "@id": "http://www.ontobee.org/ontology/MMO" + "@id": "https://registry.identifiers.org/registry/hgmd" }, { - "@id": "http://www.ontobee.org/ontology/REX" + "@id": "https://registry.identifiers.org/registry/kegg.metagenome" }, { - "@id": "http://www.ontobee.org/ontology/DDANAT" + "@id": "https://registry.identifiers.org/registry/panther.pathway" }, { - "@id": "http://www.ontobee.org/ontology/CDAO" + "@id": "https://registry.identifiers.org/registry/nextdb" }, { - "@id": "http://www.ontobee.org/ontology/OGG" + "@id": "https://registry.identifiers.org/registry/ccds" }, { - "@id": "http://www.ontobee.org/ontology/SDGIO" + "@id": "https://registry.identifiers.org/registry/biomodels.kisao" }, { - "@id": "http://www.ontobee.org/ontology/OMRSE" + "@id": "https://registry.identifiers.org/registry/obi" }, { - "@id": "http://www.ontobee.org/ontology/NDF-RT" + "@id": "https://registry.identifiers.org/registry/clinvar.submitter" }, { - "@id": "http://www.ontobee.org/ontology/PW" + "@id": "https://registry.identifiers.org/registry/gramene.taxonomy" }, { - "@id": "http://www.ontobee.org/ontology/KISAO" + "@id": "https://registry.identifiers.org/registry/nasc" }, { - "@id": "http://www.ontobee.org/ontology/AFO" + "@id": "https://registry.identifiers.org/registry/microscope" }, { - "@id": "http://www.ontobee.org/ontology/MCRO" + "@id": "https://registry.identifiers.org/registry/narcis" }, { - "@id": "http://www.ontobee.org/ontology/NCRO" + "@id": "https://registry.identifiers.org/registry/oridb.sacch" }, { - "@id": "http://www.ontobee.org/ontology/VTO" + "@id": "https://registry.identifiers.org/registry/oryzabase.mutant" }, { - "@id": "http://www.ontobee.org/ontology/OAE" + "@id": "https://registry.identifiers.org/registry/ito" }, { - "@id": "http://www.ontobee.org/ontology/RS" + "@id": "https://registry.identifiers.org/registry/pw" }, { - "@id": "http://www.ontobee.org/ontology/PSO" + "@id": "https://registry.identifiers.org/registry/mw.study" }, { - "@id": "http://www.ontobee.org/ontology/ZFS" + "@id": "https://registry.identifiers.org/registry/cryptodb" }, { - "@id": "http://www.ontobee.org/ontology/HANCESTRO" + "@id": "https://registry.identifiers.org/registry/sitex" }, { - "@id": "http://www.ontobee.org/ontology/PECO" + "@id": "https://registry.identifiers.org/registry/gramene.gene" }, { - "@id": "http://www.ontobee.org/ontology/XL" + "@id": "https://registry.identifiers.org/registry/kegg.genes" }, { - "@id": "http://www.ontobee.org/ontology/STATO" + "@id": "https://registry.identifiers.org/registry/ncbidrs" }, { - "@id": "http://www.ontobee.org/ontology/CARO" + "@id": "https://registry.identifiers.org/registry/snp2tfbs" }, { - "@id": "http://www.ontobee.org/ontology/ORNASEQ" + "@id": "https://registry.identifiers.org/registry/homd.seq" }, { - "@id": "http://www.ontobee.org/ontology/SYMP" + "@id": "https://registry.identifiers.org/registry/uniprot" }, { - "@id": "http://www.ontobee.org/ontology/ECAO" + "@id": "https://registry.identifiers.org/registry/fsnp" }, { - "@id": "http://www.ontobee.org/ontology/SEP" + "@id": "https://registry.identifiers.org/registry/echobase" }, { - "@id": "http://www.ontobee.org/ontology/UPHENO" + "@id": "https://registry.identifiers.org/registry/efo" }, { - "@id": "http://www.ontobee.org/ontology/FBdv" + "@id": "https://registry.identifiers.org/registry/sedml.format" }, { - "@id": "http://www.ontobee.org/ontology/VT" + "@id": "https://registry.identifiers.org/registry/paxdb.protein" }, { - "@id": "http://www.ontobee.org/ontology/MP" + "@id": "https://registry.identifiers.org/registry/bionumbers" }, { - "@id": "http://www.ontobee.org/ontology/ICEO" + "@id": "https://registry.identifiers.org/registry/dg.4dfc" }, { - "@id": "http://www.ontobee.org/ontology/EMAPA" + "@id": "https://registry.identifiers.org/registry/minid" }, { - "@id": "http://www.ontobee.org/ontology/CTENO" + "@id": "https://registry.identifiers.org/registry/molmedb" }, { - "@id": "http://www.ontobee.org/ontology/PLANA" + "@id": "https://registry.identifiers.org/registry/nuclearbd" }, { - "@id": "http://www.ontobee.org/ontology/OVAE" + "@id": "https://registry.identifiers.org/registry/prints" }, { - "@id": "http://www.ontobee.org/ontology/FMA" + "@id": "https://registry.identifiers.org/registry/bgee.organ" }, { - "@id": "http://www.ontobee.org/ontology/OGMS" + "@id": "https://registry.identifiers.org/registry/rgd" }, { - "@id": "http://www.ontobee.org/ontology/miRNAO" + "@id": "https://registry.identifiers.org/registry/funcbase.yeast" }, { - "@id": "http://www.ontobee.org/ontology/PORO" + "@id": "https://registry.identifiers.org/registry/mipmod" }, { - "@id": "http://www.ontobee.org/ontology/ZP" + "@id": "https://registry.identifiers.org/registry/autdb" }, { - "@id": "http://www.ontobee.org/ontology/AGRO" + "@id": "https://registry.identifiers.org/registry/elm" }, { - "@id": "http://www.ontobee.org/ontology/HP" + "@id": "https://registry.identifiers.org/registry/genewiki" }, { - "@id": "http://www.ontobee.org/ontology/APOLLO_SV" + "@id": "https://registry.identifiers.org/registry/cath.domain" }, { - "@id": "http://www.ontobee.org/ontology/ICO" + "@id": "https://registry.identifiers.org/registry/arrayexpress" }, { - "@id": "http://www.ontobee.org/ontology/AMPHX" + "@id": "https://registry.identifiers.org/registry/dbest" }, { - "@id": "http://www.ontobee.org/ontology/ONTONEO" + "@id": "https://registry.identifiers.org/registry/hdr" }, { - "@id": "http://www.ontobee.org/ontology/TGMA" + "@id": "https://registry.identifiers.org/registry/massbank" }, { - "@id": "http://www.ontobee.org/ontology/MIRO" + "@id": "https://registry.identifiers.org/registry/signor" }, { - "@id": "http://www.ontobee.org/ontology/SBO" + "@id": "https://registry.identifiers.org/registry/homologene" }, { - "@id": "http://www.ontobee.org/ontology/IDOMAL" + "@id": "https://registry.identifiers.org/registry/dragondb.locus" }, { - "@id": "http://www.ontobee.org/ontology/HTN" + "@id": "https://registry.identifiers.org/registry/swiss-model" }, { - "@id": "http://www.ontobee.org/ontology/XCO" + "@id": "https://registry.identifiers.org/registry/chemspider" }, { - "@id": "http://www.ontobee.org/ontology/DIDEO" + "@id": "https://registry.identifiers.org/registry/dbd" }, { - "@id": "http://www.ontobee.org/ontology/SPD" + "@id": "https://registry.identifiers.org/registry/bigg.metabolite" }, { - "@id": "http://www.ontobee.org/ontology/FIDEO" + "@id": "https://registry.identifiers.org/registry/apid.interactions" }, { - "@id": "http://www.ontobee.org/ontology/FAO" + "@id": "https://registry.identifiers.org/registry/envipath" }, { - "@id": "http://www.ontobee.org/ontology/HSO" + "@id": "https://registry.identifiers.org/registry/ricenetdb.compound" }, { - "@id": "http://www.ontobee.org/ontology/FIX" + "@id": "https://registry.identifiers.org/registry/gold.meta" }, { - "@id": "http://www.ontobee.org/ontology/OBCS" + "@id": "https://registry.identifiers.org/registry/cco" }, { - "@id": "http://www.ontobee.org/ontology/MOD" + "@id": "https://registry.identifiers.org/registry/dip" }, { - "@id": "http://www.ontobee.org/ontology/EPIO" + "@id": "https://registry.identifiers.org/registry/pmap.cutdb" }, { - "@id": "http://www.ontobee.org/ontology/OOSTT" + "@id": "https://registry.identifiers.org/registry/repeatsdb.structure" }, { - "@id": "http://www.ontobee.org/ontology/SO" + "@id": "https://registry.identifiers.org/registry/unimod" }, { - "@id": "http://www.ontobee.org/ontology/COLAO" + "@id": "https://registry.identifiers.org/registry/refseq" }, { - "@id": "http://www.ontobee.org/ontology/EDAM" + "@id": "https://registry.identifiers.org/registry/foodb.compound" }, { - "@id": "http://www.ontobee.org/ontology/GSSO" + "@id": "https://registry.identifiers.org/registry/pmp" }, { - "@id": "http://www.ontobee.org/ontology/OHD" + "@id": "https://registry.identifiers.org/registry/splash" }, { - "@id": "http://www.ontobee.org/ontology/VO" + "@id": "https://registry.identifiers.org/registry/ligandbox" }, { - "@id": "http://www.ontobee.org/ontology/DOID" + "@id": "https://registry.identifiers.org/registry/gdsc" }, { - "@id": "http://www.ontobee.org/ontology/LEPAO" + "@id": "https://registry.identifiers.org/registry/tarbase" }, { - "@id": "http://www.ontobee.org/ontology/SIO" + "@id": "https://registry.identifiers.org/registry/ped.ensemble" }, { - "@id": "http://www.ontobee.org/ontology/TRANS" + "@id": "https://registry.identifiers.org/registry/mirbase" }, { - "@id": "http://www.ontobee.org/ontology/RNAO" + "@id": "https://registry.identifiers.org/registry/multicellds.cell_line" }, { - "@id": "http://www.ontobee.org/ontology/CIO" + "@id": "https://registry.identifiers.org/registry/spike.map" }, { - "@id": "http://www.ontobee.org/ontology/XPO" + "@id": "https://registry.identifiers.org/registry/biosimulators" }, { - "@id": "http://www.ontobee.org/ontology/IAO" + "@id": "https://registry.identifiers.org/registry/mir" }, { - "@id": "http://www.ontobee.org/ontology/MIAPA" + "@id": "https://registry.identifiers.org/registry/smpdb" }, { - "@id": "http://www.ontobee.org/ontology/FYPO" + "@id": "https://registry.identifiers.org/registry/dbgap" }, { - "@id": "http://www.ontobee.org/ontology/CHIRO" + "@id": "https://registry.identifiers.org/registry/sgd.pathways" }, { - "@id": "http://www.ontobee.org/ontology/LABO" + "@id": "https://registry.identifiers.org/registry/qtldb" }, { - "@id": "http://www.ontobee.org/ontology/UO" + "@id": "https://registry.identifiers.org/registry/yrcpdr" }, { - "@id": "http://www.ontobee.org/ontology/PR" + "@id": "https://registry.identifiers.org/registry/pscdb" }, { - "@id": "http://www.ontobee.org/ontology/EPSO" + "@id": "https://registry.identifiers.org/registry/aop.events" }, { - "@id": "http://www.ontobee.org/ontology/CMF" + "@id": "https://registry.identifiers.org/registry/mesh.2013" }, { - "@id": "http://www.ontobee.org/ontology/ZFA" + "@id": "https://registry.identifiers.org/registry/uniparc" }, { - "@id": "http://www.ontobee.org/ontology/OARCS" + "@id": "https://registry.identifiers.org/registry/kegg.pathway" }, { - "@id": "http://www.ontobee.org/ontology/CLYH" + "@id": "https://registry.identifiers.org/registry/po" }, { - "@id": "http://www.ontobee.org/ontology/ExO" + "@id": "https://registry.identifiers.org/registry/px" }, { - "@id": "http://www.ontobee.org/ontology/FBbt" + "@id": "https://registry.identifiers.org/registry/grin.taxonomy" }, { - "@id": "http://www.ontobee.org/ontology/PROCO" + "@id": "https://registry.identifiers.org/registry/transyt" }, { - "@id": "http://www.ontobee.org/ontology/DDPHENO" + "@id": "https://registry.identifiers.org/registry/bigg.reaction" }, { - "@id": "http://www.ontobee.org/ontology/CVDO" + "@id": "https://registry.identifiers.org/registry/drugbank" }, { - "@id": "http://www.ontobee.org/ontology/TXPO" + "@id": "https://registry.identifiers.org/registry/homd.taxon" }, { - "@id": "http://www.ontobee.org/ontology/MS" + "@id": "https://registry.identifiers.org/registry/bdgp.insertion" }, { - "@id": "http://www.ontobee.org/ontology/OMO" + "@id": "https://registry.identifiers.org/registry/ecoliwiki" }, { - "@id": "http://www.ontobee.org/ontology/RXNO" + "@id": "https://registry.identifiers.org/registry/odc.sci" }, { - "@id": "http://www.ontobee.org/ontology/ONE" + "@id": "https://registry.identifiers.org/registry/arxiv" }, { - "@id": "http://www.ontobee.org/ontology/DUO" + "@id": "https://registry.identifiers.org/registry/sheepqtldb" }, { - "@id": "http://www.ontobee.org/ontology/OGI" + "@id": "https://registry.identifiers.org/registry/oryzabase.strain" }, { - "@id": "http://www.ontobee.org/ontology/TO" + "@id": "https://registry.identifiers.org/registry/pharmgkb.gene" }, { - "@id": "http://www.ontobee.org/ontology/NBO" + "@id": "https://registry.identifiers.org/registry/lgic" }, { - "@id": "http://www.ontobee.org/ontology/AISM" + "@id": "https://registry.identifiers.org/registry/crop2ml" }, { - "@id": "http://www.ontobee.org/ontology/PDRO" + "@id": "https://registry.identifiers.org/registry/metatlas" }, { - "@id": "http://www.ontobee.org/ontology/OHMI" + "@id": "https://registry.identifiers.org/registry/cgd" }, { - "@id": "http://www.ontobee.org/ontology/MFMO" + "@id": "https://registry.identifiers.org/registry/civic.tid" }, { - "@id": "http://www.ontobee.org/ontology/GENO" + "@id": "https://registry.identifiers.org/registry/pina" }, { - "@id": "http://www.ontobee.org/ontology/PHIPO" + "@id": "https://registry.identifiers.org/registry/phytozome.locus" }, { - "@id": "http://www.ontobee.org/ontology/MAXO" + "@id": "https://registry.identifiers.org/registry/miriam.collection" }, { - "@id": "http://www.ontobee.org/ontology/CRO" + "@id": "https://registry.identifiers.org/registry/igsn" }, { - "@id": "http://www.ontobee.org/ontology/COB" + "@id": "https://registry.identifiers.org/registry/mo" }, { - "@id": "http://www.ontobee.org/ontology/DRON" + "@id": "https://registry.identifiers.org/registry/kegg.orthology" }, { - "@id": "http://www.ontobee.org/ontology/TAXRANK" + "@id": "https://registry.identifiers.org/registry/myco.lepra" }, { - "@id": "http://www.ontobee.org/ontology/HOM" + "@id": "https://registry.identifiers.org/registry/pmr" }, { - "@id": "http://www.ontobee.org/ontology/MAMO" + "@id": "https://registry.identifiers.org/registry/protclustdb" }, { - "@id": "http://www.ontobee.org/ontology/OHPI" + "@id": "https://registry.identifiers.org/registry/bacdive" }, { - "@id": "http://www.ontobee.org/ontology/OlatDv" + "@id": "https://registry.identifiers.org/registry/hovergen" }, { - "@id": "http://www.ontobee.org/ontology/NCIT" + "@id": "https://registry.identifiers.org/registry/nando" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OntoBee" + "@value": "Identifiers.org" }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "http://www.ontobee.org/" + "@value": "https://identifiers.org" }, "https://bioregistry.io/schema/#0000005": { - "@value": "AGRO" + "@value": "chebi" }, "https://bioregistry.io/schema/#0000006": { - "@value": "http://www.ontobee.org/ontology/$1" + "@value": "https://registry.identifiers.org/registry/$1" }, "https://bioregistry.io/schema/#0000007": { - "@value": "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" + "@value": "https://identifiers.org/$1:$2" }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "@id": "https://orcid.org/0000-0001-8479-0262" } }, { - "@id": "https://registry.identifiers.org/registry/ricegap", + "@id": "https://registry.identifiers.org/registry/unii", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.INSERTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.PROTEIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pombase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bartoc.org/en/node/109", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi", + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.GCA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/sharkipedia.species", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/sharkipedia" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sharkipedia/sharkipedia" - }, + "@id": "https://orcid.org/0000-0001-9018-4680", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sharkipedia Species" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.sharkipedia.org/" - }, - "https://bioregistry.io/schema/#0000005": "983", - "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/species/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1710-8256" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/species/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.sharkipedia.org/species/983" + "@value": "Alistair Miles" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sharkipedia.species" - } - }, - { - "@id": "http://www.ontobee.org/ontology/PSDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6tgyxf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMOLOGENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "alistair.miles@linacre.ox.ac.uk" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbest", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.ligand", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/mirnao", + "@id": "https://www.re3data.org/repository/r3d100012702", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/smpdb", + "@id": "https://bioportal.bioontology.org/ontologies/NOMEN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIMOD", + "@id": "http://edamontology.org/data_1004", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb", + "@id": "https://registry.bio2kg.org/resource/protonet.proteincard", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/vso", + "@id": "https://bioregistry.io/registry/astd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. ", + "http://purl.org/dc/terms/description": "Identifier of an object from the ASTD database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vital Sign Ontology" + "@value": "ASTD" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/VSO" - }, - { - "@id": "https://registry.bio2kg.org/resource/vso" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VSO" + "@id": "https://registry.bio2kg.org/resource/astd" }, { - "@id": "https://fairsharing.org/FAIRsharing.jjb2p2" + "@id": "http://edamontology.org/data_2367" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "health" - }, - { - "@value": "ontology" - }, - { - "@value": "biomedical science" + "@value": "alternative splicing" }, { - "@value": "owl" + "@value": "transcript" }, { - "@value": "health science" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/VSO" - }, - "https://bioregistry.io/schema/#0000005": "0000041", - "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/VSO/1/vso.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nfb9e4277d5bc487682344f95beae248e" - }, - "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_0000041" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vso" - } - }, - { - "@id": "_:Nfb9e4277d5bc487682344f95beae248e", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Albert Goldfain" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "albertgoldfain@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/jws", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://www.ebi.ac.uk/astd/" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "JWS Online" + "https://bioregistry.io/schema/#0000005": "ENSG00000136147", + "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/astd/geneview.html?acc=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ensembl" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws" - }, - { - "@id": "https://registry.bio2kg.org/resource/jws" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JWS" - }, - { - "@id": "https://registry.identifiers.org/registry/jws" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "pathway" - }, - { - "@value": "model" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://jjj.biochem.sun.ac.za/models/" + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000005": "achcar11", - "https://bioregistry.io/schema/#0000006": "https://jjj.bio.vu.nl/models/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://jjj.bio.vu.nl/models/", + "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/astd/geneview.html?acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://jjj.bio.vu.nl/models/achcar11" + "@id": "http://www.ebi.ac.uk/astd/geneview.html?acc=ENSG00000136147" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jws" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "astd" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs", + "@id": "https://bioregistry.io/metaregistry/biocontext/MEROPS.INHIBITOR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.35e1c3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dashr.expression", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.w4x6n4", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/MONDO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/inaturalist.user", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier for a user in iNaturalist", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "iNaturalist User" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "person" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.inaturalist.org/users" - }, - "https://bioregistry.io/schema/#0000005": "1426686", - "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/users/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/users/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.inaturalist.org/users/1426686" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "inaturalist.user" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/neuromorpho", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010889", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.identifiers.org/registry/genefarm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/peroxibase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_325", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9y8f0n", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.nx58jg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.drug", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/tao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_2628", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://www.wikidata.org/entity/P493", + "@id": "http://www.wikidata.org/entity/P7471", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/FOODON", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ro", + "@id": "https://registry.identifiers.org/registry/mex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MI", + "@id": "http://www.wikidata.org/entity/P685", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://orcid.org/0000-0001-8910-9851", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lynn Schriml" - }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "lynn.schriml@gmail.com" - }, - { - "@value": "lschriml@som.umaryland.edu" - } - ] - }, - { - "@id": "https://registry.bio2kg.org/resource/pazar", + "@id": "https://fairsharing.org/FAIRsharing.a5sv8m", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/zeco", + "@id": "https://bioregistry.io/registry/glida.ligand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontology of Zebrafish Experimental Conditions", + "http://purl.org/dc/terms/description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zebrafish Experimental Conditions Ontology" + "@value": "GLIDA Ligand" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/zeco" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZECO" - }, - { - "@id": "http://aber-owl.net/ontology/ZECO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.np2wfz" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZECO" - }, - { - "@id": "http://www.ontobee.org/ontology/ZECO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "animal physiology" + "@id": "https://registry.identifiers.org/registry/glida.ligand" }, { - "@value": "genomics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand" }, { - "@value": "genetics" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ybradford/zebrafish-experimental-conditions-ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000171", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZECO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/zeco.owl" + "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/" }, + "https://bioregistry.io/schema/#0000005": "L000001", + "https://bioregistry.io/schema/#0000006": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^L\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mco" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9900-7880" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZECO_", + "https://bioregistry.io/schema/#0000024": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ZECO_0000171" + "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=L000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "zeco" + "@value": "glida.ligand" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kbz5jh", + "@id": "https://registry.identifiers.org/registry/vbrc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/sphn", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/).", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Swiss Personalized Health Network Schema" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.sphn.ch" - }, - "https://bioregistry.io/schema/#0000005": "Allergy", - "https://bioregistry.io/schema/#0000006": "https://biomedit.ch/rdf/sphn-ontology/sphn#$1", - "https://bioregistry.io/schema/#0000008": "^\\S+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://git.dcc.sib.swiss/sphn-semantic-framework/sphn-ontology/-/raw/master/rdf_schema/sphn_rdf_schema.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3248-7899" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://biomedit.ch/rdf/sphn-ontology/sphn#", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biomedit.ch/rdf/sphn-ontology/sphn#Allergy" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sphn" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/t3db", + "@id": "https://www.re3data.org/repository/r3d100013060", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/hprd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.", + "http://purl.org/dc/terms/description": "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Toxin and Toxin Target Database" + "@value": "Human Protein Reference Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/t3db" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db" + "@id": "https://fairsharing.org/FAIRsharing.y2qws7" }, { - "@id": "https://registry.bio2kg.org/resource/t3db" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPRD" }, { - "@id": "https://fairsharing.org/FAIRsharing.psn0h2" + "@id": "https://registry.identifiers.org/registry/hprd" }, { - "@id": "https://www.re3data.org/repository/r3d100012189" + "@id": "https://www.re3data.org/repository/r3d100010978" }, { - "@id": "http://edamontology.org/data_2662" + "@id": "https://registry.bio2kg.org/resource/hprd" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, - { - "@value": "molecule" + "@value": "protein" }, { - "@value": "protein" + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.t3db.org/" + "@id": "http://www.hprd.org/" }, - "https://bioregistry.io/schema/#0000005": "T3D0001", - "https://bioregistry.io/schema/#0000006": "http://www.t3db.org/toxins/$1", - "https://bioregistry.io/schema/#0000008": "^T3D\\d+$", + "https://bioregistry.io/schema/#0000005": "00001", + "https://bioregistry.io/schema/#0000006": "http://www.hprd.org/protein/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3207-2434" + "@id": "https://orcid.org/0000-0001-9943-6127" }, - "https://bioregistry.io/schema/#0000024": "http://www.t3db.org/toxins/", + "https://bioregistry.io/schema/#0000024": "http://www.hprd.org/protein/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.t3db.org/toxins/T3D0001" + "@id": "http://www.hprd.org/protein/00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "t3db" + "@value": "hprd" } }, { - "@id": "https://fairsharing.org/FAIRsharing.gkw1w8", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://fairsharing.org/FAIRsharing.g7t2hv", + "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENATLAS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.wikidata.org/entity/P7963", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/bgee.gene", + "@id": "https://bioregistry.io/registry/ricenetdb.compound", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.", + "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bgee gene" + "@value": "RiceNetDB Compound" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE" - }, - { - "@id": "https://registry.identifiers.org/registry/bgee.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.COMPOUND" }, { - "@id": "https://registry.bio2kg.org/resource/bgee" + "@id": "https://registry.identifiers.org/registry/ricenetdb.compound" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound" } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "gene expression" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.bgee.org" - }, - "https://bioregistry.io/schema/#0000005": "FBgn0000015", - "https://bioregistry.io/schema/#0000006": "https://www.bgee.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3947-488X" + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bis.zju.edu.cn/ricenetdb" }, - "https://bioregistry.io/schema/#0000024": "https://www.bgee.org/gene/", + "https://bioregistry.io/schema/#0000005": "OSC1416", + "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^OSC\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.bgee.org/gene/FBgn0000015" + "@id": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=OSC1416" }, "https://bioregistry.io/schema/#0000029": { - "@value": "bgee.gene" + "@value": "ricenetdb.compound" } }, { - "@id": "https://bioregistry.io/registry/mimodb", + "@id": "https://bioregistry.io/registry/genprop", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank.", + "http://purl.org/dc/terms/description": "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MimoDB" + "@value": "Genome Properties" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB" + "@id": "https://registry.identifiers.org/registry/genprop" }, { - "@id": "https://registry.identifiers.org/registry/mimodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPROP" }, { - "@id": "https://registry.bio2kg.org/resource/mimodb" + "@id": "https://registry.bio2kg.org/resource/jcvi.genprop" }, { - "@id": "https://fairsharing.org/FAIRsharing.bv0zjz" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genprop" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" - }, - { - "@value": "interaction" + "@value": "genome" }, { - "@value": "life science" + "@value": "classification" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://immunet.cn/bdb/" + "@id": "https://www.ebi.ac.uk/interpro/genomeproperties/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "http://immunet.cn/bdb/index.php/mimoset/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "GenProp0699", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/interpro/genomeproperties/#$1", + "https://bioregistry.io/schema/#0000008": "^GenProp\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://immunet.cn/bdb/index.php/mimoset/", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/interpro/genomeproperties/#", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "http://immunet.cn/bdb/index.php/mimoset/1" + "@id": "https://www.ebi.ac.uk/interpro/genomeproperties/#GenProp0699" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mimodb" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/hcv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "genprop" } }, { - "@id": "https://www.obofoundry.org/ontology/ohpi", + "@id": "https://www.re3data.org/repository/r3d100011195", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.disease", + "@id": "https://registry.bio2kg.org/resource/chembank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SEP", + "@id": "https://bioregistry.io/metaregistry/biocontext/MMDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio", + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/hinv.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/schema/#0000006", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "H-InvDb Protein" + "@value": "has provider formatter" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "https://registry.identifiers.org/registry/hinv.protein" + "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN" + "@id": "http://identifiers.org/idot/accessPattern" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.protein" + "@id": "http://www.wikidata.org/entity/P1630" } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" - }, - "https://bioregistry.io/schema/#0000005": "HIP000030660", - "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1", - "https://bioregistry.io/schema/#0000008": "^HIP\\d{9}(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=HIP000030660" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "hinv.protein" + ] + }, + { + "@id": "https://fairsharing.org/FAIRsharing.egv2cz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/ecyano.rule", + "@id": "https://bioregistry.io/registry/biopixie", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/ecyano" - } - ], + "http://purl.org/dc/terms/description": "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "E-cyanobacterium rule" + "@value": "biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/ecyano.rule" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/biopixie" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule" + "@value": "interaction" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE" + "@value": "gene" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.e-cyanobacterium.org/bcs/rule/" + "@id": "http://pixie.princeton.edu/pixie/" }, - "https://bioregistry.io/schema/#0000005": "56", - "https://bioregistry.io/schema/#0000006": "https://e-cyanobacterium.org/bcs/rule/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://e-cyanobacterium.org/bcs/rule/", + "https://bioregistry.io/schema/#0000005": "12", + "https://bioregistry.io/schema/#0000006": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://e-cyanobacterium.org/bcs/rule/56" + "@id": "http://avis.princeton.edu/pixie/viewgraph.php?graphID=12" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecyano.rule" + "@value": "biopixie" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite", + "@id": "https://bioportal.bioontology.org/ontologies/VIDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARACHNOSERVER", + "@id": "https://fairsharing.org/FAIRsharing.f1777e", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/gmd.ref", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM", + "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.uniprot.org/database/DB-0129", + "@id": "https://fairsharing.org/FAIRsharing.cnwx8c", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/hdr", + "@id": "http://aber-owl.net/ontology/COVID19", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/comptox", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders.", + "http://purl.org/dc/terms/description": "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Homeodomain Research" + "@value": "DSSTox substance" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/HDR" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/comptox" }, { - "@id": "https://registry.bio2kg.org/resource/hdr" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPTOX" }, { - "@id": "https://registry.identifiers.org/registry/hdr" + "@id": "https://registry.identifiers.org/registry/comptox" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr" + "@id": "http://www.wikidata.org/entity/P3117" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://comptox.epa.gov/dashboard" + }, + "https://bioregistry.io/schema/#0000005": "DTXSID2021028", + "https://bioregistry.io/schema/#0000006": "https://comptox.epa.gov/dashboard/$1", + "https://bioregistry.io/schema/#0000008": "^DTXSID\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://comptox.epa.gov/dashboard/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://comptox.epa.gov/dashboard/DTXSID2021028" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "comptox" + } + }, + { + "@id": "https://bioregistry.io/registry/omim.ps", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/omim" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OMIM Phenotypic Series" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://research.nhgri.nih.gov/apps/homeodomain/web/" + "@id": "https://www.omim.org/phenotypicSeriesTitles/all" }, - "https://bioregistry.io/schema/#0000005": "63", - "https://bioregistry.io/schema/#0000006": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1", + "https://bioregistry.io/schema/#0000005": "214100", + "https://bioregistry.io/schema/#0000006": "https://omim.org/MIM:PS$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1780-5230" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "mim.ps" + }, + { + "@value": "MIMPS" + }, + { + "@value": "OMIMPS" + }, + { + "@value": "PS" + } + ], + "https://bioregistry.io/schema/#0000024": "https://omim.org/MIM:PS", "https://bioregistry.io/schema/#0000027": { - "@id": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=63" + "@id": "https://omim.org/MIM:PS214100" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hdr" + "@value": "omim.ps" } }, { - "@id": "https://registry.identifiers.org/registry/ecyano.experiment", + "@id": "https://bioregistry.io/metaregistry/biocontext/REX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/crisprdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/uniprot.journal", + "@id": "https://bioregistry.io/registry/edam.format", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for a scientific journal, in the UniProt database", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://purl.org/dc/terms/description": "A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/edam" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/edamontology/edamontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt journal" + "@value": "EDAM Format" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P4616" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/journals" + "@id": "http://edamontology.org" + }, + "https://bioregistry.io/schema/#0000005": "1915", + "https://bioregistry.io/schema/#0000006": "http://edamontology.org/format_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" }, - "https://bioregistry.io/schema/#0000005": "3546", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/journals/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/journals/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1509-4981" + }, + "https://bioregistry.io/schema/#0000024": "http://edamontology.org/format_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/journals/3546" + "@id": "http://edamontology.org/format_1915" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.journal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P11198", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@value": "edam.format" } }, { - "@id": "https://bioregistry.io/registry/isfinder", + "@id": "https://bioregistry.io/registry/lepao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available.", + "http://purl.org/dc/terms/description": "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/insect-morphology/lepao" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Insertion sequence elements database" + "@value": "Lepidoptera Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISFINDER" + "@id": "http://www.ontobee.org/ontology/LEPAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.xhpc3h" + "@id": "https://bioportal.bioontology.org/ontologies/LEPAO" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ISFinder" + "@id": "https://www.obofoundry.org/ontology/lepao" }, { - "@id": "https://registry.bio2kg.org/resource/isfinder" + "@id": "http://aber-owl.net/ontology/LEPAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/isfinder" + "@value": "obo" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/insect-morphology/lepao" + }, + "https://bioregistry.io/schema/#0000005": "0000005", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LEPAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/lepao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@value": "life science" + "@id": "https://bioregistry.io/registry/aism" }, { - "@value": "gene" + "@id": "https://bioregistry.io/registry/ro" }, { - "@value": "sequence" + "@id": "https://bioregistry.io/registry/caro" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + }, + { + "@id": "https://bioregistry.io/registry/bspo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www-is.biotoul.fr/i" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9136-9932" }, - "https://bioregistry.io/schema/#0000005": "ISA1083-2", - "https://bioregistry.io/schema/#0000006": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1", - "https://bioregistry.io/schema/#0000008": "^IS\\w+(\\-\\d)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LEPAO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=ISA1083-2" + "@id": "http://purl.obolibrary.org/obo/LEPAO_0000005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "isfinder" + "@value": "lepao" } }, { - "@id": "http://edamontology.org/data_1177", + "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.RECORD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mir", + "@id": "https://www.obofoundry.org/ontology/mco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/mirtarbase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources.", + "http://purl.org/dc/terms/description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Identifiers.org Registry" + "@value": "mirTarBase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIR" + "@id": "http://www.wikidata.org/entity/P2646" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mir" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRTARBASE" }, { - "@id": "https://registry.identifiers.org/registry/mir" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase" + }, + { + "@id": "https://registry.identifiers.org/registry/mirtarbase" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.f0bxfg" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://registry.identifiers.org/registry" + "@id": "https://mirtarbase.cuhk.edu.cn/" }, - "https://bioregistry.io/schema/#0000005": "00100037", - "https://bioregistry.io/schema/#0000006": "https://registry.identifiers.org/registry?query=MIR:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "MIRT000002", + "https://bioregistry.io/schema/#0000006": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1", + "https://bioregistry.io/schema/#0000008": "^MIRT\\d{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://registry.identifiers.org/registry?query=MIR:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8214-1696" + }, + "https://bioregistry.io/schema/#0000024": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://registry.identifiers.org/registry?query=MIR:00100037" + "@id": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=MIRT000002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mir" + "@value": "mirtarbase" } }, { - "@id": "http://www.ontobee.org/ontology/EPSO", + "@id": "https://registry.bio2kg.org/resource/dbprobe", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dpkb5f", + "@id": "https://registry.bio2kg.org/resource/rnao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/cryptodb", + "@id": "https://orcid.org/0000-0003-3562-7869", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "General Enquiries" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "depod@embl.de" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mmdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ido", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases.", + "@id": "http://www.ontobee.org/ontology/NCIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/infectious-disease-ontology/infectious-disease-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Infectious Disease Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.aae3v6" - }, - { - "@id": "http://www.ontobee.org/ontology/IDO" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ido" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/IDO" - }, - { - "@id": "http://aber-owl.net/ontology/IDO" - }, - { - "@id": "https://registry.identifiers.org/registry/ido" - }, + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://orcid.org/0000-0002-7356-1779", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDO" + "@id": "https://bioregistry.io/registry/pav" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido" + "@id": "https://bioregistry.io/registry/babelon" }, { - "@id": "https://www.obofoundry.org/ontology/ido" + "@id": "https://bioregistry.io/registry/sssom" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nicolas Matentzoglu" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "nicolas.matentzoglu@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/doqcs", + "http://purl.org/dc/terms/hasPart": [ { - "@value": "obo" + "@id": "https://bioregistry.io/registry/doqcs.pathway" }, { - "@value": "ontology" - }, + "@id": "https://bioregistry.io/registry/doqcs.model" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/vfdb.genus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VFDB Genus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/vfdb.genus" }, { - "@value": "molecular infection biology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology" - }, - "https://bioregistry.io/schema/#0000005": "0000504", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IDO_$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ido.owl" + "@id": "http://www.mgc.ac.cn/VFs/" }, + "https://bioregistry.io/schema/#0000005": "Chlamydia", + "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1617-8244" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IDO_", + "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/IDO_0000504" + "@id": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=Chlamydia" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ido" + "@value": "vfdb.genus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat", + "@id": "https://cropontology.org/ontology/CO_337", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/door", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes.", + "@id": "http://aber-owl.net/ontology/EPSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database for Prokaryotic Operons" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.re3data.org/repository/r3d100014113" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/door" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR" - }, + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEMBL-Targets", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012152", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "http://www.wikidata.org/entity/P7333", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhmetabolite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-6443-9376", + "http://www.w3.org/2000/01/rdf-schema#label": [ { - "@id": "https://registry.bio2kg.org/resource/door" + "@value": "Jennifer R Smith" }, { - "@id": "https://registry.identifiers.org/registry/door" + "@value": "Jennifer Smith" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://csbl.bmb.uga.edu/DOOR/operon.php" - }, - "https://bioregistry.io/schema/#0000005": "1398574", - "https://bioregistry.io/schema/#0000006": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=1398574" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "door" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jrsmith@mcw.edu" } }, { - "@id": "https://registry.identifiers.org/registry/gdsc", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asin", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GNO", + "@id": "https://bioportal.bioontology.org/ontologies/IDODEN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph", + "@id": "https://fairsharing.org/FAIRsharing.3xwMon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/cellrepo", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.cds", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Version Control Repository" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/cellrepo" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cellrepo.ico2s.org/" - }, - "https://bioregistry.io/schema/#0000005": "82", - "https://bioregistry.io/schema/#0000006": "https://cellrepo.ico2s.org/repositories/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cellrepo.ico2s.org/repositories/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cellrepo.ico2s.org/repositories/82" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cellrepo" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/co_334", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016", + "@id": "https://registry.bio2kg.org/resource/flybase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/srao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/fairsharing" + } + ], "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" + "@id": "https://github.com/FAIRsharing/subject-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cassava ontology" + "@value": "FAIRsharing Subject Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_334" + "@id": "https://fairsharing.org/FAIRsharing.b1xD9f" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "topics" }, { - "@id": "https://fairsharing.org/FAIRsharing.v06c4q" + "@value": "metascience" }, { - "@id": "https://cropontology.org/ontology/CO_334" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@value": "earth science" + }, { - "@value": "nutritional science" + "@value": "environmental science" }, { - "@value": "agriculture" + "@value": "biomedical science" }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "life science" + }, + { + "@value": "computer science" + }, + { + "@value": "agriculture" + }, + { + "@value": "humanities" + }, + { + "@value": "natural science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_334/Cassava" + "@id": "https://github.com/FAIRsharing/subject-ontology" }, - "https://bioregistry.io/schema/#0000005": "0000070", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_334:$1", + "https://bioregistry.io/schema/#0000005": "0000400", + "https://bioregistry.io/schema/#0000006": "http://www.fairsharing.org/ontology/subject/SRAO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_334/Cassava/owl" + "@id": "https://raw.githubusercontent.com/FAIRsharing/subject-ontology/master/releases/SRAO.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nf7e91c76916647ba99dee0cb63cf2da8" + "@id": "https://orcid.org/0000-0002-7702-4495" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_334:", + "https://bioregistry.io/schema/#0000024": "http://www.fairsharing.org/ontology/subject/SRAO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_334:0000070" + "@id": "http://www.fairsharing.org/ontology/subject/SRAO_0000400" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_334" + "@value": "srao" } }, { - "@id": "_:Nf7e91c76916647ba99dee0cb63cf2da8", + "@id": "https://orcid.org/0000-0003-0533-3368", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" + "@value": "Jörg Wicker" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "admin@envipath.org" } }, { - "@id": "https://registry.identifiers.org/registry/prints", + "@id": "https://bioportal.bioontology.org/ontologies/REX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.expt", + "@id": "https://fairsharing.org/FAIRsharing.y00hz4", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/nif.ext", + "@id": "https://bioregistry.io/registry/vega", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vertebrate Genome Annotation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://registry.bio2kg.org/resource/vega" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.re3data.org/repository/r3d100012575" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mr293q" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "genome" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: External" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "https://vega.archive.ensembl.org/index.html" }, - "https://bioregistry.io/schema/#0000005": "7123", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nifext_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "OTTHUMG00000169812", + "https://bioregistry.io/schema/#0000006": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0003-0338-3070" }, "https://bioregistry.io/schema/#0000023": { - "@value": "NIFEXT" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nifext_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nifext_7123" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nif.ext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sider.drug", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/lter", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ecological terms", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Long Term Ecological Research Controlled Vocabulary" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://vocab.lternet.edu/vocab/vocab/index.php" + "@value": "VEGA" }, - "https://bioregistry.io/schema/#0000005": "182", - "https://bioregistry.io/schema/#0000006": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=", + "https://bioregistry.io/schema/#0000024": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=182" + "@id": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=OTTHUMG00000169812" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lter" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DDANAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/VARIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "vega" } }, { - "@id": "https://fairsharing.org/FAIRsharing.0b7e54", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGRhCellID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://www.uniprot.org/database/DB-0005", + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/SENSO", + "@id": "http://aber-owl.net/ontology/OVAE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/pombase", + "@id": "https://bioregistry.io/registry/ontoavida", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets.", + "http://purl.org/dc/terms/description": "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://gitlab.com/fortunalab/ontoavida" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PomBase" + "@value": "Ontology for Avida digital evolution platform" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PomBase" + "@id": "http://www.ontobee.org/ontology/ONTOAVIDA" }, { - "@id": "https://registry.identifiers.org/registry/pombase" + "@id": "https://www.obofoundry.org/ontology/ontoavida" }, { - "@id": "http://www.wikidata.org/entity/P6245" + "@id": "http://aber-owl.net/ontology/ONTOAVIDA" }, { - "@id": "https://registry.bio2kg.org/resource/pombase" - }, + "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pombase" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase" + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://gitlab.com/fortunalab/ontoavida" + }, + "https://bioregistry.io/schema/#0000005": "00000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONTOAVIDA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ontoavida.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/ncit" }, { - "@id": "https://www.uniprot.org/database/DB-0031" + "@id": "https://bioregistry.io/registry/fbcv" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase" + "@id": "https://bioregistry.io/registry/gsso" }, { - "@id": "https://fairsharing.org/FAIRsharing.8jsya3" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://www.re3data.org/repository/r3d100011478" + "@id": "https://bioregistry.io/registry/stato" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.pombase.org/" - }, - "https://bioregistry.io/schema/#0000005": "SPCC13B11.01", - "https://bioregistry.io/schema/#0000006": "https://www.pombase.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^S\\w+(\\.)?\\w+(\\.)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "PomBase" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8374-1941" }, - "https://bioregistry.io/schema/#0000024": "https://www.pombase.org/gene/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONTOAVIDA_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.pombase.org/gene/SPCC13B11.01" + "@id": "http://purl.obolibrary.org/obo/ONTOAVIDA_00000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pombase" + "@value": "ontoavida" } }, { - "@id": "https://bioregistry.io/registry/grin.taxonomy", + "@id": "https://fairsharing.org/FAIRsharing.3J6NYn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2bdvmk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CDNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.wikidata.org/entity/P5299", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/decipher", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact.", + "http://purl.org/dc/terms/description": "CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GRIN URL" + "@value": "DECIPHER CNV Syndromes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GRIN" - }, - { - "@id": "https://registry.identifiers.org/registry/grin.taxonomy" + "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x" }, { - "@id": "http://www.wikidata.org/entity/P1421" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GRIN" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ars-grin.gov/cgi-bin/npgs/html/index.pl?language=en" + "@id": "https://www.deciphergenomics.org/" }, - "https://bioregistry.io/schema/#0000005": "19333", - "https://bioregistry.io/schema/#0000006": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://www.deciphergenomics.org/syndrome/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?", + "https://bioregistry.io/schema/#0000024": "https://www.deciphergenomics.org/syndrome/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?19333" + "@id": "https://www.deciphergenomics.org/syndrome/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "grin.taxonomy" + "@value": "decipher" } }, { - "@id": "https://bioregistry.io/registry/cp", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://bioregistry.io/metaregistry/biocontext/PomBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellular Phenotypes" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/cl" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cp" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/myco.lepra", + "@id": "http://aber-owl.net/ontology/ICF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL", + "@id": "https://bioregistry.io/metaregistry/biocontext/STITCH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SENSO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SWEET", + "@id": "https://www.obofoundry.org/ontology/zeco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO", + "@id": "http://www.ontobee.org/ontology/TO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/fbol", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/schema/#0000017", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Fungal Working Group Fungal Barcoding." + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBOL" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol" - }, - { - "@id": "https://registry.identifiers.org/registry/fbol" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.fungalbarcoding.org/" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "depends on" }, - "https://bioregistry.io/schema/#0000005": "2224", - "https://bioregistry.io/schema/#0000006": "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/fbol:", - "https://bioregistry.io/schema/#0000029": { - "@value": "fbol" + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000001" } }, { - "@id": "https://bioregistry.io/registry/ivdb", + "@id": "https://bioportal.bioontology.org/ontologies/PMR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sgd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mw.project", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively.", + "http://purl.org/dc/terms/description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Influenza Virus Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/ivdb" + "@value": "Metabolomics Workbench Project" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "dna" + "@id": "https://registry.identifiers.org/registry/mw.project" }, { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.project" }, { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.PROJECT" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://influenza.psych.ac.cn/" + "@id": "http://www.metabolomicsworkbench.org/" }, - "https://bioregistry.io/schema/#0000005": "E13035", - "https://bioregistry.io/schema/#0000006": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1", + "https://bioregistry.io/schema/#0000005": "PR000001", + "https://bioregistry.io/schema/#0000006": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1", + "https://bioregistry.io/schema/#0000008": "^PR[0-9]{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=", + "https://bioregistry.io/schema/#0000024": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=E13035" + "@id": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=PR000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ivdb" + "@value": "mw.project" } }, { - "@id": "https://fairsharing.org/FAIRsharing.cc3f2x", + "@id": "http://www.ontobee.org/ontology/DDANAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oid", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/aeon", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page).", + "@id": "https://fairsharing.org/FAIRsharing.595710", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/tibonto/aeon" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Academic Event Ontology" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://tibonto.github.io/aeon/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AEON_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/tibonto/aeon/main/aeon.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1595-3213" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AEON_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/AEON_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "aeon" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/complexportal", + "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET", + "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.e3t0yw", + "@id": "http://www.wikidata.org/entity/P353", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.62", + "@id": "http://www.ontobee.org/ontology/OlatDv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno", + "@id": "http://edamontology.org/data_2719", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEP", + "@id": "https://bioregistry.io/metaregistry/biocontext/BILA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100014071", + "@id": "https://registry.identifiers.org/registry/gpcrdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE", + "@id": "https://registry.identifiers.org/registry/aspgd.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/SASAP", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository", + "@id": "https://www.uniprot.org/database/DB-0183", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://aber-owl.net/ontology/MF", + "@id": "http://www.wikidata.org/entity/P2063", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIAEST", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/orphanet", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbEST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://bioregistry.io/registry/caloha", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/lcsh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.", + "http://purl.org/dc/terms/description": "Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/calipho-sib/controlled-vocabulary" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CALIPHO Group Ontology of Human Anatomy" + "@value": "Library of Congress Subject Headings" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "human" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "ontology" + "@id": "http://www.wikidata.org/entity/P244" }, { - "@value": "physiology" + "@id": "https://bartoc.org/en/node/454" }, { - "@value": "anatomy" + "@id": "https://fairsharing.org/FAIRsharing.d31795" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/calipho-sib/controlled-vocabulary" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" }, - "https://bioregistry.io/schema/#0000005": "TS-0001", - "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/term/$1", - "https://bioregistry.io/schema/#0000008": "^TS-\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/calipho-sib/controlled-vocabulary/master/caloha.obo" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://id.loc.gov/authorities" }, + "https://bioregistry.io/schema/#0000005": "nb2018006591", + "https://bioregistry.io/schema/#0000006": "https://id.loc.gov/authorities/$1", + "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\d{8,10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0819-0473" - }, - "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/term/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "lcnafid" + }, + { + "@value": "lcnaf" + } + ], + "https://bioregistry.io/schema/#0000024": "https://id.loc.gov/authorities/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.nextprot.org/term/TS-0001" + "@id": "https://id.loc.gov/authorities/nb2018006591" }, "https://bioregistry.io/schema/#0000029": { - "@value": "caloha" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/world2dpage", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "lcsh" } }, { - "@id": "http://edamontology.org/data_2653", + "@id": "https://fairsharing.org/FAIRsharing.9091d9", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/seed", + "@id": "https://www.re3data.org/repository/r3d100010245", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/ngbo", + "@id": "http://agroportal.lirmm.fr/ontologies/PECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bartoc.org/en/node/20434", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/so", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/inchikey", + "@id": "https://bioregistry.io/registry/vsmo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI.", + "http://purl.org/dc/terms/description": "an ontology for vector surveillance and management, focusing on arthropod vectors and vector-borne pathogens with relevance to humans or domestic animals, and with special emphasis on content to support operational activities through inclusion in databases, data management systems, or decision support systems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "InChIKey" + "@value": "Ontology for vector surveillance and management" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/inchikey" - }, - { - "@id": "http://www.wikidata.org/entity/P235" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHIKEY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchikey" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.chemspider.com/" + "@id": "https://code.google.com/archive/p/vector-surveillance-and-management-ontology/" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VSMO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/cthoyt/vsmo/main/vsmo.owl" }, - "https://bioregistry.io/schema/#0000005": "RYYVLZVUVIJVGH-UHFFFAOYSA-N", - "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/inchikey=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.chemspider.com/inchikey=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VSMO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.chemspider.com/inchikey=RYYVLZVUVIJVGH-UHFFFAOYSA-N" + "@id": "http://purl.obolibrary.org/obo/VSMO_0000000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "inchikey" + "@value": "vsmo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0002-7613-4123", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jakob Voß" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "voss@gbv.de" + "@id": "https://registry.bio2kg.org/resource/zfin", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/fbol", + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.ANALYTE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2mayq0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/lipidmaps", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://cropontology.org/ontology/CO_337", + "@id": "https://bioregistry.io/metaregistry/biocontext/OGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/kaggle", + "@id": "https://registry.identifiers.org/registry/oryzabase.stage", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359", + "@id": "https://registry.identifiers.org/registry/glida.ligand", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/cteno", + "@id": "https://registry.bio2kg.org/resource/wormbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0002-3734-1859", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Marc Ciriello" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Marc_Ciriello@hms.harvard.edu" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/vo", + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/asap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pwEima", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/bco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities.", + "http://purl.org/dc/terms/description": "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/vaccineontology/VO" + "@id": "https://github.com/BiodiversityOntologies/bco" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vaccine Ontology" + "@value": "Biological Collections Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo" + "@id": "https://bioportal.bioontology.org/ontologies/BCO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/VO" + "@id": "https://fairsharing.org/FAIRsharing.8ktkqy" }, { - "@id": "http://www.wikidata.org/entity/P1928" + "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO" }, { - "@id": "https://www.obofoundry.org/ontology/vo" + "@id": "http://agroportal.lirmm.fr/ontologies/BCO" }, { - "@id": "https://registry.bio2kg.org/resource/vo" + "@id": "http://www.ontobee.org/ontology/BCO" }, { - "@id": "https://fairsharing.org/FAIRsharing.zwtww5" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco" }, { - "@id": "http://aber-owl.net/ontology/VO" + "@id": "https://www.obofoundry.org/ontology/bco" }, { - "@id": "http://www.ontobee.org/ontology/VO" + "@id": "https://bioregistry.io/metaregistry/biocontext/BCO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VO" + "@id": "http://aber-owl.net/ontology/BCO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "pathobiochemistry" - }, - { - "@value": "immunology" + "@value": "ontology" }, { - "@value": "obo" + "@value": "biodiversity" }, { - "@value": "ontology" + "@value": "metagenomics" }, { - "@value": "vaccine" + "@value": "obo" }, { - "@value": "small molecule" + "@value": "taxonomy" }, { - "@value": "biomedical science" + "@value": "ecology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.violinet.org/vaccineontology" + "@id": "https://github.com/BiodiversityOntologies/bco" }, - "https://bioregistry.io/schema/#0000005": "0000093", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VO_$1", + "https://bioregistry.io/schema/#0000005": "0000081", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/BCO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vo.owl" + "@id": "http://purl.obolibrary.org/obo/bco.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/registry/fovt" }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "@id": "https://orcid.org/0000-0001-8815-0078" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/BCO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VO_0000093" + "@id": "http://purl.obolibrary.org/obo/BCO_0000081" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vo" + "@value": "bco" } }, { - "@id": "https://bioregistry.io/registry/cvx", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records.", + "@id": "https://www.re3data.org/repository/r3d100010978", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vaccine administered code set" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx" - }, - "https://bioregistry.io/schema/#0000005": "54", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/cvx/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/cvx/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/cvx/54" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cvx" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pfam", + "@id": "https://fairsharing.org/FAIRsharing.rb2drw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/APOLLO_SV", + "@id": "http://edamontology.org/data_1003", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/toxoplasma", + "@id": "http://www.ontobee.org/ontology/AGRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/molbase", + "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "http://edamontology.org/data_2635", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/XAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/atc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/3dmet", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.", + "http://purl.org/dc/terms/description": "3DMET is a database collecting three-dimensional structures of natural metabolites.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molbase" + "@value": "3D Metabolites" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/3dmet" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase" + "@id": "https://bioregistry.io/metaregistry/biocontext/3DMET" }, { - "@id": "https://registry.identifiers.org/registry/molbase" + "@id": "https://fairsharing.org/FAIRsharing.5ab0n7" + }, + { + "@id": "https://registry.identifiers.org/registry/3dmet" + }, + { + "@id": "https://registry.bio2kg.org/resource/3dmet" + }, + { + "@id": "http://www.wikidata.org/entity/P2796" + }, + { + "@id": "http://edamontology.org/data_2635" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "chemical" + }, + { + "@value": "metabolomics" + }, + { + "@value": "life science" + }, + { + "@value": "metabolite" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.molbase.com/" + "@id": "http://www.3dmet.dna.affrc.go.jp/" }, - "https://bioregistry.io/schema/#0000005": "128796-39-4", - "https://bioregistry.io/schema/#0000006": "http://www.molbase.com/en/index.php?app=search&search_keyword=$1", - "https://bioregistry.io/schema/#0000008": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", + "https://bioregistry.io/schema/#0000005": "B00162", + "https://bioregistry.io/schema/#0000006": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1", + "https://bioregistry.io/schema/#0000008": "^B\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.molbase.com/en/index.php?app=search&search_keyword=", + "https://bioregistry.io/schema/#0000024": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.molbase.com/en/index.php?app=search&search_keyword=128796-39-4" + "@id": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=B00162" }, "https://bioregistry.io/schema/#0000029": { - "@value": "molbase" + "@value": "3dmet" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EOL", + "@id": "https://bioregistry.io/registry/vfdb.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VFDB Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.gene" + }, + { + "@id": "https://registry.identifiers.org/registry/vfdb.gene" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mgc.ac.cn/VFs/" + }, + "https://bioregistry.io/schema/#0000005": "VFG2154", + "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=VFG2154" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "vfdb.gene" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.rule", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/co_347", + "@id": "https://bioregistry.io/registry/gudmap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "March 2017 version ", + "http://purl.org/dc/terms/description": "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Castor bean ontology" + "@value": "Genitourinary Development Molecular Anatomy Project" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_347" + "@id": "https://www.re3data.org/repository/r3d100012193" }, { - "@id": "https://fairsharing.org/FAIRsharing.qrrvyk" + "@id": "https://bioregistry.io/metaregistry/biocontext/GUDMAP" }, { - "@id": "https://cropontology.org/ontology/CO_347" + "@id": "https://fairsharing.org/FAIRsharing.910c39" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347" + "@id": "https://registry.identifiers.org/registry/gudmap" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gudmap" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" + "@value": "genomics" }, { - "@value": "ontology" + "@value": "developmental biology" }, { - "@value": "botany" + "@value": "cell biology" }, { - "@value": "life science" + "@value": "molecular biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_347/Castor%20bean" - }, - "https://bioregistry.io/schema/#0000005": "0000108", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_347:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_347/Castor%20bean/owl" + "@id": "http://www.gudmap.org/" }, + "https://bioregistry.io/schema/#0000005": "Q-2958", + "https://bioregistry.io/schema/#0000006": "https://gudmap.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb4dfa24385e947998230af7585b324a6" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_347:", + "https://bioregistry.io/schema/#0000024": "https://gudmap.org/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_347:0000108" + "@id": "https://gudmap.org/id/Q-2958" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_347" - } - }, - { - "@id": "_:Nb4dfa24385e947998230af7585b324a6", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.w4tncg", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "gudmap" } }, { - "@id": "http://edamontology.org/data_2356", + "@id": "https://registry.identifiers.org/registry/pmap.substratedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.ontobee.org/ontology/MCO", + "@id": "http://www.ontobee.org/ontology/XL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP", + "@id": "https://bioregistry.io/metaregistry/go/resolve/DOI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/umbbd.reaction", + "@id": "https://registry.identifiers.org/registry/mdm", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/mirbase", + "@id": "https://registry.bio2kg.org/resource/chembl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/fbsp", + "@id": "https://bioregistry.io/registry/sigmaaldrich", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/flybase" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "Sigma Aldrich is a life sciences supply vendor.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fly taxonomy" + "@value": "Sigma Aldrich" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioportal.bioontology.org/ontologies/FB-SP" + "@value": "vendor" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBSP" + "@value": "chemistry" }, { - "@id": "https://www.obofoundry.org/ontology/fbsp" + "@value": "life sciences" }, { - "@id": "http://aber-owl.net/ontology/FB-SP" + "@value": "biology" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.sigmaaldrich.com" + }, + "https://bioregistry.io/schema/#0000005": "HPA000698", + "https://bioregistry.io/schema/#0000006": "https://www.sigmaaldrich.com/US/en/product/sigma/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.sigmaaldrich.com/US/en/product/sigma/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.sigmaaldrich.com/US/en/product/sigma/HPA000698" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sigmaaldrich" + } + }, + { + "@id": "https://bioregistry.io/registry/pubchem.classification", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records.", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "obo" + "@id": "https://bioregistry.io/registry/pubchem" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.flybase.org/" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubChem Classification" }, - "https://bioregistry.io/schema/#0000005": "00000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBSP_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/fbsp.owl" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "chemistry" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1373-1705" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/classification/" + }, + "https://bioregistry.io/schema/#0000005": "87", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=87" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBSP_", "https://bioregistry.io/schema/#0000029": { - "@value": "fbsp" + "@value": "pubchem.classification" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sugarbind", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/mint", + "@id": "https://registry.bio2kg.org/resource/corum", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco", + "@id": "http://aber-owl.net/ontology/DCAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/mp", + "@id": "http://aber-owl.net/ontology/XPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/rnavdb", + "@id": "https://www.re3data.org/repository/r3d100011213", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/biomagresbank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species.", + "http://purl.org/dc/terms/description": "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "RNA Virus Database" + "@value": "BioMagResBank" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/rvd" + "@id": "https://registry.bio2kg.org/resource/biomagresbank" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "rna" - }, - { - "@value": "genome" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://virus.zoo.ox.ac.uk/rnavirusdb/" + "@id": "http://www.bmrb.wisc.edu/" }, - "https://bioregistry.io/schema/#0000005": "164750", - "https://bioregistry.io/schema/#0000006": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$1", + "https://bioregistry.io/schema/#0000005": "10046", + "https://bioregistry.io/schema/#0000006": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=164750" + "@id": "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=10046" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rnavdb" + "@value": "biomagresbank" } }, { - "@id": "https://bioregistry.io/registry/storedb.study", + "@id": "https://bioregistry.io/registry/araport", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Study inside StoreDB", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "Website with general information about Arabidopsis and functionalities such as a genomic viewer", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Arabidopsis Information Portal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/storedb" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Araport" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.uniprot.org/database/DB-0221" + }, + { + "@id": "https://registry.identifiers.org/registry/tair.name" } ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.araport.org/" + }, + "https://bioregistry.io/schema/#0000005": "AT5G05330", + "https://bioregistry.io/schema/#0000006": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1", + "https://bioregistry.io/schema/#0000008": "^AT.G[0-9]{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=AT5G05330" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "araport" + } + }, + { + "@id": "https://bioregistry.io/registry/agilent.probe", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "STOREDB at University of Cambridge" + "@value": "Agilent Probe" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "transcriptomics" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.storedb.org/" + "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-MEXP-2320/A-MEXP-2320.adf.txt" }, - "https://bioregistry.io/schema/#0000005": "1174", - "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/store_v3/study.jsp?studyId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "A_24_P98555", + "https://bioregistry.io/schema/#0000008": "^A_\\d+_.+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/store_v3/study.jsp?studyId=", + "https://bioregistry.io/schema/#0000029": { + "@value": "agilent.probe" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_347", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.j1wj7d", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.k008w7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5a4y1y", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/FPLX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0019", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/colonatlas", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Colorectal Cancer Atlas" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ColonAtlas" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.coloncanceratlas.org" + }, + "https://bioregistry.io/schema/#0000005": "ALA", + "https://bioregistry.io/schema/#0000006": "http://www.coloncanceratlas.org/search_cell_line?cell_line=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.coloncanceratlas.org/search_cell_line?cell_line=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.storedb.org/store_v3/study.jsp?studyId=1174" + "@id": "http://www.coloncanceratlas.org/search_cell_line?cell_line=ALA" }, "https://bioregistry.io/schema/#0000029": { - "@value": "storedb.study" + "@value": "colonatlas" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zmx7nn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.yecp83", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ERO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ncit", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_339", + "@id": "https://bioregistry.io/metaregistry/biocontext/MACIE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/eo", + "@id": "https://registry.identifiers.org/registry/cldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/iclc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Planteome/plant-environment-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Plant Environment Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.obofoundry.org/ontology/eo" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/EO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EO" - }, - { - "@id": "http://aber-owl.net/ontology/EO" - }, - { - "@id": "https://registry.identifiers.org/registry/eo" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eo" - }, - { - "@id": "https://registry.bio2kg.org/resource/eo" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "plant" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://planteome.org/" + "@value": "Interlab Cell Line Collection" }, - "https://bioregistry.io/schema/#0000005": "0007404", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/eo.owl" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/foodon" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.iclc.it" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1005-8383" + "https://bioregistry.io/schema/#0000005": "ATL98012", + "https://bioregistry.io/schema/#0000006": "http://www.iclc.it/details/det_list.php?line_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w{3}\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.iclc.it/details/det_list.php?line_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.iclc.it/details/det_list.php?line_id=ATL98012" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EO_", "https://bioregistry.io/schema/#0000029": { - "@value": "eo" - } - }, - { - "@id": "http://www.ontobee.org/ontology/SBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VTO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "iclc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb", + "@id": "https://registry.bio2kg.org/resource/intact", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMMP:BIOMAPS", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/agro", + "@id": "https://bioregistry.io/registry/greengenes", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities", + "http://purl.org/dc/terms/description": "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/AgriculturalSemantics/agro" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Agronomy Ontology" + "@value": "16S rRNA gene database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO" - }, - { - "@id": "http://www.ontobee.org/ontology/AGRO" + "@id": "https://registry.identifiers.org/registry/greengenes" }, { - "@id": "http://aber-owl.net/ontology/AGRO" + "@id": "https://registry.bio2kg.org/resource/greengenes" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/AGRO" + "@id": "https://www.re3data.org/repository/r3d100010549" }, { - "@id": "https://www.obofoundry.org/ontology/agro" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro" + "@id": "https://fairsharing.org/FAIRsharing.bpxgb6" }, { - "@id": "https://fairsharing.org/FAIRsharing.m40bhw" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes" }, { - "@id": "https://bioportal.bioontology.org/ontologies/AGRO" + "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "farming systems research" - }, - { - "@value": "plant breeding" + "@value": "rna" }, { - "@value": "agronomy" + "@value": "life science" }, { - "@value": "agriculture" + "@value": "genetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/AgriculturalSemantics/agro" - }, - "https://bioregistry.io/schema/#0000005": "00020007", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AGRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/agro.owl" + "@id": "http://greengenes.lbl.gov/" }, + "https://bioregistry.io/schema/#0000005": "100000", + "https://bioregistry.io/schema/#0000006": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/uo" - }, - { - "@id": "https://bioregistry.io/registry/foodon" - }, - { - "@id": "https://bioregistry.io/registry/iao" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/pato" - }, - { - "@id": "https://bioregistry.io/registry/obi" - }, - { - "@id": "https://bioregistry.io/registry/to" - }, - { - "@id": "https://bioregistry.io/registry/peco" - }, - { - "@id": "https://bioregistry.io/registry/bfo" - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/xco" - }, - { - "@id": "https://bioregistry.io/registry/po" - }, - { - "@id": "https://bioregistry.io/registry/go" - } - ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8461-9745" + "@id": "https://orcid.org/0000-0002-1618-9827" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AGRO_", + "https://bioregistry.io/schema/#0000024": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/AGRO_00020007" + "@id": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=100000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "agro" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "greengenes" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cameo", + "@id": "http://aber-owl.net/ontology/XCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PHENX", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex", + "@id": "http://aber-owl.net/ontology/FALDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c7f4d7", + "@id": "https://bioregistry.io/registry/cellbank.australia", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CellBank Australia" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/" + }, + "https://bioregistry.io/schema/#0000005": "ab-1-ha", + "https://bioregistry.io/schema/#0000006": "https://www.cellbankaustralia.com/$1.html", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cellbank.australia:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.cellbankaustralia.com/ab-1-ha.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cellbank.australia" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb", + "@id": "https://bioregistry.io/registry/gnomad", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community (from https://gnomad.broadinstitute.org).", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genome Aggregation Database" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://gnomad.broadinstitute.org" + }, + "https://bioregistry.io/schema/#0000005": "1-55516888-G-GA", + "https://bioregistry.io/schema/#0000006": "https://gnomad.broadinstitute.org/variant/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6025-0015" + }, + "https://bioregistry.io/schema/#0000024": "https://gnomad.broadinstitute.org/variant/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://gnomad.broadinstitute.org/variant/1-55516888-G-GA" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gnomad" } }, { - "@id": "https://bioregistry.io/registry/xenbase", + "@id": "https://bioregistry.io/registry/jstor", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.", + "http://purl.org/dc/terms/description": "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Xenbase" + "@value": "Digital archive of scholarly articles" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0129" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011331" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase" - }, - { - "@id": "https://registry.bio2kg.org/resource/xenbase" - }, - { - "@id": "http://edamontology.org/data_2738" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jrv6wj" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase" - }, - { - "@id": "https://registry.identifiers.org/registry/xenbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "cell biology" - }, - { - "@value": "developmental biology" - }, - { - "@value": "genome" - }, - { - "@value": "anatomy" - }, - { - "@value": "genomics" - }, - { - "@value": "expression" + "@id": "https://registry.identifiers.org/registry/jstor" }, { - "@value": "proteomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR" }, { - "@value": "genetics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor" }, { - "@value": "functional genomics" + "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.xenbase.org/" + "@id": "http://www.jstor.org/" }, - "https://bioregistry.io/schema/#0000005": "XB-GENE-922462", - "https://bioregistry.io/schema/#0000006": "https://www.xenbase.org/entry/$1", - "https://bioregistry.io/schema/#0000008": "^XB\\-\\w+\\-\\d+$", + "https://bioregistry.io/schema/#0000005": "3075966", + "https://bioregistry.io/schema/#0000006": "http://www.jstor.org/stable/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2340-5356" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "Xenbase" - }, - "https://bioregistry.io/schema/#0000024": "https://www.xenbase.org/entry/", + "https://bioregistry.io/schema/#0000024": "http://www.jstor.org/stable/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.xenbase.org/entry/XB-GENE-922462" + "@id": "http://www.jstor.org/stable/3075966" }, "https://bioregistry.io/schema/#0000029": { - "@value": "xenbase" + "@value": "jstor" } }, { - "@id": "https://www.re3data.org/repository/r3d100010648", + "@id": "https://www.uniprot.org/database/DB-0068", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://fairsharing.org/FAIRsharing.da493y", + "@id": "http://aber-owl.net/ontology/ONE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.obofoundry.org/ontology/mf", + "@id": "https://bioregistry.io/registry/go.model", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Ontology Causal Assembly Model" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.geneontology.org/gocam" + }, + "https://bioregistry.io/schema/#0000005": "5fce9b7300001250", + "https://bioregistry.io/schema/#0000006": "http://noctua.geneontology.org/editor/graph/gomodel:$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://noctua.geneontology.org/editor/graph/gomodel:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://noctua.geneontology.org/editor/graph/gomodel:5fce9b7300001250" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "go.model" } }, { - "@id": "https://bioregistry.io/registry/radiomics", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]", + "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/edam.operation", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/edam" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/edamontology/edamontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Radiomics Ontology" + "@value": "EDAM Operation" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioportal.bioontology.org/ontologies/RO" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION" }, "http://www.w3.org/ns/dcat#keyword": { "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.radiomics.org/RO" + "@id": "http://edamontology.org" + }, + "https://bioregistry.io/schema/#0000005": "0004", + "https://bioregistry.io/schema/#0000006": "http://edamontology.org/operation_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" }, - "https://bioregistry.io/schema/#0000005": "LK99", - "https://bioregistry.io/schema/#0000006": "http://www.radiomics.org/RO/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6183-4429" + "@id": "https://orcid.org/0000-0002-1509-4981" }, - "https://bioregistry.io/schema/#0000024": "http://www.radiomics.org/RO/", + "https://bioregistry.io/schema/#0000024": "http://edamontology.org/operation_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.radiomics.org/RO/LK99" + "@id": "http://edamontology.org/operation_0004" }, "https://bioregistry.io/schema/#0000029": { - "@value": "radiomics" - } - }, - { - "@id": "https://orcid.org/0000-0001-8175-045X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Marcin Pawel Joachimiak" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "MJoachimiak@lbl.gov" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@value": "edam.operation" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/dbSNP", + "@id": "http://www.ontobee.org/ontology/OGMS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd", + "@id": "https://registry.identifiers.org/registry/lgic", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/ORNASEQ", + "@id": "http://www.ontobee.org/ontology/PROCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj", + "@id": "http://edamontology.org/data_1188", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.DRUG", + "@id": "http://www.ontobee.org/ontology/XCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000567", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://orcid.org/0000-0001-8479-0262", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Henning Hermjakob" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hhe@ebi.ac.uk" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PIGQTLDB", + "@id": "https://www.obofoundry.org/ontology/aao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.re3data.org/repository/r3d100010414", + "@id": "https://www.re3data.org/repository/r3d100010889", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://registry.identifiers.org/registry/orphanet.ordo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.azqskx", + "@id": "https://fairsharing.org/FAIRsharing.dq34p2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/CLYH", + "@id": "http://www.wikidata.org/entity/P1154", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.variant", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.hakg7c", + "@id": "https://www.re3data.org/repository/r3d100012902", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/gwascentral.phenotype", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0001-6261-7370", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GWAS Central Phenotype" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.phenotype" - }, - { - "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.PHENOTYPE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gwascentral.org/phenotypes" - }, - "https://bioregistry.io/schema/#0000005": "HGVPM623", - "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/phenotype/$1", - "https://bioregistry.io/schema/#0000008": "^HGVPM\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/phenotype/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gwascentral.org/phenotype/HGVPM623" + "@value": "Enrique Blanco" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gwascentral.phenotype" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "enrique.blanco@crg.eu" } }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.marker", + "@id": "https://registry.identifiers.org/registry/tissuelist", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VARIO", + "@id": "https://bioregistry.io/metaregistry/biocontext/PINA", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase", + "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/pypi", + "@id": "https://bioregistry.io/metaregistry/biocontext/GOA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/pdb", + "@id": "http://aber-owl.net/ontology/EOL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/agricola", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/rebase", + "@id": "https://orcid.org/0000-0003-0338-3070", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jennifer L Harrow" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jla1@sanger.ac.uk" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0185", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/genbank", + "@id": "https://bioregistry.io/registry/co_348", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42).", + "http://purl.org/dc/terms/description": "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GenBank" + "@value": "Brassica ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://semanticscience.org/resource/CHEMINF_000304" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010528" - }, - { - "@id": "http://edamontology.org/data_2292" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GenBank" - }, - { - "@id": "https://www.uniprot.org/database/DB-0028" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_348" }, { - "@id": "https://registry.bio2kg.org/resource/genbank" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank" + "@id": "https://cropontology.org/ontology/CO_348" }, { - "@id": "https://fairsharing.org/FAIRsharing.9kahy4" + "@id": "https://fairsharing.org/FAIRsharing.af7a2d" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" - }, - { - "@value": "functional genomics" - }, - { - "@value": "metagenomics" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "data management" - }, - { - "@value": "dna" + "@value": "botany" }, { - "@value": "transcriptomics" + "@value": "ontology" }, { - "@value": "virology" + "@value": "life science" }, { - "@value": "epidemiology" + "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/genbank/" + "@id": "https://cropontology.org/ontology/CO_348/Brassica" + }, + "https://bioregistry.io/schema/#0000005": "1100107", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_348:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_348/Brassica/owl" }, - "https://bioregistry.io/schema/#0000005": "U49845", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucleotide/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucleotide/", + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N8e53bbafb12b465bbef6aa16cd609597" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_348:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nucleotide/U49845" + "@id": "https://cropontology.org/rdf/CO_348:1100107" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genbank" + "@value": "co_348" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "_:N8e53bbafb12b465bbef6aa16cd609597", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "helpdesk cropontology" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_345", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR", + "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT", + "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-9117-9338", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zach Landis-Lewis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "zachll@umich.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron", + "@id": "https://www.re3data.org/repository/r3d100010795", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.ontobee.org/ontology/FBbi", + "@id": "https://bioportal.bioontology.org/ontologies/AERO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/reproduceme", + "@id": "https://bioregistry.io/registry/seed.compound", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility.", + "http://purl.org/dc/terms/description": "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "REPRODUCE-ME Ontology" + "@value": "SEED Compound" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/REPRODUCE-ME" + "@id": "https://registry.identifiers.org/registry/seed.compound" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme" + "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND" }, { - "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed.compound" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3id.org/reproduceme/research" - }, - "https://bioregistry.io/schema/#0000005": "MicrobeamManipulation", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/reproduceme#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://sheeba-samuel.github.io/REPRODUCE-ME/doc/reproduce-me.xml" + "@id": "http://modelseed.org/" }, + "https://bioregistry.io/schema/#0000005": "cpd15380", + "https://bioregistry.io/schema/#0000006": "http://modelseed.org/biochem/compounds/$1", + "https://bioregistry.io/schema/#0000008": "^cpd\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7981-8504" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/reproduceme#", + "https://bioregistry.io/schema/#0000024": "http://modelseed.org/biochem/compounds/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/reproduceme#MicrobeamManipulation" + "@id": "http://modelseed.org/biochem/compounds/cpd15380" }, "https://bioregistry.io/schema/#0000029": { - "@value": "reproduceme" + "@value": "seed.compound" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pazar", + "@id": "https://bioregistry.io/metaregistry/biocontext/IPI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/AMPHX", + "@id": "https://registry.bio2kg.org/resource/sabiork.reaction", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/xml", + "@id": "https://registry.bio2kg.org/resource/aphidbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.89e853", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/zfa", + "@id": "https://bioregistry.io/registry/uniparc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ZFA description.", + "http://purl.org/dc/terms/description": "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/cerivs/zebrafish-anatomical-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zebrafish anatomy and development ontology" + "@value": "UniProt Archive" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa" - }, - { - "@id": "http://www.ontobee.org/ontology/ZFA" + "@id": "http://edamontology.org/data_2392" }, { - "@id": "https://fairsharing.org/FAIRsharing.s3r6sk" + "@id": "https://registry.identifiers.org/registry/uniparc" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ZFA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc" }, { - "@id": "https://registry.bio2kg.org/resource/zfa" + "@id": "https://registry.bio2kg.org/resource/uniparc" }, { - "@id": "http://aber-owl.net/ontology/ZFA" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc" }, { - "@id": "https://www.obofoundry.org/ontology/zfa" + "@id": "https://www.re3data.org/repository/r3d100011519" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFA" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" - }, - { - "@value": "life science" - }, - { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, - { - "@value": "zebrafish" + "@value": "structure" }, { - "@value": "ontology" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" - }, - "https://bioregistry.io/schema/#0000005": "0005926", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZFA_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/zfa.owl" + "@id": "https://www.ebi.ac.uk/uniparc/" }, + "https://bioregistry.io/schema/#0000005": "UPI000000000A", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1", + "https://bioregistry.io/schema/#0000008": "^UPI[A-F0-9]{10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/zp" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2244-7917" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ZFA_RETIRED" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZFA_", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ZFA_0005926" + "@id": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=UPI000000000A" }, "https://bioregistry.io/schema/#0000029": { - "@value": "zfa" + "@value": "uniparc" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/RDFS", + "@id": "https://registry.bio2kg.org/resource/nextdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.wikidata.org/entity/P3431", + "@id": "https://fairsharing.org/FAIRsharing.7C0aVE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/cst", + "@id": "https://orcid.org/0000-0002-8683-0050", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Montana Smith" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "montana.smith@pnnl.gov" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mdm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/chembl.compound", + "@id": "https://bioregistry.io/metaregistry/biocontext/ZP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/ECTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/co_357", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/chembl" - } - ], + "http://purl.org/dc/terms/description": "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChEMBL" + "@value": "Woody Plant Ontology ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2646" + "@id": "https://fairsharing.org/FAIRsharing.2b04ae" }, { - "@id": "http://www.wikidata.org/entity/P592" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chembl.compound" + "@id": "https://cropontology.org/ontology/CO_357" }, { - "@id": "https://registry.identifiers.org/registry/chembl.compound" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_357" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND" + "@value": "life science" + }, + { + "@value": "botany" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/chembldb/" + "@id": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology" + }, + "https://bioregistry.io/schema/#0000005": "1000290", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_357:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_357/Woody%20Plant%20Ontology/owl" }, - "https://bioregistry.io/schema/#0000005": "CHEMBL465070", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/chembl/compound/inspect/$1", - "https://bioregistry.io/schema/#0000008": "^CHEMBL\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0294-5484" + "@id": "https://orcid.org/0000-0003-1877-1703" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/chembl/compound/inspect/", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_357:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL465070" + "@id": "https://cropontology.org/rdf/CO_357:1000290" }, "https://bioregistry.io/schema/#0000029": { - "@value": "chembl.compound" + "@value": "co_357" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/LABO", + "@id": "https://bioportal.bioontology.org/ontologies/DINTO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi", + "@id": "https://registry.identifiers.org/registry/mlc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/codelink", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release).", + "@id": "https://fairsharing.org/FAIRsharing.shm2f2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "microarray" - }, - { - "@value": "transcriptomics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/arrayexpress/files/A-GEHB-1/A-GEHB-1.adf.txt" - }, - "https://bioregistry.io/schema/#0000005": "GE86325", - "https://bioregistry.io/schema/#0000008": "^GE\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "codelink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/chictr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)", + "@id": "https://registry.identifiers.org/registry/panther.node", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chinese Clinical Trial Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.chictr.org.cn" - }, - "https://bioregistry.io/schema/#0000005": "ChiCTR2300070727", - "https://bioregistry.io/schema/#0000008": "^ChiCTR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "chictr" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PATO", + "@id": "https://registry.identifiers.org/registry/bacmap.map", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/skm", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/beetlebase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN", + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id", + "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/one", + "@id": "http://aber-owl.net/ontology/CAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/CARO", + "@id": "https://bioregistry.io/registry/cubedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cube db" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB" + }, + { + "@id": "https://registry.identifiers.org/registry/cubedb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/html/home.html" + }, + "https://bioregistry.io/schema/#0000005": "AKR", + "https://bioregistry.io/schema/#0000006": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cubedb:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/AKR/" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cubedb" } }, { - "@id": "https://registry.identifiers.org/registry/efo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/signaling-gateway", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch", + "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0002-8878-3972", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sandra Orchard" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "orchard@ebi.ac.uk" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/cmf", + "@id": "https://bioregistry.io/registry/obib", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain", + "http://purl.org/dc/terms/description": "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/biobanking/biobanking" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CranioMaxilloFacial ontology" + "@value": "Ontology for Biobanking" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/CMF" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBIB" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CMF" + "@id": "http://aber-owl.net/ontology/OBIB" }, { - "@id": "https://www.obofoundry.org/ontology/cmf" + "@id": "https://fairsharing.org/FAIRsharing.bxc508" }, { - "@id": "http://www.ontobee.org/ontology/CMF" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib" + }, + { + "@id": "https://www.obofoundry.org/ontology/obib" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OBIB" + }, + { + "@id": "http://www.ontobee.org/ontology/OBIB" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -123950,485 +112672,429 @@ }, { "@value": "obo" + }, + { + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://code.google.com/p/craniomaxillofacial-ontology/" + "@id": "https://github.com/biobanking/biobanking" }, - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CMF_$1", - "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000005": "0000389", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBIB_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/obib.owl" + }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5889-4463" + "@id": "https://orcid.org/0000-0002-2999-0103" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBIB_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OBIB_0000389" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CMF_", "https://bioregistry.io/schema/#0000029": { - "@value": "cmf" + "@value": "obib" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GREENGENES", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/elm", + "@id": "http://edamontology.org/data_1176", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pathwaycommons", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/ecmdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.", + "http://purl.org/dc/terms/description": "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Eukaryotic Linear Motif Resource" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/elm" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rj3kj5" - }, - { - "@id": "https://registry.identifiers.org/registry/elm" - }, - { - "@id": "https://www.uniprot.org/database/DB-0223" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ELM" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" + "@value": "E. coli Metabolite Database" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://elm.eu.org/" + "@id": "https://ecmdb.ca" }, - "https://bioregistry.io/schema/#0000005": "CLV_MEL_PAP_1", - "https://bioregistry.io/schema/#0000006": "http://elm.eu.org/elms/elmPages/$1.html", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000005": "ECMDB00005", + "https://bioregistry.io/schema/#0000006": "http://ecmdb.ca/compounds/$1", + "https://bioregistry.io/schema/#0000008": "^ECMDB\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/elm:", + "https://bioregistry.io/schema/#0000023": { + "@value": "ECMDB" + }, + "https://bioregistry.io/schema/#0000024": "http://ecmdb.ca/compounds/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://elm.eu.org/elms/elmPages/CLV_MEL_PAP_1.html" + "@id": "http://ecmdb.ca/compounds/ECMDB00005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "elm" - } - }, - { - "@id": "https://bartoc.org/en/node/18951", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "ecmdb" } }, { - "@id": "https://registry.identifiers.org/registry/unigene", + "@id": "https://registry.identifiers.org/registry/ligandexpo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metlin", + "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain", + "@id": "https://www.obofoundry.org/ontology/po", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RCB", + "@id": "https://registry.bio2kg.org/resource/unite", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/clinvar.submission", + "@id": "https://bioregistry.io/registry/gxa.expt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.", + "http://purl.org/dc/terms/description": "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ClinVar Submission" + "@value": "GXA Expt" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLINVAR.SUBMISSION" + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT" }, { - "@id": "https://registry.identifiers.org/registry/clinvar.submission" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gxa.expt" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission" + "@id": "https://registry.identifiers.org/registry/gxa.expt" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ncbi.nlm.nih.gov/clinvar/" - }, - "https://bioregistry.io/schema/#0000005": "SCV000151292", - "https://bioregistry.io/schema/#0000006": "http://www.ncbi.nlm.nih.gov/clinvar?term=$1", - "https://bioregistry.io/schema/#0000008": "^SCV\\d+(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ncbi.nlm.nih.gov/clinvar?term=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ncbi.nlm.nih.gov/clinvar?term=SCV000151292" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "clinvar.submission" - } - }, - { - "@id": "https://bioregistry.io/registry/hc.din", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Canada Drug Identification Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.canada.ca/en/health-canada/services/drugs-health-products/drug-products/fact-sheets/drug-identification-number.html" + "@id": "https://www.ebi.ac.uk/gxa/" }, - "https://bioregistry.io/schema/#0000005": "02069237", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "E-MTAB-2037", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/gxa/experiments/$1", + "https://bioregistry.io/schema/#0000008": "^[AEP]-\\w{4}-\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "hc.din" - } - }, - { - "@id": "https://bioregistry.io/registry/ocid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology Concept Identifiers" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/ocid" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ontochem.com/" + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/gxa/experiments/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" }, - "https://bioregistry.io/schema/#0000005": "190000021540", - "https://bioregistry.io/schema/#0000006": "https://ocid.ontochem.com/prefname?ocid=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ocid.ontochem.com/prefname?ocid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ocid.ontochem.com/prefname?ocid=190000021540" + "@id": "https://www.ebi.ac.uk/gxa/experiments/E-MTAB-2037" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ocid" + "@value": "gxa.expt" } }, { - "@id": "https://fairsharing.org/FAIRsharing.f69084", + "@id": "https://fairsharing.org/FAIRsharing.WxI96O", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARO", + "@id": "https://bioportal.bioontology.org/ontologies/PSDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/cellbank.australia", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.", + "@id": "https://fairsharing.org/FAIRsharing.k5k0yh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CellBank Australia" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cellbankaustralia.com/cellbank-australia-exclusive-lines/" - }, - "https://bioregistry.io/schema/#0000005": "ab-1-ha", - "https://bioregistry.io/schema/#0000006": "https://www.cellbankaustralia.com/$1.html", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cellbank.australia:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.cellbankaustralia.com/ab-1-ha.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cellbank.australia" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/allergome", + "@id": "https://bioregistry.io/registry/owl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources.", + "http://purl.org/dc/terms/description": "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allergome" + "@value": "Web Ontology Language" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/allergome" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ALLERGOME" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/allergome" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.w6cxgb" + "@id": "https://bioregistry.io/metaregistry/biocontext/owl" }, { - "@id": "https://registry.bio2kg.org/resource/allergome" + "@id": "https://fairsharing.org/FAIRsharing.atygwy" }, { - "@id": "https://www.uniprot.org/database/DB-0160" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "subject agnostic" }, { - "@value": "life science" + "@value": "ontology and terminology" }, { - "@value": "allergen" + "@value": "ontology" }, { - "@value": "health science" + "@value": "computer science" }, { - "@value": "medicine" + "@value": "informatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.allergome.org/" + "@id": "https://www.w3.org/TR/owl-features/" + }, + "https://bioregistry.io/schema/#0000005": "Ontology", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2002/07/owl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://triplydb.com/w3c/owl/download.trig.gz" }, - "https://bioregistry.io/schema/#0000005": "1948", - "https://bioregistry.io/schema/#0000006": "http://www.allergome.org/script/dettaglio.php?id_molecule=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.allergome.org/script/dettaglio.php?id_molecule=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5699-0515" + }, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2002/07/owl#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.allergome.org/script/dettaglio.php?id_molecule=1948" + "@id": "http://www.w3.org/2002/07/owl#Ontology" }, "https://bioregistry.io/schema/#0000029": { - "@value": "allergome" + "@value": "owl" } }, { - "@id": "https://www.re3data.org/repository/r3d100010205", + "@id": "https://bioregistry.io/metaregistry/biocontext/FLU", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P2275", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/VT", + "@id": "https://bioregistry.io/metaregistry/biocontext/DBG2INTRONS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/agrkb", + "@id": "https://bioregistry.io/registry/vcell", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.\n\nThe Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:\n\n- [ZFIN](https://zfin.org) - Zebrafish Information Network\n- [WormBase](https://wormbase.org)\n- [MGI](https://www.mgi.org) - Mouse Genome Informatics\n- [RGD](https://rgd.mcw.edu) - Rat Genome Database\n- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database\n- [FlyBase](https://flybase.org)\n- [Xenbase](https://www.xenbase.org)", + "http://purl.org/dc/terms/description": "Models developed with the Virtual Cell (VCell) software prorgam.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alliance of Genome Resources Knowledge Base" + "@value": "VCell Published Models" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "model organism database" + "@id": "https://registry.identifiers.org/registry/vcell" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.alliancegenome.org" + "@id": "https://health.uconn.edu/" }, - "https://bioregistry.io/schema/#0000005": "100000000000001", - "https://bioregistry.io/schema/#0000006": "https://www.alliancegenome.org/accession/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9][0-9]{14}$", + "https://bioregistry.io/schema/#0000005": "201022999", + "https://bioregistry.io/schema/#0000006": "https://vcell.org/biomodel-$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5,}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://www.alliancegenome.org/accession/", + "https://bioregistry.io/schema/#0000024": "https://vcell.org/biomodel-", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.alliancegenome.org/accession/100000000000001" + "@id": "https://vcell.org/biomodel-201022999" }, "https://bioregistry.io/schema/#0000029": { - "@value": "agrkb" + "@value": "vcell" } }, { - "@id": "https://registry.identifiers.org/registry/civic.eid", + "@id": "https://www.obofoundry.org/ontology/wbls", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/hinv.locus", + "@id": "https://www.obofoundry.org/ontology/ornaseq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.46s4nt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/SIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/DTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.ontobee.org/ontology/RBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/gnps.task", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.", + "http://purl.org/dc/terms/description": "GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "H-InvDb Locus" + "@value": "Global Natural Products Social Molecular Networking Task" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS" - }, - { - "@id": "https://registry.identifiers.org/registry/hinv.locus" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" + "@id": "https://gnps.ucsd.edu/" }, - "https://bioregistry.io/schema/#0000005": "HIX0004394", - "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1", - "https://bioregistry.io/schema/#0000008": "^HIX\\d{7}(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "4b848c342a4f4abc871bdf8a09a60807", + "https://bioregistry.io/schema/#0000006": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1", + "https://bioregistry.io/schema/#0000008": "^[a-f0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7647-6097" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0004394" + "@id": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=4b848c342a4f4abc871bdf8a09a60807" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hinv.locus" + "@value": "gnps.task" } }, { - "@id": "https://bioregistry.io/registry/did", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/nomen", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary.", + "http://purl.org/dc/terms/description": "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SpeciesFileGroup/nomen" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Decentralized Identifier" + "@value": "A nomenclatural ontology for biological names" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/did" + "@id": "http://www.ontobee.org/ontology/NOMEN" }, { - "@id": "https://registry.identifiers.org/registry/did" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen" + }, + { + "@id": "https://www.obofoundry.org/ontology/nomen" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NOMEN" + }, + { + "@id": "http://aber-owl.net/ontology/NOMEN" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://w3c-ccg.github.io/did-spec/" + "@id": "https://github.com/SpeciesFileGroup/nomen" + }, + "https://bioregistry.io/schema/#0000005": "0000295", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NOMEN_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/nomen.owl" }, - "https://bioregistry.io/schema/#0000005": "sov:WRfXPg8dantKVubE3HX8pw", - "https://bioregistry.io/schema/#0000006": "https://uniresolver.io/#did:$1", - "https://bioregistry.io/schema/#0000008": "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://uniresolver.io/#did:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5640-5491" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NOMEN_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://uniresolver.io/#did:sov:WRfXPg8dantKVubE3HX8pw" + "@id": "http://purl.obolibrary.org/obo/NOMEN_0000295" }, "https://bioregistry.io/schema/#0000029": { - "@value": "did" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gudmap", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "nomen" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.PATHWAY", + "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/neuronames", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.", + "@id": "https://fairsharing.org/FAIRsharing.kj4pvk", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NeuroNames" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P4394" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://braininfo.rprc.washington.edu/" - }, - "https://bioregistry.io/schema/#0000005": "268", - "https://bioregistry.io/schema/#0000006": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "neuroname" - }, - "https://bioregistry.io/schema/#0000024": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=268" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "neuronames" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/intenz", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/co_335", + "@id": "https://bioregistry.io/registry/co_339", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CIAT Common bean trait dictionary - version August 2014", + "http://purl.org/dc/terms/description": "Lentil Trait Dictionary in template v5 - ICARDA - July 2015", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, @@ -124436,56 +113102,59 @@ "@id": "https://github.com/bioversity/Crop-Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Bean ontology" + "@value": "Lentil ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.a14123" + "@id": "https://cropontology.org/ontology/CO_339" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339" }, { - "@id": "https://cropontology.org/ontology/CO_335" + "@id": "https://fairsharing.org/FAIRsharing.ry1ezg" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_335" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_339" } ], "http://www.w3.org/ns/dcat#keyword": [ { "@value": "agriculture" }, + { + "@value": "botany" + }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cropontology.org/ontology/CO_335/Common%20Bean" + "@id": "https://cropontology.org/ontology/CO_339/Lentil" }, - "https://bioregistry.io/schema/#0000005": "0000189", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_335:$1", + "https://bioregistry.io/schema/#0000005": "0000032", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_339:$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.cropontology.org/ontology/CO_335/Common%20Bean/owl" + "@id": "https://cropontology.org/ontology/CO_339/Lentil/owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N60032d4dab624076aa02184b78b7efd2" + "@id": "_:N4dc05b1caeac4b4d91be4661e7a222e7" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_335:", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_339:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_335:0000189" + "@id": "https://cropontology.org/rdf/CO_339:0000032" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_335" + "@value": "co_339" } }, { - "@id": "_:N60032d4dab624076aa02184b78b7efd2", + "@id": "_:N4dc05b1caeac4b4d91be4661e7a222e7", "http://www.w3.org/2000/01/rdf-schema#label": { "@value": "Crop Ontology Helpdesk" }, @@ -124494,3758 +113163,4727 @@ } }, { - "@id": "https://registry.identifiers.org/registry/ydpm", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hogenom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://edamontology.org/data_1105", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/igsn", + "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons", + "@id": "http://www.ontobee.org/ontology/MIAPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MS", + "@id": "https://registry.bio2kg.org/resource/glycomedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/napp", + "@id": "https://bartoc.org/en/node/1940", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/gard", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease.", + "@id": "http://www.ontobee.org/ontology/FMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/storedb.study", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Study inside StoreDB", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/storedb" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genetic and Rare Diseases Information Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P4317" + "@value": "STOREDB at University of Cambridge" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rarediseases.info.nih.gov/diseases" + "@id": "https://www.storedb.org/" }, - "https://bioregistry.io/schema/#0000005": "6038", - "https://bioregistry.io/schema/#0000006": "https://rarediseases.info.nih.gov/diseases/$1/index", + "https://bioregistry.io/schema/#0000005": "1174", + "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/store_v3/study.jsp?studyId=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "GARD" - }, - { - "@value": "Genetic and Rare Diseases Information Center" - } - ], - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/gard:", + "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/store_v3/study.jsp?studyId=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://rarediseases.info.nih.gov/diseases/6038/index" + "@id": "https://www.storedb.org/store_v3/study.jsp?studyId=1174" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gard" + "@value": "storedb.study" } }, { - "@id": "https://orcid.org/0000-0001-5212-7052", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jeffrey Grethe" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jgrethe@ucsd.edu" + "@id": "https://www.obofoundry.org/ontology/trans", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/nemo", + "@id": "https://registry.identifiers.org/registry/microscope", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/PomBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yeastintron", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/neurovault.image", + "@id": "https://registry.identifiers.org/registry/vfdb.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/treefam", + "@id": "https://registry.bio2kg.org/resource/ricecyc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/IDO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/imsr_em", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://aber-owl.net/ontology/OAE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/inn", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]", + "http://purl.org/dc/terms/description": "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "European Mouse Mutant Archive" + "@value": "International Nonproprietary Names" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM" + "@id": "http://www.wikidata.org/entity/P2275" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.who.int/teams/health-product-and-policy-standards/inn" + }, + "https://bioregistry.io/schema/#0000005": "fluticasone", + "https://bioregistry.io/schema/#0000006": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "INN_ID" + }, + "https://bioregistry.io/schema/#0000024": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mednet-communities.net/inn/db/ViewINN.aspx?i=fluticasone" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "inn" + } + }, + { + "@id": "https://bioregistry.io/registry/ucas", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An identifier for institutions in the United Kingdom, used in GRID and ROR.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "UK Universities and Colleges Admissions Service" }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "mouse" - }, - { - "@value": "mutant strain" - }, - { - "@value": "" - }, - { - "@value": "mutant mouse repository" + "@value": "institution" }, { - "@value": "mutant mouse strain" + "@value": "bibliometrics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.infrafrontier.eu/emma/" + "@id": "https://www.ucas.com" }, - "https://bioregistry.io/schema/#0000005": "11478", - "https://bioregistry.io/schema/#0000006": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "N21", + "https://bioregistry.io/schema/#0000008": "^\\w\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=11478" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "imsr_em" + "@value": "ucas" } }, { - "@id": "https://registry.identifiers.org/registry/ena.embl", + "@id": "http://aber-owl.net/ontology/MDM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.wikidata.org/entity/P4866", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-2100-6351", + "@id": "https://bioregistry.io/registry/darc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Carrine Blank" + "@value": "Database of Aligned Ribosomal Complexes" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "carrine.blank@umontana.edu" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/darc" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.evfe2s" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DARC" + }, + { + "@id": "https://registry.identifiers.org/registry/darc" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://darcsite.genzentrum.lmu.de/darc/index.php" + }, + "https://bioregistry.io/schema/#0000005": "1250", + "https://bioregistry.io/schema/#0000006": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=1250" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "darc" } }, { - "@id": "https://bartoc.org/en/node/558", + "@id": "https://www.re3data.org/repository/r3d100012657", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY", + "@id": "https://bioportal.bioontology.org/ontologies/WB-LS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum", + "@id": "http://www.wikidata.org/entity/P3151", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "http://www.ontobee.org/ontology/AMPHX", + "@id": "https://bioregistry.io/registry/flybase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FlyBase is the database of the Drosophila Genome Projects and of associated literature.", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/fbbt" + }, + { + "@id": "https://bioregistry.io/registry/fbsp" + }, + { + "@id": "https://bioregistry.io/registry/fbrf" + }, + { + "@id": "https://bioregistry.io/registry/fbcv" + }, + { + "@id": "https://bioregistry.io/registry/fbtc" + } + ], "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FlyBase Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/fb" + }, + { + "@id": "https://www.uniprot.org/database/DB-0026" + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/FB" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FLYBASE" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010591" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wrvze3" + }, + { + "@id": "http://www.wikidata.org/entity/P3852" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FlyBase" + }, + { + "@id": "http://edamontology.org/data_1089" + }, + { + "@id": "https://registry.bio2kg.org/resource/flybase" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life-cycle" + }, + { + "@value": "genotype" + }, + { + "@value": "stock" + }, + { + "@value": "sequence" + }, + { + "@value": "functional genomics" + }, + { + "@value": "allele" + }, + { + "@value": "expression" + }, + { + "@value": "video resource" + }, + { + "@value": "phenotype" + }, + { + "@value": "image collection" + }, + { + "@value": "dna" + }, + { + "@value": "genomics" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "life science" + }, + { + "@value": "molecular genetics" + }, + { + "@value": "anatomy" + }, + { + "@value": "interaction" + }, + { + "@value": "controlled term" + }, + { + "@value": "movie" + }, + { + "@value": "gene" + }, + { + "@value": "blast" + }, + { + "@value": "rna-seq" + }, + { + "@value": "drosophilidae" + }, + { + "@value": "image" + }, + { + "@value": "genome" + }, + { + "@value": "molecular biology" + }, + { + "@value": "genetics" + }, + { + "@value": "comparative genomics" + }, + { + "@value": "bio.tools" + }, + { + "@value": "mutant" + }, + { + "@value": "faseb list" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://flybase.org/" + }, + "https://bioregistry.io/schema/#0000005": "FBgn0011293", + "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/$1", + "https://bioregistry.io/schema/#0000008": "^FB\\w{2}\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "FlyBase" + }, + { + "@value": "FB" + } + ], + "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://flybase.org/reports/FBgn0011293" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "flybase" + } + }, + { + "@id": "https://bioregistry.io/registry/co_325", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Banana ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325" + }, + { + "@id": "https://cropontology.org/ontology/CO_325" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gdszhh" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_325" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "agriculture" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_325/Banana" + }, + "https://bioregistry.io/schema/#0000005": "0000519", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_325:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_325/Banana/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6020-5919" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_325:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_325:0000519" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_325" } }, { - "@id": "https://registry.identifiers.org/registry/go_ref", + "@id": "https://registry.identifiers.org/registry/mw.study", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biogrid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/pmap.substratedb", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISSN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NASC", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://orcid.org/0000-0001-6466-877X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pol Castellano Escuder" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "polcaes@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.ry1ezg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MFOMD", + "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CLDB", + "@id": "https://fairsharing.org/FAIRsharing.dp0jvd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/NCIT", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/cath.superfamily", + "@id": "https://bioregistry.io/registry/transyt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/cath" - } - ], + "http://purl.org/dc/terms/description": "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CATH superfamily" + "@value": "Transport Systems Tracker" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/transyt" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/cath.superfamily" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cathdb.info/" + "@id": "https://www.bio.di.uminho.pt/" }, - "https://bioregistry.io/schema/#0000005": "1.10.10.200", - "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/cathnode/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$", + "https://bioregistry.io/schema/#0000005": "TR0000001", + "https://bioregistry.io/schema/#0000006": "https://transyt.bio.di.uminho.pt/reactions/$1", + "https://bioregistry.io/schema/#0000008": "^T[A-Z]\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/cathnode/", + "https://bioregistry.io/schema/#0000024": "https://transyt.bio.di.uminho.pt/reactions/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cathdb.info/cathnode/1.10.10.200" + "@id": "https://transyt.bio.di.uminho.pt/reactions/TR0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cath.superfamily" + "@value": "transyt" } }, { - "@id": "https://bioregistry.io/registry/ssbd.dataset", + "@id": "https://bioregistry.io/registry/kerafast", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "System Science of Biological Dynamics dataset" + "@value": "Kerafast cell lines" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.we2r5a" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "cell biology" - }, - { - "@value": "developmental biology" - }, - { - "@value": "molecular dynamics" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ssbd.riken.jp" + "@id": "https://www.kerafast.com/" }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://ssbd.riken.jp/database/dataset/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "EJH014", + "https://bioregistry.io/schema/#0000006": "https://www.kerafast.com/Search?SearchTerm="$1"", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ssbd.riken.jp/database/dataset/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/kerafast:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ssbd.riken.jp/database/dataset/1" + "@id": "https://www.kerafast.com/Search?SearchTerm="EJH014"" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ssbd.dataset" + "@value": "kerafast" } }, { - "@id": "https://bioregistry.io/registry/mcro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers.", + "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/UTHealth-Ontology/MCRO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Model Card Report Ontology" + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/wikidata", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/hasPart": [ { - "@id": "http://aber-owl.net/ontology/MCRO" + "@id": "http://www.wikidata.org/entity/P938" }, { - "@id": "https://www.obofoundry.org/ontology/mcro" + "@id": "http://www.wikidata.org/entity/P1693" }, { - "@id": "http://www.ontobee.org/ontology/MCRO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P592" + }, { - "@value": "obo" + "@id": "http://www.wikidata.org/entity/P494" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/UTHealth-Ontology/MCRO" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MCRO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mcro.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "@id": "http://www.wikidata.org/entity/P563" + }, { - "@id": "https://bioregistry.io/registry/iao" + "@id": "http://www.wikidata.org/entity/P6861" }, { - "@id": "https://bioregistry.io/registry/swo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4333-1857" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MCRO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "mcro" - } - }, - { - "@id": "http://edamontology.org/data_2642", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/abs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Annotated Regulatory Binding Sites" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://www.wikidata.org/entity/P1155" + }, { - "@id": "https://registry.identifiers.org/registry/abs" + "@id": "http://www.wikidata.org/entity/P3382" }, { - "@id": "https://registry.bio2kg.org/resource/abs" + "@id": "http://www.wikidata.org/entity/P11955" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ABS" + "@id": "http://www.wikidata.org/entity/P231" }, { - "@id": "http://edamontology.org/data_2741" + "@id": "http://www.wikidata.org/entity/P4971" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/abs" + "@id": "http://www.wikidata.org/entity/P557" }, { - "@id": "https://fairsharing.org/FAIRsharing.7mnebr" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P4732" + }, { - "@value": "interaction" + "@id": "http://www.wikidata.org/entity/P11949" }, { - "@value": "biology" + "@id": "http://www.wikidata.org/entity/P1578" }, { - "@value": "regulation" + "@id": "http://www.wikidata.org/entity/P6049" }, { - "@value": "gene" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genome.crg.es/datasets/abs2005/" - }, - "https://bioregistry.io/schema/#0000005": "A0014", - "https://bioregistry.io/schema/#0000006": "http://genome.crg.es/datasets/abs2005/entries/$1.html", - "https://bioregistry.io/schema/#0000008": "^A\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6261-7370" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/abs:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://genome.crg.es/datasets/abs2005/entries/A0014.html" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "abs" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2946", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/LIPRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/lincs.smallmolecule", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/cellimage", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cell Image Library" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://www.wikidata.org/entity/P593" + }, { - "@id": "https://www.re3data.org/repository/r3d100000023" + "@id": "http://www.wikidata.org/entity/P5683" }, { - "@id": "https://registry.identifiers.org/registry/cellimage" + "@id": "http://www.wikidata.org/entity/P11277" }, { - "@id": "https://registry.bio2kg.org/resource/cellimage" + "@id": "http://www.wikidata.org/entity/P3852" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cellimage" + "@id": "http://www.wikidata.org/entity/P6245" }, { - "@id": "https://fairsharing.org/FAIRsharing.8t18te" + "@id": "http://www.wikidata.org/entity/P2946" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CELLIMAGE" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P2115" + }, { - "@value": "life science" + "@id": "http://www.wikidata.org/entity/P698" }, { - "@value": "image" + "@id": "http://www.wikidata.org/entity/P3329" }, { - "@value": "cell biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cellimagelibrary.org/" - }, - "https://bioregistry.io/schema/#0000005": "24801", - "https://bioregistry.io/schema/#0000006": "http://cellimagelibrary.org/images/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cellimagelibrary.org/images/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cellimagelibrary.org/images/24801" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cellimage" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pfam", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/datf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TEDDY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/nextdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nematode Expression Pattern DataBase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://www.wikidata.org/entity/P1930" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb" + "@id": "http://www.wikidata.org/entity/P5806" }, { - "@id": "https://fairsharing.org/FAIRsharing.xz5m1a" + "@id": "http://www.wikidata.org/entity/P1925" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTDB" + "@id": "http://www.wikidata.org/entity/P11430" }, { - "@id": "https://registry.bio2kg.org/resource/nextdb" + "@id": "http://www.wikidata.org/entity/P1554" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NextDB" + "@id": "http://www.wikidata.org/entity/P2796" }, { - "@id": "https://registry.identifiers.org/registry/nextdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://www.wikidata.org/entity/P663" + }, { - "@value": "gene expression" + "@id": "http://www.wikidata.org/entity/P4537" }, { - "@value": "life science" + "@id": "http://www.wikidata.org/entity/P496" }, { - "@value": "dna" + "@id": "http://www.wikidata.org/entity/P244" }, { - "@value": "genome" + "@id": "http://www.wikidata.org/entity/P2057" + }, + { + "@id": "http://www.wikidata.org/entity/P4317" + }, + { + "@id": "http://www.wikidata.org/entity/P686" + }, + { + "@id": "http://www.wikidata.org/entity/P699" + }, + { + "@id": "http://www.wikidata.org/entity/P353" + }, + { + "@id": "http://www.wikidata.org/entity/P1690" + }, + { + "@id": "http://www.wikidata.org/entity/P8656" + }, + { + "@id": "http://www.wikidata.org/entity/P11089" + }, + { + "@id": "http://www.wikidata.org/entity/P1929" + }, + { + "@id": "http://www.wikidata.org/entity/P7260" + }, + { + "@id": "http://www.wikidata.org/entity/P1391" + }, + { + "@id": "http://www.wikidata.org/entity/P7001" + }, + { + "@id": "http://www.wikidata.org/entity/P7471" + }, + { + "@id": "http://www.wikidata.org/entity/P6689" + }, + { + "@id": "http://www.wikidata.org/entity/P354" + }, + { + "@id": "http://www.wikidata.org/entity/P3636" + }, + { + "@id": "http://www.wikidata.org/entity/P1421" + }, + { + "@id": "http://www.wikidata.org/entity/P11199" + }, + { + "@id": "http://www.wikidata.org/entity/P3640" + }, + { + "@id": "http://www.wikidata.org/entity/P2275" + }, + { + "@id": "http://www.wikidata.org/entity/P2892" + }, + { + "@id": "http://www.wikidata.org/entity/P1748" + }, + { + "@id": "http://www.wikidata.org/entity/P1579" + }, + { + "@id": "http://www.wikidata.org/entity/P638" + }, + { + "@id": "http://www.wikidata.org/entity/P846" + }, + { + "@id": "http://www.wikidata.org/entity/P1154" + }, + { + "@id": "http://www.wikidata.org/entity/P3951" + }, + { + "@id": "http://www.wikidata.org/entity/P4866" + }, + { + "@id": "http://www.wikidata.org/entity/P2106" + }, + { + "@id": "http://www.wikidata.org/entity/P932" + }, + { + "@id": "http://www.wikidata.org/entity/P7963" + }, + { + "@id": "http://www.wikidata.org/entity/P5299" + }, + { + "@id": "http://www.wikidata.org/entity/P8121" + }, + { + "@id": "http://www.wikidata.org/entity/P671" + }, + { + "@id": "http://www.wikidata.org/entity/P5458" + }, + { + "@id": "http://www.wikidata.org/entity/P842" + }, + { + "@id": "http://www.wikidata.org/entity/P815" + }, + { + "@id": "http://www.wikidata.org/entity/P233" + }, + { + "@id": "http://www.wikidata.org/entity/P1928" + }, + { + "@id": "http://www.wikidata.org/entity/P2084" + }, + { + "@id": "http://www.wikidata.org/entity/P2871" + }, + { + "@id": "http://www.wikidata.org/entity/P7807" + }, + { + "@id": "http://www.wikidata.org/entity/P3289" + }, + { + "@id": "http://www.wikidata.org/entity/P6778" + }, + { + "@id": "http://www.wikidata.org/entity/P10074" + }, + { + "@id": "http://www.wikidata.org/entity/P352" + }, + { + "@id": "http://www.wikidata.org/entity/P2065" + }, + { + "@id": "http://www.wikidata.org/entity/P3606" + }, + { + "@id": "http://www.wikidata.org/entity/P1156" + }, + { + "@id": "http://www.wikidata.org/entity/P8061" + }, + { + "@id": "http://www.wikidata.org/entity/P232" + }, + { + "@id": "http://www.wikidata.org/entity/P675" + }, + { + "@id": "http://www.wikidata.org/entity/P6209" + }, + { + "@id": "http://www.wikidata.org/entity/P4901" + }, + { + "@id": "http://www.wikidata.org/entity/P3890" + }, + { + "@id": "http://www.wikidata.org/entity/P267" + }, + { + "@id": "http://www.wikidata.org/entity/P5270" + }, + { + "@id": "http://www.wikidata.org/entity/P234" + }, + { + "@id": "http://www.wikidata.org/entity/P4338" + }, + { + "@id": "http://www.wikidata.org/entity/P7718" + }, + { + "@id": "http://www.wikidata.org/entity/P2062" + }, + { + "@id": "http://www.wikidata.org/entity/P3590" + }, + { + "@id": "http://www.wikidata.org/entity/P830" + }, + { + "@id": "http://www.wikidata.org/entity/P356" + }, + { + "@id": "http://www.wikidata.org/entity/P299" + }, + { + "@id": "http://www.wikidata.org/entity/P1153" + }, + { + "@id": "http://www.wikidata.org/entity/P7333" + }, + { + "@id": "http://www.wikidata.org/entity/P351" + }, + { + "@id": "http://www.wikidata.org/entity/P662" + }, + { + "@id": "http://www.wikidata.org/entity/P696" + }, + { + "@id": "http://www.wikidata.org/entity/P4616" + }, + { + "@id": "http://www.wikidata.org/entity/P5501" + }, + { + "@id": "http://www.wikidata.org/entity/P10538" + }, + { + "@id": "http://www.wikidata.org/entity/P11956" + }, + { + "@id": "http://www.wikidata.org/entity/P1550" + }, + { + "@id": "http://www.wikidata.org/entity/P8372" + }, + { + "@id": "http://www.wikidata.org/entity/P850" + }, + { + "@id": "http://www.wikidata.org/entity/P3519" + }, + { + "@id": "http://www.wikidata.org/entity/P2158" + }, + { + "@id": "http://www.wikidata.org/entity/P3811" + }, + { + "@id": "http://www.wikidata.org/entity/P591" + }, + { + "@id": "http://www.wikidata.org/entity/P486" + }, + { + "@id": "http://www.wikidata.org/entity/P3853" + }, + { + "@id": "http://www.wikidata.org/entity/P683" + }, + { + "@id": "http://www.wikidata.org/entity/P3088" + }, + { + "@id": "http://www.wikidata.org/entity/P8691" + }, + { + "@id": "http://www.wikidata.org/entity/P2576" + }, + { + "@id": "http://www.wikidata.org/entity/P652" + }, + { + "@id": "http://www.wikidata.org/entity/P11931" + }, + { + "@id": "http://www.wikidata.org/entity/P3841" + }, + { + "@id": "http://www.wikidata.org/entity/P3860" + }, + { + "@id": "http://www.wikidata.org/entity/P3870" + }, + { + "@id": "http://www.wikidata.org/entity/P4550" + }, + { + "@id": "http://www.wikidata.org/entity/P665" + }, + { + "@id": "http://www.wikidata.org/entity/P235" + }, + { + "@id": "http://www.wikidata.org/entity/P2646" + }, + { + "@id": "http://www.wikidata.org/entity/P2063" + }, + { + "@id": "http://www.wikidata.org/entity/P2926" + }, + { + "@id": "http://www.wikidata.org/entity/P1402" + }, + { + "@id": "http://www.wikidata.org/entity/P4495" + }, + { + "@id": "http://www.wikidata.org/entity/P3098" + }, + { + "@id": "http://www.wikidata.org/entity/P11198" + }, + { + "@id": "http://www.wikidata.org/entity/P3345" + }, + { + "@id": "http://www.wikidata.org/entity/P5221" + }, + { + "@id": "http://www.wikidata.org/entity/P4355" + }, + { + "@id": "http://www.wikidata.org/entity/P594" + }, + { + "@id": "http://www.wikidata.org/entity/P4394" + }, + { + "@id": "http://www.wikidata.org/entity/P3937" + }, + { + "@id": "http://www.wikidata.org/entity/P715" + }, + { + "@id": "http://www.wikidata.org/entity/P2064" + }, + { + "@id": "http://www.wikidata.org/entity/P4926" + }, + { + "@id": "http://www.wikidata.org/entity/P492" + }, + { + "@id": "http://www.wikidata.org/entity/P595" + }, + { + "@id": "http://www.wikidata.org/entity/P2153" + }, + { + "@id": "http://www.wikidata.org/entity/P9157" + }, + { + "@id": "http://www.wikidata.org/entity/P8117" + }, + { + "@id": "http://www.wikidata.org/entity/P1692" + }, + { + "@id": "http://www.wikidata.org/entity/P818" + }, + { + "@id": "http://www.wikidata.org/entity/P3201" + }, + { + "@id": "http://www.wikidata.org/entity/P1294" + }, + { + "@id": "http://www.wikidata.org/entity/P1832" + }, + { + "@id": "http://www.wikidata.org/entity/P4229" + }, + { + "@id": "http://www.wikidata.org/entity/P493" + }, + { + "@id": "http://www.wikidata.org/entity/P3151" + }, + { + "@id": "http://www.wikidata.org/entity/P11623" + }, + { + "@id": "http://www.wikidata.org/entity/P661" + }, + { + "@id": "http://www.wikidata.org/entity/P7720" + }, + { + "@id": "http://www.wikidata.org/entity/P9405" + }, + { + "@id": "http://www.wikidata.org/entity/P2689" + }, + { + "@id": "http://www.wikidata.org/entity/P2410" + }, + { + "@id": "http://www.wikidata.org/entity/P3431" + }, + { + "@id": "http://www.wikidata.org/entity/P3406" + }, + { + "@id": "http://www.wikidata.org/entity/P3117" + }, + { + "@id": "http://www.wikidata.org/entity/P8697" + }, + { + "@id": "http://www.wikidata.org/entity/P305" + }, + { + "@id": "http://www.wikidata.org/entity/P685" + }, + { + "@id": "http://www.wikidata.org/entity/P2870" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wikidata Property" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://nematode.lab.nig.ac.jp/" + "@value": "https://www.wikidata.org" }, - "https://bioregistry.io/schema/#0000005": "6b1", - "https://bioregistry.io/schema/#0000006": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=6b1" + "https://bioregistry.io/schema/#0000005": { + "@value": "P683" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nextdb" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4e3qh9", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "https://bioregistry.io/schema/#0000006": { + "@value": "http://www.wikidata.org/entity/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N28bf638d0ed04a62adc8f194345ca16b" } }, { - "@id": "http://edamontology.org/data_3021", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "_:N28bf638d0ed04a62adc8f194345ca16b", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "WikiData Support" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "info@wikidata.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmdb", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/publons.researcher", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work.", + "@id": "https://www.obofoundry.org/ontology/ehdaa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Publons Researcher" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://publons.com/researcher" - }, - "https://bioregistry.io/schema/#0000005": "1981638", - "https://bioregistry.io/schema/#0000006": "https://publons.com/researcher/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://publons.com/researcher/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://publons.com/researcher/1981638" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "publons.researcher" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336", + "@id": "https://registry.bio2kg.org/resource/ehda", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/co_346", + "@id": "https://bioregistry.io/registry/cryptodb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "oct 2016", + "http://purl.org/dc/terms/description": "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mungbean ontology" + "@value": "CryptoDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_346" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb" }, { - "@id": "https://fairsharing.org/FAIRsharing.fgd5gq" + "@id": "https://registry.bio2kg.org/resource/cryptodb" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_346" + "@id": "https://www.re3data.org/repository/r3d100012265" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346" + "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t3nprm" + }, + { + "@id": "https://registry.identifiers.org/registry/cryptodb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" + "@value": "parasitology" }, { - "@value": "ontology" + "@value": "functional genomics" }, { - "@value": "life science" + "@value": "genomics" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_346/Mungbean" - }, - "https://bioregistry.io/schema/#0000005": "0000199", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_346:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_346/Mungbean/owl" + "@id": "https://cryptodb.org/cryptodb/" }, + "https://bioregistry.io/schema/#0000005": "cgd7_230", + "https://bioregistry.io/schema/#0000006": "https://cryptodb.org/cryptodb/app/record/gene/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N274e55f6ea7440dfba8452e0d6b6d9dd" + "@id": "https://orcid.org/0000-0003-4446-6200" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_346:", + "https://bioregistry.io/schema/#0000024": "https://cryptodb.org/cryptodb/app/record/gene/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_346:0000199" + "@id": "https://cryptodb.org/cryptodb/app/record/gene/cgd7_230" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_346" - } - }, - { - "@id": "_:N274e55f6ea7440dfba8452e0d6b6d9dd", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "cryptodb" } }, { - "@id": "https://www.re3data.org/repository/r3d100010912", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo", + "@id": "https://bartoc.org/en/node/18377", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/registry/genewiki", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI.", + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Wiki" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genewiki" - }, - { - "@id": "https://www.uniprot.org/database/DB-0180" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t3snf" - }, - { - "@id": "https://registry.identifiers.org/registry/genewiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEWIKI" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genetics" - }, - { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://en.wikipedia.org/wiki/Gene_Wiki" - }, - "https://bioregistry.io/schema/#0000005": "1017", - "https://bioregistry.io/schema/#0000006": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/ncbigene" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://plugins.biogps.org/cgi-bin/wp.cgi?id=1017" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "genewiki" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/eo", + "@id": "http://aber-owl.net/ontology/TXPO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/DRON", + "@id": "https://fairsharing.org/FAIRsharing.pxr7x2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/seed", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100013060", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN", + "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mirex", + "@id": "https://bioregistry.io/registry/alzforum.mutation", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages.", + "http://purl.org/dc/terms/description": "Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "mirEX" + "@value": "Alzforum Mutations" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/mirex" + "@value": "alzheimer's disease" }, { - "@id": "https://fairsharing.org/FAIRsharing.q3b39v" + "@value": "variants" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX" + "@value": "genes" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://comgen.pl/mirex/?page=home" + "@id": "https://www.alzforum.org/mutations" }, - "https://bioregistry.io/schema/#0000005": "165a", - "https://bioregistry.io/schema/#0000006": "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes", - "https://bioregistry.io/schema/#0000008": "^\\d+(\\w+)?$", + "https://bioregistry.io/schema/#0000005": "app-d678n-tottori", + "https://bioregistry.io/schema/#0000006": "https://www.alzforum.org/mutations/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/mirex:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://comgen.pl/mirex1/?page=results/record&name=165a&exref=pp2a&limit=yes" + "https://bioregistry.io/schema/#0000023": { + "@value": "Alzforum_mut" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mirex" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/loqate", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "https://bioregistry.io/schema/#0000024": "https://www.alzforum.org/mutations/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.alzforum.org/mutations/app-d678n-tottori" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "alzforum.mutation" } }, { - "@id": "https://registry.identifiers.org/registry/validatordb", + "@id": "https://registry.identifiers.org/registry/pgx", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR", + "@id": "https://www.obofoundry.org/ontology/ncro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/ncit", + "@id": "https://fairsharing.org/FAIRsharing.f1449d", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/fbcv", + "@id": "https://bioportal.bioontology.org/ontologies/AISM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/adms", + "@id": "https://bioregistry.io/registry/orth", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies).", + "http://purl.org/dc/terms/description": "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SEMICeu/ADMS/" + "@id": "https://github.com/qfo/OrthologyOntology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Asset Description Metadata Schema Vocabulary" + "@value": "Orthology Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.4877h0" + }, + { + "@id": "http://aber-owl.net/ontology/ORTH" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ORTH" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "comparative genomics" + }, + { + "@value": "ontology" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/ns/adms" + "@id": "https://github.com/qfo/OrthologyOntology" + }, + "https://bioregistry.io/schema/#0000005": "HomologyRelation", + "https://bioregistry.io/schema/#0000006": "http://purl.org/net/orth#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/qfo/OrthologyOntology/raw/master/orthOntology_RC_v2_A.owl" }, - "https://bioregistry.io/schema/#0000005": "Asset", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/adms#$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N5067726a33d144dc8361a944c2151384" + "@id": "https://orcid.org/0000-0002-7558-2880" }, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/adms#", + "https://bioregistry.io/schema/#0000024": "http://purl.org/net/orth#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/adms#Asset" + "@id": "http://purl.org/net/orth#HomologyRelation" }, "https://bioregistry.io/schema/#0000029": { - "@value": "adms" - } - }, - { - "@id": "_:N5067726a33d144dc8361a944c2151384", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bert Van Nuffelen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bert.van.nuffelen@tenforce.com" + "@value": "orth" } }, { - "@id": "https://fairsharing.org/FAIRsharing.93g1th", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/reactome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P1156", + "@id": "http://www.wikidata.org/entity/P5683", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orthodb", + "@id": "https://bioregistry.io/metaregistry/biocontext/RXCUI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ecoliwiki", + "@id": "https://bioregistry.io/registry/tfclass", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes.", + "http://purl.org/dc/terms/description": "TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here..", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EcoliWiki from EcoliHub" + "@value": "Classification of Transcription Factors in Mammalia" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECOLIWIKI" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tx95wa" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EcoliWiki" + "@id": "https://fairsharing.org/FAIRsharing.XykycZ" }, { - "@id": "https://registry.identifiers.org/registry/ecoliwiki" + "@id": "https://bioregistry.io/metaregistry/go/resolve/TFClass" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" - }, - { - "@value": "life science" + "@value": "transcriptomics" }, { "@value": "bioinformatics" }, { - "@value": "ontology and terminology" + "@value": "phylogenetics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ecoliwiki.net/colipedia/" + "@id": "http://tfclass.bioinf.med.uni-goettingen.de" }, - "https://bioregistry.io/schema/#0000005": "aaeA", - "https://bioregistry.io/schema/#0000006": "http://ecoliwiki.net/colipedia/index.php/$1:Gene", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", + "https://bioregistry.io/schema/#0000005": "2.1.1", + "https://bioregistry.io/schema/#0000006": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ecoliwiki:", + "https://bioregistry.io/schema/#0000024": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://ecoliwiki.net/colipedia/index.php/aaeA:Gene" + "@id": "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=2.1.1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecoliwiki" + "@value": "tfclass" } }, { - "@id": "https://registry.identifiers.org/registry/cas", + "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/addgene", + "@id": "https://bioregistry.io/registry/string", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world.", + "http://purl.org/dc/terms/description": "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Addgene Plasmid Repository" + "@value": "Search Tool for Retrieval of Interacting Genes/Proteins" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010741" + "@id": "https://bioregistry.io/metaregistry/biocontext/STRING" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/addgene" + "@id": "https://www.uniprot.org/database/DB-0141" }, { - "@id": "https://fairsharing.org/FAIRsharing.8hcczk" + "@id": "http://edamontology.org/data_2302" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene" + "@id": "https://fairsharing.org/FAIRsharing.9b7wvk" }, { - "@id": "https://registry.identifiers.org/registry/addgene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/string" }, { - "@id": "https://registry.bio2kg.org/resource/addgene" + "@id": "https://www.re3data.org/repository/r3d100010604" + }, + { + "@id": "https://registry.bio2kg.org/resource/string" + }, + { + "@id": "https://registry.identifiers.org/registry/string" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "molecular biology" + "@value": "protein" }, { "@value": "life science" }, { - "@value": "faseb list" + "@value": "interaction" }, { - "@value": "sequence alignment" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://string.embl.de/" + }, + "https://bioregistry.io/schema/#0000005": "P53350", + "https://bioregistry.io/schema/#0000006": "http://string.embl.de/interactions/$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2627-833X" + }, + "https://bioregistry.io/schema/#0000024": "http://string.embl.de/interactions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://string.embl.de/interactions/P53350" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "string" + } + }, + { + "@id": "https://bioregistry.io/registry/tsc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tetrahymena Stock Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "repository" }, { - "@value": "plasmid" + "@value": "genetics" }, { - "@value": "bio.tools" + "@value": "molecular" + }, + { + "@value": "eukaryota" + }, + { + "@value": "culture" + }, + { + "@value": "cell" + }, + { + "@value": "research" + }, + { + "@value": "tetrahymena thermophila" + }, + { + "@value": "protozoan" + }, + { + "@value": "model" + }, + { + "@value": "cellular" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://addgene.org/" + "@id": "https://tetrahymena.vet.cornell.edu/" }, - "https://bioregistry.io/schema/#0000005": "50943", - "https://bioregistry.io/schema/#0000006": "http://addgene.org/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$", + "https://bioregistry.io/schema/#0000005": "SD00043", + "https://bioregistry.io/schema/#0000006": "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1", + "https://bioregistry.io/schema/#0000008": "^SD\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://addgene.org/", + "https://bioregistry.io/schema/#0000024": "https://tetrahymena.vet.cornell.edu/display.php?stockid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://addgene.org/50943" + "@id": "https://tetrahymena.vet.cornell.edu/display.php?stockid=SD00043" }, "https://bioregistry.io/schema/#0000029": { - "@value": "addgene" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010415", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "tsc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.gene", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fbol", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/eggnog", + "@id": "https://bioregistry.io/registry/imex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Molecular Exchange" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/imex" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imex" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010669" + }, + { + "@id": "https://registry.bio2kg.org/resource/imex" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "molecule" + }, + { + "@value": "interaction" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.imexconsortium.org/" + }, + "https://bioregistry.io/schema/#0000005": "19210-3", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1", + "https://bioregistry.io/schema/#0000008": "^\\d+(-\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-19210-3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "imex" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUGARBIND", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/rgd", + "@id": "https://bioregistry.io/registry/dbvar.variant", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Variants in dbVar.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Genomic Structural Variation - Variant" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/dbvar" + }, + "https://bioregistry.io/schema/#0000005": "nsv3875336", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/dbvar/variants/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "dbvar.variants" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/dbvar/variants/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/dbvar/variants/nsv3875336" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dbvar.variant" } }, { - "@id": "https://fairsharing.org/FAIRsharing.m40bhw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0001-7663-9028", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ardan Patwardhan" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "help@emdatabank.org" } }, { - "@id": "https://bartoc.org/en/node/430", + "@id": "https://www.obofoundry.org/ontology/eco", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://orcid.org/0000-0003-3212-7826", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hannele Laivuori" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hannele.laivuori@helsinki.fi" + "@id": "https://registry.identifiers.org/registry/biomodels.kisao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/scpd", + "@id": "https://registry.identifiers.org/registry/unipathway.reaction", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://aber-owl.net/ontology/IAO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unii", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.9te3ev", + "@id": "https://registry.identifiers.org/registry/google.patent", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/cvdo", + "@id": "https://bioregistry.io/registry/mirbase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to describe entities related to cardiovascular diseases", + "http://purl.org/dc/terms/description": "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/OpenLHS/CVDO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cardiovascular Disease Ontology" + "@value": "miRBase pre-miRNA" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirbase" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CVDO" + "@id": "https://www.re3data.org/repository/r3d100010566" }, { - "@id": "http://aber-owl.net/ontology/CVDO" + "@id": "https://registry.identifiers.org/registry/mirbase" }, { - "@id": "http://www.ontobee.org/ontology/CVDO" + "@id": "http://edamontology.org/data_2642" }, { - "@id": "https://www.obofoundry.org/ontology/cvdo" + "@id": "https://registry.bio2kg.org/resource/mirbase" }, { - "@id": "https://fairsharing.org/FAIRsharing.2basyz" + "@id": "http://www.wikidata.org/entity/P2870" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CVDO" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/miRBase" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hmgte8" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "rna" }, { - "@value": "ontology" + "@value": "gene" }, { - "@value": "cardiology" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/OpenLHS/CVDO" - }, - "https://bioregistry.io/schema/#0000005": "0000546", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CVDO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cvdo.owl" + "@id": "http://www.mirbase.org/" }, + "https://bioregistry.io/schema/#0000005": "MI0026471", + "https://bioregistry.io/schema/#0000006": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1", + "https://bioregistry.io/schema/#0000008": "^MI\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3336-2476" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CVDO_", + "https://bioregistry.io/schema/#0000024": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CVDO_0000546" + "@id": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=MI0026471" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cvdo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mgnify.proj", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "mirbase" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100010585", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CL", + "@id": "https://www.obofoundry.org/ontology/mfmo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp", + "@id": "https://registry.bio2kg.org/resource/cattleqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocarta.pathway", + "@id": "http://agroportal.lirmm.fr/ontologies/BCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_357", + "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ctd.chemical", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/ctd" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CTD Chemical" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/ctd.chemical" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ctd.chemical" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CTD.CHEMICAL" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ctdbase.org/" - }, - "https://bioregistry.io/schema/#0000005": "D001151", - "https://bioregistry.io/schema/#0000006": "http://ctdbase.org/detail.go?type=chem&acc=$1", - "https://bioregistry.io/schema/#0000008": "^[CD]\\d+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/mesh" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://ctdbase.org/detail.go?type=chem&acc=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://ctdbase.org/detail.go?type=chem&acc=D001151" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ctd.chemical" + "@id": "https://registry.bio2kg.org/resource/rvd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/ma", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.gene", + "@id": "https://registry.identifiers.org/registry/orthodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/echobase", + "@id": "https://bioregistry.io/registry/molbase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products.", + "http://purl.org/dc/terms/description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EchoBASE post-genomic database for Escherichia coli" + "@value": "Molbase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/echobase" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011646" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/EchoBASE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ECHOBASE" - }, - { - "@id": "https://www.uniprot.org/database/DB-0020" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/echobase" + "@id": "https://registry.identifiers.org/registry/molbase" }, { - "@id": "https://registry.bio2kg.org/resource/echobase" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE" }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.york.ac.uk/" + "@id": "http://www.molbase.com/" }, - "https://bioregistry.io/schema/#0000005": "EB0170", - "https://bioregistry.io/schema/#0000006": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1", - "https://bioregistry.io/schema/#0000008": "^EB\\d+$", + "https://bioregistry.io/schema/#0000005": "128796-39-4", + "https://bioregistry.io/schema/#0000006": "http://www.molbase.com/en/index.php?app=search&search_keyword=$1", + "https://bioregistry.io/schema/#0000008": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=", + "https://bioregistry.io/schema/#0000024": "http://www.molbase.com/en/index.php?app=search&search_keyword=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0170" + "@id": "http://www.molbase.com/en/index.php?app=search&search_keyword=128796-39-4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "echobase" + "@value": "molbase" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/FBOL", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.h8r843", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } + "@id": "https://orcid.org/0000-0002-4366-3088", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pier Luigi Buttigieg" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "pier.buttigieg@awi.de" + }, + { + "@value": "p.buttigieg@gmail.com" + } + ] }, { - "@id": "http://www.wikidata.org/entity/P6689", + "@id": "https://registry.bio2kg.org/resource/pw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ztvs34", + "@id": "https://fairsharing.org/FAIRsharing.c6vhm3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://edamontology.org/data_1040", + "@id": "https://www.obofoundry.org/ontology/ogsf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.RNA", + "@id": "http://aber-owl.net/ontology/EFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.PROTOCOL", + "@id": "https://registry.bio2kg.org/resource/dpvweb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/ximbio", + "@id": "https://bioregistry.io/registry/hgnc.genefamily", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ximbio" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio" + "@value": "HGNC gene family" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/hgnc.genefamily" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.genefamily" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HGNC.GENEFAMILY" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ximbio.com" + "@id": "http://www.genenames.org" }, - "https://bioregistry.io/schema/#0000005": "151022", - "https://bioregistry.io/schema/#0000006": "https://ximbio.com/reagent/$1", + "https://bioregistry.io/schema/#0000005": "2029", + "https://bioregistry.io/schema/#0000006": "https://www.genenames.org/cgi-bin/genefamilies/set/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://ximbio.com/reagent/", + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/hgnc.genegroup" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "hgnc.family" + }, + { + "@value": "GFAM" + }, + { + "@value": "HGNC_GROUP" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.genenames.org/cgi-bin/genefamilies/set/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://ximbio.com/reagent/151022" + "@id": "https://www.genenames.org/cgi-bin/genefamilies/set/2029" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ximbio" + "@value": "hgnc.genefamily" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339", + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/tgd", + "@id": "https://registry.identifiers.org/registry/gwascentral.phenotype", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/scopus", + "@id": "https://bioregistry.io/registry/imgt.primerdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research.", + "http://purl.org/dc/terms/description": "The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scopus Researcher" + "@value": "IMGT/PRIMER-DB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.0a674c" + "@id": "https://www.re3data.org/repository/r3d100012535" }, { - "@id": "http://www.wikidata.org/entity/P1153" + "@id": "https://registry.bio2kg.org/resource/imgt.primerdb" } ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "dna" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.scopus.com" + "@id": "http://imgt.org/IMGTPrimerDB/" }, - "https://bioregistry.io/schema/#0000005": "56305849200", - "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/authid/detail.uri?authorId=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "IPP900099", + "https://bioregistry.io/schema/#0000006": "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "scopus.author" - }, - "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/authid/detail.uri?authorId=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/imgt.primerdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.scopus.com/authid/detail.uri?authorId=56305849200" + "@id": "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=IPP900099&origin=view&source=PrList" }, "https://bioregistry.io/schema/#0000029": { - "@value": "scopus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.image", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/intact", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "imgt.primerdb" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4ndncv", + "@id": "https://bioregistry.io/registry/mao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000020", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A person" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Person" + "@value": "Multiple alignment" }, - "http://www.w3.org/2002/07/owl#equivalentClass": { - "@id": "http://xmlns.com/foaf/0.1/Person" - } - }, - { - "@id": "https://registry.identifiers.org/registry/piroplasma", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/VSAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/oci", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/mao" + }, + { + "@id": "https://www.obofoundry.org/ontology/mao" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "sequence" + }, + { + "@value": "ontology" + }, + { + "@value": "obo" + }, + { + "@value": "alignment" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www-igbmc.u-strasbg.fr/BioInfo/MAO/mao.html" + }, + "https://bioregistry.io/schema/#0000005": "MAO:0000061", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAO_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nfc0f489e36ce453cac43f91508c63245" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "mao" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "_:Nfc0f489e36ce453cac43f91508c63245", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Julie Thompson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "julie@igbmc.u-strasbg.fr" } }, { - "@id": "https://bioregistry.io/registry/interfil", + "@id": "https://bioregistry.io/registry/sharkipedia.trend", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/sharkipedia" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sharkipedia/sharkipedia" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Intermediate Filament Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/interfil" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" + "@value": "Sharkipedia Trend" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.interfil.org" + "@id": "https://www.sharkipedia.org/" }, - "https://bioregistry.io/schema/#0000005": "NM_006262", - "https://bioregistry.io/schema/#0000006": "http://www.interfil.org/details.php?id=$1", + "https://bioregistry.io/schema/#0000005": "3447", + "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/trends/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1710-8256" + }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.interfil.org/details.php?id=", + "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/trends/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.interfil.org/details.php?id=NM_006262" + "@id": "https://www.sharkipedia.org/trends/3447" }, "https://bioregistry.io/schema/#0000029": { - "@value": "interfil" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/trichdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2064", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/asin", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8372", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "sharkipedia.trend" } }, { - "@id": "https://orcid.org/0000-0003-4494-839X", + "@id": "https://bioregistry.io/metaregistry/bartoc", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)." + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bartoc.org/en/node/2021" + }, + { + "@id": "https://bartoc.org/en/node/720" + }, + { + "@id": "https://bartoc.org/en/node/1237" + }, + { + "@id": "https://bartoc.org/en/node/822" + }, + { + "@id": "https://bartoc.org/en/node/216" + }, + { + "@id": "https://bartoc.org/en/node/20052" + }, + { + "@id": "https://bartoc.org/en/node/20434" + }, + { + "@id": "https://bartoc.org/en/node/2053" + }, + { + "@id": "https://bartoc.org/en/node/1897" + }, + { + "@id": "https://bartoc.org/en/node/558" + }, + { + "@id": "https://bartoc.org/en/node/576" + }, + { + "@id": "https://bartoc.org/en/node/400" + }, + { + "@id": "https://bartoc.org/en/node/20430" + }, + { + "@id": "https://bartoc.org/en/node/2054" + }, + { + "@id": "https://bartoc.org/en/node/18951" + }, + { + "@id": "https://bartoc.org/en/node/1028" + }, + { + "@id": "https://bartoc.org/en/node/2022" + }, + { + "@id": "https://bartoc.org/en/node/509" + }, + { + "@id": "https://bartoc.org/en/node/454" + }, + { + "@id": "https://bartoc.org/en/node/18206" + }, + { + "@id": "https://bartoc.org/en/node/18377" + }, + { + "@id": "https://bartoc.org/en/node/571" + }, + { + "@id": "https://bartoc.org/en/node/447" + }, + { + "@id": "https://bartoc.org/en/node/572" + }, + { + "@id": "https://bartoc.org/en/node/109" + }, + { + "@id": "https://bartoc.org/en/node/1915" + }, + { + "@id": "https://bartoc.org/en/node/581" + }, + { + "@id": "https://bartoc.org/en/node/445" + }, + { + "@id": "https://bartoc.org/en/node/1895" + }, + { + "@id": "https://bartoc.org/en/node/449" + }, + { + "@id": "https://bartoc.org/en/node/1940" + }, + { + "@id": "https://bartoc.org/en/node/20428" + }, + { + "@id": "https://bartoc.org/en/node/391" + }, + { + "@id": "https://bartoc.org/en/node/430" + }, + { + "@id": "https://bartoc.org/en/node/20299" + }, + { + "@id": "https://bartoc.org/en/node/17791" + }, + { + "@id": "https://bartoc.org/en/node/549" + }, + { + "@id": "https://bartoc.org/en/node/305" + }, + { + "@id": "https://bartoc.org/en/node/181" + }, + { + "@id": "https://bartoc.org/en/node/1884" + }, + { + "@id": "https://bartoc.org/en/node/528" + }, + { + "@id": "https://bartoc.org/en/node/671" + }, + { + "@id": "https://bartoc.org/en/node/1937" + }, + { + "@id": "https://bartoc.org/en/node/16" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Xeni Kechagioglou" + "@value": "Basic Register of Thesauri, Ontologies & Classifications" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "xeni.kechagioglou@lifewatch.eu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dbsnp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://bartoc.org/" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "181" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://bartoc.org/en/node/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0629-0446" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3", + "@id": "https://www.re3data.org/repository/r3d100012647", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPARC", + "@id": "https://bioregistry.io/metaregistry/biocontext/CMF", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } - }, - { - "@id": "https://registry.identifiers.org/registry/ilx", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + }, + { + "@id": "https://orcid.org/0000-0001-6512-3296", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Peter Midford" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "peteremidford@yahoo.com" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000412", + "@id": "https://bioregistry.io/metaregistry/biocontext/HCVDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ped", + "@id": "https://bioregistry.io/registry/drugbank.bioentity", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/ped.ensemble" - }, - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein Ensemble Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://purl.org/dc/terms/description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.4ef690" + "@id": "https://bioregistry.io/registry/drugbank" }, { - "@id": "https://registry.identifiers.org/registry/ped" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DrugBank Target v4" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "botany" + "@id": "https://registry.identifiers.org/registry/drugbankv4.target" }, { - "@value": "plant genetics" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DRUGBANKV4.TARGET" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://proteinensemble.org/" + "@id": "http://www.drugbank.ca/targets" }, - "https://bioregistry.io/schema/#0000005": "PED00037", - "https://bioregistry.io/schema/#0000006": "https://proteinensemble.org/$1", - "https://bioregistry.io/schema/#0000008": "^PED\\d{5}$", + "https://bioregistry.io/schema/#0000005": "BE0000048", + "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/bio_entities/$1", + "https://bioregistry.io/schema/#0000008": "^BE\\d{7}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://proteinensemble.org/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "drugbankv4.target" + }, + { + "@value": "drugbank.target" + } + ], + "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/bio_entities/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://proteinensemble.org/PED00037" + "@id": "https://go.drugbank.com/bio_entities/BE0000048" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ped" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/po", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "drugbank.bioentity" } }, { - "@id": "https://bioregistry.io/registry/hc.npn", + "@id": "https://bioregistry.io/registry/vmhreaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada.", + "http://purl.org/dc/terms/description": "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Health Canada Natural Product Number" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1107" + "@value": "VMH reaction" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/vmhreaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vmhreaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VMHREACTION" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/search-rechercheReq.do?lang=eng" + "@id": "https://www.vmh.life/" }, - "https://bioregistry.io/schema/#0000005": "18125", - "https://bioregistry.io/schema/#0000006": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "HEX1", + "https://bioregistry.io/schema/#0000006": "https://www.vmh.life/#reaction/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=", + "https://bioregistry.io/schema/#0000024": "https://www.vmh.life/#reaction/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=18125" + "@id": "https://www.vmh.life/#reaction/HEX1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hc.npn" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/dbsnp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/OM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@value": "vmhreaction" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero", + "@id": "https://www.obofoundry.org/ontology/geno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/viralzone", + "@id": "https://bioregistry.io/registry/hamap", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.", + "http://purl.org/dc/terms/description": "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ViralZone" + "@value": "High-quality Automated and Manual Annotation of microbial Proteomes" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/VZ" + "@id": "http://edamontology.org/data_2766" }, { - "@id": "https://registry.identifiers.org/registry/viralzone" + "@id": "https://bioregistry.io/metaregistry/go/resolve/HAMAP" }, { - "@id": "https://fairsharing.org/FAIRsharing.tppk10" + "@id": "https://registry.bio2kg.org/resource/hamap" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hamap" }, { - "@id": "https://www.re3data.org/repository/r3d100013314" + "@id": "https://bioregistry.io/metaregistry/biocontext/HAMAP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viralzone" + "@id": "https://fairsharing.org/FAIRsharing.63m4ss" }, { - "@id": "https://registry.bio2kg.org/resource/vz" + "@id": "https://registry.identifiers.org/registry/hamap" + }, + { + "@id": "https://www.uniprot.org/database/DB-0041" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "virus" - }, - { - "@value": "virology" - }, - { - "@value": "epidemiology" - }, - { - "@value": "molecular biology" + "@value": "life science" }, { - "@value": "life science" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.expasy.org/viralzone/" + "@id": "https://hamap.expasy.org/" }, - "https://bioregistry.io/schema/#0000005": "992", - "https://bioregistry.io/schema/#0000006": "https://viralzone.expasy.org/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "MF_01400", + "https://bioregistry.io/schema/#0000006": "https://hamap.expasy.org/unirule/$1", + "https://bioregistry.io/schema/#0000008": "^MF_\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8528-090X" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "vz" + "@id": "https://orcid.org/0000-0003-2148-9135" }, - "https://bioregistry.io/schema/#0000024": "https://viralzone.expasy.org/", + "https://bioregistry.io/schema/#0000024": "https://hamap.expasy.org/unirule/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://viralzone.expasy.org/992" + "@id": "https://hamap.expasy.org/unirule/MF_01400" }, "https://bioregistry.io/schema/#0000029": { - "@value": "viralzone" + "@value": "hamap" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qrrvyk", + "@id": "https://bioregistry.io/metaregistry/go/resolve/GenBank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.8wm364", + "@id": "https://bioportal.bioontology.org/ontologies/APAONTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIMODB", + "@id": "http://aber-owl.net/ontology/ECG", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/ubio.namebank", + "@id": "https://bioregistry.io/registry/dailymed", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context.", + "http://purl.org/dc/terms/description": "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "uBio NameBank" + "@value": "DailyMed" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/ubio.namebank" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dailymed" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ubio.namebank" + "@id": "https://bioregistry.io/metaregistry/biocontext/DAILYMED" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBIO.NAMEBANK" + "@id": "https://registry.identifiers.org/registry/dailymed" + }, + { + "@id": "https://registry.bio2kg.org/resource/dailymed" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ubio.org" + "@id": "https://dailymed.nlm.nih.gov/dailymed/" }, - "https://bioregistry.io/schema/#0000005": "2555646", - "https://bioregistry.io/schema/#0000006": "http://www.ubio.org/browser/details.php?namebankID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "973a9333-fec7-46dd-8eb5-25738f06ee54", + "https://bioregistry.io/schema/#0000006": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ubio.org/browser/details.php?namebankID=", + "https://bioregistry.io/schema/#0000024": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ubio.org/browser/details.php?namebankID=2555646" + "@id": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=973a9333-fec7-46dd-8eb5-25738f06ee54" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ubio.namebank" + "@value": "dailymed" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DOID", + "@id": "https://bioregistry.io/registry/sepio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for representing the provenance of scientific claims and the evidence that supports them.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-2353-596X", + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/monarch-initiative/SEPIO-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maria Taboada" + "@value": "Scientific Evidence and Provenance Information Ontology" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "maria.taboada@usc.es" - } - }, - { - "@id": "https://registry.identifiers.org/registry/molmedb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/go", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DUO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bartoc.org/en/node/2021", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "http://aber-owl.net/ontology/DCAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/sharkipedia.trend", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.obofoundry.org/ontology/sepio" }, { - "@id": "https://bioregistry.io/registry/sharkipedia" + "@id": "http://aber-owl.net/ontology/SEPIO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SEPIO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SEPIO" + }, + { + "@id": "http://www.ontobee.org/ontology/SEPIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "ontology" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sharkipedia/sharkipedia" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sharkipedia Trend" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.sharkipedia.org/" + "@id": "https://github.com/monarch-initiative/SEPIO-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000048", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SEPIO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/sepio.owl" }, - "https://bioregistry.io/schema/#0000005": "3447", - "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/trends/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1710-8256" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0002-1048-5019" }, - "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/trends/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SEPIO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.sharkipedia.org/trends/3447" + "@id": "http://purl.obolibrary.org/obo/SEPIO_0000048" }, "https://bioregistry.io/schema/#0000029": { - "@value": "sharkipedia.trend" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/flu", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "sepio" } }, { - "@id": "http://www.wikidata.org/entity/P842", + "@id": "https://registry.identifiers.org/registry/pmr", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arrayexpress.platform", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/confident.series", + "@id": "https://bioregistry.io/registry/oryzabase.stage", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating.", + "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ConfIDent Event Series" + "@value": "Oryzabase Stage" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "meetings" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "grouping" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE" }, { - "@value": "metascience" + "@id": "https://registry.identifiers.org/registry/oryzabase.stage" }, { - "@value": "conferences" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.stage" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.confident-conference.org/index.php/Category:Event_Series" + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" }, - "https://bioregistry.io/schema/#0000005": "AAC", - "https://bioregistry.io/schema/#0000006": "https://www.confident-conference.org/index.php/Event_Series:$1", + "https://bioregistry.io/schema/#0000005": "34", + "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1595-3213" - }, - "https://bioregistry.io/schema/#0000024": "https://www.confident-conference.org/index.php/Event_Series:", + "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.confident-conference.org/index.php/Event_Series:AAC" + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/34" }, "https://bioregistry.io/schema/#0000029": { - "@value": "confident.series" + "@value": "oryzabase.stage" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM", + "@id": "https://registry.bio2kg.org/resource/cog", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule", + "@id": "https://bioregistry.io/registry/genecards.genenote", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Normal Tissue Expression" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/genenote" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "gene expression" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://genecards.weizmann.ac.il/genenote/" + }, + "https://bioregistry.io/schema/#0000005": "GC06M052656", + "https://bioregistry.io/schema/#0000006": "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$1&data_type=norm2&results=yes", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/genecards.genenote:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=GC06M052656&data_type=norm2&results=yes" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genecards.genenote" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPD", + "@id": "http://aber-owl.net/ontology/ONS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix", + "@id": "http://www.ontobee.org/ontology/ZECO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.re3data.org/repository/r3d100010591", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genatlas", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/APO", + "@id": "https://fairsharing.org/FAIRsharing.zx1td8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XL", + "@id": "https://bioregistry.io/metaregistry/biocontext/DBGAP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/MPIO", + "@id": "https://fairsharing.org/FAIRsharing.5NhJFK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/schema/#0000027", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "An expanded example URL for a resource or metaresource." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, + "@id": "https://orcid.org/0000-0001-5528-0087", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has resource example" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@value": "Roman Laskowski" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": { - "@id": "http://rdfs.org/ns/void#exampleResource" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "roman@ebi.ac.uk" } }, { - "@id": "https://bioregistry.io/registry/cto", + "@id": "https://bioregistry.io/registry/t4fs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials.", + "http://purl.org/dc/terms/description": "A terminology for the skills necessary to make data FAIR and to keep it FAIR.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ClinicalTrialOntology/CTO" + "@id": "https://github.com/terms4fairskills/FAIRterminology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Clinical Trials Ontology" + "@value": "terms4FAIRskills" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/cto" - }, - { - "@id": "http://www.ontobee.org/ontology/CTO" + "@id": "http://www.ontobee.org/ontology/T4FS" }, { - "@id": "https://fairsharing.org/FAIRsharing.qp211a" + "@id": "https://fairsharing.org/FAIRsharing.fb99fa" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto" + "@id": "https://www.obofoundry.org/ontology/t4fs" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CTO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs" }, { - "@id": "http://aber-owl.net/ontology/CTO" + "@id": "http://aber-owl.net/ontology/T4FS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "preclinical studies" + "@value": "subject agnostic" }, { - "@value": "neurobiology" + "@value": "ontology" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ClinicalTrialOntology/CTO/" + "@id": "https://github.com/terms4fairskills/FAIRterminology" }, - "https://bioregistry.io/schema/#0000005": "0000022", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CTO_$1", + "https://bioregistry.io/schema/#0000005": "0000127", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/T4FS_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cto.owl" + "@id": "http://purl.obolibrary.org/obo/t4fs.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9896-3531" + "@id": "https://orcid.org/0000-0002-7702-4495" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CTO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/T4FS_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CTO_0000022" + "@id": "http://purl.obolibrary.org/obo/T4FS_0000127" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cto" + "@value": "t4fs" } }, { - "@id": "https://bioregistry.io/registry/dbvar.variant", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Variants in dbVar.", + "@id": "https://bioregistry.io/metaregistry/biocontext/WORFDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Genomic Structural Variation - Variant" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/dbvar" - }, - "https://bioregistry.io/schema/#0000005": "nsv3875336", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/dbvar/variants/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "dbvar.variants" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/dbvar/variants/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/dbvar/variants/nsv3875336" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dbvar.variant" - } - }, - { - "@id": "https://orcid.org/0000-0002-9298-3168", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Liz Allen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "info@casrai.org" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/kcris", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biolink", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A modeling paradigm-specific registry of prefixes and their URL expansions" }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GSID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.drug" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ScopusID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UMLSSG" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MetaCyc" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/wgs" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/COG" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.CHEMICAL" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.food" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AspGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/interpro" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/doi" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-DATA" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBVocab" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYECO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-TOPIC" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ResearchID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CPT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-FORMAT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcat" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ECTO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTOPDB" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBls" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isni" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HANCESTRO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CAID" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/LOINC" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SNOMEDCT" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/INO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ChemBank" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA_PROPERTY" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/bioschemas" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/pav" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mmmp.biomaps" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/XPO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PomBase" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CLINVAR" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.DISEASE" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Korean Clinical Research Information Service" + "@value": "Biolink Model Registry" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cris.nih.go.kr" + "@value": "https://github.com/biolink/biolink-model" }, - "https://bioregistry.io/schema/#0000005": "KCT0008394", - "https://bioregistry.io/schema/#0000008": "^KCT\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "kcris" - } - }, - { - "@id": "http://www.ontobee.org/ontology/XLMOD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/AGRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "https://bioregistry.io/schema/#0000005": { + "@value": "doi" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3583-7340" } }, { - "@id": "https://bioregistry.io/registry/icepo", + "@id": "https://bioregistry.io/registry/opl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. ", + "http://purl.org/dc/terms/description": "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ion Channel Electrophysiology Ontology" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OPL-ontology/OPL" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for Parasite LifeCycle" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/OPL" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OPL" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OPL" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ez2nhb" + }, + { + "@id": "https://www.obofoundry.org/ontology/opl" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl" + }, + { + "@id": "http://www.ontobee.org/ontology/OPL" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "developmental biology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://download.nextprot.org/pub/current_release/controlled_vocabularies/" + "@id": "https://github.com/OPL-ontology/OPL" }, - "https://bioregistry.io/schema/#0000005": "0000002", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/icepo/$1", + "https://bioregistry.io/schema/#0000005": "0000319", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OPL_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://download.nextprot.org/pub/current_release/controlled_vocabularies/icepo.obo" + "@id": "http://purl.obolibrary.org/obo/opl.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/icepo/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2999-0103" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OPL_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/icepo/0000002" + "@id": "http://purl.obolibrary.org/obo/OPL_0000319" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icepo" - } - }, - { - "@id": "https://registry.identifiers.org/registry/wb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "opl" } }, { - "@id": "https://bioregistry.io/registry/pid.pathway", + "@id": "https://bioregistry.io/registry/peroxibase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.", + "http://purl.org/dc/terms/description": "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCI Pathway Interaction Database: Pathway" + "@value": "Peroxibase" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/pid" + "@id": "https://fairsharing.org/FAIRsharing.z1czxj" }, { - "@id": "https://registry.identifiers.org/registry/pid.pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peroxibase" }, { - "@id": "https://fairsharing.org/FAIRsharing.ncgh1j" + "@id": "https://bioregistry.io/metaregistry/biocontext/PEROXIBASE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway" + "@id": "https://registry.identifiers.org/registry/peroxibase" }, { - "@id": "http://edamontology.org/data_2344" + "@id": "https://www.uniprot.org/database/DB-0072" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY" + "@id": "https://registry.bio2kg.org/resource/peroxibase" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "enzyme" }, { "@value": "protein" }, { - "@value": "pathway" - }, - { - "@value": "small molecule" + "@value": "life science" }, { - "@value": "life science" + "@value": "regulation" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pid.nci.nih.gov/" + "@id": "http://peroxibase.toulouse.inra.fr/" }, - "https://bioregistry.io/schema/#0000005": "eff796f3-6195-11e5-8ac5-06603eb7f303", - "https://bioregistry.io/schema/#0000006": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", + "https://bioregistry.io/schema/#0000005": "5282", + "https://bioregistry.io/schema/#0000006": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "pid" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1637-404" }, - "https://bioregistry.io/schema/#0000024": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=", + "https://bioregistry.io/schema/#0000024": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=eff796f3-6195-11e5-8ac5-06603eb7f303" + "@id": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=5282" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pid.pathway" + "@value": "peroxibase" } }, { - "@id": "https://registry.identifiers.org/registry/myco.smeg", + "@id": "https://registry.bio2kg.org/resource/eugenes", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ECO", + "@id": "https://www.obofoundry.org/ontology/upheno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/nbrc", + "@id": "https://www.obofoundry.org/ontology/mod", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast", + "@id": "https://bioportal.bioontology.org/ontologies/OAE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MDM", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "http://www.wikidata.org/entity/P6209", + "@id": "https://orcid.org/0000-0003-1877-1703", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Célia Michotey" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "celia.michotey@inrae.fr" + } + }, + { + "@id": "http://aber-owl.net/ontology/TGMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/horizon_discovery", + "@id": "https://bioregistry.io/registry/drugbank.condition", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/description": "Indications and other conditions in drugbank", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Horizon Discovery cell line collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Horizon_Discovery" + "@value": "DrugBank Condition" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://horizondiscovery.com/" + "@id": "https://go.drugbank.com" }, - "https://bioregistry.io/schema/#0000005": "HD+118-001", - "https://bioregistry.io/schema/#0000006": "https://horizondiscovery.com/en/search?searchterm=$1", + "https://bioregistry.io/schema/#0000005": "DBCOND0066902", + "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/indications/$1", + "https://bioregistry.io/schema/#0000008": "^DBCOND\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://horizondiscovery.com/en/search?searchterm=", + "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/indications/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://horizondiscovery.com/en/search?searchterm=HD+118-001" + "@id": "https://go.drugbank.com/indications/DBCOND0066902" }, "https://bioregistry.io/schema/#0000029": { - "@value": "horizon_discovery" + "@value": "drugbank.condition" } }, { - "@id": "https://bioregistry.io/registry/caro", + "@id": "https://bioregistry.io/registry/prodom", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies.", + "http://purl.org/dc/terms/description": "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/caro" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Common Anatomy Reference Ontology" + "@value": "ProDom" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CARO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro" - }, - { - "@id": "https://www.obofoundry.org/ontology/caro" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3kcgmr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CARO" + "@id": "https://registry.identifiers.org/registry/prodom" }, { - "@id": "http://www.ontobee.org/ontology/CARO" + "@id": "https://registry.bio2kg.org/resource/prodom" }, { - "@id": "http://aber-owl.net/ontology/CARO" + "@id": "https://bioregistry.io/metaregistry/biocontext/PRODOM" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CARO" + "@id": "https://fairsharing.org/FAIRsharing.a8z6gz" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "classification" }, { "@value": "life science" }, { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/caro/" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CARO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/caro.owl" + "@id": "http://prodom.prabi.fr/prodom/current/html/home.php" }, + "https://bioregistry.io/schema/#0000005": "PD10000", + "https://bioregistry.io/schema/#0000006": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1", + "https://bioregistry.io/schema/#0000008": "^PD\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/pco" - }, - { - "@id": "https://bioregistry.io/registry/colao" - }, - { - "@id": "https://bioregistry.io/registry/aism" - }, - { - "@id": "https://bioregistry.io/registry/ehdaa2" - }, - { - "@id": "https://bioregistry.io/registry/lepao" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9114-8737" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CARO_", + "https://bioregistry.io/schema/#0000024": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CARO_0000000" + "@id": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=PD10000" }, "https://bioregistry.io/schema/#0000029": { - "@value": "caro" - } - }, - { - "@id": "https://orcid.org/0000-0001-9114-8737", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Melissa Haendel" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "haendel@ohsu.edu" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "prodom" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PECO", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HsapDv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.TAXONOMY", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/molbase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/biokc", + "@id": "http://edamontology.org/data_1182", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RNACENTRAL", + "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9", + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mimodb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CGD", + "@id": "https://bioregistry.io/registry/pibase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of structurally defined protein interfaces" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/pibase" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://salilab.org/pibase" + }, + "https://bioregistry.io/schema/#0000005": "21692", + "https://bioregistry.io/schema/#0000006": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=21692" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pibase" } }, { - "@id": "http://aber-owl.net/ontology/LBO", + "@id": "http://aber-owl.net/ontology/CLO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv", + "@id": "https://registry.identifiers.org/registry/mmmp:biomaps", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MESH", + "@id": "https://fairsharing.org/FAIRsharing.7zffgc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/umbbd.pathway", + "@id": "https://bioregistry.io/registry/geo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCBI Gene Expression Omnibus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://fairsharing.org/FAIRsharing.5hc8vt" }, { - "@id": "https://bioregistry.io/registry/umbbd" + "@id": "http://edamontology.org/data_1147" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GEO" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GEO" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010283" + }, + { + "@id": "http://aber-owl.net/ontology/GEO" + }, + { + "@id": "https://registry.bio2kg.org/resource/geo" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/geo" + }, + { + "@id": "https://registry.identifiers.org/registry/geo" + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EAWAG Biocatalysis/Biodegradation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/umbbd.pathway" + "@value": "transcriptomics" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY" + "@value": "phenomics" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID" + "@value": "genomics" + }, + { + "@value": "life science" + }, + { + "@value": "epigenomics" + }, + { + "@value": "gene expression" + }, + { + "@value": "genome" + }, + { + "@value": "comparative genomics" + }, + { + "@value": "omics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://umbbd.ethz.ch/" + "@id": "https://www.ncbi.nlm.nih.gov/geo/" }, - "https://bioregistry.io/schema/#0000005": "ala", - "https://bioregistry.io/schema/#0000006": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UM-BBD_pathwayID" + "https://bioregistry.io/schema/#0000005": "GDS1234", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1", + "https://bioregistry.io/schema/#0000008": "^G(PL|SM|SE|DS)\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/GEO/5/geo.owl" }, - "https://bioregistry.io/schema/#0000024": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=ala" + "@id": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GDS1234" }, "https://bioregistry.io/schema/#0000029": { - "@value": "umbbd.pathway" - } - }, - { - "@id": "http://www.ontobee.org/ontology/BFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.protein", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "geo" } }, { - "@id": "https://bioregistry.io/registry/aao", + "@id": "https://bioregistry.io/registry/sgd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.", + "http://purl.org/dc/terms/description": "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Amphibian gross anatomy" + "@value": "Saccharomyces Genome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/aao" + "@id": "https://fairsharing.org/FAIRsharing.pzvw40" }, { - "@id": "https://fairsharing.org/FAIRsharing.mxx5rp" + "@id": "https://registry.bio2kg.org/resource/sgd" }, { - "@id": "https://www.obofoundry.org/ontology/aao" + "@id": "https://registry.identifiers.org/registry/sgd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/AAO" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SGD" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010419" + }, + { + "@id": "http://edamontology.org/data_2632" + }, + { + "@id": "http://www.wikidata.org/entity/P3406" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd" + }, + { + "@id": "https://www.uniprot.org/database/DB-0095" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "transcriptomics" }, { - "@value": "obo" + "@value": "nucleotide" }, { - "@value": "ontology" + "@value": "epigenetics" + }, + { + "@value": "life science" + }, + { + "@value": "proteomics" + }, + { + "@value": "eukaryotic" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://github.com/seger/aao" + "@id": "https://www.yeastgenome.org/" }, - "https://bioregistry.io/schema/#0000005": "0000138", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1810-9886" + "https://bioregistry.io/schema/#0000005": "S000002493", + "https://bioregistry.io/schema/#0000006": "https://www.yeastgenome.org/locus/$1", + "https://bioregistry.io/schema/#0000008": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.yeastgenome.org/locus/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.yeastgenome.org/locus/S000002493" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "aao" + "@value": "sgd" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas", + "@id": "https://bioregistry.io/metaregistry/biocontext/OOSTT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/lincs.protein", + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.RULE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/dg.4dfc", + "@id": "http://edamontology.org/data_2766", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/odc.tbi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org", + "http://purl.org/dc/terms/description": "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCI Data Commons Framework Services" + "@value": "Open Data Commons for Traumatic Brain Injury" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.4dfc" + "@id": "https://registry.identifiers.org/registry/odc.tbi" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://nci-crdc.datacommons.io/" + "@id": "https://odc-tbi.org" }, - "https://bioregistry.io/schema/#0000005": "81944ba1-81d0-436e-8552-33d77a27834b", - "https://bioregistry.io/schema/#0000006": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000005": "408", + "https://bioregistry.io/schema/#0000006": "https://odc-tbi.org/data/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/", + "https://bioregistry.io/schema/#0000024": "https://odc-tbi.org/data/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/81944ba1-81d0-436e-8552-33d77a27834b" + "@id": "https://odc-tbi.org/data/408" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dg.4dfc" + "@value": "odc.tbi" } }, { - "@id": "https://bioregistry.io/registry/hl7.v2codesystem", + "@id": "https://bioregistry.io/registry/rism", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR.", + "http://purl.org/dc/terms/description": "RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "HL7 V2 Code Systems" + "@value": "RISM Online" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/rism" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://terminology.hl7.org/codesystems-v2.html" + "@id": "https://rism.digital/" }, - "https://bioregistry.io/schema/#0000005": "0778", - "https://bioregistry.io/schema/#0000006": "http://terminology.hl7.org/CodeSystem/v2-$1", + "https://bioregistry.io/schema/#0000005": "people/11035", + "https://bioregistry.io/schema/#0000006": "https://rism.online/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]+/[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://rism.online/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://rism.online/people/11035" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rism" + } + }, + { + "@id": "https://bioregistry.io/registry/idog", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Integrated Resource for Domestic Dog" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://www.re3data.org/repository/r3d100012176" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ngdc.cncb.ac.cn/idog/" + }, + "https://bioregistry.io/schema/#0000005": "4", + "https://bioregistry.io/schema/#0000006": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://terminology.hl7.org/CodeSystem/v2-", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9922-9723" + }, + "https://bioregistry.io/schema/#0000024": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://terminology.hl7.org/CodeSystem/v2-0778" + "@id": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=4" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hl7.v2codesystem" + "@value": "idog" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rnacentral", + "@id": "https://www.re3data.org/repository/r3d100010586", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/ro", + "@id": "http://aber-owl.net/ontology/ONTOAVIDA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://orcid.org/0000-0002-1635-4810", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pantelis Topalis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "topalis@imbb.forth.gr" + "@id": "http://ecoportal.lifewatch.eu/ontologies/STY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ecoportal" } }, { - "@id": "https://registry.identifiers.org/registry/protonet.cluster", + "@id": "https://registry.identifiers.org/registry/refseq", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/huge", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/zinc", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA", + "@id": "http://aber-owl.net/ontology/VBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kqt2h2", + "@id": "https://cropontology.org/ontology/CO_335", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/ecao", + "@id": "http://aber-owl.net/ontology/AMPHX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grin.taxonomy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/labo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "None", + "http://purl.org/dc/terms/description": "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/echinoderm-ontology/ecao_ontology" + "@id": "https://github.com/OpenLHS/LABO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Echinoderm Anatomy and Development Ontology" + "@value": "clinical LABoratory Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/ecao" + "@id": "https://bioportal.bioontology.org/ontologies/LABO" }, { - "@id": "http://aber-owl.net/ontology/ECAO" + "@id": "https://www.obofoundry.org/ontology/labo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo" }, { - "@id": "http://www.ontobee.org/ontology/ECAO" + "@id": "http://aber-owl.net/ontology/LABO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECAO" + "@id": "http://www.ontobee.org/ontology/LABO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/echinoderm-ontology/ecao_ontology" + "@id": "https://github.com/OpenLHS/LABO" }, - "https://bioregistry.io/schema/#0000005": "0107180", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECAO_$1", + "https://bioregistry.io/schema/#0000005": "0000124", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LABO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ecao.owl" + "@id": "http://purl.obolibrary.org/obo/labo.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://bioregistry.io/registry/opmi" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/ogms" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/omrse" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/omiabis" } ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3625-0955" + "@id": "https://orcid.org/0000-0002-3336-2476" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECAO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LABO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ECAO_0107180" + "@id": "http://purl.obolibrary.org/obo/LABO_0000124" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecao" + "@value": "labo" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331", + "@id": "https://www.uniprot.org/database/DB-0062", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/lipidmaps", + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.PATHWAY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/scopus.publication", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy.", + "http://purl.org/dc/terms/description": "identifier for a source/publication venue (journal, conference, etc) in Scopus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LIPID MAPS" + "@value": "Scopus Publication" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P1156" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://edamontology.org/data_2625" - }, - { - "@id": "https://registry.bio2kg.org/resource/lipidmaps" - }, - { - "@id": "http://www.wikidata.org/entity/P2063" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.cpneh8" - }, - { - "@id": "https://registry.identifiers.org/registry/lipidmaps" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000564" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012315" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/LIPIDMAPS" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "structure" - }, - { - "@value": "taxonomy" - }, - { - "@value": "lipid" - }, - { - "@value": "systems biology" - }, - { - "@value": "endocrinology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "life science" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.lipidmaps.org" + "@id": "https://www.scopus.com/" }, - "https://bioregistry.io/schema/#0000005": "LMPR0102010012", - "https://bioregistry.io/schema/#0000006": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1", - "https://bioregistry.io/schema/#0000008": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$", + "https://bioregistry.io/schema/#0000005": "16129", + "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/sourceid/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{0,11}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "LIPID MAPS" - }, - { - "@value": "LIPID_MAPS_instance" - }, - { - "@value": "LIPID_MAPS_class" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=", + "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/sourceid/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=LMPR0102010012" + "@id": "https://www.scopus.com/sourceid/16129" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lipidmaps" + "@value": "scopus.publication" } }, { - "@id": "https://bioregistry.io/registry/namerxn", + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/biomagresbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/flowrepository", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/unipathway.compound", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).", + "http://purl.org/dc/terms/description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NameRXN" + "@value": "UniPathway Compound" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "text mining" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY.COMPOUND" }, { - "@value": "chemistry" + "@id": "https://registry.identifiers.org/registry/unipathway.compound" }, { - "@value": "reactions" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unipathway.compound" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nextmovesoftware.com/namerxn.html" + "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway" }, - "https://bioregistry.io/schema/#0000005": "4.2.78", + "https://bioregistry.io/schema/#0000005": "UPC04349", + "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1", + "https://bioregistry.io/schema/#0000008": "^UPC\\d{5}$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=UPC04349" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "namerxn" + "@value": "unipathway.compound" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl", + "@id": "https://fairsharing.org/FAIRsharing.ad3137", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/col", + "@id": "https://bioportal.bioontology.org/ontologies/OBA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/AIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sheepqtldb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/mge", + "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/pr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.", + "http://purl.org/dc/terms/description": "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/PROconsortium/PRoteinOntology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Aclame" + "@value": "Protein Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/ACLAME" + "@id": "http://aber-owl.net/ontology/PR" }, { - "@id": "http://edamontology.org/data_2631" + "@id": "https://www.obofoundry.org/ontology/pr" }, { - "@id": "https://registry.bio2kg.org/resource/aclame" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr" }, { - "@id": "https://fairsharing.org/FAIRsharing.5tfcy8" + "@id": "https://fairsharing.org/FAIRsharing.4ndncv" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mge" + "@id": "https://bioregistry.io/metaregistry/biocontext/PR" }, { - "@id": "https://registry.identifiers.org/registry/mge" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PR" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PR" + }, + { + "@id": "http://www.ontobee.org/ontology/PR" + }, + { + "@id": "https://www.uniprot.org/database/DB-0181" + }, + { + "@id": "https://registry.identifiers.org/registry/pr" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr" + }, + { + "@id": "http://www.wikidata.org/entity/P4926" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PR" + }, + { + "@id": "https://registry.bio2kg.org/resource/pr" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "ontology" }, { - "@value": "genome" + "@value": "protein" }, { - "@value": "gene" + "@value": "obo" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://aclame.ulb.ac.be/" + "@id": "http://proconsortium.org" }, - "https://bioregistry.io/schema/#0000005": "2", - "https://bioregistry.io/schema/#0000006": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000023": { - "@value": "aclame" + "https://bioregistry.io/schema/#0000005": "000000024", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PR_$1", + "https://bioregistry.io/schema/#0000008": "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/pr.owl" }, - "https://bioregistry.io/schema/#0000024": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/scdo" + }, + { + "@id": "https://bioregistry.io/registry/pcl" + }, + { + "@id": "https://bioregistry.io/registry/chiro" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/cl" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5809-9523" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "PRO" + }, + { + "@value": "PR" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PR_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:2" + "@id": "http://purl.obolibrary.org/obo/PR_000000024" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mge" + "@value": "pr" } }, { - "@id": "https://bioregistry.io/registry/covid19", + "@id": "https://fairsharing.org/FAIRsharing.jedbbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/seed.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/fbdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/HOM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g4n8sw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mgnify.proj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mampol", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.", + "http://purl.org/dc/terms/description": "The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "COVID-19 Surveillance Ontology" + "@value": "Mammalia Polymorphism Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/mampol" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/COVID19" - }, - { - "@id": "https://registry.identifiers.org/registry/covid19" - }, - { - "@id": "http://aber-owl.net/ontology/COVID19" - } - ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "dna" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://covid19.sfb.uit.no" - }, - "https://bioregistry.io/schema/#0000005": "SFB_COVID19_MW286762", - "https://bioregistry.io/schema/#0000006": "https://covid19.sfb.uit.no/api/records/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+_COVID19_[-\\w]+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/COVID19/3/covid19.owl" + "@id": "http://mampol.uab.es" }, + "https://bioregistry.io/schema/#0000005": "MAMpol005339", + "https://bioregistry.io/schema/#0000006": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6772-2775" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://covid19.sfb.uit.no/api/records/", + "https://bioregistry.io/schema/#0000024": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://covid19.sfb.uit.no/api/records/SFB_COVID19_MW286762" + "@id": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=MAMpol005339" }, "https://bioregistry.io/schema/#0000029": { - "@value": "covid19" + "@value": "mampol" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.FUNGI", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sasbdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mtjvme", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/cadsr", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/emmo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR.", + "http://purl.org/dc/terms/description": "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/emmo-repo/EMMO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cancer Data Standards Registry and Repository" + "@value": "Elementary Multiperspective Material Ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cadsr" - }, - { - "@id": "https://registry.identifiers.org/registry/cadsr" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wiki.nci.nih.gov/display/caDSR/caDSR+Wiki" + "@id": "https://emmo-repo.github.io" }, - "https://bioregistry.io/schema/#0000005": "3771992", - "https://bioregistry.io/schema/#0000006": "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]", - "https://bioregistry.io/schema/#0000008": "^[0-9]*$", + "https://bioregistry.io/schema/#0000005": "03212fd7_abfd_4828_9c8e_62c293052d4b", + "https://bioregistry.io/schema/#0000006": "http://emmo.info/emmo#EMMO_$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cadsr:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1560-809X" + }, + "https://bioregistry.io/schema/#0000024": "http://emmo.info/emmo#EMMO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=3771992]" + "@id": "http://emmo.info/emmo#EMMO_03212fd7_abfd_4828_9c8e_62c293052d4b" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cadsr" - } - }, - { - "@id": "http://aber-owl.net/ontology/VBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "emmo" } }, { - "@id": "http://www.wikidata.org/entity/P11277", + "@id": "http://www.ontobee.org/ontology/CIDO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm", + "@id": "https://registry.identifiers.org/registry/omia", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0001-9018-4680", + "@id": "https://orcid.org/0000-0002-3321-6137", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alistair Miles" + "@value": "Katy Börner" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "alistair.miles@linacre.ox.ac.uk" + "@value": "katy@indiana.edu" } }, { - "@id": "https://registry.identifiers.org/registry/cath", + "@id": "https://registry.bio2kg.org/resource/geneannot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/paleodb", + "@id": "https://www.obofoundry.org/ontology/ehda", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/repeatsdb.structure", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/umls", + "@id": "https://bioregistry.io/registry/oridb.schizo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.", + "http://purl.org/dc/terms/description": "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unified Medical Language System Concept Unique Identifier" + "@value": "OriDB Schizosaccharomyces" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS" - }, - { - "@id": "http://www.wikidata.org/entity/P2892" - }, - { - "@id": "http://edamontology.org/data_1181" - }, - { - "@id": "https://registry.identifiers.org/registry/umls" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO" }, { - "@id": "https://bartoc.org/en/node/20052" + "@id": "https://registry.identifiers.org/registry/oridb.schizo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oridb.schizo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls" + "@id": "http://pombe.oridb.org/index.php" }, - "https://bioregistry.io/schema/#0000005": "C2584994", - "https://bioregistry.io/schema/#0000006": "http://linkedlifedata.com/resource/umls/id/$1", - "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "http://pombe.oridb.org/details.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "UMLS CUI" - }, - { - "@value": "umls.cui" - }, - { - "@value": "UMLS" - }, - { - "@value": "UMLS_CUI" - } - ], - "https://bioregistry.io/schema/#0000024": "http://linkedlifedata.com/resource/umls/id/", + "https://bioregistry.io/schema/#0000024": "http://pombe.oridb.org/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://linkedlifedata.com/resource/umls/id/C2584994" + "@id": "http://pombe.oridb.org/details.php?id=1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "umls" + "@value": "oridb.schizo" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TubercuList", + "@id": "https://registry.bio2kg.org/resource/sprint", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO", + "@id": "https://fairsharing.org/FAIRsharing.bg5xqs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/PPO", + "@id": "https://registry.bio2kg.org/resource/genedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/vdrc", + "@id": "https://bioregistry.io/registry/bacmap.biog", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]", + "http://purl.org/dc/terms/description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vienna Drosophila Resource Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC" + "@value": "BacMap Biography" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "biomaterial supply resource" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog" }, { - "@value": "drosophila" + "@id": "https://registry.identifiers.org/registry/bacmap.biog" }, { - "@value": "fly lines" + "@id": "https://bioregistry.io/metaregistry/biocontext/BACMAP.BIOG" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://stockcenter.vdrc.at/control/main" + "@id": "http://bacmap.wishartlab.com/" }, - "https://bioregistry.io/schema/#0000005": "100291", - "https://bioregistry.io/schema/#0000006": "https://shop.vbc.ac.at/vdrc_store/$1.html", + "https://bioregistry.io/schema/#0000005": "1050", + "https://bioregistry.io/schema/#0000006": "http://bacmap.wishartlab.com/organisms/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vdrc:", + "https://bioregistry.io/schema/#0000024": "http://bacmap.wishartlab.com/organisms/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://shop.vbc.ac.at/vdrc_store/100291.html" + "@id": "http://bacmap.wishartlab.com/organisms/1050" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vdrc" + "@value": "bacmap.biog" } }, { - "@id": "https://bioregistry.io/registry/iso15926", + "@id": "https://bioregistry.io/registry/ped.ensemble", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/ped" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ISO 15926-14" + "@value": "Protein Ensemble Database ensemble" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/ped.ensemble" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://15926.org/home/" + "@id": "https://proteinensemble.org/" }, - "https://bioregistry.io/schema/#0000005": "activityBoundOf", - "https://bioregistry.io/schema/#0000006": "http://standards.iso.org/iso/15926/part14/$1", + "https://bioregistry.io/schema/#0000005": "PED00017e001", + "https://bioregistry.io/schema/#0000006": "https://proteinensemble.org/$1", + "https://bioregistry.io/schema/#0000008": "^PED\\d{5}e\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://standards.iso.org/iso/15926/part14/", + "https://bioregistry.io/schema/#0000024": "https://proteinensemble.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://standards.iso.org/iso/15926/part14/activityBoundOf" + "@id": "https://proteinensemble.org/PED00017e001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iso15926" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/dron", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/grid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "ped.ensemble" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SEPIO", + "@id": "https://bioportal.bioontology.org/ontologies/BKO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10", + "@id": "http://agroportal.lirmm.fr/ontologies/PCO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/kegg.dgroup", + "@id": "https://bioregistry.io/registry/prov", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": " KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PROV Namespace" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "http://aber-owl.net/ontology/PROV" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/biocontext/prov" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/prov" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Drug Group" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.DGROUP" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/reaction/" + "@id": "https://www.w3.org/ns/prov" + }, + "https://bioregistry.io/schema/#0000005": "Activity", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/prov#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://www.w3.org/ns/prov-o" }, - "https://bioregistry.io/schema/#0000005": "DG00301", - "https://bioregistry.io/schema/#0000008": "^DG\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "KEGG_DRUG_GROUP" - }, - { - "@value": "KEGG_DGROUP" - } - ], + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/prov#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/ns/prov#Activity" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.dgroup" + "@value": "prov" } }, { - "@id": "https://www.re3data.org/repository/r3d100010616", + "@id": "http://aber-owl.net/ontology/OHMI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/biomodels.teddy", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/zenodo.record", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology.", + "http://purl.org/dc/terms/description": "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Terminology for Description of Dynamics" + "@value": "Zenodo" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/TEDDY" - }, - { - "@id": "https://registry.bio2kg.org/resource/teddy" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.TEDDY" - }, - { - "@id": "https://registry.identifiers.org/registry/biomodels.teddy" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/TEDDY" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.teddy" + "@id": "https://fairsharing.org/FAIRsharing.wy4egf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy" + "@id": "https://www.re3data.org/repository/r3d100010468" }, { - "@id": "https://fairsharing.org/FAIRsharing.w9jvbt" + "@id": "http://www.wikidata.org/entity/P4901" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" - }, - { - "@value": "systems biology" - }, - { - "@value": "neurophysiology" + "@value": "data management" }, { - "@value": "synthetic biology" + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://teddyontology.sourceforge.net/" + "@id": "https://zenodo.org" }, - "https://bioregistry.io/schema/#0000005": "0000066", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1", + "https://bioregistry.io/schema/#0000005": "4390079", + "https://bioregistry.io/schema/#0000006": "https://zenodo.org/record/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://svn.code.sf.net/p/teddyontology/code/teddy/tags/current/teddy-inferred.owl" - }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Ne15f697bb7944ad0802de233570457b3" + "@id": "https://orcid.org/0000-0001-8135-3489" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, "https://bioregistry.io/schema/#0000023": { - "@value": "teddy" + "@value": "zenodo" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_", + "https://bioregistry.io/schema/#0000024": "https://zenodo.org/record/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_0000066" + "@id": "https://zenodo.org/record/4390079" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biomodels.teddy" + "@value": "zenodo.record" } }, { - "@id": "_:Ne15f697bb7944ad0802de233570457b3", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioModels.net team" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "biomodels-net-support@lists.sf.net" + "@id": "https://www.uniprot.org/database/DB-0084", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://www.wikidata.org/entity/P492", + "@id": "http://aber-owl.net/ontology/EHDAA2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/scopus.affiliation", + "@id": "https://bioregistry.io/registry/shareloc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "identifier for an organisation in author affiliations per Scopus", + "http://purl.org/dc/terms/description": "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Scopus affiliation ID" + "@value": "ShareLoc" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P1155" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://info.sciencedirect.com/scopus/scopus-in-detail/tools/affiliationidentifier" + "@id": "https://shareloc.xyz" + }, + "https://bioregistry.io/schema/#0000005": "000004", + "https://bioregistry.io/schema/#0000006": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/imodpasteur/ShareLoc.XYZ/ontology/shareloc.owl" }, - "https://bioregistry.io/schema/#0000005": "60025709", - "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/affil/profile.uri?afid=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/affil/profile.uri?afid=", + "https://bioregistry.io/schema/#0000024": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.scopus.com/affil/profile.uri?afid=60025709" + "@id": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_000004" }, "https://bioregistry.io/schema/#0000029": { - "@value": "scopus.affiliation" + "@value": "shareloc" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/pmc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PubMed Central" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMCID" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID" - }, - { - "@id": "http://www.wikidata.org/entity/P932" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wpt5mp" - }, - { - "@id": "https://registry.bio2kg.org/resource/pmc" - }, - { - "@id": "https://registry.identifiers.org/registry/pmc" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmc" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "virology" - }, - { - "@value": "epidemiology" - }, - { - "@value": "earth science" - }, - { - "@value": "biomedical science" - }, - { - "@value": "life science" - }, - { - "@value": "environmental science" - }, - { - "@value": "bibliography" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://europepmc.org/" - }, - "https://bioregistry.io/schema/#0000005": "PMC3084216", - "https://bioregistry.io/schema/#0000006": "http://europepmc.org/articles/$1", - "https://bioregistry.io/schema/#0000008": "^PMC\\d+(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1798-9797" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "PMCID" - }, - { - "@value": "PMC" - } - ], - "https://bioregistry.io/schema/#0000024": "http://europepmc.org/articles/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://europepmc.org/articles/PMC3084216" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pmc" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P3406", + "@id": "http://edamontology.org/data_3265", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/registry/ncit", + "@id": "https://registry.bio2kg.org/resource/modeldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011479", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0141", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/stato", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code.", + "http://purl.org/dc/terms/description": "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" + "@id": "https://github.com/ISA-tools/stato" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCI Thesaurus" + "@value": "The Statistical Methods Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NCIT" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit" - }, - { - "@id": "https://registry.bio2kg.org/resource/ncit" - }, - { - "@id": "https://www.obofoundry.org/ontology/ncit" - }, - { - "@id": "http://www.wikidata.org/entity/P1748" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT" + "@id": "https://bioregistry.io/metaregistry/biocontext/STATO" }, { - "@id": "http://aber-owl.net/ontology/NCIT" + "@id": "https://bioportal.bioontology.org/ontologies/STATO" }, { - "@id": "https://fairsharing.org/FAIRsharing.4cvwxa" + "@id": "https://fairsharing.org/FAIRsharing.na5xp" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.206" + "@id": "http://aber-owl.net/ontology/STATO" }, { - "@id": "https://registry.identifiers.org/registry/ncit" + "@id": "https://www.obofoundry.org/ontology/stato" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NCIt" + "@id": "http://www.ontobee.org/ontology/STATO" }, { - "@id": "http://www.ontobee.org/ontology/NCIT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" - }, - { - "@value": "thesaurus" + "@value": "data visualization" }, { - "@value": "preclinical studies" + "@value": "ontology" }, { - "@value": "translational medicine" + "@value": "statistics" }, { "@value": "obo" - }, - { - "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/NCI-Thesaurus/thesaurus-obo-edition" + "@id": "http://stato-ontology.org/" }, - "https://bioregistry.io/schema/#0000005": "C138986", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NCIT_$1", - "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000005": "0000288", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/STATO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ncit.owl" + "@id": "http://purl.obolibrary.org/obo/stato.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000018": [ @@ -128253,1701 +117891,1490 @@ "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "https://bioregistry.io/registry/psdo" }, { "@id": "https://bioregistry.io/registry/ontoavida" - }, - { - "@id": "https://bioregistry.io/registry/ecto" } ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9114-8737" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "NCITm" - }, - { - "@value": "NCITt" - }, - { - "@value": "NCIT" - }, - { - "@value": "NCIT_Thesaurus" - }, - { - "@value": "NCit" - }, - { - "@value": "ncithesaurus" - }, - { - "@value": "NCI_Thesaurus" - }, - { - "@value": "NCI2004_11_17" - }, - { - "@value": "NCI" - }, - { - "@value": "NCIt" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NCIT_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/040gcmg81" + "@id": "https://orcid.org/0000-0003-3499-8262" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/STATO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/NCIT_C138986" + "@id": "http://purl.obolibrary.org/obo/STATO_0000288" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncit" + "@value": "stato" } }, { - "@id": "https://registry.identifiers.org/registry/pr", + "@id": "https://fairsharing.org/FAIRsharing.agvc7y", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bartoc.org/en/node/1895", + "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/EOL", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/linkml", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.bio2kg.org/resource/metnetdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal", + "@id": "https://www.obofoundry.org/ontology/ma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.ontobee.org/ontology/OBIB", + "@id": "https://fairsharing.org/FAIRsharing.9dpd18", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dqnfkg", + "@id": "https://www.obofoundry.org/ontology/omrse", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/aftol.taxonomy", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/drugbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/dc_cl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/phylomedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/MAMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/interfil", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.", + "http://purl.org/dc/terms/description": "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Assembling the Fungal Tree of Life - Taxonomy" + "@value": "Human Intermediate Filament Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/interfil" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/aftol.taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aftol.taxonomy" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AFTOL.TAXONOMY" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://aftol.umn.edu" + "@id": "http://www.interfil.org" }, - "https://bioregistry.io/schema/#0000005": "959", - "https://bioregistry.io/schema/#0000006": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "NM_006262", + "https://bioregistry.io/schema/#0000006": "http://www.interfil.org/details.php?id=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.interfil.org/details.php?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=959" + "@id": "http://www.interfil.org/details.php?id=NM_006262" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aftol.taxonomy" + "@value": "interfil" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniRule", + "@id": "https://registry.identifiers.org/registry/prodom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/nddf", + "@id": "https://bioregistry.io/registry/chmo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements.", + "http://purl.org/dc/terms/description": "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rsc-ontologies/rsc-cmo" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Drug Data File" + "@value": "Chemical Methods Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.208" + "@id": "https://bioportal.bioontology.org/ontologies/CHMO" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NDDF" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo" }, { - "@id": "http://aber-owl.net/ontology/NDDF" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO" }, { - "@id": "https://fairsharing.org/FAIRsharing.8qcbs0" + "@id": "http://www.ontobee.org/ontology/CHMO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/NDDF" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" + "@id": "https://fairsharing.org/FAIRsharing.9j4wh2" }, { - "@value": "medicinal chemistry" + "@id": "http://aber-owl.net/ontology/CHMO" }, { - "@value": "ontology" + "@id": "https://www.obofoundry.org/ontology/chmo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/NDDF" - }, - "https://bioregistry.io/schema/#0000005": "002678", - "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/NDDF/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb500c8d05f814fa9a666feba602bbf01" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/NDDF/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.bioontology.org/ontology/NDDF/002678" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nddf" - } - }, - { - "@id": "_:Nb500c8d05f814fa9a666feba602bbf01", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "First DataBank Customer Support" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cs@firstdatabank.com" - } - }, - { - "@id": "https://bioregistry.io/registry/biosimulators", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/biosimulators/Biosimulators/issues/new/choose" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioSimulators" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/biosimulators" + "@value": "ontology" }, { - "@id": "https://www.re3data.org/repository/r3d100013432" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.pwEima" + "@value": "chemistry" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/rsc-ontologies/rsc-cmo" + }, + "https://bioregistry.io/schema/#0000005": "0002902", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/chmo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@value": "systems biology" + "@id": "https://bioregistry.io/registry/rbo" }, { - "@value": "computational biology" + "@id": "https://bioregistry.io/registry/scdo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biosimulators.org/" - }, - "https://bioregistry.io/schema/#0000005": "vcell", - "https://bioregistry.io/schema/#0000006": "https://biosimulators.org/simulators/$1", - "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9-_]+$", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2605-5080" + "@id": "https://orcid.org/0000-0001-5985-7429" }, - "https://bioregistry.io/schema/#0000024": "https://biosimulators.org/simulators/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHMO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biosimulators.org/simulators/vcell" + "@id": "http://purl.obolibrary.org/obo/CHMO_0002902" }, "https://bioregistry.io/schema/#0000029": { - "@value": "biosimulators" + "@value": "chmo" } }, { - "@id": "https://bioregistry.io/registry/dip", + "@id": "https://bioregistry.io/registry/caloha", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions", + "http://purl.org/dc/terms/description": "This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/calipho-sib/controlled-vocabulary" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Interacting Proteins" + "@value": "CALIPHO Group Ontology of Human Anatomy" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://fairsharing.org/FAIRsharing.qje0v8" - }, - { - "@id": "http://edamontology.org/data_2616" - }, - { - "@id": "https://registry.identifiers.org/registry/dip" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIP" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010670" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.uniprot.org/database/DB-0016" + "@value": "human" }, { - "@id": "https://registry.bio2kg.org/resource/dip" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "interaction" + "@value": "physiology" }, { - "@value": "protein" + "@value": "ontology" }, { - "@value": "biology" + "@value": "anatomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dip.doe-mbi.ucla.edu/" + "@id": "https://github.com/calipho-sib/controlled-vocabulary" + }, + "https://bioregistry.io/schema/#0000005": "TS-0001", + "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/term/$1", + "https://bioregistry.io/schema/#0000008": "^TS-\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/calipho-sib/controlled-vocabulary/master/caloha.obo" }, - "https://bioregistry.io/schema/#0000005": "DIP-743N", - "https://bioregistry.io/schema/#0000006": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1", - "https://bioregistry.io/schema/#0000008": "^DIP(\\:)?\\-\\d{1,}[ENXS]$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0819-0473" + }, + "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/term/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=DIP-743N" + "@id": "https://www.nextprot.org/term/TS-0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dip" - } - }, - { - "@id": "http://edamontology.org/data_2343", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/ICD10CM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/AERO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000017", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "depends on" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_LIGM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "caloha" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GABI", + "@id": "http://www.ontobee.org/ontology/LABO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SAO", + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/p3db.site", + "@id": "https://registry.identifiers.org/registry/fsnp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.haxp7g", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ADCAD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/gecko", + "@id": "https://bioregistry.io/registry/maxo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology to represent genomics cohort attributes.", + "http://purl.org/dc/terms/description": "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/IHCC-cohorts/GECKO" + "@id": "https://github.com/monarch-initiative/MAxO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomics Cohorts Knowledge Ontology" + "@value": "Medical Action Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/GECKO" + "@id": "https://registry.identifiers.org/registry/maxo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko" + "@id": "https://bioportal.bioontology.org/ontologies/MAXO" }, { - "@id": "http://aber-owl.net/ontology/GECKO" + "@id": "http://www.ontobee.org/ontology/MAXO" }, { - "@id": "https://www.obofoundry.org/ontology/gecko" + "@id": "https://fairsharing.org/FAIRsharing.945c78" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GECKO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo" }, { - "@id": "https://fairsharing.org/FAIRsharing.3da56b" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/MAXO" }, { - "@value": "statistics" + "@id": "https://www.obofoundry.org/ontology/maxo" }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { "@value": "obo" }, { - "@value": "ontology" + "@value": "medicine" }, { - "@value": "genomics" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/IHCC-cohorts/GECKO" + "@id": "https://github.com/monarch-initiative/MAxO" }, - "https://bioregistry.io/schema/#0000005": "0000044", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GECKO_$1", + "https://bioregistry.io/schema/#0000005": "0000008", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MAXO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/gecko.owl" + "@id": "http://purl.obolibrary.org/obo/maxo.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4871-5569" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GECKO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GECKO_0000044" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gecko" - } - }, - { - "@id": "https://bioregistry.io/registry/mmp.cat", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MarCat" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.cat" + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://registry.identifiers.org/registry/mmp.cat" + "@id": "https://bioregistry.io/registry/go" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.CAT" + "@id": "https://bioregistry.io/registry/nbo" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/iao" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/obi" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/hp" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mmp.sfb.uit.no/databases/marcat/" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/ecto" }, - "https://bioregistry.io/schema/#0000005": "MMP743597.11", - "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marcat/#/records/$1", - "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marcat/#/records/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7941-2961" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MAXO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://mmp.sfb.uit.no/databases/marcat/#/records/MMP743597.11" + "@id": "http://purl.obolibrary.org/obo/MAXO_0000008" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mmp.cat" + "@value": "maxo" } }, { - "@id": "https://registry.bio2kg.org/resource/ehdaa", + "@id": "https://www.obofoundry.org/ontology/kisao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/col.taiwan", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Identifier (name code) for a taxon in the catalogue of life in taiwan", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Catalogue of Life in Taiwan" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P3088" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://taibnet.sinica.edu.tw/home.php" - }, - "https://bioregistry.io/schema/#0000005": "431472", - "https://bioregistry.io/schema/#0000006": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=431472" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "col.taiwan" + "@id": "http://aber-owl.net/ontology/FOBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.re3data.org/repository/r3d100012629", + "@id": "http://aber-owl.net/ontology/ICD9CM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/planttfdb", + "@id": "https://registry.identifiers.org/registry/did", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.x81wz8", + "@id": "https://registry.bio2kg.org/resource/genbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/glycoepitope", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ipr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jykmkw", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P5806", + "@id": "https://registry.identifiers.org/registry/neurovault.collection", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi", + "@id": "https://bioregistry.io/metaregistry/biocontext/PAZAR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/iceo", + "@id": "https://bioregistry.io/registry/cath.domain", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning.", + "http://purl.org/dc/terms/description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ontoice/ICEO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrative and Conjugative Element Ontology" + "@value": "CATH domain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/ICEO" - }, - { - "@id": "https://www.obofoundry.org/ontology/iceo" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICEO" + "@id": "https://registry.identifiers.org/registry/cath.domain" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo" + "@id": "http://edamontology.org/data_1040" }, { - "@id": "http://aber-owl.net/ontology/ICEO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.DOMAIN" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ontoice/ICEO" - }, - "https://bioregistry.io/schema/#0000005": "0000712_1", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ICEO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}(_\\d)?$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/iceo.owl" + "@id": "http://www.cathdb.info/" }, + "https://bioregistry.io/schema/#0000005": "1cukA01", + "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/domain/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3781-6962" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ICEO_", + "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/domain/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ICEO_0000712_1" + "@id": "http://www.cathdb.info/domain/1cukA01" }, "https://bioregistry.io/schema/#0000029": { - "@value": "iceo" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dp0jvd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "cath.domain" } }, { - "@id": "https://bioregistry.io/registry/ncbiprotein", + "@id": "https://bioregistry.io/registry/envo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.", + "http://purl.org/dc/terms/description": "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EnvironmentOntology/envo" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Protein" + "@value": "Environment Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIProtein" + "@id": "https://registry.identifiers.org/registry/envo" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBI_NP" + "@id": "http://www.ontobee.org/ontology/ENVO" }, { - "@id": "https://registry.identifiers.org/registry/ncbiprotein" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO" }, { - "@id": "https://registry.bio2kg.org/resource/ncbi.protein" + "@id": "https://bioportal.bioontology.org/ontologies/ENVO" }, { - "@id": "https://www.re3data.org/repository/r3d100010776" + "@id": "http://agroportal.lirmm.fr/ontologies/ENVO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein" + "@id": "https://fairsharing.org/FAIRsharing.azqskx" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo" + }, + { + "@id": "http://aber-owl.net/ontology/ENVO" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo" + }, + { + "@id": "https://www.obofoundry.org/ontology/envo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "life science" + }, + { + "@value": "obo" + }, + { + "@value": "ecology" + }, + { + "@value": "epidemiology" + }, + { + "@value": "nutritional science" + }, + { + "@value": "ontology" + }, + { + "@value": "environmental science" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "protein" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/protein" + "@id": "http://environmentontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "09200010", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ENVO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7,8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/envo.owl" }, - "https://bioregistry.io/schema/#0000005": "CAA71118.1", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1", - "https://bioregistry.io/schema/#0000008": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/protein/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02meqm098" + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/ncbitaxon" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/chebi" + }, + { + "@id": "https://bioregistry.io/registry/po" + } + ], + "https://bioregistry.io/schema/#0000018": [ + { + "@id": "https://bioregistry.io/registry/rbo" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/scdo" + }, + { + "@id": "https://bioregistry.io/registry/cdno" + }, + { + "@id": "https://bioregistry.io/registry/ecocore" + }, + { + "@id": "https://bioregistry.io/registry/ecto" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4366-3088" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ENVO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1" + "@id": "http://purl.obolibrary.org/obo/ENVO_09200010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbiprotein" + "@value": "envo" } }, { - "@id": "https://registry.identifiers.org/registry/gmd.profile", + "@id": "http://www.wikidata.org/entity/P592", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PCO", + "@id": "http://aber-owl.net/ontology/CLYH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/lgai.cede", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR).", + "@id": "https://www.obofoundry.org/ontology/emapa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.aI1J5W", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/civic.eid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/civic" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LG Chemical Entity Detection Dataset (LGCEDe)" + "@value": "CIViC Evidence" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/lgai.cede" + "@id": "https://registry.identifiers.org/registry/civic.eid" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.lgresearch.ai" + "@id": "https://civicdb.org/" }, - "https://bioregistry.io/schema/#0000005": "LGCEDe-S-000002244", - "https://bioregistry.io/schema/#0000006": "https://s3.us-east-2.amazonaws.com/lg.cede/$1", - "https://bioregistry.io/schema/#0000008": "^LGCEDe-S-\\d{9}$", + "https://bioregistry.io/schema/#0000005": "1199", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/evidence/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://s3.us-east-2.amazonaws.com/lg.cede/", + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/evidence/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://s3.us-east-2.amazonaws.com/lg.cede/LGCEDe-S-000002244" + "@id": "https://civicdb.org/links/evidence/1199" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lgai.cede" + "@value": "civic.eid" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.280", + "@id": "http://edamontology.org/data_2609", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://orcid.org/0000-0002-1798-9797", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jeff Beck" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "beck@ncbi.nlm.nih.gov" } }, { - "@id": "https://registry.identifiers.org/registry/arraymap", + "@id": "https://registry.identifiers.org/registry/snp2tfbs", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/atol", + "@id": "https://bioregistry.io/registry/omim", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production.", + "http://purl.org/dc/terms/description": "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/omim.ps" + }, "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Animal Trait Ontology for Livestock" + "@value": "Online Mendelian Inheritance in Man" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol" + "@id": "https://bioportal.bioontology.org/ontologies/OMIM" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/ATOL" + "@id": "https://fairsharing.org/FAIRsharing.b084yh" }, { - "@id": "http://aber-owl.net/ontology/ATOL" + "@id": "https://registry.bio2kg.org/resource/omim" }, { - "@id": "https://fairsharing.org/FAIRsharing.wsfk5z" + "@id": "http://aber-owl.net/ontology/OMIM" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ATOL" + "@id": "http://edamontology.org/data_1153" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/OMIM" + }, + { + "@id": "https://www.uniprot.org/database/DB-0062" + }, + { + "@id": "https://registry.identifiers.org/registry/mim" + }, + { + "@id": "http://www.wikidata.org/entity/P492" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim" + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIM" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" + "@value": "biomedical science" }, { "@value": "ontology" }, { - "@value": "animal husbandry" + "@value": "gene" }, { - "@value": "life science" + "@value": "gene expression" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.atol-ontology.com" - }, - "https://bioregistry.io/schema/#0000005": "0002233", - "https://bioregistry.io/schema/#0000006": "http://opendata.inra.fr/ATOL/ATOL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://sicpa-web.cati.inrae.fr/ontologies/visualisation/ontologie/atol/creation_fichier_owl.php?filename=atol.owl" + "@id": "https://omim.org/" }, + "https://bioregistry.io/schema/#0000005": "603903", + "https://bioregistry.io/schema/#0000006": "https://omim.org/MIM:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8310-5195" + "@id": "https://orcid.org/0000-0002-1780-5230" }, - "https://bioregistry.io/schema/#0000024": "http://opendata.inra.fr/ATOL/ATOL_", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "mim" + }, + { + "@value": "OMIM" + } + ], + "https://bioregistry.io/schema/#0000024": "https://omim.org/MIM:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://opendata.inra.fr/ATOL/ATOL_0002233" + "@id": "https://omim.org/MIM:603903" }, "https://bioregistry.io/schema/#0000029": { - "@value": "atol" + "@value": "omim" } }, { - "@id": "https://bioregistry.io/registry/uniref", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodb.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/datanator.reaction", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view.", + "http://purl.org/dc/terms/description": "\tDatanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniRef" + "@value": "Datanator Reaction" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/datanator.reaction" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/uniref" - }, - { - "@id": "http://edamontology.org/data_2346" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011518" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/" + "@id": "https://icahn.mssm.edu/" }, - "https://bioregistry.io/schema/#0000005": "UniRef90_P00750", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/uniref/$1", - "https://bioregistry.io/schema/#0000008": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$", + "https://bioregistry.io/schema/#0000005": "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N", + "https://bioregistry.io/schema/#0000006": "https://datanator.info/reaction/$1", + "https://bioregistry.io/schema/#0000008": "^.*?--%3E.*?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/uniref/", + "https://bioregistry.io/schema/#0000024": "https://datanator.info/reaction/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/uniref/UniRef90_P00750" + "@id": "https://datanator.info/reaction/XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uniref" + "@value": "datanator.reaction" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4cvwxa", + "@id": "https://fairsharing.org/FAIRsharing.cc3f2x", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://orcid.org/0000-0003-3562-7869", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "General Enquiries" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "depod@embl.de" - } - }, - { - "@id": "http://www.wikidata.org/entity/P3289", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012041", + "@id": "https://fairsharing.org/FAIRsharing.493qns", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/sep", + "@id": "https://www.obofoundry.org/ontology/pr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/salk", + "@id": "https://bioregistry.io/registry/fobi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Scientific research institute for neuroscience, genetics, immunology, plant biology and more.", + "http://purl.org/dc/terms/description": "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Salk Institute for Biological Studies" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.salk.edu/" - }, - "https://bioregistry.io/schema/#0000005": "037727", - "https://bioregistry.io/schema/#0000006": "https://abrc.osu.edu/stocks/number/SALK_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/efo" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology" }, - "https://bioregistry.io/schema/#0000024": "https://abrc.osu.edu/stocks/number/SALK_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://abrc.osu.edu/stocks/number/SALK_037727" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Food-Biomarker Ontology" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "salk" - } - }, - { - "@id": "https://bioregistry.io/registry/dragondb.protein", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dragondb" + "@id": "https://bioportal.bioontology.org/ontologies/FOBI" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi" + }, + { + "@id": "http://aber-owl.net/ontology/FOBI" + }, + { + "@id": "https://www.obofoundry.org/ontology/fobi" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/FOBI" + }, + { + "@id": "http://www.ontobee.org/ontology/FOBI" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DragonDB Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.protein" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.PROTEIN" + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology" + }, + "https://bioregistry.io/schema/#0000005": "030719", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FOBI_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4,6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fobi.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://registry.identifiers.org/registry/dragondb.protein" + "@id": "https://bioregistry.io/registry/chebi" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.antirrhinum.net/" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6466-877X" }, - "https://bioregistry.io/schema/#0000005": "AMDEFA", - "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.protein:", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FOBI_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=AMDEFA;class=Peptide" + "@id": "http://purl.obolibrary.org/obo/FOBI_030719" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dragondb.protein" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.efp5v2", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/alzgene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CCO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ROLEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/zfs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@value": "fobi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYTOZOME.LOCUS", + "@id": "https://bioregistry.io/registry/beiresources", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BEI Resources" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BEI_Resources" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "cell lines" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.beiresources.org" + }, + "https://bioregistry.io/schema/#0000005": "MRA-253", + "https://bioregistry.io/schema/#0000006": "https://www.beiresources.org/Catalog/cellBanks/$1.aspx", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "BEI_Resources" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/beiresources:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.beiresources.org/Catalog/cellBanks/MRA-253.aspx" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "beiresources" } }, { - "@id": "https://fairsharing.org/FAIRsharing.vgw1m6", + "@id": "https://fairsharing.org/FAIRsharing.1jKfji", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bartoc.org/en/node/454", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" - } - }, - { - "@id": "http://aber-owl.net/ontology/AMPHX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/covid19", + "@id": "https://registry.identifiers.org/registry/ubio.namebank", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.aqhv1y", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/COB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bugbase.protocol", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ncbi" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo", + "@id": "https://www.uniprot.org/database/DB-0082", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "http://www.ontobee.org/ontology/NDF-RT", + "@id": "http://www.ontobee.org/ontology/EHDAA2", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9sb9qh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/gc", + "@id": "https://bioregistry.io/registry/nfdi4chem.osmo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.", + "http://purl.org/dc/terms/description": "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genetic Code" + "@value": "Ontology for simulation, modelling, and optimization" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html" - }, - "https://bioregistry.io/schema/#0000005": "11", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "gc_id" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG11" + "@id": "https://zenodo.org/record/5237774#.YXq72hxCRGo" }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "gc" + "@value": "nfdi4chem.osmo" } }, { - "@id": "https://bioregistry.io/registry/drugcentral", + "@id": "https://bioregistry.io/registry/coriell", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action.", + "http://purl.org/dc/terms/description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Drug Central" + "@value": "Coriell Institute for Medical Research" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0239" - }, - { - "@id": "https://registry.identifiers.org/registry/drugcentral" - }, - { - "@id": "http://www.wikidata.org/entity/P11198" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3me82d" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/DrugCentral" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "drug discovery" - }, - { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell" }, { - "@value": "pharmacy" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CORIELL" }, { - "@value": "pharmacology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/coriell" }, { - "@value": "drug development" + "@id": "https://bioregistry.io/metaregistry/biocontext/Coriell" }, { - "@value": "drug repositioning" + "@id": "https://registry.identifiers.org/registry/coriell" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://drugcentral.org" + "@id": "http://ccr.coriell.org/" }, - "https://bioregistry.io/schema/#0000005": "307", - "https://bioregistry.io/schema/#0000006": "http://drugcentral.org/drugcard/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "GM17027", + "https://bioregistry.io/schema/#0000006": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]{2}\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6195-6976" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "Drug_Central" - }, - "https://bioregistry.io/schema/#0000024": "http://drugcentral.org/drugcard/", + "https://bioregistry.io/schema/#0000024": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://drugcentral.org/drugcard/307" + "@id": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM17027" }, "https://bioregistry.io/schema/#0000029": { - "@value": "drugcentral" + "@value": "coriell" } }, { - "@id": "https://bioregistry.io/registry/umls.aui", + "@id": "https://registry.identifiers.org/registry/atfdb.family", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ohmi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus.", + "http://purl.org/dc/terms/description": "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Unified Medical Language System Atomic Unique Identifier" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ohmi-ontology/ohmi" }, - "https://bioregistry.io/schema/#0000005": "A0118748", - "https://bioregistry.io/schema/#0000008": "^A\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UMLS_ICD9CM_2005_AUI" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of Host-Microbiome Interactions" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "umls.aui" - } - }, - { - "@id": "https://bioregistry.io/registry/kegg.enzyme", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links.", - "http://purl.org/dc/terms/isPartOf": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://www.ontobee.org/ontology/OHMI" }, { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi" + }, + { + "@id": "https://www.obofoundry.org/ontology/ohmi" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cz9cnp" + }, + { + "@id": "http://aber-owl.net/ontology/OHMI" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHMI" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Enzyme" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_ENZYME" + "@value": "life science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/dbget-bin/www_bfind?enzyme" + "@id": "https://github.com/ohmi-ontology/ohmi" }, - "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/dbget-bin/www_bget?ec:$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/eccode" + "https://bioregistry.io/schema/#0000005": "0000460", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OHMI_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ohmi.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/dbget-bin/www_bget?ec:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OHMI_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OHMI_0000460" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.enzyme" + "@value": "ohmi" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn", + "@id": "https://fairsharing.org/FAIRsharing.9j4wh2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.re3data.org/repository/r3d100011663", + "@id": "https://registry.identifiers.org/registry/ydpm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/MEDDRA", + "@id": "http://aber-owl.net/ontology/LPT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm", + "@id": "https://registry.bio2kg.org/resource/fma", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SALMON", + "@id": "http://www.wikidata.org/entity/P1692", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.bio2kg.org/resource/virgen", + "@id": "https://registry.bio2kg.org/resource/door", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.wikidata.org/entity/P7333", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/gwascentral.marker", + "@id": "https://bioregistry.io/registry/nlx.res", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GWAS Central Marker" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.MARKER" - }, + "http://purl.org/dc/terms/description": "NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://registry.identifiers.org/registry/gwascentral.marker" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Digital Resources" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "software and information systems" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gwascentral.org/markers" + "@id": "https://github.com/SciCrunch/NIF-Ontology" }, - "https://bioregistry.io/schema/#0000005": "HGVM15354", - "https://bioregistry.io/schema/#0000006": "https://www.gwascentral.org/marker/$1", - "https://bioregistry.io/schema/#0000008": "^HGVM\\d+$", + "https://bioregistry.io/schema/#0000005": "090924", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_res_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.gwascentral.org/marker/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXRES" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_res_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.gwascentral.org/marker/HGVM15354" + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_res_090924" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gwascentral.marker" - } - }, - { - "@id": "https://registry.identifiers.org/registry/medgen", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "nlx.res" } }, { - "@id": "https://registry.bio2kg.org/resource/vo", + "@id": "https://www.re3data.org/repository/r3d100012265", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://www.ontobee.org/ontology/OMIT", + "@id": "https://registry.identifiers.org/registry/nbrc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.af5655", + "@id": "https://bioregistry.io/registry/uniprot.arba", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Association-Rule-Based Annotator" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/go/resolve/ARBA" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.uniprot.org/arba" + }, + "https://bioregistry.io/schema/#0000005": "ARBA00000001", + "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/arba/$1", + "https://bioregistry.io/schema/#0000008": "^ARBA\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "arba" + }, + "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/arba/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.uniprot.org/arba/ARBA00000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "uniprot.arba" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/HCPCS", + "@id": "https://semanticscience.org/resource/CHEMINF_000406", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/cheminf" } }, { - "@id": "https://registry.identifiers.org/registry/wikipathways", + "@id": "https://bioregistry.io/metaregistry/biocontext/ATCVET", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100011277", + "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/phrr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]", + "@id": "http://aber-owl.net/ontology/REXO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Philippine Health Research Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://registry.healthresearch.ph" - }, - "https://bioregistry.io/schema/#0000005": "4195", - "https://bioregistry.io/schema/#0000006": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=4195" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phrr" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem", + "@id": "https://registry.identifiers.org/registry/p3db.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2773", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/schema", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0002-5111-7263", - "http://www.w3.org/2000/01/rdf-schema#label": [ - { - "@value": "Paul Schofield" - }, - { - "@value": "Dr Paul Schofield" - } - ], - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "pns12@hermes.cam.ac.uk" - }, - { - "@value": "PNS12@cam.ac.uk" - } - ] + "@id": "https://bioregistry.io/metaregistry/biolink" + } }, { - "@id": "https://www.re3data.org/repository/r3d100012461", + "@id": "https://registry.identifiers.org/registry/bitterdb.cpd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/citexplore", + "@id": "http://www.wikidata.org/entity/P698", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/mw.study", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes.", + "http://purl.org/dc/terms/description": "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CiteXplore" + "@value": "Metabolomics Workbench Study" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.619eqr" - }, - { - "@id": "https://registry.bio2kg.org/resource/citexplore" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genetics" + "@id": "https://registry.identifiers.org/registry/mw.study" }, { - "@value": "preclinical studies" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mw.study" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/metaregistry/biocontext/MW.STUDY" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/citexplore/" + "@id": "http://www.metabolomicsworkbench.org/" }, - "https://bioregistry.io/schema/#0000005": "C6155", - "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/CTX/$1", + "https://bioregistry.io/schema/#0000005": "ST000900", + "https://bioregistry.io/schema/#0000006": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1", + "https://bioregistry.io/schema/#0000008": "^ST[0-9]{6}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2353-596X" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "CTX" - }, - "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/CTX/", + "https://bioregistry.io/schema/#0000024": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://europepmc.org/article/CTX/C6155" + "@id": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=ST000900" }, "https://bioregistry.io/schema/#0000029": { - "@value": "citexplore" + "@value": "mw.study" } }, { - "@id": "https://registry.bio2kg.org/resource/t3db", + "@id": "https://registry.bio2kg.org/resource/wikipedia", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.vr52p3", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0003-3456-2493", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Yaroslav Halchenko" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "yoh@dartmouth.edu" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c886cd", + "@id": "http://edamontology.org/data_2758", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/polbase", + "@id": "https://bioportal.bioontology.org/ontologies/OPMI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS", + "@id": "https://registry.bio2kg.org/resource/compluyeast2dpage", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/span", + "@id": "https://bioregistry.io/registry/runbiosimulations", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.", + "http://purl.org/dc/terms/description": "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Span" + "@value": "runBioSimulations" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/runbiosimulations" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "upper-level ontology" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf" + "@id": "https://icahn.mssm.edu/" }, + "https://bioregistry.io/schema/#0000005": "5fde96bdc5f1aa9ff0cce18a", + "https://bioregistry.io/schema/#0000006": "https://run.biosimulations.org/simulations/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-z]{24,24}$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://run.biosimulations.org/simulations/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://run.biosimulations.org/simulations/5fde96bdc5f1aa9ff0cce18a" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "span" + "@value": "runbiosimulations" } }, { - "@id": "http://aber-owl.net/ontology/RNAO", + "@id": "http://www.ontobee.org/ontology/SIBO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/smiles", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions.", + "@id": "https://bioregistry.io/metaregistry/biocontext/ABS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/timvdm/OpenSMILES/blob/master/discussion_summary.txt" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Simplified molecular-input line-entry system" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P233" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.qv4b3c" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.daylight.com/dayhtml/doc/theory/theory.smiles.html" - }, - "https://bioregistry.io/schema/#0000005": "CC2(C)C\\1CCC(C)/C=C/12", - "https://bioregistry.io/schema/#0000006": "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8ef12b59b027479eb344e1d2a05132be" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/smiles:", - "https://bioregistry.io/schema/#0000029": { - "@value": "smiles" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "_:N8ef12b59b027479eb344e1d2a05132be", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tim Vandermeersch" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "tim.vandermeersch@gmail.com" + "@id": "http://aber-owl.net/ontology/FIX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/om", + "@id": "https://bioregistry.io/registry/virmirdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging", + "http://purl.org/dc/terms/description": "A database containing predicted viral miRNA candidate hairpins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HajoRijgersberg/OM" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of units of Measure" + "@value": "Vir-Mir db" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/OM" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/OM" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/virmirdb" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/OM" + "@value": "rna" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/om" + "@value": "structure" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/HajoRijgersberg/OM" + "@id": "http://alk.ibms.sinica.edu.tw" }, - "https://bioregistry.io/schema/#0000005": "Dimension", - "https://bioregistry.io/schema/#0000006": "http://www.ontology-of-units-of-measure.org/resource/om-2/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/HajoRijgersberg/OM/master/om-2.0.rdf" + "https://bioregistry.io/schema/#0000005": "11002", + "https://bioregistry.io/schema/#0000006": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbitaxon" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N77a0b5ac24044f6e9515254331151ed1" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "http://www.ontology-of-units-of-measure.org/resource/om-2/", + "https://bioregistry.io/schema/#0000024": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ontology-of-units-of-measure.org/resource/om-2/Dimension" + "@id": "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=11002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "om" - } - }, - { - "@id": "_:N77a0b5ac24044f6e9515254331151ed1", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hajo Rijgersberg" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "hajo.rijgersberg@wur.nl" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f928f1", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "virmirdb" } }, { - "@id": "https://bioregistry.io/registry/yrcpdr", + "@id": "https://bioregistry.io/registry/dip", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.", + "http://purl.org/dc/terms/description": "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "YRC PDR" + "@value": "Database of Interacting Proteins" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.karvzj" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip" }, { - "@id": "https://registry.identifiers.org/registry/yrcpdr" + "@id": "https://registry.identifiers.org/registry/dip" }, { - "@id": "https://www.re3data.org/repository/r3d100010975" + "@id": "http://edamontology.org/data_2616" }, { - "@id": "https://registry.bio2kg.org/resource/yrc" + "@id": "https://fairsharing.org/FAIRsharing.qje0v8" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr" + "@id": "https://registry.bio2kg.org/resource/dip" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR" + "@id": "https://www.uniprot.org/database/DB-0016" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010670" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DIP" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -129955,806 +119382,788 @@ "@value": "protein" }, { - "@value": "life science" + "@value": "interaction" }, { - "@value": "computational biology" + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.yeastrc.org/pdr/" + "@id": "https://dip.doe-mbi.ucla.edu/" }, - "https://bioregistry.io/schema/#0000005": "2673500", - "https://bioregistry.io/schema/#0000006": "http://yeastrc.org/pdr/viewProtein.do?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "DIP-743N", + "https://bioregistry.io/schema/#0000006": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1", + "https://bioregistry.io/schema/#0000008": "^DIP(\\:)?\\-\\d{1,}[ENXS]$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1633-8607" - }, - "https://bioregistry.io/schema/#0000024": "http://yeastrc.org/pdr/viewProtein.do?id=", + "https://bioregistry.io/schema/#0000024": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://yeastrc.org/pdr/viewProtein.do?id=2673500" + "@id": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=DIP-743N" }, "https://bioregistry.io/schema/#0000029": { - "@value": "yrcpdr" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "dip" } }, { - "@id": "https://bioregistry.io/registry/mod", + "@id": "https://bioregistry.io/registry/insdc.sra", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.", + "http://purl.org/dc/terms/description": "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/HUPO-PSI/psi-mod-CV" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Protein modification" + "@value": "Sequence Read Archive" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOD" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod" - }, - { - "@id": "http://aber-owl.net/ontology/PSIMOD" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD" - }, - { - "@id": "https://registry.bio2kg.org/resource/psi.mod" - }, - { - "@id": "https://registry.identifiers.org/registry/mod" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MOD" + "@id": "https://fairsharing.org/FAIRsharing.g7t2hv" }, { - "@id": "https://www.obofoundry.org/ontology/mod" + "@id": "https://bioregistry.io/metaregistry/biocontext/INSDC.SRA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mod" + "@id": "https://registry.identifiers.org/registry/insdc.sra" }, { - "@id": "https://fairsharing.org/FAIRsharing.2m4ms9" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.sra" }, { - "@id": "http://www.ontobee.org/ontology/MOD" + "@id": "https://www.re3data.org/repository/r3d100010775" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "virology" }, { - "@value": "protein" + "@value": "biology" }, { - "@value": "life science" + "@value": "epidemiology" }, { - "@value": "molecule" + "@value": "genomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.psidev.info/MOD" - }, - "https://bioregistry.io/schema/#0000005": "01467", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MOD_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mod.owl" + "@id": "https://www.ncbi.nlm.nih.gov/sra" }, + "https://bioregistry.io/schema/#0000005": "SRX000007", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/sra/$1", + "https://bioregistry.io/schema/#0000008": "^[SED]R[APRSXZ]\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0045-7698" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "PSI-MOD" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MOD_", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/sra/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MOD_01467" + "@id": "https://www.ncbi.nlm.nih.gov/sra/SRX000007" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mod" + "@value": "insdc.sra" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/microscope", + "@id": "https://registry.identifiers.org/registry/gnd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/protclustdb", + "@id": "https://bioregistry.io/registry/glida.gpcr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GLIDA GPCR" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/glida.gpcr" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.GPCR" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.gpcr" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/" + }, + "https://bioregistry.io/schema/#0000005": "ACM1_HUMAN", + "https://bioregistry.io/schema/#0000006": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z-_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=ACM1_HUMAN" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "glida.gpcr" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma", + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBMED", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6wf1zw", + "@id": "https://fairsharing.org/FAIRsharing.p52pzj", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr", + "@id": "https://bioregistry.io/metaregistry/biocontext/prov", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/adw", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/depod", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/CHIRO", + "@id": "https://registry.bio2kg.org/resource/dictybase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dff3ef", + "@id": "https://orcid.org/0000-0002-8844-9165", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/fao.asfis" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Damion Dooley" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "damion_dooley@sfu.ca" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012688", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_370", + "@id": "https://bioregistry.io/metaregistry/biocontext/VBASE2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo", + "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/phylomedb", + "@id": "https://registry.identifiers.org/registry/gold.genome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPROT.ISOFORM", + "@id": "https://bioregistry.io/registry/viroligo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The VirOligo database (1) is part of an effort to provide methods suitable for assessing what viruses are present in samples. Such methods should faciliate studies of the spatial and temporal distribution of viruses and their diversity at any one time and place.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VirOligo" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/viroligo" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://viroligo.okstate.edu" + }, + "https://bioregistry.io/schema/#0000005": "BM0456", + "https://bioregistry.io/schema/#0000006": "http://viroligo.okstate.edu/main.php?vid=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://viroligo.okstate.edu/main.php?vid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://viroligo.okstate.edu/main.php?vid=BM0456" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "viroligo" } }, { - "@id": "http://aber-owl.net/ontology/CRISP", + "@id": "https://www.uniprot.org/database/DB-0251", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/registry/irefweb", + "@id": "https://bioregistry.io/registry/facebase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived.", + "http://purl.org/dc/terms/description": "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "iRefWeb" + "@value": "FaceBase Data Repository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.t31wcb" + "@id": "https://www.re3data.org/repository/r3d100013263" }, { - "@id": "https://registry.identifiers.org/registry/irefweb" + "@id": "https://fairsharing.org/FAIRsharing.mqvqde" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB" + "@id": "https://bioregistry.io/metaregistry/biocontext/FACEBASE" }, { - "@id": "https://registry.bio2kg.org/resource/irefweb" + "@id": "https://registry.identifiers.org/registry/facebase" }, { - "@id": "https://www.re3data.org/repository/r3d100012725" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/facebase" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "genetics" }, { - "@value": "protein" + "@value": "medicine" }, { - "@value": "interaction" + "@value": "epigenetics" + }, + { + "@value": "anatomy" + }, + { + "@value": "developmental biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://wodaklab.org/iRefWeb/" + "@id": "https://www.facebase.org" }, - "https://bioregistry.io/schema/#0000005": "617102", - "https://bioregistry.io/schema/#0000006": "http://wodaklab.org/iRefWeb/interaction/show/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "FB00000917", + "https://bioregistry.io/schema/#0000006": "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1", + "https://bioregistry.io/schema/#0000008": "^FB\\d{8}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://wodaklab.org/iRefWeb/interaction/show/", + "https://bioregistry.io/schema/#0000024": "https://www.facebase.org/data/record/#1/isa:dataset/accession=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://wodaklab.org/iRefWeb/interaction/show/617102" + "@id": "https://www.facebase.org/data/record/#1/isa:dataset/accession=FB00000917" }, "https://bioregistry.io/schema/#0000029": { - "@value": "irefweb" + "@value": "facebase" } }, { - "@id": "http://www.ontobee.org/ontology/PO", + "@id": "https://registry.bio2kg.org/resource/tigrfams", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.marinum", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/clinicaltrials", + "@id": "https://registry.bio2kg.org/resource/kegg.compound", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qx2rvz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://aber-owl.net/ontology/NOMEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/bitbucket", + "@id": "https://bioportal.bioontology.org/ontologies/DERMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/pmdb", + "@id": "https://bioregistry.io/registry/ontoneo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-5699-0515", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rafael Richards" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ontoneo-project/Ontoneo" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rmrich5@gmail.com" - } - }, - { - "@id": "https://orcid.org/0000-0003-4614-562X", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pierre Grenon" + "@value": "Obstetric and Neonatal Ontology" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pierre.grenon@ifomis.uni-saarland.de" + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ONTONEO" + }, + { + "@id": "https://www.obofoundry.org/ontology/ontoneo" + }, + { + "@id": "http://www.ontobee.org/ontology/ONTONEO" + }, + { + "@id": "http://aber-owl.net/ontology/ONTONEO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5a4y1y" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "obo" + }, + { + "@value": "obstetrics" + }, + { + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ontoneo.com" + }, + "https://bioregistry.io/schema/#0000005": "00000098", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONTONEO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ontoneo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2338-8872" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONTONEO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ONTONEO_00000098" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ontoneo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION", + "@id": "https://bioportal.bioontology.org/ontologies/MMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.obofoundry.org/ontology/lepao", + "@id": "https://www.uniprot.org/database/DB-0030", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.bio2kg.org/resource/niaest", + "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mgi", + "@id": "https://bioregistry.io/registry/gnpis", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.", + "http://purl.org/dc/terms/description": "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Genome Informatics" + "@value": "GnpIS" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/mgi" - }, - { - "@id": "https://www.uniprot.org/database/DB-0060" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010266" - }, - { - "@id": "http://edamontology.org/data_3274" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MGI" - }, - { - "@id": "https://registry.bio2kg.org/resource/mgi" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fcwyhz" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi" - }, - { - "@id": "http://www.wikidata.org/entity/P671" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "animal model" - }, - { - "@value": "function" - }, - { - "@value": "pathway" - }, - { - "@value": "expression" - }, - { - "@value": "life science" - }, - { - "@value": "image" - }, - { - "@value": "genetics" - }, - { - "@value": "gold standard" - }, - { - "@value": "blast" - }, - { - "@value": "phenotype" - }, - { - "@value": "human health" - }, - { - "@value": "ontology and terminology" - }, - { - "@value": "strain" - }, - { - "@value": "genome" - }, - { - "@value": "pathology" - }, - { - "@value": "orthology" - }, - { - "@value": "gene" - }, - { - "@value": "human disease" - }, - { - "@value": "model" - }, - { - "@value": "tumor" - }, - { - "@value": "recombinase" - }, - { - "@value": "sequence" - }, - { - "@value": "single nucleotide polymorphism" + "@id": "https://fairsharing.org/FAIRsharing.dw22y3" }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gnpis" }, { - "@value": "molecular neuroanatomy resource" + "@id": "https://www.re3data.org/repository/r3d100012647" }, { - "@value": "genotype" + "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS" }, { - "@value": "data analysis service" + "@id": "https://registry.identifiers.org/registry/gnpis" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.informatics.jax.org/" + "@id": "https://urgi.versailles.inra.fr/gnpis/" }, - "https://bioregistry.io/schema/#0000005": "6017782", - "https://bioregistry.io/schema/#0000006": "http://www.informatics.jax.org/accession/MGI:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "AY109603", + "https://bioregistry.io/schema/#0000006": "https://urgi.versailles.inra.fr/gnpis/#result/term=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "MGI" - }, - { - "@value": "MGD" - } - ], - "https://bioregistry.io/schema/#0000024": "http://www.informatics.jax.org/accession/MGI:", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3001-4908" + }, + "https://bioregistry.io/schema/#0000024": "https://urgi.versailles.inra.fr/gnpis/#result/term=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.informatics.jax.org/accession/MGI:6017782" + "@id": "https://urgi.versailles.inra.fr/gnpis/#result/term=AY109603" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mgi" + "@value": "gnpis" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDODEN", + "@id": "http://www.ontobee.org/ontology/CHIRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kkq6pw", + "@id": "http://aber-owl.net/ontology/XAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/drugbank.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Reactions in drugbank", + "@id": "https://www.uniprot.org/database/DB-0162", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://orcid.org/0000-0002-6704-7538", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DrugBank Reaction" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://go.drugbank.com" - }, - "https://bioregistry.io/schema/#0000005": "1537", - "https://bioregistry.io/schema/#0000006": "https://go.drugbank.com/reactions/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://go.drugbank.com/reactions/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://go.drugbank.com/reactions/1537" + "@value": "Zhiliang Hu" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "drugbank.reaction" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "zhu@iastate.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cattleqtldb", + "@id": "https://www.obofoundry.org/ontology/cro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/metanetx.compartment", + "@id": "https://registry.identifiers.org/registry/greengenes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/oclc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.", + "http://purl.org/dc/terms/description": "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MetaNetX compartment" + "@value": "Online Computer Library Center WorldCat" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oclc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT" + "@id": "https://registry.identifiers.org/registry/oclc" }, { - "@id": "https://registry.identifiers.org/registry/metanetx.compartment" + "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.metanetx.org/" + "@id": "https://www.oclc.org/en/about.html" }, - "https://bioregistry.io/schema/#0000005": "MNXC15", - "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/comp_info/$1", - "https://bioregistry.io/schema/#0000008": "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$", + "https://bioregistry.io/schema/#0000005": "634515043", + "https://bioregistry.io/schema/#0000006": "https://www.worldcat.org/oclc/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/comp_info/", + "https://bioregistry.io/schema/#0000024": "https://www.worldcat.org/oclc/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.metanetx.org/comp_info/MNXC15" + "@id": "https://www.worldcat.org/oclc/634515043" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metanetx.compartment" + "@value": "oclc" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kg1x4z", + "@id": "https://fairsharing.org/FAIRsharing.KcCjL7", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA", + "@id": "https://registry.identifiers.org/registry/arachnoserver", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/SGN", + "@id": "https://bioregistry.io/metaregistry/go/resolve/MetaCyc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://orcid.org/0000-0002-8876-128X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jianmin Wu" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wujm@bjmu.edu.cn" - } - }, - { - "@id": "http://www.ontobee.org/ontology/DISDRIV", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/ICD9CM", + "@id": "https://bioportal.bioontology.org/ontologies/ATO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.DISEASE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/vfb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Virtual Fly Brain" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb" - }, - { - "@id": "https://registry.identifiers.org/registry/vfb" - }, + "@id": "https://orcid.org/0000-0002-9415-5104", + "http://www.w3.org/2000/01/rdf-schema#label": [ { - "@id": "https://fairsharing.org/FAIRsharing.nzaz6z" + "@value": "Frederic Bastian" }, { - "@id": "https://www.re3data.org/repository/r3d100011373" + "@value": "Frédéric Bastian" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/mbox": [ { - "@value": "life science" + "@value": "bgee@sib.swiss" }, { - "@value": "neurobiology" + "@value": "frederic.bastian@unil.ch" } - ], + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SEED.REACTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/smid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "C. elegans Small Molecule Identifier Database" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://VirtualFlyBrain.org" + "@id": "https://smid-db.org/" }, - "https://bioregistry.io/schema/#0000005": "00000001", - "https://bioregistry.io/schema/#0000006": "http://virtualflybrain.org/reports/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z]{8}$", + "https://bioregistry.io/schema/#0000005": "137", + "https://bioregistry.io/schema/#0000006": "https://smid-db.org/smid/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0173-9080" + "https://bioregistry.io/schema/#0000023": { + "@value": "SMID-DB" }, - "https://bioregistry.io/schema/#0000024": "http://virtualflybrain.org/reports/", + "https://bioregistry.io/schema/#0000024": "https://smid-db.org/smid/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://virtualflybrain.org/reports/00000001" + "@id": "https://smid-db.org/smid/137" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vfb" + "@value": "smid" } }, { - "@id": "https://bioregistry.io/registry/mro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/IEDB/MRO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MHC Restriction Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://orcid.org/0000-0002-8719-7760", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioportal.bioontology.org/ontologies/MRO" + "@id": "https://bioregistry.io/registry/cpt" }, { - "@id": "http://aber-owl.net/ontology/MRO" + "@id": "https://bioregistry.io/registry/ncats.bioplanet" }, { - "@id": "https://fairsharing.org/FAIRsharing.k893xa" + "@id": "https://bioregistry.io/registry/ddinter.drug" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro" + "@id": "https://bioregistry.io/registry/agrkb" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sierra Moxon" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11277", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P665", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pombase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0181", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/jws", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "JWS Online" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/jws" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MRO" + "@id": "https://bioregistry.io/metaregistry/biocontext/JWS" }, { - "@id": "http://www.ontobee.org/ontology/MRO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jws" }, { - "@id": "https://www.obofoundry.org/ontology/mro" + "@id": "https://registry.bio2kg.org/resource/jws" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "immunology" - }, - { - "@value": "obo" + "@value": "pathway" }, { - "@value": "ontology" + "@value": "model" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/IEDB/MRO" - }, - "https://bioregistry.io/schema/#0000005": "0000634", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mro.owl" + "@id": "http://jjj.biochem.sun.ac.za/models/" }, + "https://bioregistry.io/schema/#0000005": "achcar11", + "https://bioregistry.io/schema/#0000006": "https://jjj.bio.vu.nl/models/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8457-6693" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MRO_", + "https://bioregistry.io/schema/#0000024": "https://jjj.bio.vu.nl/models/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MRO_0000634" + "@id": "https://jjj.bio.vu.nl/models/achcar11" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mro" + "@value": "jws" } }, { - "@id": "https://www.uniprot.org/database/DB-0027", + "@id": "https://bioregistry.io/metaregistry/biocontext/STRING", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/XL", + "@id": "https://registry.identifiers.org/registry/lipidbank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer", + "@id": "https://registry.bio2kg.org/resource/ipi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phytozome.locus", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/hovergen", + "@id": "https://bioregistry.io/schema/#0000021", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The reviewer of a prefix" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has reviewer" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000020" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/compulyeast", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/pdb.ligand", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees.", + "http://purl.org/dc/terms/description": "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Homologous Vertebrate Genes Database" + "@value": "PDB ligand" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hovergen" + "@id": "https://registry.identifiers.org/registry/pdb.ligand" }, { - "@id": "https://registry.identifiers.org/registry/hovergen" + "@id": "https://registry.bio2kg.org/resource/pdbligand" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN" + "@id": "http://www.wikidata.org/entity/P3636" }, { - "@id": "https://fairsharing.org/FAIRsharing.dg1f0e" + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB.LIGAND" }, { - "@id": "https://registry.bio2kg.org/resource/hovergen" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -130762,866 +120171,1133 @@ "@value": "protein" }, { - "@value": "life science" + "@value": "interaction" }, { - "@value": "dna" + "@value": "structure" }, { - "@value": "gene" + "@value": "small molecule" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pbil.univ-lyon1.fr/databases/hovergen.php" + "@id": "http://www.pdb.org/" }, - "https://bioregistry.io/schema/#0000005": "HBG004341", - "https://bioregistry.io/schema/#0000006": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN", - "https://bioregistry.io/schema/#0000008": "^HBG\\d+$", + "https://bioregistry.io/schema/#0000005": "TRQ", + "https://bioregistry.io/schema/#0000006": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2836-3463" + "https://bioregistry.io/schema/#0000023": { + "@value": "PDB_CHEM_ID" }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hovergen:", + "https://bioregistry.io/schema/#0000024": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=HBG004341&db=HOVERGEN" + "@id": "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=TRQ" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hovergen" + "@value": "pdb.ligand" } }, { - "@id": "https://registry.identifiers.org/registry/hcvdb", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pigqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/subtilist", + "@id": "https://bioportal.bioontology.org/ontologies/SENSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://aber-owl.net/ontology/OBIB", + "@id": "https://bioregistry.io/metaregistry/go/resolve/MeSH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/registry/skm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-9943-2342", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stress Knowledge Map" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/skm" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nib.si/eng/" - }, - "https://bioregistry.io/schema/#0000005": "rx00408", - "https://bioregistry.io/schema/#0000006": "https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary", - "https://bioregistry.io/schema/#0000008": "^rx[0-9]{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/skm:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://skm.nib.si/api/pss/reactions?reaction_id=rx00408&return_field=summary" + "@value": "EOL Secretariat" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "skm" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "secretariat@eol.org" } }, { - "@id": "https://registry.identifiers.org/registry/arxiv", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://registry.identifiers.org/registry/crop2ml", + "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SITEX", + "@id": "https://www.obofoundry.org/ontology/omp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES", + "@id": "https://registry.bio2kg.org/resource/biosystems", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/kegg.rclass", + "@id": "https://bioregistry.io/registry/cmf", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CranioMaxilloFacial ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://www.obofoundry.org/ontology/cmf" }, { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "https://bioregistry.io/metaregistry/biocontext/CMF" + }, + { + "@id": "http://www.ontobee.org/ontology/CMF" + }, + { + "@id": "http://aber-owl.net/ontology/CMF" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Reaction Class" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.RCLASS" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.genome.jp/kegg/reaction/" - }, - "https://bioregistry.io/schema/#0000005": "RC00001", - "https://bioregistry.io/schema/#0000008": "^RC\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "KEGG_REACTION_CLASS" + "@value": "ontology" }, { - "@value": "KEGG_RCLASS" + "@value": "obo" } ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://code.google.com/p/craniomaxillofacial-ontology/" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CMF_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5889-4463" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CMF_", "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.rclass" + "@value": "cmf" } }, { - "@id": "https://registry.bio2kg.org/resource/vbase2", + "@id": "https://fairsharing.org/FAIRsharing.nygmp7", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://edamontology.org/data_3264", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniParc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_370", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.qv4b3c", + "@id": "https://bioregistry.io/registry/rxno", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rsc-ontologies/rxno" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Name Reaction Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/RXNO" + }, + { + "@id": "http://www.ontobee.org/ontology/RXNO" + }, + { + "@id": "http://www.wikidata.org/entity/P2106" + }, + { + "@id": "http://aber-owl.net/ontology/RXNO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno" + }, + { + "@id": "https://www.obofoundry.org/ontology/rxno" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.w4tncg" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RXNO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "molecular chemistry" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/rsc-ontologies/rxno" + }, + "https://bioregistry.io/schema/#0000005": "0000253", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RXNO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/rxno.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5985-7429" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RXNO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/RXNO_0000253" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rxno" } }, { - "@id": "https://registry.identifiers.org/registry/aftol.taxonomy", + "@id": "https://registry.identifiers.org/registry/mesh.2013", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P715", + "@id": "https://bioregistry.io/metaregistry/biocontext/GRIN.TAXONOMY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P1929", + "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://edamontology.org/data_2625", + "@id": "https://registry.identifiers.org/registry/umbbd.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357", + "@id": "http://edamontology.org/data_2620", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://registry.bio2kg.org/resource/pdbsum", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://semanticscience.org/resource/CHEMINF_000564", + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.SUBSTANCE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cheminf" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/unists", + "@id": "http://aber-owl.net/ontology/FLU", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/biozil", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Redistributor of bilogics and biomedical supplies", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0002-4855-2571", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BIOZIL" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life sciences" - }, - { - "@value": "biologics" - }, - { - "@value": "vendor" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.biozol.de/en" - }, - "https://bioregistry.io/schema/#0000005": "ls-c35719-120", - "https://bioregistry.io/schema/#0000006": "https://www.biozol.de/en/product/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.biozol.de/en/product/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.biozol.de/en/product/ls-c35719-120" + "@value": "Matthias Samwald" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biozil" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "matthias.samwald@meduniwien.ac.at" } }, { - "@id": "http://www.ontobee.org/ontology/BSPO", + "@id": "https://bioportal.bioontology.org/ontologies/GNO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt", + "@id": "https://bioregistry.io/metaregistry/biocontext/EMDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/dommino", + "@id": "https://bioregistry.io/registry/kegg.module", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/kegg" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Macromolecular Interactions" + "@value": "KEGG Module" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DOMMINO" + "@id": "https://registry.identifiers.org/registry/kegg.module" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module" }, { - "@id": "https://registry.identifiers.org/registry/dommino" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.MODULE" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://korkinlab.org/dommino" + "@id": "http://www.kegg.jp/kegg/module.html" }, - "https://bioregistry.io/schema/#0000005": "2GC4", - "https://bioregistry.io/schema/#0000006": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", + "https://bioregistry.io/schema/#0000005": "M00002", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^([a-z]{3,5}_)?M\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/", + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/2GC4" + "@id": "http://www.kegg.jp/entry/M00002" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dommino" - } - }, - { - "@id": "http://ecoportal.lifewatch.eu/ontologies/STY", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ecoportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.MOUSE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "kegg.module" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://orcid.org/0000-0002-2668-4821", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Antony Williams" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "williams.antony@epa.gov" } }, { - "@id": "https://bioregistry.io/registry/ncbi.genome", + "@id": "https://bioregistry.io/registry/xao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.", + "http://purl.org/dc/terms/description": "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/xenopus-anatomy/xao" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NCBI Genome" + "@value": "Xenopus Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2787" + "@id": "https://bartoc.org/en/node/581" }, { - "@id": "https://www.re3data.org/repository/r3d100010785" + "@id": "http://aber-owl.net/ontology/XAO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGenome" + "@id": "https://bioportal.bioontology.org/ontologies/XAO" + }, + { + "@id": "http://www.wikidata.org/entity/P4495" + }, + { + "@id": "https://www.obofoundry.org/ontology/xao" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/XAO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.17zapb" + }, + { + "@id": "http://www.ontobee.org/ontology/XAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "anatomy" + }, + { + "@value": "developmental biology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/genome" + "@id": "http://www.xenbase.org/anatomy/xao.do?method=display" + }, + "https://bioregistry.io/schema/#0000005": "0004486", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/xao.owl" }, - "https://bioregistry.io/schema/#0000005": "51", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/genome/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/genome/", + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/xpo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9611-1279" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XAO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/genome/51" + "@id": "http://purl.obolibrary.org/obo/XAO_0004486" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbi.genome" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/smart", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://www.wikidata.org/entity/P2065", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://orcid.org/0000-0003-3248-7899", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sabine Oesterle" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Sabine.Oesterle@sib.swiss" + "@value": "xao" } }, { - "@id": "https://bioregistry.io/registry/lotus", + "@id": "https://bioregistry.io/registry/erm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry.", + "http://purl.org/dc/terms/description": "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "LOTUS Initiative for Open Natural Products Research" + "@value": "European Registry of Materials" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "drugs" + "@id": "https://fairsharing.org/FAIRsharing.c26a4e" }, { - "@value": "chemistry" + "@id": "https://semanticscience.org/resource/CHEMINF_000569" }, { - "@value": "metabolites" + "@id": "https://registry.identifiers.org/registry/erm" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "materials informatics" + }, + { + "@value": "nanotechnology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lotus.naturalproducts.net" + "@id": "https://nanocommons.github.io/identifiers/" }, - "https://bioregistry.io/schema/#0000005": "LTS0004651", - "https://bioregistry.io/schema/#0000006": "https://lotus.naturalproducts.net/compound/lotus_id/$1", - "https://bioregistry.io/schema/#0000008": "^LTS\\d{7}$", + "https://bioregistry.io/schema/#0000005": "ERM00000044", + "https://bioregistry.io/schema/#0000006": "https://nanocommons.github.io/identifiers/registry#$1", + "https://bioregistry.io/schema/#0000008": "^ERM[0-9]{8}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0443-9902" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0001-7542-0286" }, - "https://bioregistry.io/schema/#0000024": "https://lotus.naturalproducts.net/compound/lotus_id/", + "https://bioregistry.io/schema/#0000024": "https://nanocommons.github.io/identifiers/registry#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://lotus.naturalproducts.net/compound/lotus_id/LTS0004651" + "@id": "https://nanocommons.github.io/identifiers/registry#ERM00000044" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lotus" + "@value": "erm" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid", + "@id": "https://bioregistry.io/metaregistry/biocontext/COMBINE.SPECIFICATIONS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/dsm4", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]", + "@id": "https://www.obofoundry.org/ontology/upa", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.environ", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/kegg" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Diagnostic and Statistical Manual of Mental Disorders (4th Edition)" + "@value": "KEGG Environ" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.126" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON" }, { - "@id": "http://www.wikidata.org/entity/P663" + "@id": "https://registry.identifiers.org/registry/kegg.environ" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://en.wikipedia.org/wiki/Diagnostic_and_Statistical_Manual_of_Mental_Disorders#DSM-IV-TR_(2000)" + "@id": "http://www.genome.jp/kegg/drug/environ.html" }, - "https://bioregistry.io/schema/#0000005": "315.1", - "https://bioregistry.io/schema/#0000008": "^\\d+\\.\\d+$", - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000005": "ev:E00032", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^(ev\\:)?E\\d+$", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000023": { - "@value": "dsm-iv" + "@value": "KEGG.EDRUG" + }, + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.kegg.jp/entry/ev:E00032" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dsm4" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pombase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@value": "kegg.environ" } }, { - "@id": "https://bioregistry.io/registry/crop2ml", + "@id": "https://bioregistry.io/registry/tngb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CropMRespository is a database of soil and crop biophysical process models.", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CropMRepository" + "@value": "Telethon Network of Genetic Biobanks" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/crop2ml" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TNGB" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.crop2ml.org" + "@id": "http://biobanknetwork.telethon.it/" }, - "https://bioregistry.io/schema/#0000005": "000000001", - "https://bioregistry.io/schema/#0000006": "http://www.crop2ml.org/cropmdb/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]{9}$", + "https://bioregistry.io/schema/#0000005": "67035", + "https://bioregistry.io/schema/#0000006": "http://biobanknetwork.telethon.it/Sample/View?sampleId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.crop2ml.org/cropmdb/", + "https://bioregistry.io/schema/#0000024": "http://biobanknetwork.telethon.it/Sample/View?sampleId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.crop2ml.org/cropmdb/000000001" + "@id": "http://biobanknetwork.telethon.it/Sample/View?sampleId=67035" }, "https://bioregistry.io/schema/#0000029": { - "@value": "crop2ml" + "@value": "tngb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.BIOASSAY", + "@id": "https://registry.identifiers.org/registry/dandi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/ipi", + "@id": "https://www.obofoundry.org/ontology/sibo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGSF", + "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0003-2699-3066", - "http://purl.org/dc/terms/contributor": [ + "@id": "https://bioregistry.io/collection/0000012", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/noaa" + "@id": "https://bioregistry.io/registry/jrct" }, { - "@id": "https://bioregistry.io/registry/fossilworks.taxon" + "@id": "https://bioregistry.io/registry/slctr" }, { - "@id": "https://bioregistry.io/registry/col.taiwan" + "@id": "https://bioregistry.io/registry/drks" }, { - "@id": "https://bioregistry.io/registry/fossilworks.journal" + "@id": "https://bioregistry.io/registry/tctr" }, { - "@id": "https://bioregistry.io/registry/otol" + "@id": "https://bioregistry.io/registry/irct" + }, + { + "@id": "https://bioregistry.io/registry/anzctr" + }, + { + "@id": "https://bioregistry.io/registry/itmctr" + }, + { + "@id": "https://bioregistry.io/registry/lbctr" + }, + { + "@id": "https://bioregistry.io/registry/chictr" + }, + { + "@id": "https://bioregistry.io/registry/uminctr" + }, + { + "@id": "https://bioregistry.io/registry/isrctn" + }, + { + "@id": "https://bioregistry.io/registry/repec" + }, + { + "@id": "https://bioregistry.io/registry/ctis" + }, + { + "@id": "https://bioregistry.io/registry/hc.trial" + }, + { + "@id": "https://bioregistry.io/registry/ctri" + }, + { + "@id": "https://bioregistry.io/registry/rpcec" + }, + { + "@id": "https://bioregistry.io/registry/kcris" + }, + { + "@id": "https://bioregistry.io/registry/euclinicaltrials" + }, + { + "@id": "https://bioregistry.io/registry/pactr" + }, + { + "@id": "https://bioregistry.io/registry/snctp" + }, + { + "@id": "https://bioregistry.io/registry/clinicaltrials" + }, + { + "@id": "https://bioregistry.io/registry/rebec" + }, + { + "@id": "https://bioregistry.io/registry/phrr" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Meghan Balk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "meghan.balk@gmail.com" + "@value": "Clinical Trial Registries" } }, { - "@id": "https://bioregistry.io/registry/disprot", + "@id": "https://bioregistry.io/registry/to", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/disprot.region" - }, + "http://purl.org/dc/terms/description": "A controlled vocabulary to describe phenotypic traits in plants.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://disprot.github.io/" + "@id": "https://github.com/Planteome/plant-trait-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DisProt" + "@value": "Plant Trait Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100010561" + "@id": "http://agroportal.lirmm.fr/ontologies/TO" }, { - "@id": "https://registry.bio2kg.org/resource/disprot" + "@id": "https://bioregistry.io/metaregistry/biocontext/TO" }, { - "@id": "https://www.uniprot.org/database/DB-0017" + "@id": "http://www.ontobee.org/ontology/TO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt" + "@id": "https://registry.bio2kg.org/resource/pto" }, { - "@id": "https://registry.identifiers.org/registry/disprot" + "@id": "https://www.obofoundry.org/ontology/to" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT" + "@id": "https://bioportal.bioontology.org/ontologies/PTO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot" + "@id": "https://fairsharing.org/FAIRsharing.w69t6r" }, { - "@id": "http://edamontology.org/data_2723" + "@id": "http://aber-owl.net/ontology/TO" }, { - "@id": "https://fairsharing.org/FAIRsharing.dt9z89" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/to" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" + "@value": "ontology" }, { - "@value": "protein" + "@value": "trait" }, { - "@value": "biology" + "@value": "obo" }, { - "@value": "structural biology" + "@value": "plant" }, { - "@value": "biomedical science" + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://browser.planteome.org/amigo" + }, + "https://bioregistry.io/schema/#0000005": "0000630", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/to.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/agro" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1005-8383" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/TO_0000630" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "to" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.RELATIONSHIPS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/toxoplasma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ge8y23", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ctd.chemical", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/collection/0000001", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." + }, + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/biostudies" + }, + { + "@id": "https://bioregistry.io/registry/massive" + }, + { + "@id": "https://bioregistry.io/registry/ega.study" + }, + { + "@id": "https://bioregistry.io/registry/peptideatlas.dataset" + }, + { + "@id": "https://bioregistry.io/registry/pride" + }, + { + "@id": "https://bioregistry.io/registry/ega.dataset" + }, + { + "@id": "https://bioregistry.io/registry/bmrb" + }, + { + "@id": "https://bioregistry.io/registry/emdb" + }, + { + "@id": "https://bioregistry.io/registry/insdc.sra" + }, + { + "@id": "https://bioregistry.io/registry/geo" + }, + { + "@id": "https://bioregistry.io/registry/genbank" + }, + { + "@id": "https://bioregistry.io/registry/pdb" + }, + { + "@id": "https://bioregistry.io/registry/ssbd.project" + }, + { + "@id": "https://bioregistry.io/registry/empiar" + }, + { + "@id": "https://bioregistry.io/registry/panorama" + }, + { + "@id": "https://bioregistry.io/registry/ssbd.dataset" + }, + { + "@id": "https://bioregistry.io/registry/idr" + }, + { + "@id": "https://bioregistry.io/registry/cellimage" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Resources mentioned in \"Sharing biological data: why, when, and how\"" + } + }, + { + "@id": "https://bioregistry.io/registry/obo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OBOFoundry/OBOFoundry.github.io" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Open Biological and Biomedical Ontologies" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OBO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.847069" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology and terminology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.obofoundry.org/" + }, + "https://bioregistry.io/schema/#0000005": "uberon", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7356-1779" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/uberon" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "obo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.DISEASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.identifiers.org/registry/qtldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/miro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012603", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHMI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lipidmaps", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/VTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1929", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/kestrelo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KESTREL Ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://disprot.org/" + "@id": "https://gitlab.pnnl.gov/kestrel/kestrel_ontology" }, - "https://bioregistry.io/schema/#0000005": "DP00003", - "https://bioregistry.io/schema/#0000006": "https://disprot.org/$1", - "https://bioregistry.io/schema/#0000008": "^DP\\d{5}$", + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/kestrelo_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4525-7793" + "@id": "https://orcid.org/0000-0002-8741-7823" }, - "https://bioregistry.io/schema/#0000024": "https://disprot.org/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/kestrelo_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://disprot.org/DP00003" + "@id": "http://purl.obolibrary.org/obo/kestrelo_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "disprot" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4dvtcz", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "kestrelo" } }, { - "@id": "https://registry.identifiers.org/registry/slm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://orcid.org/0000-0002-1795-5570", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Amanda Hicks" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "aellenhicks@gmail.com" } }, { - "@id": "https://bioregistry.io/registry/pathguide", + "@id": "https://bioregistry.io/registry/ird.segment", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pathguide contains information about 325 biological related resources and molecular interaction related resources.", + "http://purl.org/dc/terms/description": "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pathguide" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/pathguide" + "@value": "IRD Segment Sequence" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "gene" + "@id": "https://registry.bio2kg.org/resource/ird.segment" }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/ird.segment" }, { - "@value": "pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment" }, { - "@value": "interaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/IRD.SEGMENT" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "gene" }, { - "@value": "small molecule" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pathguide.org" + "@id": "http://www.fludb.org/" }, - "https://bioregistry.io/schema/#0000005": "49", - "https://bioregistry.io/schema/#0000006": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1", + "https://bioregistry.io/schema/#0000005": "CY077097", + "https://bioregistry.io/schema/#0000006": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=", + "https://bioregistry.io/schema/#0000024": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=49" + "@id": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=CY077097" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pathguide" + "@value": "ird.segment" } }, { - "@id": "https://registry.identifiers.org/registry/homd.seq", + "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/oa", + "@id": "https://registry.bio2kg.org/resource/sgd.pathways", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.obofoundry.org/ontology/foodon", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0002-9903-4248", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Michael Baudis" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "mbaudis@me.com" + "@id": "https://registry.identifiers.org/registry/paxdb.organism", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/umbbd.rule", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/umbbd" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EAWAG Biocatalysis/Biodegradation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.rule" - }, - { - "@id": "https://registry.identifiers.org/registry/umbbd.rule" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.RULE" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://umbbd.ethz.ch/servlets/pageservlet?ptype=allrules" - }, - "https://bioregistry.io/schema/#0000005": "bt0001", - "https://bioregistry.io/schema/#0000006": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1", - "https://bioregistry.io/schema/#0000008": "^bt\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "UM-BBD_ruleID" - }, - "https://bioregistry.io/schema/#0000024": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=bt0001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "umbbd.rule" + "@id": "https://www.uniprot.org/database/DB-0071", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://edamontology.org/data_1147", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://orcid.org/0000-0001-6787-2901", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Suzi Aleksander" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "suzia@stanford.edu" } }, { - "@id": "https://bioregistry.io/registry/genpept", + "@id": "https://bioregistry.io/registry/inaturalist.place", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.", + "http://purl.org/dc/terms/description": "Identifier for a place in iNaturalist", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GenPept" + "@value": "iNaturalist Place" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P7471" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/genpept" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/protein" + "@id": "https://www.inaturalist.org/places" }, - "https://bioregistry.io/schema/#0000005": "CAA71118.1", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept", - "https://bioregistry.io/schema/#0000008": "^\\w{3}\\d{5}(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000005": "7207", + "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/places/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/genpept:", + "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/places/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1?report=genpept" + "@id": "https://www.inaturalist.org/places/7207" }, "https://bioregistry.io/schema/#0000029": { - "@value": "genpept" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO_REF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_reactionID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@value": "inaturalist.place" } }, { - "@id": "https://bioregistry.io/registry/co_348", + "@id": "https://bioregistry.io/registry/afo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France).", + "http://purl.org/dc/terms/description": "Allotrope Merged Ontology Suite", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brassica ontology" + "@value": "Allotrope Merged Ontology Suite" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.af7a2d" + "@id": "http://www.ontobee.org/ontology/AFO" }, { - "@id": "https://cropontology.org/ontology/CO_348" + "@id": "http://aber-owl.net/ontology/AFO" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_348" + "@id": "https://bioportal.bioontology.org/ontologies/AFO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.595710" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -131629,4949 +121305,8636 @@ "@value": "ontology" }, { - "@value": "botany" + "@value": "environmental science" }, { - "@value": "life science" + "@value": "veterinary medicine" }, { "@value": "agriculture" + }, + { + "@value": "biology" + }, + { + "@value": "forest management" + }, + { + "@value": "agricultural engineering" + }, + { + "@value": "food chemistry" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_348/Brassica" + "@id": "https://www.allotrope.org/" }, - "https://bioregistry.io/schema/#0000005": "1100107", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_348:$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_348/Brassica/owl" + "@id": "http://purl.allotrope.org/voc/afo/merged/REC/2023/09/merged-without-qudt-and-inferred" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N7ba3234bbb0040258a3439900b0e2440" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_348:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_348:1100107" + "@id": "_:N330735ffe9774476b795effe4f9d071f" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_348" + "@value": "afo" } }, { - "@id": "_:N7ba3234bbb0040258a3439900b0e2440", + "@id": "_:N330735ffe9774476b795effe4f9d071f", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "helpdesk cropontology" + "@value": "Allotrope Foundation" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "more.info@allotrope.org" } }, { - "@id": "https://bioregistry.io/registry/co_325", + "@id": "https://bioregistry.io/registry/napdi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019", + "http://purl.org/dc/terms/description": "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Banana ontology" + "@value": "Natural Product-Drug Interaction Research Data Repository" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://cropontology.org/ontology/CO_325" + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPDI" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_325" + "@id": "https://registry.identifiers.org/registry/napdi" }, { - "@id": "https://fairsharing.org/FAIRsharing.gdszhh" + "@id": "https://fairsharing.org/FAIRsharing.y9x8wk" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" - }, - { - "@value": "ontology" + "@value": "pharmacology" }, { - "@value": "life science" + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_325/Banana" - }, - "https://bioregistry.io/schema/#0000005": "0000519", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_325:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_325/Banana/owl" + "@id": "https://repo.napdi.org/" }, + "https://bioregistry.io/schema/#0000005": "28", + "https://bioregistry.io/schema/#0000006": "https://repo.napdi.org/study/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6020-5919" + "@id": "https://orcid.org/0000-0002-2993-2085" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_325:", + "https://bioregistry.io/schema/#0000024": "https://repo.napdi.org/study/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_325:0000519" + "@id": "https://repo.napdi.org/study/28" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_325" - } - }, - { - "@id": "http://aber-owl.net/ontology/CLYH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "napdi" } }, { - "@id": "https://fairsharing.org/FAIRsharing.nzaz6z", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://registry.bio2kg.org/resource/icd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } + "@id": "https://orcid.org/0000-0003-1834-3856", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mathias Brochhausen" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "mbrochhausen@uams.edu" + }, + { + "@value": "mbrochhausen@gmail.com" + } + ] }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FAIRSHARING", + "@id": "https://registry.identifiers.org/registry/sgd.pathways", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P696", + "@id": "https://registry.identifiers.org/registry/arxiv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.93ee19", + "@id": "https://fairsharing.org/FAIRsharing.ja9cdq", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/sider.effect", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SIDER Side Effect" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIDER.EFFECT" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sider.effect" - }, - { - "@id": "https://registry.identifiers.org/registry/sider.effect" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://sideeffects.embl.de/" - }, - "https://bioregistry.io/schema/#0000005": "C0017565", - "https://bioregistry.io/schema/#0000006": "http://sideeffects.embl.de/se/$1", - "https://bioregistry.io/schema/#0000008": "^C\\d+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/umls" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://sideeffects.embl.de/se/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://sideeffects.embl.de/se/C0017565" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sider.effect" - } - }, - { - "@id": "https://bioregistry.io/registry/hgmd", + "@id": "https://bioregistry.io/registry/pharmacodb.tissue", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.", + "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Gene Mutation Database" + "@value": "PharmacoDB Tissues" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://edamontology.org/data_3265" - }, - { - "@id": "https://registry.identifiers.org/registry/hgmd" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.hgmd.cf.ac.uk/ac/index.php" + "@id": "https://pharmacodb.ca/tissues" }, - "https://bioregistry.io/schema/#0000005": "CALM1", - "https://bioregistry.io/schema/#0000006": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z_0-9]+$", + "https://bioregistry.io/schema/#0000005": "13", + "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/tissues/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=", + "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/tissues/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=CALM1" + "@id": "https://pharmacodb.ca/tissues/13" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hgmd" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "pharmacodb.tissue" } }, { - "@id": "https://www.re3data.org/repository/r3d100012362", + "@id": "https://www.re3data.org/repository/r3d100010605", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://www.obofoundry.org/ontology/pso", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/erm", + "@id": "https://bioregistry.io/metaregistry/biocontext/PD_ST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cas", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.VOCABULARY", + "@id": "https://bartoc.org/en/node/17791", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite", + "@id": "https://fairsharing.org/FAIRsharing.v9fya8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.PROTEIN", + "@id": "https://bioregistry.io/metaregistry/biocontext/ISSN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.d3pqw7", + "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0002-0784-4113", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tatsuya Kushida" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kushida@biosciencedbc.jp" + "@id": "https://bioportal.bioontology.org/ontologies/FB-CV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/subtilist", + "@id": "https://bioregistry.io/registry/yetfasco", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.", + "http://purl.org/dc/terms/description": "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bacillus subtilis genome sequencing project" + "@value": "YeTFasCo" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/subtilist" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SubtiList" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/subtilist" - }, - { - "@id": "https://registry.identifiers.org/registry/subtilist" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.40j2vd" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/YETFASCO" }, { - "@value": "dna" + "@id": "https://registry.identifiers.org/registry/yetfasco" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yetfasco" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genolist.pasteur.fr/SubtiList/" + "@id": "http://yetfasco.ccbr.utoronto.ca/" }, - "https://bioregistry.io/schema/#0000005": "BG11523", - "https://bioregistry.io/schema/#0000006": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1", - "https://bioregistry.io/schema/#0000008": "^BG\\d+$", + "https://bioregistry.io/schema/#0000005": "YOR172W_571.0", + "https://bioregistry.io/schema/#0000006": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+\\_\\d+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+", + "https://bioregistry.io/schema/#0000024": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+BG11523" + "@id": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=YOR172W_571.0" }, "https://bioregistry.io/schema/#0000029": { - "@value": "subtilist" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b2979t", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/owl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "yetfasco" } }, { - "@id": "https://bioregistry.io/registry/kegg.glycan", + "@id": "https://bioregistry.io/registry/norine", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - { - "@id": "https://bioregistry.io/registry/kegg" - } - ], + "http://purl.org/dc/terms/description": "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "KEGG Glycan" + "@value": "Nonribosomal Peptides Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan" + "@id": "https://registry.bio2kg.org/resource/norine" }, { - "@id": "https://registry.bio2kg.org/resource/kegg.glycan" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine" }, { - "@id": "http://edamontology.org/data_2613" + "@id": "https://fairsharing.org/FAIRsharing.gf8yhy" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN" + "@id": "https://registry.identifiers.org/registry/norine" }, { - "@id": "https://registry.identifiers.org/registry/kegg.glycan" + "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.genome.jp/kegg/glycan/" - }, - "https://bioregistry.io/schema/#0000005": "G00123", - "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", - "https://bioregistry.io/schema/#0000008": "^G\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.kegg.jp/entry/G00123" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kegg.glycan" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OHMI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/biofactoid", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/PathwayCommons/factoid" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biofactoid" - }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "database" - }, - { - "@value": "relationships" + "@value": "life science" }, { - "@value": "biocuration" + "@value": "protein" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biofactoid.org/" - }, - "https://bioregistry.io/schema/#0000005": "fdb8a927-45c3-48b7-9743-cbb5e16837fa", - "https://bioregistry.io/schema/#0000006": "https://biofactoid.org/document/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8912-5699" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "https://biofactoid.org/document/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biofactoid.org/document/fdb8a927-45c3-48b7-9743-cbb5e16837fa" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biofactoid" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g4n8sw", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/fairsharing", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://fairsharing.org/FAIRsharing.h3y42f" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.45a10e" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g0a7s0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.v06c4q" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.gq1xtx" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f0bxfg" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kj4pvk" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g0c5qn" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fex4c8" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.s3r6sk" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.g4n8sw" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fc3431" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vs7865" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j7esqq" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8wm364" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9rhr9j" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.619eqr" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fe4816" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zZHCUQ" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.brhpb0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bfcfd0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.etp533" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wvp1t7" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wkdjpb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wf28wm" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.n8pxvx" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f63h4k" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1fbc5y" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.h2wrt2" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ea287c" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.530e61" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9d5f5r" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.fgd5gq" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.65dmtr" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.s9ztmd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hsbpq3" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2qx8n8" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.96f3gm" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.68b03f" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.anpa6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3da56b" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tc6df8" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zx2ztd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dk451a" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f2c119" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wb0txg" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7e9cff" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j0t0pe" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.jykmkw" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j9y503" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.agvc7y" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.669cnk" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.847069" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ncgh1j" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c6vhm3" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hakg7c" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4fa657" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5a4y1y" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kj336a" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.IziuCK" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.hkk309" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.veg2d6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.m40bhw" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8qcbs0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.j7j53" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5hc8vt" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3t5qc3" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ngv2xx" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3me82d" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.tp9z4q" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y5jcwa" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mf91p5" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.xhpc3h" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.27w8k0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bpxgb6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.gf8yhy" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7zxrs6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mp0rwf" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pmg2vd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mct09a" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.efv7gw" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wqsxtg" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pdwqcr" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.np2wfz" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dvyrsz" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.0pUMYW" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c06f1e" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c4e46c" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4ef690" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.88v2k0" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dyj433" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dpkb5f" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.l8Sf5x" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.q47I0t" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.10zsxb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dp0jvd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b2979t" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.62evqh" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.akmeb9" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f69084" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2s4n8r" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ge1c3p" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2basyz" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3J6NYn" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3etvdn" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.aqhv1y" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d88s6e" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.a0k4cd" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.cc3f2x" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7vjq5t" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vppyga" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kkq6pw" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9j4wh2" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.61c2x6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2sqcxs" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.nygmp7" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ddk9t9" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5q1p14" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1c1738" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.USxx0K" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mphj4z" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pktgc6" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bv0zjz" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.309v57" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.f1777e" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.rycy2x" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.dq34p2" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kay31r" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.bcjrnq" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9gqfpm" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.b34b43" - }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioinfo.lifl.fr/norine/" + }, + "https://bioregistry.io/schema/#0000005": "NOR00681", + "https://bioregistry.io/schema/#0000006": "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1", + "https://bioregistry.io/schema/#0000008": "^NOR\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bioinfo.lifl.fr/norine/result.jsp?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bioinfo.lifl.fr/norine/result.jsp?ID=NOR00681" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "norine" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RNAcentral", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mint", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/cro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/data2health/contributor-role-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Contributor Role Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.5tfcy8" + "@id": "http://aber-owl.net/ontology/CRO" }, { - "@id": "https://fairsharing.org/FAIRsharing.ex3fqk" + "@id": "https://bioregistry.io/metaregistry/biocontext/CRO" }, { - "@id": "https://fairsharing.org/FAIRsharing.fj07xj" + "@id": "http://www.ontobee.org/ontology/CRO" }, { - "@id": "https://fairsharing.org/FAIRsharing.p58bm4" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro" }, { - "@id": "https://fairsharing.org/FAIRsharing.zv11j3" + "@id": "https://www.obofoundry.org/ontology/cro" }, { - "@id": "https://fairsharing.org/FAIRsharing.vy0p71" - }, + "@id": "https://bioportal.bioontology.org/ontologies/CRO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.v8se8r" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.7c683b" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/data2health/contributor-role-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000038", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cro.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5059-4132" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CRO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CRO_0000038" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cro" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cabri", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/maizegdb.locus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MaizeGDB is the maize research community's central repository for genetics and genomics information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MaizeGDB Locus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.10gr18" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB" }, { - "@id": "https://fairsharing.org/FAIRsharing.2bdvmk" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.e28v7g" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.ATwSZG" + "@id": "https://fairsharing.org/FAIRsharing.aq280w" }, { - "@id": "https://fairsharing.org/FAIRsharing.w9jvbt" + "@id": "https://registry.identifiers.org/registry/maizegdb.locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.jrv6wj" + "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS" }, { - "@id": "https://fairsharing.org/FAIRsharing.b549b8" + "@id": "https://registry.bio2kg.org/resource/maizegdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.39fd58" + "@id": "https://www.re3data.org/repository/r3d100010795" }, { - "@id": "https://fairsharing.org/FAIRsharing.kqt2h2" - }, + "@id": "https://www.uniprot.org/database/DB-0058" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.4Vs9VM" + "@value": "genome" }, { - "@id": "https://fairsharing.org/FAIRsharing.ss78t4" + "@value": "genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.d064y6" + "@value": "dna" }, { - "@id": "https://fairsharing.org/FAIRsharing.ezwdhz" + "@value": "genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.c23cqq" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.maizegdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "25011", + "https://bioregistry.io/schema/#0000006": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "MaizeGDB" + }, + "https://bioregistry.io/schema/#0000024": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25011" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "maizegdb.locus" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2gpf81", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/medlineplus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/BTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ORDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oryzabase.strain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/loggerhead", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.163", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cmo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/img.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/huge", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-9990-8331", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alexander Diehl" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "addiehl@buffalo.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/arrayexpress.platform", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mfo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Medaka fish anatomy and development" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.aae3v6" + "@id": "https://registry.bio2kg.org/resource/mfo" }, { - "@id": "https://fairsharing.org/FAIRsharing.j0ezpm" + "@id": "https://bioportal.bioontology.org/ontologies/MFO" }, { - "@id": "https://fairsharing.org/FAIRsharing.fcwyhz" + "@id": "https://www.obofoundry.org/ontology/mfo" }, { - "@id": "https://fairsharing.org/FAIRsharing.rfec93" + "@id": "http://aber-owl.net/ontology/MFO" }, { - "@id": "https://fairsharing.org/FAIRsharing.mye76w" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/MFO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.1evfpc" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.c7w81a" + "@value": "fish" }, { - "@id": "https://fairsharing.org/FAIRsharing.xgcyyn" + "@value": "anatomy" }, { - "@id": "https://fairsharing.org/FAIRsharing.945c78" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.6hna78" - }, + "@value": "development" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ani.embl.de:8080/mepd/" + }, + "https://bioregistry.io/schema/#0000005": "MFO_0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mfo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1548-3290" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFO_", + "https://bioregistry.io/schema/#0000029": { + "@value": "mfo" + } + }, + { + "@id": "https://registry.identifiers.org/registry/obv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/cao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology developed as part of the Chemical Analysis Metadata Project (ChAMP) as a resource to semantically annotate standards developed using the ChAMP platform. (source: CAO ontology)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chemical Analysis Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.amcv1e" + "@id": "http://aber-owl.net/ontology/CAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.6s749p" + "@id": "https://bioportal.bioontology.org/ontologies/CAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.ap169a" + "@id": "https://fairsharing.org/FAIRsharing.wp0134" }, { - "@id": "https://fairsharing.org/FAIRsharing.d05nwx" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.egv2cz" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.qnkw45" + "@value": "transport and kinetic data" }, { - "@id": "https://fairsharing.org/FAIRsharing.rb2drw" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.4e3qh9" + "@value": "phylogenetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.wpt5mp" + "@value": "genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.wcpd6f" - }, + "@value": "characterisation data heat" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://champ.stuchalk.domains.unf.edu" + }, + "https://bioregistry.io/schema/#0000005": "000064", + "https://bioregistry.io/schema/#0000006": "http://champ-project.org/images/ontology/cao.owl#CAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://champ.stuchalk.domains.unf.edu/images/ontology/cao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2668-4821" + }, + "https://bioregistry.io/schema/#0000024": "http://champ-project.org/images/ontology/cao.owl#CAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://champ-project.org/images/ontology/cao.owl#CAO_000064" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cao" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DUO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-2404-1582", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Clement Jonquet" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "clement.jonquet@inrae.fr" + } + }, + { + "@id": "https://bioregistry.io/registry/hinv.locus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "H-InvDb Locus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ny9vnm" + "@id": "https://registry.identifiers.org/registry/hinv.locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.3nx7t" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus" }, { - "@id": "https://fairsharing.org/FAIRsharing.djsbw2" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.LOCUS" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" + }, + "https://bioregistry.io/schema/#0000005": "HIX0004394", + "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1", + "https://bioregistry.io/schema/#0000008": "^HIX\\d{7}(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=HIX0004394" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hinv.locus" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.x81wz8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/UPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/odc.tbi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/registry/fbdv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of Drosophila melanogaster developmental stages.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/FlyBase/drosophila-developmental-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Drosophila development" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.yecp83" + "@id": "https://bioportal.bioontology.org/ontologies/FB-DV" }, { - "@id": "https://fairsharing.org/FAIRsharing.tw4q8x" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv" }, { - "@id": "https://fairsharing.org/FAIRsharing.t1a232" + "@id": "http://www.ontobee.org/ontology/FBdv" }, { - "@id": "https://fairsharing.org/FAIRsharing.3kcgmr" + "@id": "https://registry.bio2kg.org/resource/fbdv" }, { - "@id": "https://fairsharing.org/FAIRsharing.dstf7h" + "@id": "http://aber-owl.net/ontology/FBDV" }, { - "@id": "https://fairsharing.org/FAIRsharing.g7b4rj" + "@id": "https://fairsharing.org/FAIRsharing.p52pzj" }, { - "@id": "https://fairsharing.org/FAIRsharing.x56jsy" + "@id": "https://www.obofoundry.org/ontology/fbdv" }, { - "@id": "https://fairsharing.org/FAIRsharing.WxI96O" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.c7f4d7" + "@value": "development" }, { - "@id": "https://fairsharing.org/FAIRsharing.rfLD2u" + "@value": "fly" }, { - "@id": "https://fairsharing.org/FAIRsharing.jjb2p2" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.ad3137" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.vr52p3" + "@value": "developmental biology" }, { - "@id": "https://fairsharing.org/FAIRsharing.aI1J5W" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://purl.obolibrary.org/obo/fbdv" + }, + "https://bioregistry.io/schema/#0000005": "00000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBdv_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fbdv.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1373-1705" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "FBdv" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBdv_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FBdv_00000000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fbdv" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ccds", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/noncodev3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EDDA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/xco", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Experimental condition ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.dq78pn" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco" }, { - "@id": "https://fairsharing.org/FAIRsharing.fs1z27" + "@id": "https://registry.bio2kg.org/resource/xco" }, { - "@id": "https://fairsharing.org/FAIRsharing.8nq9t6" + "@id": "http://aber-owl.net/ontology/XCO" }, { - "@id": "https://fairsharing.org/FAIRsharing.jwra3e" + "@id": "https://bioregistry.io/metaregistry/biocontext/XCO" }, { - "@id": "https://fairsharing.org/FAIRsharing.yqn857" + "@id": "https://fairsharing.org/FAIRsharing.x39h5y" }, { - "@id": "https://fairsharing.org/FAIRsharing.h4j3qm" + "@id": "https://bioportal.bioontology.org/ontologies/XCO" }, { - "@id": "https://fairsharing.org/FAIRsharing.ohbpNw" + "@id": "http://www.ontobee.org/ontology/XCO" }, { - "@id": "https://fairsharing.org/FAIRsharing.mgxgza" - }, + "@id": "https://www.obofoundry.org/ontology/xco" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.1rj558" + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.w4tncg" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.af7a2d" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.2ma4gq" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.bf8dsb" - }, + "@value": "measurement" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000" + }, + "https://bioregistry.io/schema/#0000005": "0000780", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XCO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/xco.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://fairsharing.org/FAIRsharing.XykycZ" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://fairsharing.org/FAIRsharing.kpbna7" - }, + "@id": "https://bioregistry.io/registry/agro" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6443-9376" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XCO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/XCO_0000780" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "xco" + } + }, + { + "@id": "https://bioregistry.io/registry/emea", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Product number for the European Medicines Agency", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "European Medicines Evaluation Agency" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ema.europa.eu/en/medicines" + }, + "https://bioregistry.io/schema/#0000005": "EMEA/H/C/000181", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "emea" + } + }, + { + "@id": "https://orcid.org/0000-0001-7628-5565", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michelle Giglio" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mgiglio@som.umaryland.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sabiork.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/sabiork.kineticrecord", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SABIO Reaction Kinetics" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.z4agsr" + "@id": "https://registry.identifiers.org/registry/sabiork.kineticrecord" }, { - "@id": "https://fairsharing.org/FAIRsharing.w2eeqr" + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD" }, { - "@id": "https://fairsharing.org/FAIRsharing.63520c" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.kineticrecord" }, { - "@id": "https://fairsharing.org/FAIRsharing.9e9683" + "@id": "https://bioregistry.io/metaregistry/go/resolve/SABIO-RK" }, { - "@id": "https://fairsharing.org/FAIRsharing.bg7bb6" - }, + "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.dqnfkg" + "@value": "kinetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.wy4egf" + "@value": "classification" }, { - "@id": "https://fairsharing.org/FAIRsharing.97805c" - }, + "@value": "enzyme" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sabiork.h-its.org/" + }, + "https://bioregistry.io/schema/#0000005": "5046", + "https://bioregistry.io/schema/#0000006": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=5046" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sabiork.kineticrecord" + } + }, + { + "@id": "https://bioregistry.io/registry/mobidb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MobiDB is a database of protein disorder and mobility annotations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MobiDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.x81wz8" + "@id": "https://fairsharing.org/FAIRsharing.jwra3e" }, { - "@id": "https://fairsharing.org/FAIRsharing.cz9cnp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mobidb" }, { - "@id": "https://fairsharing.org/FAIRsharing.dt9z89" + "@id": "https://www.uniprot.org/database/DB-0183" }, { - "@id": "https://fairsharing.org/FAIRsharing.b220d4" + "@id": "https://bioregistry.io/metaregistry/biocontext/MOBIDB" }, { - "@id": "https://fairsharing.org/FAIRsharing.edxb58" - }, + "@id": "https://registry.identifiers.org/registry/mobidb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.4ndncv" + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.a5sv8m" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://mobidb.bio.unipd.it" + }, + "https://bioregistry.io/schema/#0000005": "P10636", + "https://bioregistry.io/schema/#0000006": "https://mobidb.org/$1", + "https://bioregistry.io/schema/#0000008": "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4525-7793" + }, + "https://bioregistry.io/schema/#0000024": "https://mobidb.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mobidb.org/P10636" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mobidb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KNAPSACK", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ilx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_330", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/peroxibase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MESH", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gitlab", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOGRID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/RO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbprobe", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/seed.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sgn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/asrp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Arabidopsis Small RNA Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/asrp" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.ay74mj" + "@value": "rna" }, { - "@id": "https://fairsharing.org/FAIRsharing.rbjs3e" + "@value": "regulation" }, { - "@id": "https://fairsharing.org/FAIRsharing.7sfedh" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://asrp.danforthcenter.org/" + }, + "https://bioregistry.io/schema/#0000005": "ASRP1423", + "https://bioregistry.io/schema/#0000006": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=ASRP1423" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "asrp" + } + }, + { + "@id": "https://bioregistry.io/registry/zfin", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Zebrafish Information Network Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.qr6pqk" + "@id": "https://www.re3data.org/repository/r3d100010421" }, { - "@id": "https://fairsharing.org/FAIRsharing.rs2815" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin" }, { - "@id": "https://fairsharing.org/FAIRsharing.c54ywe" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN" }, { - "@id": "https://fairsharing.org/FAIRsharing.ez2nhb" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC" }, { - "@id": "https://fairsharing.org/FAIRsharing.w7bw2y" + "@id": "https://registry.identifiers.org/registry/zfin" }, { - "@id": "https://fairsharing.org/FAIRsharing.qt3w7z" + "@id": "http://www.wikidata.org/entity/P3870" }, { - "@id": "https://fairsharing.org/FAIRsharing.sye5js" + "@id": "https://www.uniprot.org/database/DB-0113" }, { - "@id": "https://fairsharing.org/FAIRsharing.pxr7x2" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN" }, { - "@id": "https://fairsharing.org/FAIRsharing.6h8d2r" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN" }, { - "@id": "https://fairsharing.org/FAIRsharing.hzdzq8" + "@id": "https://fairsharing.org/FAIRsharing.ybxnhg" }, { - "@id": "https://fairsharing.org/FAIRsharing.shm2f2" - }, + "@id": "https://registry.bio2kg.org/resource/zfin" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.z656ab" + "@value": "genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.p52pzj" + "@value": "antibody" }, { - "@id": "https://fairsharing.org/FAIRsharing.a4ww64" + "@value": "adult" }, { - "@id": "https://fairsharing.org/FAIRsharing.p3bzqb" + "@value": "embryo" }, { - "@id": "https://fairsharing.org/FAIRsharing.ztvs34" + "@value": "expressed sequence tag" }, { - "@id": "https://fairsharing.org/FAIRsharing.9sb9qh" + "@value": "zebrafish" }, { - "@id": "https://fairsharing.org/FAIRsharing.rkpmhn" + "@value": "research" }, { - "@id": "https://fairsharing.org/FAIRsharing.we2r5a" + "@value": "cdna" }, { - "@id": "https://fairsharing.org/FAIRsharing.1a27h8" + "@value": "animal physiology" }, { - "@id": "https://fairsharing.org/FAIRsharing.Z8OKi5" + "@value": "fish" }, { - "@id": "https://fairsharing.org/FAIRsharing.8t18te" + "@value": "genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.5Pze7l" + "@value": "pathology" }, { - "@id": "https://fairsharing.org/FAIRsharing.jedbbt" + "@value": "zebrafish line" }, { - "@id": "https://fairsharing.org/FAIRsharing.nj16g" + "@value": "developmental biology" }, { - "@id": "https://fairsharing.org/FAIRsharing.AYegqK" + "@value": "gene" }, { - "@id": "https://fairsharing.org/FAIRsharing.yk38tw" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://zfin.org" + }, + "https://bioregistry.io/schema/#0000005": "ZDB-GENE-041118-11", + "https://bioregistry.io/schema/#0000006": "http://zfin.org/$1", + "https://bioregistry.io/schema/#0000008": "^ZDB\\-\\w+\\-\\d+\\-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5831-7439" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ZFIN" + }, + "https://bioregistry.io/schema/#0000024": "http://zfin.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://zfin.org/ZDB-GENE-041118-11" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "zfin" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DBD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/bindingdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BindingDB is the first public database of protein-small molecule affinity data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BindingDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.js20q3" + "@id": "https://www.re3data.org/repository/r3d100012074" }, { - "@id": "https://fairsharing.org/FAIRsharing.4gm9gt" + "@id": "https://registry.bio2kg.org/resource/bindingdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.7zffgc" + "@id": "https://bioregistry.io/metaregistry/biocontext/BINDINGDB" }, { - "@id": "https://fairsharing.org/FAIRsharing.4g5qcw" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bindingdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.b4sa0w" + "@id": "https://www.uniprot.org/database/DB-0127" }, { - "@id": "https://fairsharing.org/FAIRsharing.nbfwwv" + "@id": "https://registry.identifiers.org/registry/bindingdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.84c1a7" - }, + "@id": "https://fairsharing.org/FAIRsharing.3b36hk" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.4c7f91" + "@value": "drug discovery" }, { - "@id": "https://fairsharing.org/FAIRsharing.zmx7nn" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.sjhvyy" + "@value": "protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.4877h0" + "@value": "computational chemistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.1tbrdz" + "@value": "interaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.d2d84f" + "@value": "chemistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.ctwd7b" - }, + "@value": "medicinal chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.bindingdb.org" + }, + "https://bioregistry.io/schema/#0000005": "e999", + "https://bioregistry.io/schema/#0000006": "http://www.bindingdb.org/compact/$1", + "https://bioregistry.io/schema/#0000008": "^\\w\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3375-1738" + }, + "https://bioregistry.io/schema/#0000024": "http://www.bindingdb.org/compact/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bindingdb.org/compact/e999" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bindingdb" + } + }, + { + "@id": "https://bioregistry.io/registry/ximbio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ximbio" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Ximbio" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ximbio.com" + }, + "https://bioregistry.io/schema/#0000005": "151022", + "https://bioregistry.io/schema/#0000006": "https://ximbio.com/reagent/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://ximbio.com/reagent/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ximbio.com/reagent/151022" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ximbio" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ttd.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/yrcpdr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "YRC PDR" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.zx1td8" + "@id": "https://www.re3data.org/repository/r3d100010975" }, { - "@id": "https://fairsharing.org/FAIRsharing.6wf1zw" + "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR" }, { - "@id": "https://fairsharing.org/FAIRsharing.KcCjL7" + "@id": "https://registry.bio2kg.org/resource/yrc" }, { - "@id": "https://fairsharing.org/FAIRsharing.9w8ea0" + "@id": "https://fairsharing.org/FAIRsharing.karvzj" }, { - "@id": "https://fairsharing.org/FAIRsharing.6k0kwd" + "@id": "https://registry.identifiers.org/registry/yrcpdr" }, { - "@id": "https://fairsharing.org/FAIRsharing.0a674c" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yrcpdr" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.2ck3st" + "@value": "protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.5f5mfm" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.nbe4fq" - }, + "@value": "computational biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.yeastrc.org/pdr/" + }, + "https://bioregistry.io/schema/#0000005": "2673500", + "https://bioregistry.io/schema/#0000006": "http://yeastrc.org/pdr/viewProtein.do?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1633-8607" + }, + "https://bioregistry.io/schema/#0000024": "http://yeastrc.org/pdr/viewProtein.do?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://yeastrc.org/pdr/viewProtein.do?id=2673500" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "yrcpdr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OGMS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/civic.vgid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/NCBITaxon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/signaling-gateway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/xpo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cutg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1294", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hdr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cubedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vbase2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nextprot", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/GSSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/fix", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of physico-chemical methods and properties.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.mqvqde" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://fairsharing.org/FAIRsharing.6b77ac" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Physico-chemical methods and properties" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.hmgte8" + "@id": "http://aber-owl.net/ontology/FIX" }, { - "@id": "https://fairsharing.org/FAIRsharing.2mayq0" + "@id": "https://bioregistry.io/metaregistry/biocontext/FIX" }, { - "@id": "https://fairsharing.org/FAIRsharing.qx2rvz" + "@id": "https://www.obofoundry.org/ontology/fix" }, { - "@id": "https://fairsharing.org/FAIRsharing.3axym7" + "@id": "http://www.ontobee.org/ontology/FIX" }, { - "@id": "https://fairsharing.org/FAIRsharing.bc8ayj" + "@id": "https://bioportal.bioontology.org/ontologies/FIX" }, { - "@id": "https://fairsharing.org/FAIRsharing.2mk2zb" + "@id": "https://fairsharing.org/FAIRsharing.wwy1ns" }, { - "@id": "https://fairsharing.org/FAIRsharing.z1czxj" + "@id": "https://registry.bio2kg.org/resource/fix" }, { - "@id": "https://fairsharing.org/FAIRsharing.c55d5e" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.fb99fa" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.6tgyxf" + "@value": "property" }, { - "@id": "https://fairsharing.org/FAIRsharing.zchb68" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.3e0sn4" + "@value": "chemistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.1414v8" - }, + "@value": "experiment" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/chebi/" + }, + "https://bioregistry.io/schema/#0000005": "0000390", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FIX_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fix.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N48b7279c0aaa4cfba617c45096343b1a" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FIX_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fix" + } + }, + { + "@id": "_:N48b7279c0aaa4cfba617c45096343b1a", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "chEBI" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "chebi-help@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LGIC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/registry/pmr.workspace", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Workspace (Git repository) for modeling projects managed by the Physiome Model Repository", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Physiome Model Repository workspace" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/pmr.workspace" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.auckland.ac.nz/en.html" + }, + "https://bioregistry.io/schema/#0000005": "modularmassactionprimer", + "https://bioregistry.io/schema/#0000006": "https://models.physiomeproject.org/workspace/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\-]+(/.*?)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://models.physiomeproject.org/workspace/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://models.physiomeproject.org/workspace/modularmassactionprimer" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pmr.workspace" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.nwgynk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/UPHENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TXPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/foaf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/umls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-1548-3290", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Thorsten Henrich" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "henrich@embl.de" + } + }, + { + "@id": "https://bioregistry.io/registry/vido", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/infectious-disease-ontology-extensions/ido-virus" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Virus Infectious Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.z0p37e" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido" }, { - "@id": "https://fairsharing.org/FAIRsharing.yytevr" + "@id": "https://bioportal.bioontology.org/ontologies/VIDO" }, { - "@id": "https://fairsharing.org/FAIRsharing.uBpQ1q" + "@id": "http://aber-owl.net/ontology/VIDO" }, { - "@id": "https://fairsharing.org/FAIRsharing.eeyne8" - }, + "@id": "http://www.ontobee.org/ontology/VIDO" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/infectious-disease-ontology-extensions/ido-virus" + }, + "https://bioregistry.io/schema/#0000005": "0001114", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VIDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1118-1738" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VIDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/VIDO_0001114" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "vido" + } + }, + { + "@id": "https://bioregistry.io/registry/bmrb.restraint", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NMR Restraints Grid" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.40j2vd" + "@value": "nmr" }, { - "@id": "https://fairsharing.org/FAIRsharing.7fnx38" + "@value": "spectrometry" }, { - "@id": "https://fairsharing.org/FAIRsharing.eqgjeq" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet" + }, + "https://bioregistry.io/schema/#0000005": "28789", + "https://bioregistry.io/schema/#0000006": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=28789" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bmrb.restraint" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/fbbi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0158", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "http://www.ontobee.org/ontology/KISAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.2basyz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/scopus.affiliation", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "identifier for an organisation in author affiliations per Scopus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Scopus affiliation ID" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P1155" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://info.sciencedirect.com/scopus/scopus-in-detail/tools/affiliationidentifier" + }, + "https://bioregistry.io/schema/#0000005": "60025709", + "https://bioregistry.io/schema/#0000006": "https://www.scopus.com/affil/profile.uri?afid=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.scopus.com/affil/profile.uri?afid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.scopus.com/affil/profile.uri?afid=60025709" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scopus.affiliation" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD9", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/matrixdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MatrixDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.a14123" + "@id": "https://registry.bio2kg.org/resource/matrixdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.dff3ef" + "@id": "https://www.re3data.org/repository/r3d100010672" }, { - "@id": "https://fairsharing.org/FAIRsharing.pv0ezt" - }, + "@id": "https://fairsharing.org/FAIRsharing.91yrz6" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.n66krd" + "@value": "small molecule" }, { - "@id": "https://fairsharing.org/FAIRsharing.2f3180" + "@value": "protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.9b7wvk" + "@value": "interaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.s19src" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://matrixdb.univ-lyon1.fr/" + }, + "https://bioregistry.io/schema/#0000005": "MULT_4_VAR1_bovine", + "https://bioregistry.io/schema/#0000006": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/complexportal" + }, + "https://bioregistry.io/schema/#0000024": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=MULT_4_VAR1_bovine" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "matrixdb" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/doid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KISAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OOSTT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.zhwa8x", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.STAGE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/corrdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.plant", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/NDDF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/ATC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/niaid.chemdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ID in NIAID ChemDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIAID ChemDB ID" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P2065" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://chemdb.niaid.nih.gov" + }, + "https://bioregistry.io/schema/#0000005": "112081", + "https://bioregistry.io/schema/#0000006": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=112081" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "niaid.chemdb" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/flu", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.tc6df8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011931", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/oslc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OASIS Open Services for Lifecycle Collaboration Core Vocabulary" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://open-services.net/ns/core" + }, + "https://bioregistry.io/schema/#0000005": "Property", + "https://bioregistry.io/schema/#0000006": "http://open-services.net/ns/core#$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N97fe579fac334c8ca90aeb591f335afa" + }, + "https://bioregistry.io/schema/#0000024": "http://open-services.net/ns/core#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://open-services.net/ns/core#Property" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oslc" + } + }, + { + "@id": "_:N97fe579fac334c8ca90aeb591f335afa", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jim Amsden" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jamsden@us.ibm.com" + } + }, + { + "@id": "https://bioregistry.io/registry/nasc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NASC code" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.rvz0m9" + "@id": "https://fairsharing.org/FAIRsharing.2sqcxs" }, { - "@id": "https://fairsharing.org/FAIRsharing.tawpg2" + "@id": "https://bioregistry.io/metaregistry/biocontext/NASC" }, { - "@id": "https://fairsharing.org/FAIRsharing.hFLKCn" + "@id": "https://registry.bio2kg.org/resource/nasc" }, { - "@id": "https://fairsharing.org/FAIRsharing.9dpd18" + "@id": "https://registry.identifiers.org/registry/nasc" }, { - "@id": "https://fairsharing.org/FAIRsharing.36pf8q" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc" }, { - "@id": "https://fairsharing.org/FAIRsharing.e7e609" - }, + "@id": "https://www.re3data.org/repository/r3d100010906" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.vwc6bd" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.8d6247" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://arabidopsis.info/" + }, + "https://bioregistry.io/schema/#0000005": "N1899", + "https://bioregistry.io/schema/#0000006": "http://arabidopsis.info/StockInfo?NASC_id=$1", + "https://bioregistry.io/schema/#0000008": "^(\\w+)?\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5282-3250" + }, + "https://bioregistry.io/schema/#0000024": "http://arabidopsis.info/StockInfo?NASC_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://arabidopsis.info/StockInfo?NASC_id=N1899" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nasc" + } + }, + { + "@id": "https://orcid.org/0000-0002-2061-091X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "George Gkoutos" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://fairsharing.org/FAIRsharing.wx5r6f" + "@value": "g.gkoutos@bham.ac.uk" }, { - "@id": "https://fairsharing.org/FAIRsharing.w5ntfd" - }, + "@value": "g.gkoutos@gmail.com" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/spp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Signaling Pathways Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.5pfx4r" + "@id": "https://fairsharing.org/FAIRsharing.WxI96O" }, { - "@id": "https://fairsharing.org/FAIRsharing.mm72as" + "@id": "https://registry.identifiers.org/registry/spp" }, { - "@id": "https://fairsharing.org/FAIRsharing.newa3z" - }, + "@id": "https://www.re3data.org/repository/r3d100013650" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.sm90nh" + "@value": "transcriptomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.qp211a" - }, + "@value": "omics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.signalingpathways.org/index.jsf" + }, + "https://bioregistry.io/schema/#0000005": "10.1621/vwN2g2HaX3", + "https://bioregistry.io/schema/#0000006": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1", + "https://bioregistry.io/schema/#0000008": "^10.\\w{4}/\\w{10}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6689-0104" + }, + "https://bioregistry.io/schema/#0000024": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=10.1621/vwN2g2HaX3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "spp" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ECAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/proglyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RESID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.js20q3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bdn9br", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://edamontology.org/data_1040", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecoliwiki", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/modeldb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ecoportal" + } + }, + { + "@id": "https://orcid.org/0000-0003-1321-3956", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Al Kikhney" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "a.kikhney@embl-hamburg.de" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bfcfd0", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qt3w7z", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/wikidata", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_341", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://registry.identifiers.org/registry/civic.eid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mfomd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/jannahastings/mental-functioning-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mental Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.y00hz4" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd" }, { - "@id": "https://fairsharing.org/FAIRsharing.8b6wfq" + "@id": "https://bioregistry.io/metaregistry/biocontext/MFOMD" }, { - "@id": "https://fairsharing.org/FAIRsharing.vgw1m6" + "@id": "https://bioportal.bioontology.org/ontologies/MFOMD" }, { - "@id": "https://fairsharing.org/FAIRsharing.5949vn" + "@id": "http://www.ontobee.org/ontology/MFOMD" }, { - "@id": "https://fairsharing.org/FAIRsharing.6ccbe6" + "@id": "https://www.obofoundry.org/ontology/mfomd" }, { - "@id": "https://fairsharing.org/FAIRsharing.c86z66" + "@id": "https://fairsharing.org/FAIRsharing.q053vb" }, { - "@id": "https://fairsharing.org/FAIRsharing.pda11d" - }, + "@id": "http://aber-owl.net/ontology/MFOMD" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.i1F3Hb" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.f928f1" + "@value": "psychiatry" }, { - "@id": "https://fairsharing.org/FAIRsharing.65xkbs" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/jannahastings/mental-functioning-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000046", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MFOMD_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mfomd.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3469-4923" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MFOMD_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/MFOMD_0000046" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mfomd" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/MAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DEPOD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.6b77ac", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/omo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/uniref", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/GEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://www.wikidata.org/entity/P267", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8t18te", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mycobank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/icd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/obi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-5889-4463", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mark Engelstad" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "engelsta@ohsu.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/sao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Subcellular Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.d31795" + "@id": "https://registry.bio2kg.org/resource/sao" }, { - "@id": "https://fairsharing.org/FAIRsharing.e4n3an" + "@id": "https://bioregistry.io/metaregistry/biocontext/SAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.pn1sr5" + "@id": "https://www.obofoundry.org/ontology/sao" }, { - "@id": "https://fairsharing.org/FAIRsharing.4qyf0f" + "@id": "https://bioportal.bioontology.org/ontologies/SAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.t9fvdn" - }, + "@id": "http://aber-owl.net/ontology/SAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.aVmpKl" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.7fc5y6" + "@value": "owl" }, { - "@id": "https://fairsharing.org/FAIRsharing.t19hpa" + "@value": "biochemistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.nzaz6z" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ccdb.ucsd.edu/CCDBWebSite/sao.html" + }, + "https://bioregistry.io/schema/#0000005": "5277619", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/sao$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/SAO/2/sao.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nd76b03d6e7bf479999c04bf3d1889fcd" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/sao", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/sao5277619" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sao" + } + }, + { + "@id": "_:Nd76b03d6e7bf479999c04bf3d1889fcd", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Stephen Larson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "slarson@ncmir.ucsd.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SABIORK.KINETICRECORD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/repeatsdb.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RepeatsDB Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/repeatsdb.protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://repeatsdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "P29894", + "https://bioregistry.io/schema/#0000006": "https://repeatsdb.org/protein/$1", + "https://bioregistry.io/schema/#0000008": "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://repeatsdb.org/protein/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://repeatsdb.org/protein/P29894" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "repeatsdb.protein" + } + }, + { + "@id": "http://www.ontobee.org/ontology/HSO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MAXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BSPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/to", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/dsmz", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:\n\n- `PC`: positive control\n- `NC`: negative control\n- `AS`: antiserum\n- `PV`: plant viruses\n- `RT`: recommended test\n- `ACC`: human or animal cell line\n- `DSM`: microorganism cell line", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Deutsche Sammlung von Mikroorganismen und Zellkulturen" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.mtjvme" + "@id": "https://www.re3data.org/repository/r3d100010219" }, { - "@id": "https://fairsharing.org/FAIRsharing.q053vb" - }, + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.dsmz.de" + }, + "https://bioregistry.io/schema/#0000005": "ACC-1", + "https://bioregistry.io/schema/#0000006": "https://www.dsmz.de/collection/catalogue/details/culture/$1", + "https://bioregistry.io/schema/#0000008": "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "DSMZCellDive" + }, + "https://bioregistry.io/schema/#0000024": "https://www.dsmz.de/collection/catalogue/details/culture/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.dsmz.de/collection/catalogue/details/culture/ACC-1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dsmz" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.8b6wfq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/cell_model_passport", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sanger Cell Model Passports" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Model_Passport" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cellmodelpassports.sanger.ac.uk/" + }, + "https://bioregistry.io/schema/#0000005": "SIDM01262", + "https://bioregistry.io/schema/#0000006": "https://cellmodelpassports.sanger.ac.uk/passports/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cellmodelpassports.sanger.ac.uk/passports/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cellmodelpassports.sanger.ac.uk/passports/SIDM01262" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cell_model_passport" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bcgo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An application ontology built for beta cell genomics studies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obi-bcgo/bcgo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Beta Cell Genomics Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.7k8zh0" + "@id": "https://bioregistry.io/metaregistry/biocontext/BCGO" }, { - "@id": "https://fairsharing.org/FAIRsharing.67sssf" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCGO" }, { - "@id": "https://fairsharing.org/FAIRsharing.63m4ss" + "@id": "http://www.ontobee.org/ontology/BCGO" }, { - "@id": "https://fairsharing.org/FAIRsharing.sp3szt" + "@id": "https://www.obofoundry.org/ontology/bcgo" }, { - "@id": "https://fairsharing.org/FAIRsharing.62qk8w" + "@id": "http://aber-owl.net/ontology/BCGO" }, { - "@id": "https://fairsharing.org/FAIRsharing.kd39j4" + "@id": "https://bioportal.bioontology.org/ontologies/BCGO" }, { - "@id": "https://fairsharing.org/FAIRsharing.a6r7zs" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.k008w7" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.cwx04e" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obi-bcgo/bcgo" + }, + "https://bioregistry.io/schema/#0000005": "0000015", + "https://bioregistry.io/schema/#0000006": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/obi-bcgo/bcgo/raw/master/ontology/bcgo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2999-0103" + }, + "https://bioregistry.io/schema/#0000024": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/0000015" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bcgo" + } + }, + { + "@id": "https://bioregistry.io/registry/molbase.sheffield", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MolBase" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://winter.group.shef.ac.uk/molbase/" + }, + "https://bioregistry.io/schema/#0000005": "1868", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "molbase.sheffield" + } + }, + { + "@id": "https://bioregistry.io/registry/fabio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sparontologies/fabio" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FaBiO, the FRBR-aligned Bibliographic Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ckd4rf" + "@id": "https://fairsharing.org/FAIRsharing.2f3180" }, { - "@id": "https://fairsharing.org/FAIRsharing.v9fya8" + "@id": "http://aber-owl.net/ontology/FaBiO" }, { - "@id": "https://fairsharing.org/FAIRsharing.6xq0ee" - }, + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/fabio" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.99da5f" + "@value": "subject agnostic" }, { - "@id": "https://fairsharing.org/FAIRsharing.w6cxgb" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/sparontologies/fabio" + }, + "https://bioregistry.io/schema/#0000005": "d4e2515", + "https://bioregistry.io/schema/#0000006": "https://sparontologies.github.io/fabio/current/fabio.html#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/FaBiO/1/fabio.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0530-4305" + }, + "https://bioregistry.io/schema/#0000024": "https://sparontologies.github.io/fabio/current/fabio.html#", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sparontologies.github.io/fabio/current/fabio.html#d4e2515" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fabio" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pubchem.bioassay", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LINCS_LDP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/NIHhESC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/collection/0000007", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "Prefixes useful in annotating documentation provenance." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://fairsharing.org/FAIRsharing.fhcmwq" + "@id": "https://bioregistry.io/registry/pubmed" }, { - "@id": "https://fairsharing.org/FAIRsharing.2m4ms9" + "@id": "https://bioregistry.io/registry/pmc" }, { - "@id": "https://fairsharing.org/FAIRsharing.aSszvY" + "@id": "https://bioregistry.io/registry/arxiv" }, { - "@id": "https://fairsharing.org/FAIRsharing.5h3maw" - }, + "@id": "https://bioregistry.io/registry/doi" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Publication Provenance Prefixes" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PUBCHEM.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pktgc6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/receptome.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Plasma Membrane Receptome Families" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/hpmr" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.receptome.org" + }, + "https://bioregistry.io/schema/#0000005": "5.1", + "https://bioregistry.io/schema/#0000006": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=5.1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "receptome.family" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/fao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/HOIP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-2353-596X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Maria Taboada" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "maria.taboada@usc.es" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/bykdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/taxrank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.djsbw2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ncim", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCI Metathesaurus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.pzvw40" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncim" }, { - "@id": "https://fairsharing.org/FAIRsharing.aq280w" + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIM" }, { - "@id": "https://fairsharing.org/FAIRsharing.pbbnwa" - }, + "@id": "https://registry.identifiers.org/registry/ncim" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ncim.nci.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "C0026339", + "https://bioregistry.io/schema/#0000006": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1", + "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/040gcmg81" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0026339" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ncim" + } + }, + { + "@id": "https://bioregistry.io/registry/voc4cat", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/nfdi4cat/voc4cat" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "A vocabulary for the catalysis disciplines" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://nfdi4cat.github.io/voc4cat/" + }, + "https://bioregistry.io/schema/#0000005": "0000123", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/nfdi4cat/voc4cat_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6242-2167" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/nfdi4cat/voc4cat_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/nfdi4cat/voc4cat_0000123" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "voc4cat" + } + }, + { + "@id": "https://bioregistry.io/registry/bigg.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BiGG Reaction" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.h5f091" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION" }, { - "@id": "https://fairsharing.org/FAIRsharing.7C0aVE" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.v0hbjs" - }, + "@id": "https://registry.identifiers.org/registry/bigg.reaction" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bigg.ucsd.edu/universal/reactions" + }, + "https://bioregistry.io/schema/#0000005": "13GS", + "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/universal/reactions/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/universal/reactions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bigg.ucsd.edu/models/universal/reactions/13GS" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bigg.reaction" + } + }, + { + "@id": "https://registry.identifiers.org/registry/re3data", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/bspo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vy0p71", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ngl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DCM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/ecolexicon", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EcoLexicon" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.ge8y23" + "@value": "ecology" }, { - "@id": "https://fairsharing.org/FAIRsharing.qrrvyk" - }, + "@value": "environmental science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ecolexicon.ugr.es/en/index.htm" + }, + "https://bioregistry.io/schema/#0000005": "canal", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecolexicon" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neuromorpho", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dashr.expression", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DASHR expression" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ntyq70" + "@id": "https://registry.identifiers.org/registry/dashr.expression" }, { - "@id": "https://fairsharing.org/FAIRsharing.ybxnhg" + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION" }, { - "@id": "https://fairsharing.org/FAIRsharing.35e1c3" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0" + }, + "https://bioregistry.io/schema/#0000005": "hsa-mir-200a", + "https://bioregistry.io/schema/#0000006": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable", + "https://bioregistry.io/schema/#0000008": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dashr.expression:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#hsa-mir-200a#exprPerTissueTable" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dashr.expression" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000140", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/cgnc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chicken Gene Nomenclature Consortium" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.3zqvaf" + "@id": "https://www.re3data.org/repository/r3d100012429" }, { - "@id": "https://fairsharing.org/FAIRsharing.azqskx" - }, + "@id": "https://registry.bio2kg.org/resource/cgnc" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "gene" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://birdgenenames.org/cgnc/" + }, + "https://bioregistry.io/schema/#0000005": "10087", + "https://bioregistry.io/schema/#0000006": "http://birdgenenames.org/cgnc/GeneReport?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://fairsharing.org/FAIRsharing.zzgvrv" + "@value": "BirdBase" }, { - "@id": "https://fairsharing.org/FAIRsharing.bdn9br" - }, + "@value": "CGNC" + } + ], + "https://bioregistry.io/schema/#0000024": "http://birdgenenames.org/cgnc/GeneReport?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://birdgenenames.org/cgnc/GeneReport?id=10087" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cgnc" + } + }, + { + "@id": "https://bioregistry.io/registry/ascl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Astrophysics Source Code Library" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.swbypy" + "@id": "https://www.re3data.org/repository/r3d100011865" }, { - "@id": "https://fairsharing.org/FAIRsharing.zwtww5" + "@id": "https://fairsharing.org/FAIRsharing.wb0txg" }, { - "@id": "https://fairsharing.org/FAIRsharing.cb7086" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl" }, { - "@id": "https://fairsharing.org/FAIRsharing.eyjkws" + "@id": "https://registry.identifiers.org/registry/ascl" }, { - "@id": "https://fairsharing.org/FAIRsharing.93g1th" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ASCL" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "astrophysics and astronomy" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ascl.net/" + }, + "https://bioregistry.io/schema/#0000005": "1801.012", + "https://bioregistry.io/schema/#0000006": "http://ascl.net/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9\\.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://ascl.net/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ascl.net/1801.012" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ascl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://aber-owl.net/ontology/VHOG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5h3maw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-7577-5028", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hector Escriva" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hescriva@obs-banyuls.fr" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.gq1xtx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/iedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Immune Epitope Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.651n9j" + "@id": "https://www.re3data.org/repository/r3d100012702" }, { - "@id": "https://fairsharing.org/FAIRsharing.s5zmbp" + "@id": "https://fairsharing.org/FAIRsharing.c886cd" }, { - "@id": "https://fairsharing.org/FAIRsharing.xn3pb3" + "@id": "https://registry.bio2kg.org/resource/tied" }, { - "@id": "https://fairsharing.org/FAIRsharing.bg5xqs" - }, + "@id": "https://registry.identifiers.org/registry/iedb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.162003" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.j1wj7d" + "@value": "small molecule" }, { - "@id": "https://fairsharing.org/FAIRsharing.3q3kvn" + "@value": "immunology" }, { - "@id": "https://fairsharing.org/FAIRsharing.6L6MjA" + "@value": "protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.y1zyaq" - }, + "@value": "bioinformatics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.lji.org/" + }, + "https://bioregistry.io/schema/#0000005": "1038233", + "https://bioregistry.io/schema/#0000006": "https://www.iedb.org/reference/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.iedb.org/reference/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.iedb.org/reference/1038233" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iedb" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nextdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.xhwrnr" + "@id": "https://bioregistry.io/registry/kegg" }, { - "@id": "https://fairsharing.org/FAIRsharing.mjnypw" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Reaction" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.q9j2e3" + "@id": "https://registry.bio2kg.org/resource/kegg.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.2gpf81" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.REACTION" }, { - "@id": "https://fairsharing.org/FAIRsharing.6yNXYK" + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_REACTION" }, { - "@id": "https://fairsharing.org/FAIRsharing.hpvbxb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.xz5m1a" + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "https://fairsharing.org/FAIRsharing.qje0v8" + "@id": "https://registry.identifiers.org/registry/kegg.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.4vr0ys" - }, + "@id": "http://edamontology.org/data_2608" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.6dba71" + "@value": "pathway" }, { - "@id": "https://fairsharing.org/FAIRsharing.d7f0a9" - }, + "@value": "enzyme" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.jp/kegg/reaction/" + }, + "https://bioregistry.io/schema/#0000005": "R00100", + "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^R\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "KEGG_REACTION" + }, + "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.kegg.jp/entry/R00100" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.reaction" + } + }, + { + "@id": "https://registry.identifiers.org/registry/lincs.cell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ensembl.bacteria", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.x39h5y" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.9aa0zp" - }, + "@id": "https://bioregistry.io/registry/ensembl" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ensembl Bacteria" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.k5k0yh" + "@id": "https://fairsharing.org/FAIRsharing.zsgmvd" }, { - "@id": "https://fairsharing.org/FAIRsharing.4jg0qw" + "@id": "https://www.uniprot.org/database/DB-0147" }, { - "@id": "https://fairsharing.org/FAIRsharing.91yrz6" + "@id": "https://www.re3data.org/repository/r3d100011195" }, { - "@id": "https://fairsharing.org/FAIRsharing.b1xD9f" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria" }, { - "@id": "https://fairsharing.org/FAIRsharing.g78mbm" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.BACTERIA" }, { - "@id": "https://fairsharing.org/FAIRsharing.c86b48" + "@id": "https://registry.bio2kg.org/resource/ensembl.bacteria" }, { - "@id": "https://fairsharing.org/FAIRsharing.6375zh" - }, + "@id": "https://registry.identifiers.org/registry/ensembl.bacteria" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.jcg19w" + "@value": "comparative genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.6bd5k6" + "@value": "genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.5p12xh" - }, + "@value": "genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bacteria.ensembl.org/" + }, + "https://bioregistry.io/schema/#0000005": "MU9_3181", + "https://bioregistry.io/schema/#0000006": "https://bacteria.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bacteria.ensembl.org/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bacteria.ensembl.org/id/MU9_3181" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensembl.bacteria" + } + }, + { + "@id": "https://orcid.org/0000-0003-1633-8607", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michael Riffle" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mriffle@u.washington.edu" + } + }, + { + "@id": "http://aber-owl.net/ontology/IDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/fbsp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/tair.locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/datanator.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.b9znd5" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.qcceez" - }, + "@id": "https://bioregistry.io/registry/datanator" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Datanator Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/datanator.gene" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://datanator.info/" + }, + "https://bioregistry.io/schema/#0000005": "K00973", + "https://bioregistry.io/schema/#0000006": "https://www.datanator.info/gene/$1", + "https://bioregistry.io/schema/#0000008": "^K[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.datanator.info/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.datanator.info/gene/K00973" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "datanator.gene" + } + }, + { + "@id": "https://bioregistry.io/registry/giardiadb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GiardiaDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.dj8nt8" + "@id": "https://fairsharing.org/FAIRsharing.e7skwg" }, { - "@id": "https://fairsharing.org/FAIRsharing.m3jtpg" + "@id": "https://registry.identifiers.org/registry/giardiadb" }, { - "@id": "https://fairsharing.org/FAIRsharing.wwy1ns" + "@id": "https://www.re3data.org/repository/r3d100012458" }, { - "@id": "https://fairsharing.org/FAIRsharing.5NhJFK" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/giardiadb" }, { - "@id": "https://fairsharing.org/FAIRsharing.7g1bzj" + "@id": "https://registry.bio2kg.org/resource/giardiadb" }, { - "@id": "https://fairsharing.org/FAIRsharing.r7Kwy7" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/GIARDIADB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.q3b39v" + "@value": "eukaryotic" }, { - "@id": "https://fairsharing.org/FAIRsharing.31apg2" + "@value": "genome" }, { - "@id": "https://fairsharing.org/FAIRsharing.pfg82t" - }, + "@value": "genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://giardiadb.org/giardiadb/" + }, + "https://bioregistry.io/schema/#0000005": "GL50803_102438", + "https://bioregistry.io/schema/#0000006": "https://giardiadb.org/giardiadb/app/record/gene/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://giardiadb.org/giardiadb/app/record/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://giardiadb.org/giardiadb/app/record/gene/GL50803_102438" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "giardiadb" + } + }, + { + "@id": "https://bioregistry.io/registry/vdrc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vienna Drosophila Resource Center" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.nx58jg" + "@value": "biomaterial supply resource" }, { - "@id": "https://fairsharing.org/FAIRsharing.beb855" + "@value": "drosophila" }, { - "@id": "https://fairsharing.org/FAIRsharing.4c0b6b" - }, + "@value": "fly lines" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://stockcenter.vdrc.at/control/main" + }, + "https://bioregistry.io/schema/#0000005": "100291", + "https://bioregistry.io/schema/#0000006": "https://shop.vbc.ac.at/vdrc_store/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/vdrc:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://shop.vbc.ac.at/vdrc_store/100291.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "vdrc" + } + }, + { + "@id": "https://bioregistry.io/registry/geonames", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GeoNames" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.3d4jx0" + "@id": "https://fairsharing.org/FAIRsharing.6dba71" }, { - "@id": "https://fairsharing.org/FAIRsharing.2jkxp5" - }, + "@id": "https://www.re3data.org/repository/r3d100010245" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.17zapb" + "@value": "geoinformatics" }, { - "@id": "https://fairsharing.org/FAIRsharing.vdbagq" - }, + "@value": "geography" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.geonames.org" + }, + "https://bioregistry.io/schema/#0000005": "3532759", + "https://bioregistry.io/schema/#0000006": "https://www.geonames.org/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://fairsharing.org/FAIRsharing.kbtt7f" + "@value": "Geomames" }, { - "@id": "https://fairsharing.org/FAIRsharing.tx95wa" - }, + "@value": "Geonamaes" + } + ], + "https://bioregistry.io/schema/#0000024": "https://www.geonames.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.geonames.org/3532759" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "geonames" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5ab0n7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/odor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mirnest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pdb.ligand", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OBIB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/dicom", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DICOM Controlled Terminology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DICOM Controlled Terminology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.p1sejz" + "@id": "http://oid-info.com/get/1.2.840.10008.2.16.4" }, { - "@id": "https://fairsharing.org/FAIRsharing.na5xp" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom" }, { - "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3" + "@id": "https://fairsharing.org/FAIRsharing.b7z8by" }, { - "@id": "https://fairsharing.org/FAIRsharing.czzmpg" - }, + "@id": "https://bioportal.bioontology.org/ontologies/DCM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.dzxae" + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.ny3z9j" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.recas1" + "@value": "anatomy" }, { - "@id": "https://fairsharing.org/FAIRsharing.27rndz" - }, + "@value": "medicine" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://dicom.nema.org/medical/dicom/current/output/chtml/part16/chapter_D.html" + }, + "https://bioregistry.io/schema/#0000005": "109082", + "https://bioregistry.io/schema/#0000006": "http://dicom.nema.org/resources/ontology/DCM/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "ftp://medical.nema.org/MEDICAL/Dicom/Resources/Ontology/DCM/dcm.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2406-1145" + }, + "https://bioregistry.io/schema/#0000024": "http://dicom.nema.org/resources/ontology/DCM/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://dicom.nema.org/resources/ontology/DCM/109082" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dicom" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/jws", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q09hck", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hakg7c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bgkyd7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/iuphar.receptor", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Guide to Pharmacology Target" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.mr293q" + "@id": "https://bioregistry.io/metaregistry/go/resolve/IUPHAR_RECEPTOR" }, { - "@id": "https://fairsharing.org/FAIRsharing.vxz9pn" + "@id": "https://registry.identifiers.org/registry/iuphar.receptor" }, { - "@id": "https://fairsharing.org/FAIRsharing.wkaakq" + "@id": "https://www.uniprot.org/database/DB-0182" }, { - "@id": "https://fairsharing.org/FAIRsharing.284e1z" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor" }, { - "@id": "https://fairsharing.org/FAIRsharing.6bc7h9" + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR" }, { - "@id": "https://fairsharing.org/FAIRsharing.ad9d85" - }, + "@id": "http://www.wikidata.org/entity/P5458" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.guidetopharmacology.org/targets.jsp" + }, + "https://bioregistry.io/schema/#0000005": "101", + "https://bioregistry.io/schema/#0000006": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://fairsharing.org/FAIRsharing.rj3kj5" + "@value": "IUPHAR_GPCR" }, { - "@id": "https://fairsharing.org/FAIRsharing.9vtwjs" - }, + "@value": "IUPHARobj" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=101" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iuphar.receptor" + } + }, + { + "@id": "http://edamontology.org/data_1155", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/langual", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Langual stands for \"langua alimentaria\" or \"language of food\". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Langua aLimentaria Thesaurus" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.langual.org" + }, + "https://bioregistry.io/schema/#0000005": "B2067", + "https://bioregistry.io/schema/#0000006": "https://www.langual.org/langual_thesaurus.asp?termid=$1", + "https://bioregistry.io/schema/#0000008": "^B\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.langual.org/langual_thesaurus.asp?termid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.langual.org/langual_thesaurus.asp?termid=B2067" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "langual" + } + }, + { + "@id": "https://bioregistry.io/registry/fbrf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FlyBase internal citation identifiers", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://fairsharing.org/FAIRsharing.5rb3fk" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://fairsharing.org/FAIRsharing.aa0eat" - }, + "@id": "https://bioregistry.io/registry/flybase" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FlyBase Reference Report" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://flybase.org" + }, + "https://bioregistry.io/schema/#0000005": "0187632", + "https://bioregistry.io/schema/#0000006": "https://flybase.org/reports/FBrf$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://flybase.org/reports/FBrf", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://flybase.org/reports/FBrf0187632" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fbrf" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dpv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/ricenetdb.mirna", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RiceNetDB miRNA" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.k893xa" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.mirna" }, { - "@id": "https://fairsharing.org/FAIRsharing.wvpgwn" + "@id": "https://registry.identifiers.org/registry/ricenetdb.mirna" }, { - "@id": "https://fairsharing.org/FAIRsharing.j0fa1d" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bis.zju.edu.cn/ricenetdb" + }, + "https://bioregistry.io/schema/#0000005": "osa-miR446", + "https://bioregistry.io/schema/#0000006": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1", + "https://bioregistry.io/schema/#0000008": "^osa-miR\\d{3,5}[a-z]{0,1}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=osa-miR446" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ricenetdb.mirna" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.LYsiMd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/glycomapsdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7zxrs6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.669cnk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.p58bm4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/minid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-2118-035X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Adrien Rougny" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "adrienrougny@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VIPR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bartoc.org/en/node/822", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/civic.aid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/flu", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Influenza Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.vxpUJ6" + "@id": "http://aber-owl.net/ontology/FLU" }, { - "@id": "https://fairsharing.org/FAIRsharing.tppk10" + "@id": "https://bioregistry.io/metaregistry/biocontext/FLU" }, { - "@id": "https://fairsharing.org/FAIRsharing.ehe3yp" + "@id": "https://www.obofoundry.org/ontology/flu" }, { - "@id": "https://fairsharing.org/FAIRsharing.5dnjs2" - }, + "@id": "https://bioportal.bioontology.org/ontologies/FLU" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.bxc508" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.h8r843" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://purl.obolibrary.org/obo/flu/" + }, + "https://bioregistry.io/schema/#0000005": "0000404", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FLU_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/flu.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9666-6285" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FLU_", + "https://bioregistry.io/schema/#0000029": { + "@value": "flu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hgnc.genegroup", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/swh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ecyano.model", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "E-cyanobacterium model" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.vq28qp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model" }, { - "@id": "https://fairsharing.org/FAIRsharing.c9psgb" + "@id": "https://registry.identifiers.org/registry/ecyano.model" }, { - "@id": "https://fairsharing.org/FAIRsharing.haxp7g" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ECYANO.MODEL" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://e-cyanobacterium.org/models/" + }, + "https://bioregistry.io/schema/#0000005": "26", + "https://bioregistry.io/schema/#0000006": "https://e-cyanobacterium.org/models/model/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://e-cyanobacterium.org/models/model/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://e-cyanobacterium.org/models/model/26" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecyano.model" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HIVReagentProgram", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/geo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0046", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.SEQ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wqsxtg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.drug", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/resid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CHEBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2062", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/jws", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rgd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/colao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/insect-morphology/colao" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Coleoptera Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.250a8c" + "@id": "https://bioportal.bioontology.org/ontologies/COLAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.ttprgy" + "@id": "http://aber-owl.net/ontology/COLAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.x989d5" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao" }, { - "@id": "https://fairsharing.org/FAIRsharing.da493y" + "@id": "http://www.ontobee.org/ontology/COLAO" }, { - "@id": "https://fairsharing.org/FAIRsharing.efp5v2" - }, + "@id": "https://www.obofoundry.org/ontology/colao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.2y1KMt" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.qv4b3c" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/insect-morphology/colao" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COLAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/colao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://fairsharing.org/FAIRsharing.p06nme" + "@id": "https://bioregistry.io/registry/pato" }, { - "@id": "https://fairsharing.org/FAIRsharing.w69t6r" + "@id": "https://bioregistry.io/registry/bfo" }, { - "@id": "https://fairsharing.org/FAIRsharing.p77ph9" + "@id": "https://bioregistry.io/registry/bspo" }, { - "@id": "https://fairsharing.org/FAIRsharing.w4x6n4" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://fairsharing.org/FAIRsharing.mya1ff" + "@id": "https://bioregistry.io/registry/aism" }, { - "@id": "https://fairsharing.org/FAIRsharing.kj3m5n" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://fairsharing.org/FAIRsharing.ae8hpt" - }, + "@id": "https://bioregistry.io/registry/caro" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0851-6883" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COLAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/COLAO_0000000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "colao" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/RNAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.ontobee.org/ontology/GNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://edamontology.org/data_2605", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g78mbm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010285", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/POLBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000023", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "An alternative or synonymous prefix" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has alternative prefix" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#subPropertyOf": { + "@id": "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": { + "@id": "http://identifiers.org/idot/alternatePrefix" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dcterms", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dublin Core Metadata Initiative Terms" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.pwEima" + "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS" }, { - "@id": "https://fairsharing.org/FAIRsharing.xwqg9h" + "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms" }, { - "@id": "https://fairsharing.org/FAIRsharing.1jKfji" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dct" }, { - "@id": "https://fairsharing.org/FAIRsharing.9te3ev" + "@id": "https://fairsharing.org/FAIRsharing.9vtwjs" }, { - "@id": "https://fairsharing.org/FAIRsharing.CWzk3C" + "@id": "http://aber-owl.net/ontology/dcterms" }, { - "@id": "https://fairsharing.org/FAIRsharing.g7jbvn" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.azr389" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.2b04ae" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/" + }, + "https://bioregistry.io/schema/#0000005": "title", + "https://bioregistry.io/schema/#0000006": "http://purl.org/dc/terms/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://www.dublincore.org/specifications/dublin-core/dcmi-terms/dublin_core_terms.rdf" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nb6174b7d1201433680b115700d184ee9" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://fairsharing.org/FAIRsharing.2abjs5" + "@value": "dc.terms" }, { - "@id": "https://fairsharing.org/FAIRsharing.b7z8by" - }, + "@value": "dct" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.org/dc/terms/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/dc/terms/title" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dcterms" + } + }, + { + "@id": "_:Nb6174b7d1201433680b115700d184ee9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Michelle Futornick" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "futo@stanford.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.CELL_LINE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/citexplore", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CiteXplore" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.kbz5jh" + "@id": "https://fairsharing.org/FAIRsharing.619eqr" }, { - "@id": "https://fairsharing.org/FAIRsharing.xs6t67" - }, + "@id": "https://registry.bio2kg.org/resource/citexplore" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.qvxhb1" + "@value": "genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.xf30yc" + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.b5cc91" - }, + "@value": "preclinical studies" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/citexplore/" + }, + "https://bioregistry.io/schema/#0000005": "C6155", + "https://bioregistry.io/schema/#0000006": "https://europepmc.org/article/CTX/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2353-596X" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "CTX" + }, + "https://bioregistry.io/schema/#0000024": "https://europepmc.org/article/CTX/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://europepmc.org/article/CTX/C6155" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "citexplore" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/AspGD_LOCUS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/dcid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MOD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/rgd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rat Genome Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.0b7e54" + "@id": "https://fairsharing.org/FAIRsharing.pfg82t" }, { - "@id": "https://fairsharing.org/FAIRsharing.e08886" + "@id": "https://registry.bio2kg.org/resource/rgd" }, { - "@id": "https://fairsharing.org/FAIRsharing.mxx5rp" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.kx2md1" + "@id": "https://bioportal.bioontology.org/ontologies/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.knp11s" + "@id": "http://www.wikidata.org/entity/P3853" }, { - "@id": "https://fairsharing.org/FAIRsharing.g7t2hv" + "@id": "https://www.uniprot.org/database/DB-0091" }, { - "@id": "https://fairsharing.org/FAIRsharing.7mnebr" + "@id": "https://registry.identifiers.org/registry/rgd" }, { - "@id": "https://fairsharing.org/FAIRsharing.46s4nt" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd" }, { - "@id": "https://fairsharing.org/FAIRsharing.wnk2eq" + "@id": "http://edamontology.org/data_2620" }, { - "@id": "https://fairsharing.org/FAIRsharing.tke3y2" + "@id": "https://www.re3data.org/repository/r3d100010417" }, { - "@id": "https://fairsharing.org/FAIRsharing.353yat" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.d3pqw7" + "@id": "https://bioregistry.io/metaregistry/go/resolve/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.4cvwxa" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.7xkx69" + "@id": "http://aber-owl.net/ontology/RGD" }, { - "@id": "https://fairsharing.org/FAIRsharing.d95034" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.5mr9c5" + "@value": "human" }, { - "@id": "https://fairsharing.org/FAIRsharing.v9n3gk" + "@value": "gold standard" }, { - "@id": "https://fairsharing.org/FAIRsharing.9c1p18" + "@value": "function" }, { - "@id": "https://fairsharing.org/FAIRsharing.qe8tz8" + "@value": "phenotype" }, { - "@id": "https://fairsharing.org/FAIRsharing.nwgynk" + "@value": "dna" }, { - "@id": "https://fairsharing.org/FAIRsharing.595710" + "@value": "inbred rat strain" }, { - "@id": "https://fairsharing.org/FAIRsharing.q09hck" + "@value": "genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.2ajtcf" + "@value": "immunology" }, { - "@id": "https://fairsharing.org/FAIRsharing.89e853" + "@value": "biomedical science" }, { - "@id": "https://fairsharing.org/FAIRsharing.3xwMon" + "@value": "mouse" }, { - "@id": "https://fairsharing.org/FAIRsharing.y2qkst" + "@value": "variation" }, { - "@id": "https://fairsharing.org/FAIRsharing.f73xhd" + "@value": "genetic" }, { - "@id": "https://fairsharing.org/FAIRsharing.93ee19" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.zhwa8x" + "@value": "translational medicine" }, { - "@id": "https://fairsharing.org/FAIRsharing.c7f365" + "@value": "veterinary medicine" }, { - "@id": "https://fairsharing.org/FAIRsharing.7rngj0" + "@value": "proteomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.8hcczk" + "@value": "recombinant inbred rat" }, { - "@id": "https://fairsharing.org/FAIRsharing.vajn3f" + "@value": "genomic" }, { - "@id": "https://fairsharing.org/FAIRsharing.y3scf6" + "@value": "organism supplier" }, { - "@id": "https://fairsharing.org/FAIRsharing.wpxab1" + "@value": "molecular medicine" }, { - "@id": "https://fairsharing.org/FAIRsharing.e1byny" + "@value": "quantitative genetics" }, { - "@id": "https://fairsharing.org/FAIRsharing.8337e2" + "@value": "gene" }, { - "@id": "https://fairsharing.org/FAIRsharing.CugtbQ" + "@value": "qtl" }, { - "@id": "https://fairsharing.org/FAIRsharing.ca48xs" + "@value": "marker" }, { - "@id": "https://fairsharing.org/FAIRsharing.2ffmsb" + "@value": "disease" }, { - "@id": "https://fairsharing.org/FAIRsharing.b084yh" + "@value": "est" }, { - "@id": "https://fairsharing.org/FAIRsharing.zsgmvd" + "@value": "genome" }, { - "@id": "https://fairsharing.org/FAIRsharing.7hxxc4" + "@value": "rat" }, { - "@id": "https://fairsharing.org/FAIRsharing.a8z6gz" + "@value": "behavior" }, { - "@id": "https://fairsharing.org/FAIRsharing.78d3ad" + "@value": "mutant" }, { - "@id": "https://fairsharing.org/FAIRsharing.cpneh8" + "@value": "comparative genomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.mzc066" + "@value": "congenic rat" }, { - "@id": "https://fairsharing.org/FAIRsharing.ry1ezg" + "@value": "map" }, { - "@id": "https://fairsharing.org/FAIRsharing.175hsz" + "@value": "knockout" }, { - "@id": "https://fairsharing.org/FAIRsharing.gdszhh" + "@value": "faseb list" }, { - "@id": "https://fairsharing.org/FAIRsharing.vssch2" + "@value": "genotype" }, { - "@id": "https://fairsharing.org/FAIRsharing.hw3bh2" + "@value": "data analysis service" }, { - "@id": "https://fairsharing.org/FAIRsharing.8jsya3" + "@value": "strain" }, { - "@id": "https://fairsharing.org/FAIRsharing.1gr4tz" + "@value": "pathway" }, { - "@id": "https://fairsharing.org/FAIRsharing.anpj91" + "@value": "sequence" }, { - "@id": "https://fairsharing.org/FAIRsharing.3ngg40" + "@value": "physiology" }, { - "@id": "https://fairsharing.org/FAIRsharing.6dfe9b" + "@value": "model organism" }, { - "@id": "https://fairsharing.org/FAIRsharing.8qzmtr" - }, + "@value": "phenomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rgd.mcw.edu/" + }, + "https://bioregistry.io/schema/#0000005": "7499841", + "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6443-9376" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "RGD" + }, + "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=7499841" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rgd" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3937", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://orcid.org/0000-0001-9370-918X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Daniel Sonenshine" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dsonensh@odu.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/easychair.cfp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Conferences in EasyChair", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EasyChair Call for Paper" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.c26a4e" + "@value": "metascience" }, { - "@id": "https://fairsharing.org/FAIRsharing.atygwy" - }, + "@value": "conferences" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://easychair.org/cfp/" + }, + "https://bioregistry.io/schema/#0000005": "SysBioCancer2022", + "https://bioregistry.io/schema/#0000006": "https://easychair.org/cfp/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://easychair.org/cfp/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://easychair.org/cfp/SysBioCancer2022" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "easychair.cfp" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://www.wikidata.org/entity/P1930", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/sep", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/paxdb.organism", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PaxDb Organism" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.gkw1w8" + "@id": "https://registry.identifiers.org/registry/paxdb.organism" }, { - "@id": "https://fairsharing.org/FAIRsharing.yk1krv" + "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.ORGANISM" }, { - "@id": "https://fairsharing.org/FAIRsharing.3b36hk" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pax-db.org/" + }, + "https://bioregistry.io/schema/#0000005": "9606", + "https://bioregistry.io/schema/#0000006": "http://pax-db.org/#!species/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://pax-db.org/#!species/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pax-db.org/#!species/9606" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "paxdb.organism" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubmed", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TRANS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/gro", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Regulation Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ayjdsm" + "@id": "https://bioportal.bioontology.org/ontologies/GRO" }, { - "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N" - }, + "@id": "http://aber-owl.net/ontology/GRO" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html" + }, + "https://bioregistry.io/schema/#0000005": "Lipid", + "https://bioregistry.io/schema/#0000006": "http://www.bootstrep.eu/ontology/GRO#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/GRO/5/gro.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Nb666dc69b4614275bdcddecad7d0f15a" + }, + "https://bioregistry.io/schema/#0000024": "http://www.bootstrep.eu/ontology/GRO#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bootstrep.eu/ontology/GRO#Lipid" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gro" + } + }, + { + "@id": "_:Nb666dc69b4614275bdcddecad7d0f15a", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vivian Lee" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "vlee@ebi.ac.uk" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012193", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/panther.pthcmp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pdbligand", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/oboinowl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/geneontology/go-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OBO in OWL" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.3e88d6" + "@id": "https://fairsharing.org/FAIRsharing.aa0eat" }, { - "@id": "https://fairsharing.org/FAIRsharing.493qns" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat" }, { - "@id": "https://fairsharing.org/FAIRsharing.y1mmbv" + "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl" }, { - "@id": "https://fairsharing.org/FAIRsharing.zcn4w4" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.5701h1" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.4shj9c" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/geneontology/go-ontology/tree/master/contrib" + }, + "https://bioregistry.io/schema/#0000005": "hasDbXref", + "https://bioregistry.io/schema/#0000006": "http://www.geneontology.org/formats/oboInOwl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/geneontology/go-ontology/raw/master/contrib/oboInOwl.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://fairsharing.org/FAIRsharing.kg1x4z" + "@value": "oio" }, { - "@id": "https://fairsharing.org/FAIRsharing.33yggg" - }, + "@value": "oboformat" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.geneontology.org/formats/oboInOwl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.geneontology.org/formats/oboInOwl#hasDbXref" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oboinowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/dbGAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.identifiers.org/registry/odam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_2389", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0016", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_370", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "http://aber-owl.net/ontology/GNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ny3z9j", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://edamontology.org/data_2787", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/funcbase.human", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FuncBase Human" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.7q4gsz" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human" }, { - "@id": "https://fairsharing.org/FAIRsharing.8ktkqy" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN" }, { - "@id": "https://fairsharing.org/FAIRsharing.2q8c28" - }, + "@id": "https://registry.identifiers.org/registry/funcbase.human" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://func.mshri.on.ca/human/" + }, + "https://bioregistry.io/schema/#0000005": "119514", + "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/human/genes/list_functional_scores/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/human/genes/list_functional_scores/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://func.mshri.on.ca/human/genes/list_functional_scores/119514" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "funcbase.human" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/go", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/dc_cl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dendritic cell" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.wp0134" + "@id": "https://www.obofoundry.org/ontology/dc_cl" }, { - "@id": "https://fairsharing.org/FAIRsharing.psn0h2" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/DC_CL" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.karvzj" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.evfe2s" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.dukeontologygroup.org/Projects.html" + }, + "https://bioregistry.io/schema/#0000005": "0000003", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DC_CL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1617-8244" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DC_CL_", + "https://bioregistry.io/schema/#0000029": { + "@value": "dc_cl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ero", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0002-9744-8914", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tobias Schulze" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "tobias.schulze@ufz.de" + } + }, + { + "@id": "https://bartoc.org/en/node/447", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/rebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/foaf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Friend of a Friend" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.fx0mw7" + "@id": "https://bioregistry.io/metaregistry/biocontext/foaf" }, { - "@id": "https://fairsharing.org/FAIRsharing.bgkyd7" + "@id": "http://aber-owl.net/ontology/foaf" }, { - "@id": "https://fairsharing.org/FAIRsharing.4dvtcz" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foaf" }, { - "@id": "https://fairsharing.org/FAIRsharing.t31wcb" - }, + "@id": "https://bioportal.bioontology.org/ontologies/FOAF" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://xmlns.com/foaf/spec/" + }, + "https://bioregistry.io/schema/#0000005": "familyName", + "https://bioregistry.io/schema/#0000006": "http://xmlns.com/foaf/0.1/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/foaf/1/foaf.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N2c879c99261d461d9a37ca99cbbfcbb7" + }, + "https://bioregistry.io/schema/#0000024": "http://xmlns.com/foaf/0.1/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://xmlns.com/foaf/0.1/familyName" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "foaf" + } + }, + { + "@id": "_:N2c879c99261d461d9a37ca99cbbfcbb7", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rafael Gonçalves" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rafael.goncalves@stanford.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/aspgd.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AspGD Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.ja9cdq" + "@id": "https://registry.identifiers.org/registry/aspgd.protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.9y8f0n" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aspgd.protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.t3snf" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.PROTEIN" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.aspgd.org/" + }, + "https://bioregistry.io/schema/#0000005": "ASPL0000349247", + "https://bioregistry.io/schema/#0000006": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=ASPL0000349247" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "aspgd.protein" + } + }, + { + "@id": "https://bioregistry.io/registry/umbbd", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://fairsharing.org/FAIRsharing.j75srj" + "@id": "https://bioregistry.io/registry/umbbd.enzyme" }, { - "@id": "https://fairsharing.org/FAIRsharing.rja8qp" + "@id": "https://bioregistry.io/registry/umbbd.reaction" }, { - "@id": "https://fairsharing.org/FAIRsharing.c886cd" + "@id": "https://bioregistry.io/registry/umbbd.pathway" }, { - "@id": "https://fairsharing.org/FAIRsharing.LYsiMd" + "@id": "https://bioregistry.io/registry/umbbd.rule" }, { - "@id": "https://fairsharing.org/FAIRsharing.9091d9" - }, + "@id": "https://bioregistry.io/registry/umbbd.compound" + } + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dbSNP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HUGE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-6686-5475", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "John Westbrook" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jwest@rcsb.rutgers.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biocyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ECAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/fsnp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/funcbase.mouse", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/sbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.fb99fa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/bioproject", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioProject" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.48e326" + "@id": "https://www.re3data.org/repository/r3d100013330" }, { - "@id": "https://fairsharing.org/FAIRsharing.y9x8wk" + "@id": "https://fairsharing.org/FAIRsharing.aqhv1y" }, { - "@id": "https://fairsharing.org/FAIRsharing.9kahy4" + "@id": "https://registry.identifiers.org/registry/bioproject" }, { - "@id": "https://fairsharing.org/FAIRsharing.3wbgm0" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPROJECT" }, { - "@id": "https://fairsharing.org/FAIRsharing.sjf113" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioproject" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/bioproject" + }, + "https://bioregistry.io/schema/#0000005": "PRJDB3", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1", + "https://bioregistry.io/schema/#0000008": "^PRJ[DEN][A-Z]\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/bioproject/?term=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJDB3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bioproject" + } + }, + { + "@id": "https://bioregistry.io/registry/matrixdb.association", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MatrixDB Association" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.e7skwg" + "@id": "https://registry.identifiers.org/registry/matrixdb.association" }, { - "@id": "https://fairsharing.org/FAIRsharing.85k1jm" + "@id": "https://bioregistry.io/metaregistry/biocontext/MATRIXDB.ASSOCIATION" }, { - "@id": "https://fairsharing.org/FAIRsharing.4m97ah" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://matrixdb.univ-lyon1.fr/" + }, + "https://bioregistry.io/schema/#0000005": "P00747__P07355", + "https://bioregistry.io/schema/#0000006": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/matrixdb.association:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=P00747__P07355&class=Association" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "matrixdb.association" + } + }, + { + "@id": "https://registry.identifiers.org/registry/medgen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/dsm5", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.t3nprm" + "@id": "http://www.wikidata.org/entity/P1930" }, { - "@id": "https://fairsharing.org/FAIRsharing.65tdnz" - }, + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://en.wikipedia.org/wiki/DSM-5" + }, + "https://bioregistry.io/schema/#0000005": "312.33", + "https://bioregistry.io/schema/#0000008": "^\\d{3}\\.\\d{2}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "dsm-v" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dsm5" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PHIPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/virgen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0001-9853-5668", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Philippe Rocca-Serra" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "philippe.rocca-serra@oerc.ox.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/registry/asap", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "A Systematic Annotation Package for Community Analysis of Genomes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.pqzyd5" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ASAP" }, { - "@id": "https://fairsharing.org/FAIRsharing.af5655" + "@id": "https://fairsharing.org/FAIRsharing.anpa6" }, { - "@id": "https://fairsharing.org/FAIRsharing.y2qws7" + "@id": "https://bioregistry.io/metaregistry/biocontext/ASAP" }, { - "@id": "https://fairsharing.org/FAIRsharing.dxx0c" + "@id": "https://registry.identifiers.org/registry/asap" }, { - "@id": "https://fairsharing.org/FAIRsharing.5ab0n7" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap" }, { - "@id": "https://fairsharing.org/FAIRsharing.e3t0yw" + "@id": "https://registry.bio2kg.org/resource/asap" }, { - "@id": "https://fairsharing.org/FAIRsharing.phk7dd" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ASAP" }, { - "@id": "https://fairsharing.org/FAIRsharing.f1449d" - }, + "@id": "https://www.re3data.org/repository/r3d100010666" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.0a2576" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.g1qrqs" + "@value": "developmental biology" }, { - "@id": "https://fairsharing.org/FAIRsharing.ftamrc" + "@value": "gene expression" }, { - "@id": "https://fairsharing.org/FAIRsharing.wrvze3" + "@value": "genome" }, { - "@id": "https://fairsharing.org/FAIRsharing.901nkj" - }, + "@value": "comparative genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://asap.ahabs.wisc.edu/asap/home.php" + }, + "https://bioregistry.io/schema/#0000005": "ABE-0009634", + "https://bioregistry.io/schema/#0000006": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=ABE-0009634" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "asap" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/pirsf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PIR Superfamily Classification System" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.dyqz3y" + "@id": "https://registry.bio2kg.org/resource/pirsf" }, { - "@id": "https://fairsharing.org/FAIRsharing.910c39" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF" }, { - "@id": "https://fairsharing.org/FAIRsharing.wsfk5z" + "@id": "https://fairsharing.org/FAIRsharing.vssch2" }, { - "@id": "https://fairsharing.org/FAIRsharing.askzq4" + "@id": "http://edamontology.org/data_1136" }, { - "@id": "https://fairsharing.org/FAIRsharing.jr30xc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pirsf" }, { - "@id": "https://fairsharing.org/FAIRsharing.dg1f0e" + "@id": "https://www.uniprot.org/database/DB-0079" }, { - "@id": "https://fairsharing.org/FAIRsharing.r41qhx" + "@id": "https://bioregistry.io/metaregistry/biocontext/PIRSF" }, { - "@id": "https://fairsharing.org/FAIRsharing.dx30m8" - }, + "@id": "https://registry.identifiers.org/registry/pirsf" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://fairsharing.org/FAIRsharing.dw22y3" + "@value": "life science" }, { - "@id": "https://fairsharing.org/FAIRsharing.8zqzm9" + "@value": "protein" }, { - "@id": "https://fairsharing.org/FAIRsharing.d5ff6e" + "@value": "proteomics" }, { - "@id": "https://fairsharing.org/FAIRsharing.cnwx8c" + "@value": "structure" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FAIRSharing" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://fairsharing.org/" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "FAIRsharing.62qk8w" + "@id": "https://pir.georgetown.edu/" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://fairsharing.org/$1" + "https://bioregistry.io/schema/#0000005": "PIRSF000100", + "https://bioregistry.io/schema/#0000006": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1", + "https://bioregistry.io/schema/#0000008": "^PIRSF\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=PIRSF000100" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" + "https://bioregistry.io/schema/#0000029": { + "@value": "pirsf" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DIDEO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mycobank", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://edamontology.org/data_1039", + "@id": "http://edamontology.org/data_1089", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMRRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/greengenes", + "@id": "https://registry.bio2kg.org/resource/dbsnp", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/spike.map", + "@id": "https://bioregistry.io/registry/bigg.compartment", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps.", + "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SPIKE Map" + "@value": "BiGG Compartment" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/spike" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spike.map" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP" - }, - { - "@id": "https://registry.identifiers.org/registry/spike.map" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.COMPARTMENT" }, { - "@value": "gene expression" + "@id": "https://registry.identifiers.org/registry/bigg.compartment" }, { - "@value": "pathway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.compartment" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.cs.tau.ac.il/~spike/" + "@id": "http://bigg.ucsd.edu/compartments/" }, - "https://bioregistry.io/schema/#0000005": "spike00001", - "https://bioregistry.io/schema/#0000006": "http://www.cs.tau.ac.il/~spike/maps/$1.html", - "https://bioregistry.io/schema/#0000008": "^spike\\d{5}$", + "https://bioregistry.io/schema/#0000005": "c", + "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/compartments/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/spike.map:", + "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/compartments/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.cs.tau.ac.il/~spike/maps/spike00001.html" + "@id": "http://bigg.ucsd.edu/compartments/c" }, "https://bioregistry.io/schema/#0000029": { - "@value": "spike.map" + "@value": "bigg.compartment" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PROTEOMICSDB.PROTEIN", + "@id": "https://fairsharing.org/FAIRsharing.v06c4q", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/omia", + "@id": "https://fairsharing.org/FAIRsharing.askzq4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-9950-5209", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Richard Cyganiak" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "richard@cyganiak.de" + } + }, + { + "@id": "https://bioregistry.io/registry/hepro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in 363 animal species (other than human and mouse and rats and zebrafish, which have their own resources).", + "http://purl.org/dc/terms/description": "HEPRO is an ontology of informational entities and processes related to health procedures and health activities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OpenLHS/HEPRO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Online Mendelian Inheritance in Animals" + "@value": "Health Procedure Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/omia" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OMIA" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/omia" - }, - { - "@id": "https://registry.identifiers.org/registry/omia" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "classification" - }, - { - "@value": "model organism database" - }, - { - "@value": "gene" - }, - { - "@value": "traits" - }, - { - "@value": "disorders" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://omia.org" + "@id": "https://openlhs.github.io/HEPRO/" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HEPRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/OpenLHS/HEPRO/raw/main/HEPRO.owl" }, - "https://bioregistry.io/schema/#0000005": "1000", - "https://bioregistry.io/schema/#0000006": "https://omia.org/OMIA$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5520-6597" + "@id": "https://orcid.org/0000-0002-3336-2476" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HEPRO_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/00kybxq39" }, - "https://bioregistry.io/schema/#0000024": "https://omia.org/OMIA", "https://bioregistry.io/schema/#0000027": { - "@id": "https://omia.org/OMIA1000" + "@id": "http://purl.obolibrary.org/obo/HEPRO_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "omia" + "@value": "hepro" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fma", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VANDF", + "@id": "https://registry.bio2kg.org/resource/fix", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://cropontology.org/ontology/CO_324", + "@id": "https://www.uniprot.org/database/DB-0005", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/phenolexplorer", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_Compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario", + "@id": "https://www.uniprot.org/database/DB-0069", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDPD", + "@id": "https://registry.bio2kg.org/resource/neurolex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NGL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/refseq", + "@id": "https://fairsharing.org/FAIRsharing.psn0h2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/void", + "@id": "http://www.wikidata.org/entity/P2689", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/funcbase.fly", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary.", + "http://purl.org/dc/terms/description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vocabulary of Interlinked Datasets" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biocontext/void" + "@value": "FuncBase Fly" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.FLY" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.fly" + }, + { + "@id": "https://registry.identifiers.org/registry/funcbase.fly" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://vocab.deri.ie/void" + "@id": "http://func.mshri.on.ca/fly" }, - "https://bioregistry.io/schema/#0000005": "feature", - "https://bioregistry.io/schema/#0000006": "http://rdfs.org/ns/void#$1", + "https://bioregistry.io/schema/#0000005": "10194", + "https://bioregistry.io/schema/#0000006": "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rdfs.org/ns/void#", + "https://bioregistry.io/schema/#0000024": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://rdfs.org/ns/void#feature" + "@id": "http://func.mshri.on.ca/fly/genes/list_functional_scores/10194" }, "https://bioregistry.io/schema/#0000029": { - "@value": "void" + "@value": "funcbase.fly" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BSPO", + "@id": "https://bioportal.bioontology.org/ontologies/MP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://orcid.org/0000-0002-0341-4888", + "@id": "https://registry.identifiers.org/registry/gcst", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dg.4dfc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0002-2244-7917", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Federica Quaglia" + "@value": "Ceri Van Slyke" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "f.quaglia@ibiom.cnr.it" + "@value": "van_slyke@zfin.org" } }, { - "@id": "https://www.re3data.org/repository/r3d100010539", + "@id": "https://registry.bio2kg.org/resource/t3db", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad", + "@id": "https://bioregistry.io/metaregistry/biocontext/GWASCENTRAL.STUDY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dictybase.est", + "@id": "https://www.obofoundry.org/ontology/ypo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/evoc", + "@id": "https://bioregistry.io/metaregistry/biocontext/YID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/LOINC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0017", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/xenbase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_GROSSANATOMY", + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB-CCD", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://edamontology.org/data_2626", + "@id": "https://bioregistry.io/registry/ipi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Protein Index" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IPI" + }, + { + "@id": "https://registry.bio2kg.org/resource/ipi" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ebi.ac.uk/IPI" + }, + "https://bioregistry.io/schema/#0000005": "IPI00000001", + "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ipi:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=IPI00000001&format=default" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ipi" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.LIGAND", + "@id": "https://fairsharing.org/FAIRsharing.91yrz6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SEED.COMPOUND", + "@id": "https://fairsharing.org/FAIRsharing.3me82d", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3zqvaf", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bioportal", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0001-5472-917X", + "@id": "https://registry.identifiers.org/registry/crop2ml", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0003-0705-9809", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stacia R Engel" + "@value": "Rahuman Sheriff" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "stacia@stanford.edu" + "@value": "sheriff@ebi.ac.uk" } }, { - "@id": "https://bioregistry.io/registry/skip", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isfinder", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/goa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/worldavatar.kin", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine.", + "http://purl.org/dc/terms/description": "Represents chemical kinetic reaction mechanisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stemcell Knowledge and Information Portal" + "@value": "Ontology for Chemical Kinetic Reaction Mechanisms" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/SKIP" + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://skip.stemcellinformatics.org/en/" + "@id": "http://www.theworldavatar.com/ontokin/" + }, + "https://bioregistry.io/schema/#0000005": "ElementNumber", + "https://bioregistry.io/schema/#0000006": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl" }, - "https://bioregistry.io/schema/#0000005": "SKIP001214", - "https://bioregistry.io/schema/#0000006": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1", - "https://bioregistry.io/schema/#0000008": "^SKIP\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=", + "https://bioregistry.io/schema/#0000024": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#", "https://bioregistry.io/schema/#0000027": { - "@id": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=SKIP001214" + "@id": "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#ElementNumber" }, "https://bioregistry.io/schema/#0000029": { - "@value": "skip" + "@value": "worldavatar.kin" } }, { - "@id": "https://registry.identifiers.org/registry/foodb.compound", + "@id": "https://www.obofoundry.org/ontology/ado", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.obofoundry.org/ontology/pcl", + "@id": "https://bioregistry.io/registry/hgmd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Gene Mutation Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://edamontology.org/data_3265" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD" + }, + { + "@id": "https://registry.identifiers.org/registry/hgmd" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgmd" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.hgmd.cf.ac.uk/ac/index.php" + }, + "https://bioregistry.io/schema/#0000005": "CALM1", + "https://bioregistry.io/schema/#0000006": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=CALM1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hgmd" } }, { - "@id": "https://bioregistry.io/registry/hpscreg", + "@id": "https://fairsharing.org/FAIRsharing.j0ezpm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/uniprot", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/pmp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines).", + "http://purl.org/dc/terms/description": "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Pluripotent Stem Cell Registry" + "@value": "Protein Model Portal" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7C0aVE" + "@id": "https://registry.identifiers.org/registry/pmp" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmp" }, { - "@id": "https://www.re3data.org/repository/r3d100012863" + "@id": "https://registry.bio2kg.org/resource/pmp" }, { - "@id": "https://registry.identifiers.org/registry/hpscreg" + "@id": "https://bioregistry.io/metaregistry/biocontext/PMP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "prediction" }, { - "@value": "life science" + "@value": "structure" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://hpscreg.eu/" + "@id": "http://www.proteinmodelportal.org/" }, - "https://bioregistry.io/schema/#0000005": "BCRTi001-A", - "https://bioregistry.io/schema/#0000006": "https://hpscreg.eu/cell-line/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8411-3226" + "https://bioregistry.io/schema/#0000005": "Q0VCA6", + "https://bioregistry.io/schema/#0000006": "http://www.proteinmodelportal.org/query/uniprot/$1", + "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" }, - "https://bioregistry.io/schema/#0000024": "https://hpscreg.eu/cell-line/", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.proteinmodelportal.org/query/uniprot/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://hpscreg.eu/cell-line/BCRTi001-A" + "@id": "http://www.proteinmodelportal.org/query/uniprot/Q0VCA6" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hpscreg" + "@value": "pmp" } }, { - "@id": "https://bioregistry.io/collection/0000005", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/google.patent", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bartoc.org/en/node/2053", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/registry/amphx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "This collection contains various brain atlases from the Allen Institute." + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/amphx_ontology" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The Amphioxus Development and Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dmba" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx" }, { - "@id": "https://bioregistry.io/registry/pba" + "@id": "https://bioportal.bioontology.org/ontologies/AMPHX" }, { - "@id": "https://bioregistry.io/registry/mba" + "@id": "http://aber-owl.net/ontology/AMPHX" }, { - "@id": "https://bioregistry.io/registry/dhba" + "@id": "https://www.obofoundry.org/ontology/amphx" }, { - "@id": "https://bioregistry.io/registry/hba" + "@id": "http://www.ontobee.org/ontology/AMPHX" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Allen Institute Ontologies" + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/EBISPOT/amphx_ontology" + }, + "https://bioregistry.io/schema/#0000005": "1000160", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AMPHX_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/amphx.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/uberon" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7577-5028" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AMPHX_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/AMPHX_1000160" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "amphx" } }, { - "@id": "https://bioregistry.io/registry/cryptodb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/birnlex", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/description": "The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CryptoDB" + "@value": "Biomedical Informatics Research Network Lexicon" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.re3data.org/repository/r3d100012265" + "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" }, { - "@id": "https://registry.identifiers.org/registry/cryptodb" + "@id": "http://aber-owl.net/ontology/BIRNLEX" }, { - "@id": "https://fairsharing.org/FAIRsharing.t3nprm" - }, + "@id": "https://fairsharing.org/FAIRsharing.jedbbt" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cryptodb" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRYPTODB" + "@value": "ontology" }, { - "@id": "https://registry.bio2kg.org/resource/cryptodb" + "@value": "anatomy" } ], - "http://www.w3.org/ns/dcat#keyword": [ + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" + }, + "https://bioregistry.io/schema/#0000005": "2023", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/birnlex_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/BIRNLEX/1/birnlex.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N24956e04a0274b28aee5d0330adf9db6" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/birnlex_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/birnlex_2023" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "birnlex" + } + }, + { + "@id": "_:N24956e04a0274b28aee5d0330adf9db6", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "William Bug" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wbug@ncmir.ucsd.edu" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/rnajunction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of RNA Junctions and Kissing loop Structures" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genome" + "@id": "https://fairsharing.org/FAIRsharing.zzgvrv" }, { - "@value": "parasitology" + "@id": "https://registry.bio2kg.org/resource/rnajunction" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "structure" }, { - "@value": "genomics" + "@value": "rna" }, { - "@value": "functional genomics" + "@value": "structural biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cryptodb.org/cryptodb/" + "@id": "http://rnajunction.abcc.ncifcrf.gov" }, - "https://bioregistry.io/schema/#0000005": "cgd7_230", - "https://bioregistry.io/schema/#0000006": "https://cryptodb.org/cryptodb/app/record/gene/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000005": "8668", + "https://bioregistry.io/schema/#0000006": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4446-6200" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://cryptodb.org/cryptodb/app/record/gene/", + "https://bioregistry.io/schema/#0000024": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cryptodb.org/cryptodb/app/record/gene/cgd7_230" + "@id": "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=8668" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cryptodb" + "@value": "rnajunction" } }, { - "@id": "http://www.ontobee.org/ontology/OBI", + "@id": "http://edamontology.org/data_1147", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pscdb", + "@id": "http://edamontology.org/data_2642", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso", + "@id": "https://bioregistry.io/registry/mgnify.proj", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MGnify Project" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/mgnify.proj" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.proj" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/metagenomics" + }, + "https://bioregistry.io/schema/#0000005": "ERP004492", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/metagenomics/projects/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/metagenomics/projects/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/metagenomics/projects/ERP004492" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mgnify.proj" } }, { - "@id": "http://aber-owl.net/ontology/OAE", + "@id": "http://aber-owl.net/ontology/BIRNLEX", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/emolecules", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Coriell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "http://www.wikidata.org/entity/P638", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://aber-owl.net/ontology/RO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.PROTEIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/emapa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Catalog of purchasable reagents and building blocks", + "http://purl.org/dc/terms/description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/mouse-anatomy-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Reaxys eMolecules" + "@value": "Mouse Developmental Anatomy Ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.j0fa1d" + }, + { + "@id": "https://www.obofoundry.org/ontology/emapa" + }, + { + "@id": "https://bartoc.org/en/node/549" + }, + { + "@id": "http://www.ontobee.org/ontology/EMAPA" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/EMAPA" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EMAPA" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EMAPA" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa" + }, + { + "@id": "http://aber-owl.net/ontology/EMAPA" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "chemistry" + "@value": "ontology" }, { - "@value": "reagents" + "@value": "anatomy" }, { - "@value": "vendor" + "@value": "developmental biology" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://reaxys.emolecules.com" + "@id": "http://www.informatics.jax.org/expression.shtml" }, - "https://bioregistry.io/schema/#0000005": "491187", - "https://bioregistry.io/schema/#0000006": "https://reaxys.emolecules.com/cgi-bin/more?vid=$1", + "https://bioregistry.io/schema/#0000005": "26753", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EMAPA_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/emapa.owl" + }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://reaxys.emolecules.com/cgi-bin/more?vid=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0956-8634" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "EMAPA_RETIRED" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EMAPA_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://reaxys.emolecules.com/cgi-bin/more?vid=491187" + "@id": "http://purl.obolibrary.org/obo/EMAPA_26753" }, "https://bioregistry.io/schema/#0000029": { - "@value": "emolecules" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NCRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@value": "emapa" } }, { - "@id": "https://registry.identifiers.org/registry/rfam", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/3dmet", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRNAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://orcid.org/0000-0001-9842-9718", + "@id": "https://orcid.org/0000-0002-2193-0704", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stian Soiland-Reyes" + "@value": "Jade Hotchkiss" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "stian@soiland-reyes.com" + "@value": "giant.plankton@gmail.com" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OMIM", + "@id": "https://bioregistry.io/registry/ped", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/ped.ensemble" + }, "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Protein Ensemble Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/ped" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4ef690" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "botany" + }, + { + "@value": "plant genetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://proteinensemble.org/" + }, + "https://bioregistry.io/schema/#0000005": "PED00037", + "https://bioregistry.io/schema/#0000006": "https://proteinensemble.org/$1", + "https://bioregistry.io/schema/#0000008": "^PED\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://proteinensemble.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://proteinensemble.org/PED00037" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ped" } }, { - "@id": "https://bioregistry.io/registry/validatordb", + "@id": "https://bioregistry.io/registry/miapa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of validation results for ligands and non-standard residues in the Protein Data Bank.", + "http://purl.org/dc/terms/description": "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/evoinfo/miapa" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ValidatorDB" + "@value": "Minimum Anformation About a Phylogenetic Analysis Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.c9psgb" + "@id": "http://www.ontobee.org/ontology/MIAPA" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/VALIDATORDB" + "@id": "https://bioregistry.io/metaregistry/biocontext/MIAPA" }, { - "@id": "https://registry.identifiers.org/registry/validatordb" + "@id": "http://aber-owl.net/ontology/MIAPA" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/validatordb" + "@id": "https://bioportal.bioontology.org/ontologies/MIAPA" + }, + { + "@id": "https://www.obofoundry.org/ontology/miapa" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ca48xs" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "obo" + }, + { + "@value": "phylogenetics" + }, + { + "@value": "phylogeny" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/" + "@id": "http://www.evoio.org/wiki/MIAPA" }, - "https://bioregistry.io/schema/#0000005": "2h6o", - "https://bioregistry.io/schema/#0000006": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9\\/]+$", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/pdb" + "https://bioregistry.io/schema/#0000005": "0000010", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIAPA_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/miapa.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0682-3089" + "@id": "https://orcid.org/0000-0001-9107-0714" }, - "https://bioregistry.io/schema/#0000024": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIAPA_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/2h6o" + "@id": "http://purl.obolibrary.org/obo/MIAPA_0000010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "validatordb" + "@value": "miapa" } }, { - "@id": "https://registry.bio2kg.org/resource/spdo", + "@id": "https://registry.identifiers.org/registry/unists", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/irefweb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.model", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010785", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/insdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PLANA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/grsdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c86b48", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/igsn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/chemidplus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/RXNO", + "@id": "https://bioregistry.io/metaregistry/biocontext/CST", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MIM", + "@id": "https://fairsharing.org/FAIRsharing.cpneh8", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/WBbt", + "@id": "https://bioregistry.io/registry/eurofir", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "European Food Information Resource Network" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.eurofir.org" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "eurofir" } }, { - "@id": "https://registry.identifiers.org/registry/occ", + "@id": "https://bioportal.bioontology.org/ontologies/OVAE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/treefam", + "@id": "https://bioregistry.io/registry/taxrank", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments.", + "http://purl.org/dc/terms/description": "A vocabulary of taxonomic ranks (species, family, phylum, etc)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/phenoscape/taxrank" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "TreeFam" + "@value": "Taxonomic rank vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.uniprot.org/database/DB-0185" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treefam" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank" }, { - "@id": "https://registry.identifiers.org/registry/treefam" + "@id": "http://www.ontobee.org/ontology/TAXRANK" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM" + "@id": "https://registry.bio2kg.org/resource/taxrank" }, { - "@id": "https://registry.bio2kg.org/resource/treefam" + "@id": "https://fairsharing.org/FAIRsharing.p1sejz" + }, + { + "@id": "https://www.obofoundry.org/ontology/taxrank" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK" + }, + { + "@id": "http://aber-owl.net/ontology/TAXRANK" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "taxonomy" }, { - "@value": "classification" + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.treefam.org/" + "@id": "https://github.com/phenoscape/taxrank" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAXRANK_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/taxrank.owl" }, - "https://bioregistry.io/schema/#0000005": "TF101014", - "https://bioregistry.io/schema/#0000006": "http://www.treefam.org/family/$1", - "https://bioregistry.io/schema/#0000008": "^\\w{1,2}\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.treefam.org/family/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8688-6599" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAXRANK_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.treefam.org/family/TF101014" + "@id": "http://purl.obolibrary.org/obo/TAXRANK_0000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "treefam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@value": "taxrank" } }, { - "@id": "https://registry.bio2kg.org/resource/cutg", + "@id": "https://registry.identifiers.org/registry/bgee.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/cl", + "@id": "https://bioregistry.io/metaregistry/biocontext/IUPHAR.RECEPTOR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IGSR", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.ontobee.org/ontology/STATO", + "@id": "https://registry.identifiers.org/registry/funcbase.yeast", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/ped", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.substance", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/biolink", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.", + "@id": "http://www.wikidata.org/entity/P7718", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/biolink/biolink-model" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Biolink Model" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/BIOLINK" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ad9d85" - }, - { - "@id": "https://registry.identifiers.org/registry/biolink" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "medical biotechnology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "functional genomics" - }, - { - "@value": "medical informatics" - }, - { - "@value": "translational medicine" - }, - { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://biolink.github.io/biolink-model/" - }, - "https://bioregistry.io/schema/#0000005": "Gene", - "https://bioregistry.io/schema/#0000006": "https://w3id.org/biolink/vocab/$1", - "https://bioregistry.io/schema/#0000008": "^\\S+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/BIOLINK/52/biolink.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" - }, - "https://bioregistry.io/schema/#0000024": "https://w3id.org/biolink/vocab/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://w3id.org/biolink/vocab/Gene" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biolink" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride", + "@id": "https://registry.identifiers.org/registry/cl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/yid", + "@id": "https://bioregistry.io/registry/opb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].", + "http://purl.org/dc/terms/description": "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yeast Intron Database v3" + "@value": "Ontology of Physics for Biology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/yid" + "@id": "https://bioregistry.io/metaregistry/biocontext/OPB" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/YID" + "@id": "https://bioportal.bioontology.org/ontologies/OPB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://compbio.soe.ucsc.edu/yeast_introns.html" - }, - "https://bioregistry.io/schema/#0000005": "SNR17A", - "https://bioregistry.io/schema/#0000006": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=SNR17A" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "yid" - } - }, - { - "@id": "https://bioregistry.io/registry/co_343", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "version 2019 - pvs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Yam ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb" + }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343" + "@id": "http://aber-owl.net/ontology/OPB" }, { - "@id": "https://fairsharing.org/FAIRsharing.7e9cff" + "@id": "https://registry.bio2kg.org/resource/opb" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_343" + "@id": "https://fairsharing.org/FAIRsharing.qcceez" }, { - "@id": "https://cropontology.org/ontology/CO_343" + "@id": "https://registry.identifiers.org/registry/opb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "agriculture" + "@value": "structure" }, { "@value": "ontology" }, { - "@value": "botany" + "@value": "physics" }, { "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_343/Yam" + "@id": "http://bioportal.bioontology.org/ontologies/OPB" }, - "https://bioregistry.io/schema/#0000005": "0100010", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_343:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "00573", + "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_343/Yam/owl" + "@id": "http://aber-owl.net/media/ontologies/OPB/13/opb.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:N8b7c2badcabc42edbc9571418c5a1d77" + "@id": "https://orcid.org/0000-0002-2390-6572" }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_343:", + "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_343:0100010" + "@id": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_00573" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_343" - } - }, - { - "@id": "_:N8b7c2badcabc42edbc9571418c5a1d77", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Crop Ontology Helpdesk" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "helpdesk@cropontology-curationtool.org" + "@value": "opb" } }, { - "@id": "https://bioregistry.io/registry/pmap.substratedb", + "@id": "https://bioregistry.io/registry/atfdb.family", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates.", + "http://purl.org/dc/terms/description": "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "SubstrateDB" + "@value": "Animal TFDB Family" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb" - }, - { - "@id": "https://registry.bio2kg.org/resource/pmap.substratedb" - }, - { - "@id": "https://registry.identifiers.org/registry/pmap.substratedb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/ATFDB.FAMILY" }, { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atfdb.family" }, { - "@value": "domain" + "@id": "https://registry.identifiers.org/registry/atfdb.family" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://substrate.burnham.org/" + "@id": "http://www.bioguo.org/AnimalTFDB/family_index.php" }, - "https://bioregistry.io/schema/#0000005": "1915", - "https://bioregistry.io/schema/#0000006": "http://substrate.burnham.org/protein/annotation/$1/html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "CUT", + "https://bioregistry.io/schema/#0000006": "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pmap.substratedb:", + "https://bioregistry.io/schema/#0000024": "http://www.bioguo.org/AnimalTFDB/family.php?fam=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://substrate.burnham.org/protein/annotation/1915/html" + "@id": "http://www.bioguo.org/AnimalTFDB/family.php?fam=CUT" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pmap.substratedb" + "@value": "atfdb.family" } }, { - "@id": "https://bartoc.org/en/node/449", + "@id": "https://registry.identifiers.org/registry/doid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0003-4978-0864", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lutz Fischer" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "lutz.fischer@tu-berlin.de" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.cpd", + "@id": "http://aber-owl.net/ontology/OBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_321", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://orcid.org/0000-0002-7981-8504", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sheeba Samuel" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sheeba.samuel@uni-jena.de" + "@id": "https://fairsharing.org/FAIRsharing.ddk9t9", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100011285", + "@id": "https://registry.identifiers.org/registry/degradome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.MIRNA", + "@id": "https://cropontology.org/ontology/CO_325", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/cdao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://orcid.org/0000-0002-9399-8003", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rosemary Shrestha" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/evoinfo/cdao" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://bioregistry.io/collection/0000004", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Comparative Data Analysis Ontology" + "http://purl.org/dc/elements/1.1/description": { + "@value": "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.kay31r" - }, - { - "@id": "https://www.obofoundry.org/ontology/cdao" - }, - { - "@id": "http://www.ontobee.org/ontology/CDAO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CDAO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDAO" - }, - { - "@id": "http://aber-owl.net/ontology/CDAO" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CDAO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "molecular biology" - }, - { - "@value": "phylogenetics" - }, + "http://purl.org/dc/terms/hasPart": [ { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/icd9" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/icdo" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/registry/icd10" }, { - "@value": "taxonomy" + "@id": "https://bioregistry.io/registry/icd10pcs" }, { - "@value": "evolutionary biology" + "@id": "https://bioregistry.io/registry/icd9cm" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/icd11" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/icd10cm" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/evoinfo/cdao" - }, - "https://bioregistry.io/schema/#0000005": "0000072", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CDAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/cdao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8688-6599" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CDAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CDAO_0000072" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cdao" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dashr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Classifications of Diseases" } }, { - "@id": "https://fairsharing.org/FAIRsharing.IziuCK", + "@id": "https://www.obofoundry.org/ontology/ecocore", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC", + "@id": "http://www.ontobee.org/ontology/FBbi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/myco.smeg", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.", + "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MycoBrowser smegmatis" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/myco.smeg" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG" - }, - { - "@id": "https://registry.identifiers.org/registry/myco.smeg" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "genome" - }, - { - "@value": "sequence" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://mycobrowser.epfl.ch/smegmalist.html" - }, - "https://bioregistry.io/schema/#0000005": "MSMEG_3769", - "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1", - "https://bioregistry.io/schema/#0000008": "^MSMEG\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=MSMEG_3769" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "myco.smeg" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.847069", + "@id": "https://registry.identifiers.org/registry/dlxb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://aber-owl.net/ontology/NCIT", + "@id": "https://bioregistry.io/metaregistry/biocontext/DRSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/AFO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/co_321", + "@id": "https://bioregistry.io/registry/occ", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "July 2018", + "http://purl.org/dc/terms/description": "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wheat ontology" + "@value": "OpenCitations Corpus" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_321" - }, - { - "@id": "https://cropontology.org/ontology/CO_321" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.czzmpg" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "agriculture" - }, - { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/occ" }, { - "@value": "life science" + "@id": "https://registry.identifiers.org/registry/occ" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cropontology.org/ontology/CO_321/Wheat" - }, - "https://bioregistry.io/schema/#0000005": "0000449", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_321:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://cropontology.org/ontology/CO_321/Wheat/owl" + "@id": "https://w3id.org/oc/corpus" }, + "https://bioregistry.io/schema/#0000005": "br/1", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/oc/corpus/$1", + "https://bioregistry.io/schema/#0000008": "^[a-z][a-z]/[0-9]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9399-8003" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_321:", + "https://bioregistry.io/schema/#0000024": "https://w3id.org/oc/corpus/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_321:0000449" + "@id": "https://w3id.org/oc/corpus/br/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "co_321" + "@value": "occ" } }, { - "@id": "https://registry.identifiers.org/registry/sedml.format", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.119", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://bioregistry.io/registry/uberon", + "@id": "https://bioregistry.io/registry/cp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cellular Phenotypes" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/cl" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cp" + } + }, + { + "@id": "https://bioregistry.io/registry/ovae", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/uberon" + "@id": "https://github.com/OVAE-Ontology/ovae" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Uber Anatomy Ontology" + "@value": "Ontology of Vaccine Adverse Events" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/UBERON" - }, - { - "@id": "http://www.ontobee.org/ontology/UBERON" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UBERON" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4c0b6b" - }, - { - "@id": "http://www.wikidata.org/entity/P1554" - }, - { - "@id": "https://registry.identifiers.org/registry/uberon" + "@id": "http://aber-owl.net/ontology/OVAE" }, { - "@id": "https://www.obofoundry.org/ontology/uberon" + "@id": "https://www.obofoundry.org/ontology/ovae" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON" + "@id": "http://www.ontobee.org/ontology/OVAE" }, { - "@id": "https://bioportal.bioontology.org/ontologies/UBERON" + "@id": "https://fairsharing.org/FAIRsharing.w4x6n4" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON" + "@id": "https://bioportal.bioontology.org/ontologies/OVAE" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon" + "@id": "https://bioregistry.io/metaregistry/biocontext/OVAE" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uberon" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae" } ], "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "taxonomy" - }, - { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, { "@value": "ontology" }, { - "@value": "anatomy" + "@value": "biomedical science" }, { - "@value": "life science" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://uberon.org" + "@id": "http://www.violinet.org/ovae/" }, - "https://bioregistry.io/schema/#0000005": "2005080", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/UBERON_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0000609", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OVAE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/uberon.owl" + "@id": "http://purl.obolibrary.org/obo/ovae.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/pr" - }, - { - "@id": "https://bioregistry.io/registry/chebi" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/go" - } - ], - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/ons" - }, - { - "@id": "https://bioregistry.io/registry/genepio" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/colao" - }, - { - "@id": "https://bioregistry.io/registry/cteno" - }, - { - "@id": "https://bioregistry.io/registry/poro" - }, - { - "@id": "https://bioregistry.io/registry/chiro" - }, - { - "@id": "https://bioregistry.io/registry/mfmo" - }, - { - "@id": "https://bioregistry.io/registry/zp" - }, - { - "@id": "https://bioregistry.io/registry/aism" - }, - { - "@id": "https://bioregistry.io/registry/plana" - }, - { - "@id": "https://bioregistry.io/registry/amphx" - }, - { - "@id": "https://bioregistry.io/registry/clo" - }, - { - "@id": "https://bioregistry.io/registry/ecocore" - }, - { - "@id": "https://bioregistry.io/registry/clyh" - }, - { - "@id": "https://bioregistry.io/registry/ecao" - }, - { - "@id": "https://bioregistry.io/registry/fovt" - }, - { - "@id": "https://bioregistry.io/registry/mco" - }, - { - "@id": "https://bioregistry.io/registry/go" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/ecto" - }, - { - "@id": "https://bioregistry.io/registry/lepao" - }, - { - "@id": "https://bioregistry.io/registry/maxo" - }, - { - "@id": "https://bioregistry.io/registry/hso" - }, - { - "@id": "https://bioregistry.io/registry/pcl" - }, - { - "@id": "https://bioregistry.io/registry/foodon" - } - ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6601-2165" + "@id": "https://orcid.org/0000-0001-9189-9661" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "Uber-anatomy ontology" - }, - { - "@value": "UBERON" - }, - { - "@value": "Uberon" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/UBERON_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OVAE_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/UBERON_2005080" + "@id": "http://purl.obolibrary.org/obo/OVAE_0000609" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uberon" + "@value": "ovae" } }, { - "@id": "https://bioregistry.io/registry/dashr.expression", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.reaction", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DASHR expression" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression" - }, - { - "@id": "https://registry.identifiers.org/registry/dashr.expression" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR.EXPRESSION" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0" - }, - "https://bioregistry.io/schema/#0000005": "hsa-mir-200a", - "https://bioregistry.io/schema/#0000006": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable", - "https://bioregistry.io/schema/#0000008": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dashr.expression:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#hsa-mir-200a#exprPerTissueTable" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dashr.expression" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/GSSO", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/pirsf", + "@id": "http://aber-owl.net/ontology/EMAPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/fcsfree", + "@id": "https://www.re3data.org/repository/r3d100010561", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/esldb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/description": "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Fetal Calf Serum-Free Database" + "@value": "eukaryotic Subcellular Localization database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/FCS-free" + "@id": "https://registry.bio2kg.org/resource/esldb" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://fcs-free.org" + "@id": "http://gpcr.biocomp.unibo.it/esldb" }, - "https://bioregistry.io/schema/#0000005": "240-17-488-3-4-12", - "https://bioregistry.io/schema/#0000006": "https://fcs-free.org/fcs-database?$1", + "https://bioregistry.io/schema/#0000005": "HS000015122", + "https://bioregistry.io/schema/#0000006": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://fcs-free.org/fcs-database?", + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://fcs-free.org/fcs-database?240-17-488-3-4-12" + "@id": "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=HS000015122" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fcsfree" + "@value": "esldb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB", + "@id": "https://bioportal.bioontology.org/ontologies/SIO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.identifiers.org/registry/mmdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gwascentral.marker", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.z0p37e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pato", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.re3data.org/repository/r3d100010191", + "@id": "https://registry.identifiers.org/registry/darc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/ero", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6dfe9b", + "@id": "https://registry.identifiers.org/registry/oclc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/imgt.primerdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR).", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ark", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IMGT/PRIMER-DB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/imgt.primerdb" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012535" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "dna" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://imgt.org/IMGTPrimerDB/" - }, - "https://bioregistry.io/schema/#0000005": "IPP900099", - "https://bioregistry.io/schema/#0000006": "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/imgt.primerdb:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=IPP900099&origin=view&source=PrList" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "imgt.primerdb" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/AntWeb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.record", + "@id": "https://www.obofoundry.org/ontology/resid", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/odor", + "@id": "https://fairsharing.org/FAIRsharing.d31795", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/wikigenes", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-8169-9049", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tiffany J. Callahan" + } + }, + { + "@id": "https://registry.identifiers.org/registry/refseq.gcf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOSITE.PROTEIN", + "@id": "https://registry.bio2kg.org/resource/hamap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SUPFAM", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.bfcfd0", + "@id": "http://edamontology.org/data_3952", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://www.wikidata.org/entity/P815", + "@id": "https://registry.identifiers.org/registry/ped.ensemble", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal", + "@id": "https://bioregistry.io/registry/minid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Minimal Viable Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/minid" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MINID" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fair-research.org" + }, + "https://bioregistry.io/schema/#0000005": "b97957", + "https://bioregistry.io/schema/#0000006": "https://hdl.handle.net/hdl:20.500.12582/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://hdl.handle.net/hdl:20.500.12582/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://hdl.handle.net/hdl:20.500.12582/b97957" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "minid" } }, { - "@id": "http://www.wikidata.org/entity/P663", + "@id": "https://orcid.org/0000-0002-0819-0473", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Paula Duek Roggli" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Paula.Duek@sib.swiss" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OHPI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://www.wikidata.org/entity/P8117", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.lepra", + "@id": "https://bioregistry.io/registry/isrctn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The ISRCTN registry is a primary clinical trial registry recognised by WHO and ICMJE that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Traditional Medicine Clinical Trial Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.isrctn.com/" + }, + "https://bioregistry.io/schema/#0000005": "ISRCTN10175490", + "https://bioregistry.io/schema/#0000006": "https://www.isrctn.com/$1", + "https://bioregistry.io/schema/#0000008": "^ISRCTN\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.isrctn.com/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.isrctn.com/ISRCTN10175490" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "isrctn" } }, { - "@id": "https://www.obofoundry.org/ontology/ncbitaxon", + "@id": "https://registry.bio2kg.org/resource/omim", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/hinv.protein", + "@id": "https://registry.identifiers.org/registry/kegg.compound", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/pride.project", + "@id": "https://fairsharing.org/FAIRsharing.67sssf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/Reactome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://fairsharing.org/FAIRsharing.zzgvrv", + "@id": "https://bioregistry.io/metaregistry/biocontext/SHEEPQTLDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/pathbank", + "@id": "https://bioregistry.io/registry/ena.embl", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana.", + "http://purl.org/dc/terms/description": "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PathBank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.3xwMon" + "@value": "European Nucleotide Archive" }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "plant genetics" - }, - { - "@value": "bioinformatics" - }, - { - "@value": "human genetics" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "cheminformatics" + "@id": "https://www.re3data.org/repository/r3d100010527" }, { - "@value": "cell biology" + "@id": "https://fairsharing.org/FAIRsharing.dj8nt8" }, { - "@value": "molecular microbiology" + "@id": "https://www.uniprot.org/database/DB-0022" }, { - "@value": "medical informatics" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENA" }, { - "@value": "animal genetics" + "@id": "https://registry.identifiers.org/registry/ena.embl" }, { - "@value": "transcriptomics" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL" }, { - "@value": "metabolomics" + "@id": "https://registry.bio2kg.org/resource/ena" }, { - "@value": "systems biology" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ena.embl" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "endocrinology" + "@value": "data management" }, { - "@value": "microbiology" + "@value": "bioinformatics" }, { - "@value": "biology" + "@value": "biodiversity" }, { - "@value": "molecular biology" + "@value": "metagenomics" }, { - "@value": "database management" + "@value": "functional genomics" }, { - "@value": "drug metabolism" + "@value": "transcriptomics" }, { - "@value": "genetics" + "@value": "dna" }, { - "@value": "proteomics" + "@value": "genomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pathbank.org" + "@id": "https://www.ebi.ac.uk/ena/" }, - "https://bioregistry.io/schema/#0000005": "SMP0000219", - "https://bioregistry.io/schema/#0000006": "https://pathbank.org/view/$1", - "https://bioregistry.io/schema/#0000008": "^(SMP|PW)\\d+$", + "https://bioregistry.io/schema/#0000005": "BN000065", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ena/browser/view/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]+[0-9]+(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pathbank.org/view/", + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/insdc.run" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7954-7057" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ena" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ena/browser/view/", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, "https://bioregistry.io/schema/#0000027": { - "@id": "https://pathbank.org/view/SMP0000219" + "@id": "https://www.ebi.ac.uk/ena/browser/view/BN000065" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pathbank" - } - }, - { - "@id": "http://aber-owl.net/ontology/MAT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "ena.embl" } }, { - "@id": "http://aber-owl.net/ontology/SO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ascl", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.obofoundry.org/ontology/go", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncit", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MYCOBANK", + "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tol", + "@id": "https://www.obofoundry.org/ontology/hsapdv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "http://www.ontobee.org/ontology/IAO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpscreg", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/yetfasco", + "@id": "https://www.obofoundry.org/ontology/ddpheno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/ncbigene", + "@id": "https://bioregistry.io/registry/nsrrc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.", + "http://purl.org/dc/terms/description": "Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Entrez Gene" + "@value": "National Swine Resource and Research Center" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneID" + "@value": "biomaterial manufacture" }, { - "@id": "https://registry.identifiers.org/registry/ncbigene" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/NCBIGene" + "@value": "fetus" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NCBIGene" + "@value": "fibroblast" }, { - "@id": "https://www.uniprot.org/database/DB-0118" + "@value": "cryopreservation" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.340" + "@value": "pig" }, { - "@id": "https://www.re3data.org/repository/r3d100010650" + "@value": "phenotyping" }, { - "@id": "http://www.wikidata.org/entity/P351" + "@value": "tissue" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIGene" + "@value": "genetically modified pig" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbigene" + "@value": "health monitoring" }, { - "@id": "https://registry.bio2kg.org/resource/ncbigene" + "@value": "breeding" }, { - "@id": "http://edamontology.org/data_1027" + "@value": "consulting" }, { - "@id": "https://fairsharing.org/FAIRsharing.5h3maw" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" + "@value": "genotyping" }, { - "@value": "genomics" + "@value": "live animal" }, { - "@value": "genetics" + "@value": "fetal fibroblast" }, { - "@value": "genome" + "@value": "reproduction" }, { - "@value": "dna" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/gene" + "@id": "http://www.nsrrc.missouri.edu/" }, - "https://bioregistry.io/schema/#0000005": "100010", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/gene/$1", + "https://bioregistry.io/schema/#0000005": "0005", + "https://bioregistry.io/schema/#0000006": "https://nsrrc.missouri.edu/nsrrc$1info/", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/nsrrc:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://nsrrc.missouri.edu/nsrrc0005info/" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nsrrc" + } + }, + { + "@id": "https://bioregistry.io/registry/gbif", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/gbif/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Global Biodiversity Information Facility" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "EGID" + "@id": "https://www.re3data.org/repository/r3d100000039" }, { - "@value": "EntrezGene" + "@id": "https://fairsharing.org/FAIRsharing.zv11j3" }, { - "@value": "entrez" + "@id": "http://www.wikidata.org/entity/P846" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "marine biology" }, { - "@value": "NCBIGene" + "@value": "natural science" }, { - "@value": "entrez gene/locuslink" + "@value": "taxonomy" }, { - "@value": "NCBI_GeneID" + "@value": "biodiversity" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "metagenomics" + }, + { + "@value": "natural history" } ], - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/gene/", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02meqm098" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.gbif.org/species" + }, + "https://bioregistry.io/schema/#0000005": "4238", + "https://bioregistry.io/schema/#0000006": "https://www.gbif.org/species/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6215-3617" }, + "https://bioregistry.io/schema/#0000024": "https://www.gbif.org/species/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/gene/100010" + "@id": "https://www.gbif.org/species/4238" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ncbigene" + "@value": "gbif" } }, { - "@id": "http://aber-owl.net/ontology/CMPO", + "@id": "https://orcid.org/0000-0002-1509-4981", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Matúš Kalaš" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "matus.kalas@uib.no" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0001-5084-9000", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Luana Licata" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "luana.licata@gmail.com" + "@id": "https://fairsharing.org/FAIRsharing.q053vb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100011049", + "@id": "https://bioregistry.io/metaregistry/biocontext/ARK", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.uniprot.org/database/DB-0266", + "@id": "https://fairsharing.org/FAIRsharing.847069", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/phenolexplorer", + "@id": "https://www.re3data.org/repository/r3d100010129", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/nxr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.", + "http://purl.org/dc/terms/description": "National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Phenol-Explorer" + "@value": "National Xenopus Resource" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER" - }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://registry.identifiers.org/registry/phenolexplorer" + "@value": "xenopus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer" + "@value": "laevis" }, { - "@id": "https://www.re3data.org/repository/r3d100012197" + "@value": "tropicalis" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.phenol-explorer.eu/foods/" + "@id": "http://www.mbl.edu/xenopus/" }, - "https://bioregistry.io/schema/#0000005": "75", - "https://bioregistry.io/schema/#0000006": "http://phenol-explorer.eu/foods/$1", + "https://bioregistry.io/schema/#0000005": "0024", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:NXR_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://phenol-explorer.eu/foods/", + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:NXR_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://phenol-explorer.eu/foods/75" + "@id": "https://scicrunch.org/resolver/RRID:NXR_0024" }, "https://bioregistry.io/schema/#0000029": { - "@value": "phenolexplorer" + "@value": "nxr" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eco", + "@id": "https://bioregistry.io/registry/imanis", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Imanis Life Sciences cell line products" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Imanis" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.imanislife.com/collections/cell-lines/" + }, + "https://bioregistry.io/schema/#0000005": "CL070", + "https://bioregistry.io/schema/#0000006": "https://www.imanislife.com/?s=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.imanislife.com/?s=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.imanislife.com/?s=CL070" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "imanis" } }, { - "@id": "https://registry.bio2kg.org/resource/edam", + "@id": "https://orcid.org/0000-0002-5640-5491", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Matt Yoder" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "diapriid@gmail.com" + }, + { + "@value": "mjyoder@illinois.edu" + } + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umbbd.pathway", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-7509-4801", - "http://purl.org/dc/terms/contributor": [ - { - "@id": "https://bioregistry.io/registry/nlx.res" - }, - { - "@id": "https://bioregistry.io/registry/nlx.br" - }, - { - "@id": "https://bioregistry.io/registry/nlx.inv" - }, - { - "@id": "https://bioregistry.io/registry/nif.std" - }, - { - "@id": "https://bioregistry.io/registry/nlx.mol" - }, - { - "@id": "https://bioregistry.io/registry/nlx.cell" - }, - { - "@id": "https://bioregistry.io/registry/nif.ext" - }, - { - "@id": "https://bioregistry.io/registry/nlx.org" - }, - { - "@id": "https://bioregistry.io/registry/nlx.func" - }, - { - "@id": "https://bioregistry.io/registry/nlx.oen" - }, - { - "@id": "https://bioregistry.io/registry/nlx.sub" - }, - { - "@id": "https://bioregistry.io/registry/nlx.chem" - }, - { - "@id": "https://bioregistry.io/registry/nlx.qual" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tom Gillespie" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "tgbugs@gmail.com" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.cell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/corum", + "@id": "https://bioregistry.io/registry/miaa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Comprehensive Resource of Mammalian protein complexes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/corum" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM" - }, - { - "@id": "https://www.uniprot.org/database/DB-0224" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM" - }, - { - "@id": "https://registry.bio2kg.org/resource/corum" - }, - { - "@id": "https://registry.identifiers.org/registry/corum" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ohbpNw" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" - }, - { - "@value": "biology" - }, - { - "@value": "bioinformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mips.helmholtz-muenchen.de/genre/proj/corum/" - }, - "https://bioregistry.io/schema/#0000005": "100", - "https://bioregistry.io/schema/#0000006": "https://mips.helmholtz-muenchen.de/corum/?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1705-3515" - }, - "https://bioregistry.io/schema/#0000024": "https://mips.helmholtz-muenchen.de/corum/?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mips.helmholtz-muenchen.de/corum/?id=100" + "@value": "Minimal Information About Anatomy ontology" }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "corum" + "@value": "miaa" } }, { - "@id": "https://bioregistry.io/registry/spdx", + "@id": "https://www.re3data.org/repository/r3d100012388", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/ygob", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.", + "http://purl.org/dc/terms/description": "YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Software Package Data Exchange License" + "@value": "Yeast Genome Order Browser" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/ygob" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx" + "@value": "gene" }, { - "@id": "https://registry.identifiers.org/registry/spdx" + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://spdx.org/licenses" + "@id": "http://wolfe.gen.tcd.ie/ygob" }, - "https://bioregistry.io/schema/#0000005": "CC-BY-1.0", - "https://bioregistry.io/schema/#0000006": "https://spdx.org/licenses/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9A-Za-z\\-.]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://spdx.org/licenses/", + "https://bioregistry.io/schema/#0000005": "ADH1", + "https://bioregistry.io/schema/#0000006": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/hgnc.symbol" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://spdx.org/licenses/CC-BY-1.0" + "@id": "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=ADH1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "spdx" - } - }, - { - "@id": "http://www.ontobee.org/ontology/MIRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "ygob" } }, { - "@id": "https://registry.bio2kg.org/resource/cmd", + "@id": "https://registry.bio2kg.org/resource/teddy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/icdc", + "@id": "https://bioregistry.io/registry/csa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.", + "http://purl.org/dc/terms/description": "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Canine Data Commons" + "@value": "Catalytic Site Atlas" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.d95034" + "@id": "https://registry.bio2kg.org/resource/csa" }, { - "@id": "https://registry.identifiers.org/registry/icdc" + "@id": "https://bioregistry.io/metaregistry/biocontext/CSA" }, { - "@id": "https://www.re3data.org/repository/r3d100010405" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "meteorology" + "@id": "https://registry.identifiers.org/registry/csa" }, { - "@value": "earth science" + "@id": "https://fairsharing.org/FAIRsharing.2ajtcf" }, { - "@value": "social science" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "oceanography" + "@value": "structure" }, { - "@value": "atmospheric science" + "@value": "enzyme" }, { - "@value": "remote sensing" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://caninecommons.cancer.gov/#/" + "@id": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/" }, - "https://bioregistry.io/schema/#0000005": "000009", - "https://bioregistry.io/schema/#0000006": "https://caninecommons.cancer.gov/#/study/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000005": "1a05", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7815-151X" + "@id": "https://orcid.org/0000-0002-7532-1269" }, - "https://bioregistry.io/schema/#0000024": "https://caninecommons.cancer.gov/#/study/", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://caninecommons.cancer.gov/#/study/000009" + "@id": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=1a05" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icdc" + "@value": "csa" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink", + "@id": "https://bioregistry.io/registry/virgen", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VirGen" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/virgen" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bioinfo.ernet.in/virgen/virgen.html" + }, + "https://bioregistry.io/schema/#0000005": "AY321118", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "virgen" } }, { - "@id": "https://registry.identifiers.org/registry/rism", + "@id": "https://fairsharing.org/FAIRsharing.2m4ms9", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gmd.profile", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2", + "@id": "https://bioregistry.io/metaregistry/biocontext/WORMS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dt9z89", + "@id": "https://bioregistry.io/metaregistry/biocontext/idot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro", + "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/mmo", + "@id": "https://bioregistry.io/registry/t3db", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A representation of the variety of methods used to make clinical and phenotype measurements.", + "http://purl.org/dc/terms/description": "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Measurement method ontology" + "@value": "Toxin and Toxin Target Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.obofoundry.org/ontology/mmo" + "@id": "https://registry.identifiers.org/registry/t3db" }, { - "@id": "http://aber-owl.net/ontology/MMO" + "@id": "https://www.re3data.org/repository/r3d100012189" }, { - "@id": "http://www.ontobee.org/ontology/MMO" + "@id": "http://edamontology.org/data_2662" }, { - "@id": "https://fairsharing.org/FAIRsharing.bgkyd7" + "@id": "https://registry.bio2kg.org/resource/t3db" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/T3DB" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MMO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMO" + "@id": "https://fairsharing.org/FAIRsharing.psn0h2" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "preclinical studies" - }, - { - "@value": "obo" + "@value": "biomedical science" }, { - "@value": "ontology" + "@value": "molecule" }, { - "@value": "biomedical science" + "@value": "life science" }, { - "@value": "life science" + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000" - }, - "https://bioregistry.io/schema/#0000005": "0000574", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MMO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mmo.owl" + "@id": "http://www.t3db.org/" }, + "https://bioregistry.io/schema/#0000005": "T3D0001", + "https://bioregistry.io/schema/#0000006": "http://www.t3db.org/toxins/$1", + "https://bioregistry.io/schema/#0000008": "^T3D\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6443-9376" + "@id": "https://orcid.org/0000-0002-3207-2434" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MMO_", + "https://bioregistry.io/schema/#0000024": "http://www.t3db.org/toxins/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MMO_0000574" + "@id": "http://www.t3db.org/toxins/T3D0001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "mmo" + "@value": "t3db" } }, { - "@id": "https://registry.identifiers.org/registry/gpcrdb", + "@id": "https://registry.identifiers.org/registry/mgnify.samp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c26a4e", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SNOMEDCT", + "@id": "https://registry.bio2kg.org/resource/pfam", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/LOINC", + "@id": "https://fairsharing.org/FAIRsharing.beb855", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/XCO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NBRC", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/issn", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "http://edamontology.org/data_2651", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/macie", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0003-4110-0748", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Inge Jonassen" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "Inge.Jonassen@uib.no" + "@id": "http://www.wikidata.org/entity/P3519", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bartoc.org/en/node/18206", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dommino", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.wikidata.org/entity/P11949", + "@id": "http://www.wikidata.org/entity/P563", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/civic.aid", + "@id": "https://bioregistry.io/registry/modeldb.concept", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/civic" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CIViC Assertion" + "@value": "ModelDB concept" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/civic.aid" + "@id": "https://registry.identifiers.org/registry/modeldb.concept" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://civicdb.org/" + "@id": "https://www.yale.edu" }, - "https://bioregistry.io/schema/#0000005": "3", - "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/assertions/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000005": "3639", + "https://bioregistry.io/schema/#0000006": "https://senselab.med.yale.edu/ModelDB/ModelList?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/assertions/", + "https://bioregistry.io/schema/#0000024": "https://senselab.med.yale.edu/ModelDB/ModelList?id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://civicdb.org/links/assertions/3" + "@id": "https://senselab.med.yale.edu/ModelDB/ModelList?id=3639" }, "https://bioregistry.io/schema/#0000029": { - "@value": "civic.aid" + "@value": "modeldb.concept" } }, { - "@id": "https://bioregistry.io/registry/ctri", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The mission of the Clinical Trials Registry-India (CTRI) is to ensure that all clinical trials conducted in India are prospectively registered, i.e. before the enrolment of the first participant. Additionally, post-marketing surveillance studies, BA/BE studies as well as clinical studies as part of PG thesis are also expected to be registered in the CTRI. (from homepage)\n\nNote that the identifier in this semantic space is not the one used in the webpages", + "@id": "https://registry.identifiers.org/registry/aftol.taxonomy", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "India Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ctri.nic.in" - }, - "https://bioregistry.io/schema/#0000005": "CTRI/2023/04/052053", - "https://bioregistry.io/schema/#0000008": "^CTRI/\\d{4}/\\d{2}/\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "ctri" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/geneloc", + "@id": "https://bioregistry.io/metaregistry/biocontext/PMDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UBERON", + "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/P3DB.SITE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-4532-2703", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Petra Fey" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pfey@northwestern.edu" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.substratedb", + "@id": "http://aber-owl.net/ontology/RXNO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/ENM", + "@id": "https://bioregistry.io/registry/pubchem.element", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/pubchem" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PubChem Element" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "chemistry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/periodic-table" + }, + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://pubchem.ncbi.nlm.nih.gov/element/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://pubchem.ncbi.nlm.nih.gov/element/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pubchem.ncbi.nlm.nih.gov/element/1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pubchem.element" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICEO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.na5xp", + "@id": "https://fairsharing.org/FAIRsharing.USxx0K", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/flymine.chromosome", + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/registry/gold.genome", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge.", + "http://purl.org/dc/terms/description": "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FlyMine Chromosome Band" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/flymine" + "@value": "GOLD genome" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "genome" + "@id": "https://bioregistry.io/metaregistry/biocontext/GOLD.GENOME" }, { - "@value": "gene expression" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.genome" }, { - "@value": "protein" + "@id": "https://registry.identifiers.org/registry/gold.genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.flymine.org/" + "@id": "http://www.genomesonline.org/cgi-bin/GOLD/index.cgi" + }, + "https://bioregistry.io/schema/#0000005": "Gi07796", + "https://bioregistry.io/schema/#0000006": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1", + "https://bioregistry.io/schema/#0000008": "^(Gi|Gc)\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=Gi07796" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gold.genome" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EGA.DATASET", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/cemo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/NuriaQueralt/covid19-epidemiology-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The COVID-19 epidemiology and monitoring ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/NuriaQueralt/covid19-epidemiology-ontology" + }, + "https://bioregistry.io/schema/#0000005": "secondary_attack_rate", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/cemo/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-z_-]+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/NuriaQueralt/covid19-epidemiology-ontology/main/owl/cemo.owl" }, - "https://bioregistry.io/schema/#0000005": "1047874", - "https://bioregistry.io/schema/#0000006": "https://www.flymine.org/flymine/report/ChromosomeBand/$1", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0169-8159" + }, "https://bioregistry.io/schema/#0000021": { "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://www.flymine.org/flymine/report/ChromosomeBand/", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/cemo/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.flymine.org/flymine/report/ChromosomeBand/1047874" + "@id": "https://biopragmatics.github.io/providers/cemo/secondary_attack_rate" }, "https://bioregistry.io/schema/#0000029": { - "@value": "flymine.chromosome" + "@value": "cemo" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly", + "@id": "https://bioregistry.io/metaregistry/biocontext/HAO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/nucleotide", + "@id": "https://registry.identifiers.org/registry/conoserver", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/SIREN", + "@id": "https://www.obofoundry.org/ontology/fbbt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/pw", + "@id": "https://bioregistry.io/registry/lincs.data", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.", + "http://purl.org/dc/terms/description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rat-genome-database/PW-Pathway-Ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pathway ontology" + "@value": "LINCS Data" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.f73xhd" - }, - { - "@id": "https://www.obofoundry.org/ontology/pw" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw" - }, - { - "@id": "https://registry.identifiers.org/registry/pw" - }, - { - "@id": "http://aber-owl.net/ontology/PW" + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.DATA" }, { - "@id": "https://bioportal.bioontology.org/ontologies/PW" + "@id": "https://registry.identifiers.org/registry/lincs.data" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PW" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.data" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://lincsportal.ccs.miami.edu/datasets/" + }, + "https://bioregistry.io/schema/#0000005": "LDS-1110", + "https://bioregistry.io/schema/#0000006": "http://lincsportal.ccs.miami.edu/datasets/#/view/$1", + "https://bioregistry.io/schema/#0000008": "^[EL]D[SG]-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://lincsportal.ccs.miami.edu/datasets/#/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://lincsportal.ccs.miami.edu/datasets/#/view/LDS-1110" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lincs.data" + } + }, + { + "@id": "https://bioregistry.io/registry/radlex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RSNA Informatics RadLex" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/pw" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256" }, { - "@id": "http://www.wikidata.org/entity/P7333" + "@id": "https://fairsharing.org/FAIRsharing.shm2f2" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw" + "@id": "http://aber-owl.net/ontology/RADLEX" }, { - "@id": "http://www.ontobee.org/ontology/PW" + "@id": "https://bioportal.bioontology.org/ontologies/RADLEX" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "human" + "@value": "biomedical science" }, { - "@value": "ontology" + "@value": "clinical studies" }, { - "@value": "pathway" + "@value": "anatomy" }, { - "@value": "drug metabolism" + "@value": "radiology" }, { - "@value": "life science" + "@value": "medical informatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/rgdweb/ontology/search.html" + "@id": "https://radlex.org" }, - "https://bioregistry.io/schema/#0000005": "0000423", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PW_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "RID1", + "https://bioregistry.io/schema/#0000006": "https://radlex.org/RID/$1", + "https://bioregistry.io/schema/#0000008": "^RID\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/pw.owl" + "@id": "http://aber-owl.net/media/ontologies/RADLEX/37/radlex.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9553-7227" + "@id": "_:Na482dcd018c24879b9da354f861d92d8" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PW_", + "https://bioregistry.io/schema/#0000024": "https://radlex.org/RID/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/PW_0000423" + "@id": "https://radlex.org/RID/RID1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pw" + "@value": "radlex" } }, { - "@id": "https://registry.bio2kg.org/resource/cgsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "_:Na482dcd018c24879b9da354f861d92d8", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Radiological Society of North America" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "radlex-feedback@lists.rsna.org" } }, { - "@id": "https://fairsharing.org/FAIRsharing.65tdnz", + "@id": "https://fairsharing.org/FAIRsharing.530e61", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } @@ -136583,11702 +129946,18494 @@ } }, { - "@id": "https://orcid.org/0000-0002-1048-5019", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Matthew Brush" - }, - "http://xmlns.com/foaf/0.1/mbox": [ - { - "@value": "matt@tislab.org" - }, - { - "@value": "mhb120@gmail.com" - } - ] - }, - { - "@id": "https://cropontology.org/ontology/CO_335", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/viperdb", + "@id": "https://bioregistry.io/registry/sweetrealm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.", + "http://purl.org/dc/terms/description": "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VIPERdb" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Semantic Web for Earth and Environment Technology Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioportal.bioontology.org/ontologies/SWEET" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/viperdb" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012362" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "small molecule" - }, - { - "@value": "structure" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://viperdb.scripps.edu/" + "@id": "https://bioportal.bioontology.org/ontologies/SWEET" }, - "https://bioregistry.io/schema/#0000005": "2c6s", - "https://bioregistry.io/schema/#0000006": "https://viperdb.org/Info_Page.php?VDB=$1", - "https://bioregistry.io/schema/#0000011": { - "@id": "https://bioregistry.io/registry/pdb" + "https://bioregistry.io/schema/#0000005": "ANOVA", + "https://bioregistry.io/schema/#0000006": "http://sweetontology.net/matrMineral/$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/EnvironmentOntology/envo/master/src/envo/sources/sweetrealm.obo" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://viperdb.org/Info_Page.php?VDB=", + "https://bioregistry.io/schema/#0000024": "http://sweetontology.net/matrMineral/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://viperdb.org/Info_Page.php?VDB=2c6s" + "@id": "http://sweetontology.net/matrMineral/ANOVA" }, "https://bioregistry.io/schema/#0000029": { - "@value": "viperdb" + "@value": "sweetrealm" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CMPO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/ised", + "@id": "https://registry.bio2kg.org/resource/sitex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://orcid.org/0000-0001-6787-2901", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Suzi Aleksander" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "suzia@stanford.edu" - } - }, - { - "@id": "http://aber-owl.net/ontology/MOP", + "@id": "https://registry.bio2kg.org/resource/flybase.est", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.bio2kg.org/resource/rnajunction", + "@id": "https://fairsharing.org/FAIRsharing.aa0eat", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/orthodb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/gaz", + "@id": "https://bioregistry.io/registry/fbbi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A gazetteer constructed on ontological principles. The countries are actively maintained.", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EnvironmentOntology/gaz" + "@id": "https://github.com/CRBS/Biological_Imaging_Methods_Ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gazetteer" + "@value": "Biological Imaging Methods Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/GAZ" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GAZ" + "@id": "https://www.obofoundry.org/ontology/fbbi" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GAZ" + "@id": "https://bioportal.bioontology.org/ontologies/FBbi" }, { - "@id": "http://www.wikidata.org/entity/P6778" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi" }, { - "@id": "https://www.obofoundry.org/ontology/gaz" + "@id": "https://registry.bio2kg.org/resource/fbbi" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz" + "@id": "https://fairsharing.org/FAIRsharing.ny3z9j" }, { - "@id": "http://aber-owl.net/ontology/GAZ" + "@id": "http://aber-owl.net/ontology/FBbi" }, { - "@id": "https://fairsharing.org/FAIRsharing.wkdjpb" + "@id": "http://www.ontobee.org/ontology/FBbi" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "biomedical science" }, { "@value": "ontology" }, { - "@value": "environmental science" + "@value": "life science" + }, + { + "@value": "imaging" + }, + { + "@value": "obo" + }, + { + "@value": "experiment" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://environmentontology.github.io/gaz/" + "@id": "http://cellimagelibrary.org/" }, - "https://bioregistry.io/schema/#0000005": "00620027", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GAZ_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "00000268", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBbi_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/gaz.owl" + "@id": "http://purl.obolibrary.org/obo/fbbi.owl" }, "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/scdo" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8910-9851" + "@id": "https://orcid.org/0000-0002-8841-5870" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GAZ_", + "https://bioregistry.io/schema/#0000023": { + "@value": "FBbi" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBbi_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GAZ_00620027" + "@id": "http://purl.obolibrary.org/obo/FBbi_00000268" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gaz" + "@value": "fbbi" } }, { - "@id": "https://bioregistry.io/registry/rgd.strain", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://orcid.org/0000-0001-9202-5309", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chen Yang" }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "chenyangnutrition@gmail.com" + } + }, + { + "@id": "https://orcid.org/0000-0002-0831-6427", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rat Genome Database strain" + "@value": "Karen Eilbeck" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN" - }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "keilbeck@genetics.utah.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/frbrer", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rgd.strain" + "@id": "https://bioregistry.io/registry/frbr" }, { - "@id": "https://registry.identifiers.org/registry/rgd.strain" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Functional Requirements for Bibliographic Records Entity-Relationship Model" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://rgd.mcw.edu/" + "@id": "https://www.iflastandards.info/fr/frbr/frbrer" }, - "https://bioregistry.io/schema/#0000005": "5688061", - "https://bioregistry.io/schema/#0000006": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "1001", + "https://bioregistry.io/schema/#0000006": "http://iflastandards.info/ns/fr/frbr/frbrer/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=", + "https://bioregistry.io/schema/#0000024": "http://iflastandards.info/ns/fr/frbr/frbrer/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=5688061" + "@id": "http://iflastandards.info/ns/fr/frbr/frbrer/1001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "rgd.strain" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0030", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pgs", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/orphanet", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/t3db", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://aber-owl.net/ontology/FYPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.QTL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubMed", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gold.meta", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_325", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://registry.identifiers.org/registry/pato", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OVAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/vbrc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "frbrer" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC", + "@id": "https://www.obofoundry.org/ontology/cheminf", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/dbg2introns", + "@id": "https://fairsharing.org/FAIRsharing.af7a2d", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0001-9052-2854", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Kim Durante" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "kdurante@stanford.edu" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/clao", + "@id": "https://bioregistry.io/registry/pgdso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/luis-gonzalez-m/Collembola" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Collembola Anatomy Ontology" + "@value": "Plant Growth and Development Stage" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/CLAO" - }, - { - "@id": "http://www.ontobee.org/ontology/CLAO" - }, - { - "@id": "https://www.obofoundry.org/ontology/clao" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao" + "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO" }, { - "@id": "http://aber-owl.net/ontology/CLAO" + "@id": "https://www.obofoundry.org/ontology/pgdso" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/luis-gonzalez-m/Collembola" - }, - "https://bioregistry.io/schema/#0000005": "0000088", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CLAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/clao.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/ro" + "@id": "http://www.plantontology.org" }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PGDSO_$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9136-9932" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CLAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CLAO_0000088" + "@id": "_:N1531bf92c67e42119f18e5fedbef62f9" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PGDSO_", "https://bioregistry.io/schema/#0000029": { - "@value": "clao" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ato", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@value": "pgdso" } }, { - "@id": "https://orcid.org/0000-0002-7805-0660", + "@id": "_:N1531bf92c67e42119f18e5fedbef62f9", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lorenz Reimer" + "@value": "Plant Ontology Administrators" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "contact@bacdive.de" + "@value": "po-discuss@plantontology.org" } }, { - "@id": "https://registry.bio2kg.org/resource/viroligo", + "@id": "https://bioregistry.io/metaregistry/biocontext/TGD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." - }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/co_341" - }, - { - "@id": "https://bioregistry.io/registry/civic.vid" - }, - { - "@id": "https://bioregistry.io/registry/drugcentral" - }, - { - "@id": "https://bioregistry.io/registry/paxdb.protein" - }, - { - "@id": "https://bioregistry.io/registry/cadsr" - }, - { - "@id": "https://bioregistry.io/registry/otol" - }, - { - "@id": "https://bioregistry.io/registry/caps" - }, - { - "@id": "https://bioregistry.io/registry/ddpheno" - }, - { - "@id": "https://bioregistry.io/registry/gecko" - }, - { - "@id": "https://bioregistry.io/registry/dsmz" - }, - { - "@id": "https://bioregistry.io/registry/supfam" - }, - { - "@id": "https://bioregistry.io/registry/bold.taxonomy" - }, - { - "@id": "https://bioregistry.io/registry/cazy" - }, - { - "@id": "https://bioregistry.io/registry/cto" - }, - { - "@id": "https://bioregistry.io/registry/bartoc" - }, - { - "@id": "https://bioregistry.io/registry/uniprot.disease" - }, - { - "@id": "https://bioregistry.io/registry/seo" - }, - { - "@id": "https://bioregistry.io/registry/umbbd.reaction" - }, - { - "@id": "https://bioregistry.io/registry/yetfasco" - }, - { - "@id": "https://bioregistry.io/registry/zfa" - }, - { - "@id": "https://bioregistry.io/registry/hms.lincs.dataset" - }, - { - "@id": "https://bioregistry.io/registry/rrrc" - }, - { - "@id": "https://bioregistry.io/registry/rhea" - }, - { - "@id": "https://bioregistry.io/registry/rnamod" - }, - { - "@id": "https://bioregistry.io/registry/noaa.cameo" - }, - { - "@id": "https://bioregistry.io/registry/rcb" - }, - { - "@id": "https://bioregistry.io/registry/bigg.compartment" - }, - { - "@id": "https://bioregistry.io/registry/biocyc" - }, - { - "@id": "https://bioregistry.io/registry/hssp" - }, - { - "@id": "https://bioregistry.io/registry/ega.study" - }, - { - "@id": "https://bioregistry.io/registry/iobc" - }, - { - "@id": "https://bioregistry.io/registry/cghdb" - }, - { - "@id": "https://bioregistry.io/registry/modeldb.concept" - }, - { - "@id": "https://bioregistry.io/registry/ontoavida" - }, - { - "@id": "https://bioregistry.io/registry/p3db.protein" - }, - { - "@id": "https://bioregistry.io/registry/rna_sstrand" - }, - { - "@id": "https://bioregistry.io/registry/nrfc" - }, - { - "@id": "https://bioregistry.io/registry/ucum" - }, - { - "@id": "https://bioregistry.io/registry/biofactoid" - }, - { - "@id": "https://bioregistry.io/registry/co_325" - }, - { - "@id": "https://bioregistry.io/registry/bpdb" - }, - { - "@id": "https://bioregistry.io/registry/homd.taxon" - }, - { - "@id": "https://bioregistry.io/registry/charprot" - }, - { - "@id": "https://bioregistry.io/registry/cellosaurus" - }, - { - "@id": "https://bioregistry.io/registry/hinv.transcript" - }, - { - "@id": "https://bioregistry.io/registry/pass2" - }, - { - "@id": "https://bioregistry.io/registry/rnaloops" - }, - { - "@id": "https://bioregistry.io/registry/atc" - }, - { - "@id": "https://bioregistry.io/registry/oma.hog" - }, - { - "@id": "https://bioregistry.io/registry/loqate" - }, - { - "@id": "https://bioregistry.io/registry/encode" - }, - { - "@id": "https://bioregistry.io/registry/crisprdb" - }, - { - "@id": "https://bioregistry.io/registry/hamap" - }, - { - "@id": "https://bioregistry.io/registry/eu89h" - }, - { - "@id": "https://bioregistry.io/registry/pmp" - }, - { - "@id": "https://bioregistry.io/registry/chictr" - }, - { - "@id": "https://bioregistry.io/registry/ev" - }, - { - "@id": "https://bioregistry.io/registry/aop" - }, - { - "@id": "https://bioregistry.io/registry/co_326" - }, - { - "@id": "https://bioregistry.io/registry/nembase" - }, - { - "@id": "https://bioregistry.io/registry/sgd" - }, - { - "@id": "https://bioregistry.io/registry/bigg.model" - }, - { - "@id": "https://bioregistry.io/registry/pibase" - }, - { - "@id": "https://bioregistry.io/registry/drugbank.bioentity" - }, - { - "@id": "https://bioregistry.io/registry/hba" - }, - { - "@id": "https://bioregistry.io/registry/mirnao" - }, - { - "@id": "https://bioregistry.io/registry/gxa.gene" - }, - { - "@id": "https://bioregistry.io/registry/hovergen" - }, - { - "@id": "https://bioregistry.io/registry/agrovoc" - }, - { - "@id": "https://bioregistry.io/registry/disprot" - }, - { - "@id": "https://bioregistry.io/registry/chickenqtldb" - }, - { - "@id": "https://bioregistry.io/registry/afo" - }, - { - "@id": "https://bioregistry.io/registry/rgap" - }, - { - "@id": "https://bioregistry.io/registry/easychair.cfp" - }, - { - "@id": "https://bioregistry.io/registry/icdo" - }, - { - "@id": "https://bioregistry.io/registry/slctr" - }, - { - "@id": "https://bioregistry.io/registry/adcad" - }, - { - "@id": "https://bioregistry.io/registry/cdt" - }, - { - "@id": "https://bioregistry.io/registry/wgs84" - }, - { - "@id": "https://bioregistry.io/registry/mmsl" - }, - { - "@id": "https://bioregistry.io/registry/agro" - }, - { - "@id": "https://bioregistry.io/registry/alzgene" - }, - { - "@id": "https://bioregistry.io/registry/hprd" - }, - { - "@id": "https://bioregistry.io/registry/nlx.anat" - }, - { - "@id": "https://bioregistry.io/registry/vectorbase" - }, - { - "@id": "https://bioregistry.io/registry/oryzabase.reference" - }, - { - "@id": "https://bioregistry.io/registry/issn" - }, - { - "@id": "https://bioregistry.io/registry/pdb" - }, - { - "@id": "https://bioregistry.io/registry/autdb" - }, - { - "@id": "https://bioregistry.io/registry/jaxmice" - }, - { - "@id": "https://bioregistry.io/registry/proteomicsdb.protein" - }, - { - "@id": "https://bioregistry.io/registry/ocid" - }, - { - "@id": "https://bioregistry.io/registry/datanator.metabolite" - }, - { - "@id": "https://bioregistry.io/registry/insdc.sra" - }, - { - "@id": "https://bioregistry.io/registry/irefweb" - }, - { - "@id": "https://bioregistry.io/registry/tcb" - }, - { - "@id": "https://bioregistry.io/registry/apo" - }, - { - "@id": "https://bioregistry.io/registry/rnavdb" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/dermo" - }, - { - "@id": "https://bioregistry.io/registry/dg.4dfc" - }, - { - "@id": "https://bioregistry.io/registry/schema" - }, - { - "@id": "https://bioregistry.io/registry/araport" - }, - { - "@id": "https://bioregistry.io/registry/pseudogene" - }, - { - "@id": "https://bioregistry.io/registry/kegg.metagenome" - }, - { - "@id": "https://bioregistry.io/registry/scpd" - }, - { - "@id": "https://bioregistry.io/registry/kegg.orthology" - }, - { - "@id": "https://bioregistry.io/registry/eropmoscow" - }, - { - "@id": "https://bioregistry.io/registry/co_350" - }, - { - "@id": "https://bioregistry.io/registry/goldbook" - }, - { - "@id": "https://bioregistry.io/registry/epio" - }, - { - "@id": "https://bioregistry.io/registry/ecto" - }, - { - "@id": "https://bioregistry.io/registry/te" - }, - { - "@id": "https://bioregistry.io/registry/sael" - }, - { - "@id": "https://bioregistry.io/registry/gabi" - }, - { - "@id": "https://bioregistry.io/registry/bila" - }, - { - "@id": "https://bioregistry.io/registry/world2dpage" - }, - { - "@id": "https://bioregistry.io/registry/gro" - }, - { - "@id": "https://bioregistry.io/registry/pathoplant" - }, - { - "@id": "https://bioregistry.io/registry/edam.data" - }, - { - "@id": "https://bioregistry.io/registry/chemdb" - }, - { - "@id": "https://bioregistry.io/registry/codelink" - }, - { - "@id": "https://bioregistry.io/registry/worfdb" - }, - { - "@id": "https://bioregistry.io/registry/casspc" - }, - { - "@id": "https://bioregistry.io/registry/drsanv0" - }, - { - "@id": "https://bioregistry.io/registry/subtiwiki" - }, - { - "@id": "https://bioregistry.io/registry/abcam" - }, - { - "@id": "https://bioregistry.io/registry/gmd" - }, - { - "@id": "https://bioregistry.io/registry/hcvdb" - }, - { - "@id": "https://bioregistry.io/registry/doco" - }, - { - "@id": "https://bioregistry.io/registry/vso" - }, - { - "@id": "https://bioregistry.io/registry/publons.publication" - }, - { - "@id": "https://bioregistry.io/registry/myco.smeg" - }, - { - "@id": "https://bioregistry.io/registry/biozil" - }, - { - "@id": "https://bioregistry.io/registry/d1id" - }, - { - "@id": "https://bioregistry.io/registry/pypi" - }, - { - "@id": "https://bioregistry.io/registry/chmo" - }, - { - "@id": "https://bioregistry.io/registry/rebase" - }, - { - "@id": "https://bioregistry.io/registry/gear" - }, - { - "@id": "https://bioregistry.io/registry/sitex" - }, - { - "@id": "https://bioregistry.io/registry/medgen" - }, - { - "@id": "https://bioregistry.io/registry/discoverx" - }, - { - "@id": "https://bioregistry.io/registry/uniprot.tissue" - }, - { - "@id": "https://bioregistry.io/registry/easychair.topic" - }, - { - "@id": "https://bioregistry.io/registry/dicom" - }, - { - "@id": "https://bioregistry.io/registry/co_336" - }, - { - "@id": "https://bioregistry.io/registry/snp500cancer" - }, - { - "@id": "https://bioregistry.io/registry/kegg.genes" - }, - { - "@id": "https://bioregistry.io/registry/wikidata" - }, - { - "@id": "https://bioregistry.io/registry/doi" - }, - { - "@id": "https://bioregistry.io/registry/pathguide" - }, - { - "@id": "https://bioregistry.io/registry/gno" - }, - { - "@id": "https://bioregistry.io/registry/uniprot.arba" - }, - { - "@id": "https://bioregistry.io/registry/multicellds.snapshot" - }, - { - "@id": "https://bioregistry.io/registry/rnao" - }, - { - "@id": "https://bioregistry.io/registry/bmrb.restraint" - }, - { - "@id": "https://bioregistry.io/registry/co_339" - }, - { - "@id": "https://bioregistry.io/registry/rxno" - }, - { - "@id": "https://bioregistry.io/registry/disprot.region" - }, - { - "@id": "https://bioregistry.io/registry/ehdaa" - }, - { - "@id": "https://bioregistry.io/registry/debio" - }, - { - "@id": "https://bioregistry.io/registry/protclustdb" - }, - { - "@id": "https://bioregistry.io/registry/skip" - }, - { - "@id": "https://bioregistry.io/registry/mmp.fun" - }, - { - "@id": "https://bioregistry.io/registry/ucas" - }, - { - "@id": "https://bioregistry.io/registry/bto" - }, - { - "@id": "https://bioregistry.io/registry/drugbank.reaction" - }, - { - "@id": "https://bioregistry.io/registry/edam.format" - }, - { - "@id": "https://bioregistry.io/registry/phosphopoint.protein" - }, - { - "@id": "https://bioregistry.io/registry/isfinder" - }, - { - "@id": "https://bioregistry.io/registry/github.issue" - }, - { - "@id": "https://bioregistry.io/registry/ncbigi" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.substance" - }, - { - "@id": "https://bioregistry.io/registry/ligandbook" - }, - { - "@id": "https://bioregistry.io/registry/vmhreaction" - }, - { - "@id": "https://bioregistry.io/registry/co_370" - }, - { - "@id": "https://bioregistry.io/registry/merops.entry" - }, - { - "@id": "https://bioregistry.io/registry/civic.aid" - }, - { - "@id": "https://bioregistry.io/registry/kegg.disease" - }, - { - "@id": "https://bioregistry.io/registry/dmba" - }, - { - "@id": "https://bioregistry.io/registry/neurovault.image" - }, - { - "@id": "https://bioregistry.io/registry/mo" - }, - { - "@id": "https://bioregistry.io/registry/inn" - }, - { - "@id": "https://bioregistry.io/registry/iro" - }, - { - "@id": "https://bioregistry.io/registry/proco" - }, - { - "@id": "https://bioregistry.io/registry/gramene.qtl" - }, - { - "@id": "https://bioregistry.io/registry/ensembl.metazoa" - }, - { - "@id": "https://bioregistry.io/registry/nif.dysfunction" - }, - { - "@id": "https://bioregistry.io/registry/pesticides" - }, - { - "@id": "https://bioregistry.io/registry/senso" - }, - { - "@id": "https://bioregistry.io/registry/pubmed" - }, - { - "@id": "https://bioregistry.io/registry/tngb" - }, - { - "@id": "https://bioregistry.io/registry/biotools" - }, - { - "@id": "https://bioregistry.io/registry/eupath" - }, - { - "@id": "https://bioregistry.io/registry/polbase" - }, - { - "@id": "https://bioregistry.io/registry/nlx.func" - }, - { - "@id": "https://bioregistry.io/registry/cob" - }, - { - "@id": "https://bioregistry.io/registry/noncodev4.gene" - }, - { - "@id": "https://bioregistry.io/registry/prodom" - }, - { - "@id": "https://bioregistry.io/registry/wormpep" - }, - { - "@id": "https://bioregistry.io/registry/lrg" - }, - { - "@id": "https://bioregistry.io/registry/pina" - }, - { - "@id": "https://bioregistry.io/registry/vo" - }, - { - "@id": "https://bioregistry.io/registry/iceberg.family" - }, - { - "@id": "https://bioregistry.io/registry/icd11" - }, - { - "@id": "https://bioregistry.io/registry/ctd.gene" - }, - { - "@id": "https://bioregistry.io/registry/clinvar" - }, - { - "@id": "https://bioregistry.io/registry/scoro" - }, - { - "@id": "https://bioregistry.io/registry/srao" - }, - { - "@id": "https://bioregistry.io/registry/enzo" - }, - { - "@id": "https://bioregistry.io/registry/corum" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.cell" - }, - { - "@id": "https://bioregistry.io/registry/lter" - }, - { - "@id": "https://bioregistry.io/registry/pmdb" - }, - { - "@id": "https://bioregistry.io/registry/dbd" - }, - { - "@id": "https://bioregistry.io/registry/owl" - }, - { - "@id": "https://bioregistry.io/registry/chembl" - }, - { - "@id": "https://bioregistry.io/registry/ac" - }, + "@id": "https://registry.bio2kg.org/resource/jcm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/ndc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Drug Code" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ctd.chemical" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69" }, { - "@id": "https://bioregistry.io/registry/ligandexpo" + "@id": "https://registry.identifiers.org/registry/ndc" }, { - "@id": "https://bioregistry.io/registry/wwf.ecoregion" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ndc" }, { - "@id": "https://bioregistry.io/registry/pesticideinfo" + "@id": "https://bioregistry.io/metaregistry/biocontext/NDC" }, { - "@id": "https://bioregistry.io/registry/ndfrt" - }, + "@id": "http://www.wikidata.org/entity/P3640" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.accessdata.fda.gov/scripts/cder/ndc/" + }, + "https://bioregistry.io/schema/#0000005": "0002-1975-61", + "https://bioregistry.io/schema/#0000006": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+\\-\\d+\\-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/0002-1975-61" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ndc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/umbbd.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/planttfdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/orphanet", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Orphanet" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/go.model" + "@id": "https://registry.identifiers.org/registry/orphanet" }, { - "@id": "https://bioregistry.io/registry/bel" + "@id": "https://fairsharing.org/FAIRsharing.6bd5k6" }, { - "@id": "https://bioregistry.io/registry/genecards" + "@id": "https://bioregistry.io/metaregistry/biocontext/Orphanet" }, { - "@id": "https://bioregistry.io/registry/edda" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/orphanet" }, { - "@id": "https://bioregistry.io/registry/bido" + "@id": "https://www.uniprot.org/database/DB-0068" }, { - "@id": "https://bioregistry.io/registry/estdab" + "@id": "http://www.wikidata.org/entity/P1550" }, { - "@id": "https://bioregistry.io/registry/ega.dataset" + "@id": "https://registry.bio2kg.org/resource/orphanet" }, { - "@id": "https://bioregistry.io/registry/lepao" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/uniprot.keyword" + "@value": "ontology and terminology" }, { - "@id": "https://bioregistry.io/registry/ncats.bioplanet" + "@value": "human" }, { - "@id": "https://bioregistry.io/registry/fbsp" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/agsd" + "@value": "disease" }, { - "@id": "https://bioregistry.io/registry/ensembl.protist" - }, + "@value": "drug" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.orpha.net/consor/" + }, + "https://bioregistry.io/schema/#0000005": "85163", + "https://bioregistry.io/schema/#0000006": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "ORPHA" + }, + "https://bioregistry.io/schema/#0000024": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=85163" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "orphanet" + } + }, + { + "@id": "https://bioregistry.io/registry/storedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/cattleqtldb" + "@id": "https://bioregistry.io/registry/storedb.file" }, { - "@id": "https://bioregistry.io/registry/string" + "@id": "https://bioregistry.io/registry/storedb.dataset" }, { - "@id": "https://bioregistry.io/registry/flymine.chromosome" - }, + "@id": "https://bioregistry.io/registry/storedb.study" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Store DB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/limore" + "@id": "https://www.re3data.org/repository/r3d100011049" }, { - "@id": "https://bioregistry.io/registry/iceberg.ime" + "@id": "https://fairsharing.org/FAIRsharing.6h8d2r" }, { - "@id": "https://bioregistry.io/registry/pactr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/storedb" }, { - "@id": "https://bioregistry.io/registry/oncotree" + "@id": "https://bioregistry.io/metaregistry/biocontext/STOREDB" }, { - "@id": "https://bioregistry.io/registry/opm" - }, + "@id": "https://registry.identifiers.org/registry/storedb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/uniprot.isoform" + "@value": "epidemiology" }, { - "@id": "https://bioregistry.io/registry/voc4cat" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/lincs.cell" + "@value": "preclinical studies" }, { - "@id": "https://bioregistry.io/registry/cdao" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/drsc" - }, + "@value": "ecology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.storedb.org/" + }, + "https://bioregistry.io/schema/#0000005": "STUDY1040", + "https://bioregistry.io/schema/#0000006": "https://www.storedb.org/?$1", + "https://bioregistry.io/schema/#0000008": "^(STUDY|FILE|DATASET)\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5111-7263" + }, + "https://bioregistry.io/schema/#0000024": "https://www.storedb.org/?", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.storedb.org/?STUDY1040" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "storedb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/topfind", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/panther.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/ovae" + "@id": "https://bioregistry.io/registry/panther" }, { - "@id": "https://bioregistry.io/registry/ecmdb" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PANTHER Family" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/sabiork.reaction" + "@id": "https://registry.identifiers.org/registry/panther.family" }, { - "@id": "https://bioregistry.io/registry/hao" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PANTHER.FAMILY" }, { - "@id": "https://bioregistry.io/registry/gsso" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER" }, { - "@id": "https://bioregistry.io/registry/co_367" + "@id": "https://www.uniprot.org/database/DB-0069" }, { - "@id": "https://bioregistry.io/registry/licebase" + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.FAMILY" }, { - "@id": "https://bioregistry.io/registry/bootstrep" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family" }, { - "@id": "https://bioregistry.io/registry/bugbase.protocol" - }, + "@id": "https://registry.bio2kg.org/resource/panther" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ecyano.model" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/mw.study" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/namerxn" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/mirte" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/co_358" - }, + "@value": "pathway" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pantherdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "PTHR12345", + "https://bioregistry.io/schema/#0000006": "http://www.pantherdb.org/panther/family.do?clsAccession=$1", + "https://bioregistry.io/schema/#0000008": "^PTHR\\d{5}(\\:SF\\d{1,3})?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pantherdb.org/panther/family.do?clsAccession=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12345" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "panther.family" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.domain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/cvx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vaccine administered code set" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=cvx" + }, + "https://bioregistry.io/schema/#0000005": "54", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/cvx/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/cvx/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/cvx/54" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cvx" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "http://aber-owl.net/ontology/RADLEX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ceph", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/pid.pathway", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NCI Pathway Interaction Database: Pathway" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/t3db" + "@id": "https://registry.bio2kg.org/resource/pid" }, { - "@id": "https://bioregistry.io/registry/unimod" + "@id": "https://bioregistry.io/metaregistry/biocontext/PID.PATHWAY" }, { - "@id": "https://bioregistry.io/registry/cellbank.australia" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pid.pathway" }, { - "@id": "https://bioregistry.io/registry/macie" + "@id": "https://registry.identifiers.org/registry/pid.pathway" }, { - "@id": "https://bioregistry.io/registry/emaps" + "@id": "https://fairsharing.org/FAIRsharing.ncgh1j" }, { - "@id": "https://bioregistry.io/registry/atcc" - }, + "@id": "http://edamontology.org/data_2344" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/spike.map" + "@value": "small molecule" }, { - "@id": "https://bioregistry.io/registry/go" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/swrl" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/asin" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/mod" - }, + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://pid.nci.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "eff796f3-6195-11e5-8ac5-06603eb7f303", + "https://bioregistry.io/schema/#0000006": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "pid" + }, + "https://bioregistry.io/schema/#0000024": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=eff796f3-6195-11e5-8ac5-06603eb7f303" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pid.pathway" + } + }, + { + "@id": "https://bioregistry.io/registry/pspub", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Documentation of the Phenoscape Curation Workflow", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Phenoscape Publication" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://wiki.phenoscape.org/wiki/Curation_workflow" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "pspub" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/obi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/kegg.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/iev", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Event (INOH pathway ontology)" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/spbase" + "@id": "https://registry.bio2kg.org/resource/iev" }, { - "@id": "https://bioregistry.io/registry/omrse" + "@id": "https://bioregistry.io/metaregistry/biocontext/IEV" }, { - "@id": "https://bioregistry.io/registry/co_331" - }, + "@id": "https://www.obofoundry.org/ontology/iev" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ivdb" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/ror" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/htn" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/ped" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.inoh.org" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=0000000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iev" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0127", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/wormpep", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/NCRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/cellosaurus.resource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The set of prefixes used in the Cellosaurus resource", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cellosaurus Registry" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mpid" + "@value": "cells" }, { - "@id": "https://bioregistry.io/registry/doqcs.pathway" + "@value": "registry" }, { - "@id": "https://bioregistry.io/registry/efo" - }, + "@value": "cell lines" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://web.expasy.org/cellosaurus/" + }, + "https://bioregistry.io/schema/#0000005": "4DN", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/cellosaurus/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/cellosaurus/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/4DN" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cellosaurus.resource" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drugbankv4.target", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/huge", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/yeastract", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.wikidata.org/entity/P842", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ARRAYEXPRESS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://orcid.org/0000-0003-4871-5569", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rebecca Jackson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rbca.jackson@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/NIF_Subcellular", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/inhand", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The International Harmonization of Nomenclature and Diagnostic criteria" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.9gqfpm" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "biomedical science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.goreni.org/gr3_nomenclature.php" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "inhand" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/bioportal", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/icepo" + "@id": "https://bioportal.bioontology.org/ontologies/FB-DV" }, { - "@id": "https://bioregistry.io/registry/cpt" + "@id": "https://bioportal.bioontology.org/ontologies/STATO" }, { - "@id": "https://bioregistry.io/registry/phytozome.locus" + "@id": "https://bioportal.bioontology.org/ontologies/MCO" }, { - "@id": "https://bioregistry.io/registry/lgic" + "@id": "https://bioportal.bioontology.org/ontologies/NEMO" }, { - "@id": "https://bioregistry.io/registry/snctp" + "@id": "https://bioportal.bioontology.org/ontologies/GEXO" }, { - "@id": "https://bioregistry.io/registry/aeon" + "@id": "https://bioportal.bioontology.org/ontologies/ITO" }, { - "@id": "https://bioregistry.io/registry/conoserver" + "@id": "https://bioportal.bioontology.org/ontologies/NCIT" }, { - "@id": "https://bioregistry.io/registry/ubprop" + "@id": "https://bioportal.bioontology.org/ontologies/CAO" }, { - "@id": "https://bioregistry.io/registry/txpo" + "@id": "https://bioportal.bioontology.org/ontologies/REXO" }, { - "@id": "https://bioregistry.io/registry/oryzabase.strain" + "@id": "https://bioportal.bioontology.org/ontologies/OMO" }, { - "@id": "https://bioregistry.io/registry/vfdb.genus" + "@id": "https://bioportal.bioontology.org/ontologies/CDAO" }, { - "@id": "https://bioregistry.io/registry/hsapdv" + "@id": "https://bioportal.bioontology.org/ontologies/VSO" }, { - "@id": "https://bioregistry.io/registry/roleo" + "@id": "https://bioportal.bioontology.org/ontologies/HGNC" }, { - "@id": "https://bioregistry.io/registry/tfclass" + "@id": "https://bioportal.bioontology.org/ontologies/HOM" }, { - "@id": "https://bioregistry.io/registry/sabiork.ec" + "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM" }, { - "@id": "https://bioregistry.io/registry/coriell" + "@id": "https://bioportal.bioontology.org/ontologies/DCAT" }, { - "@id": "https://bioregistry.io/registry/ctd.disease" + "@id": "https://bioportal.bioontology.org/ontologies/RBO" }, { - "@id": "https://bioregistry.io/registry/olatdv" + "@id": "https://bioportal.bioontology.org/ontologies/GAZ" }, { - "@id": "https://bioregistry.io/registry/rgd.qtl" + "@id": "https://bioportal.bioontology.org/ontologies/ATC" }, { - "@id": "https://bioregistry.io/registry/genecards.genenote" + "@id": "https://bioportal.bioontology.org/ontologies/PORO" }, { - "@id": "https://bioregistry.io/registry/tkg" + "@id": "https://bioportal.bioontology.org/ontologies/ONS" }, { - "@id": "https://bioregistry.io/registry/mediadive.medium" + "@id": "https://bioportal.bioontology.org/ontologies/ICEO" }, { - "@id": "https://bioregistry.io/registry/atol" + "@id": "https://bioportal.bioontology.org/ontologies/LPT" }, { - "@id": "https://bioregistry.io/registry/iso.3166" + "@id": "https://bioportal.bioontology.org/ontologies/ROLEO" }, { - "@id": "https://bioregistry.io/registry/dto" + "@id": "https://bioportal.bioontology.org/ontologies/SIBO" }, { - "@id": "https://bioregistry.io/registry/smart" + "@id": "https://bioportal.bioontology.org/ontologies/DUO" }, { - "@id": "https://bioregistry.io/registry/mosaic" + "@id": "https://bioportal.bioontology.org/ontologies/EMAPA" }, { - "@id": "https://bioregistry.io/registry/nemo2" + "@id": "https://bioportal.bioontology.org/ontologies/DDPHENO" }, { - "@id": "https://bioregistry.io/registry/gnps.task" + "@id": "https://bioportal.bioontology.org/ontologies/EXO" }, { - "@id": "https://bioregistry.io/registry/fideo" + "@id": "https://bioportal.bioontology.org/ontologies/ZECO" }, { - "@id": "https://bioregistry.io/registry/vmhmetabolite" + "@id": "https://bioportal.bioontology.org/ontologies/BFO" }, { - "@id": "https://bioregistry.io/registry/drugbank.metabolite" + "@id": "https://bioportal.bioontology.org/ontologies/RNAO" }, { - "@id": "https://bioregistry.io/registry/cheminf" + "@id": "https://bioportal.bioontology.org/ontologies/MOP" }, { - "@id": "https://bioregistry.io/registry/oryzabase.mutant" + "@id": "https://bioportal.bioontology.org/ontologies/CMPO" }, { - "@id": "https://bioregistry.io/registry/lei" + "@id": "https://bioportal.bioontology.org/ontologies/SO" }, { - "@id": "https://bioregistry.io/registry/vac" + "@id": "https://bioportal.bioontology.org/ontologies/MEDDRA" }, { - "@id": "https://bioregistry.io/registry/nucleardb" + "@id": "https://bioportal.bioontology.org/ontologies/DC" }, { - "@id": "https://bioregistry.io/registry/ato" + "@id": "https://bioportal.bioontology.org/ontologies/ZEA" }, { - "@id": "https://bioregistry.io/registry/pathwaycommons" + "@id": "https://bioportal.bioontology.org/ontologies/ENM" }, { - "@id": "https://bioregistry.io/registry/sep" + "@id": "https://bioportal.bioontology.org/ontologies/IDO" }, { - "@id": "https://bioregistry.io/registry/idot" + "@id": "https://bioportal.bioontology.org/ontologies/MIXS" }, { - "@id": "https://bioregistry.io/registry/cido" + "@id": "https://bioportal.bioontology.org/ontologies/RXNO" }, { - "@id": "https://bioregistry.io/registry/span" + "@id": "https://bioportal.bioontology.org/ontologies/NGBO" }, { - "@id": "https://bioregistry.io/registry/stap" + "@id": "https://bioportal.bioontology.org/ontologies/ONE" }, { - "@id": "https://bioregistry.io/registry/molmedb" + "@id": "https://bioportal.bioontology.org/ontologies/ZFS" }, { - "@id": "https://bioregistry.io/registry/wikipedia.en" + "@id": "https://bioportal.bioontology.org/ontologies/FB-SP" }, { - "@id": "https://bioregistry.io/registry/arrayexpress" + "@id": "https://bioportal.bioontology.org/ontologies/EMAP" }, { - "@id": "https://bioregistry.io/registry/oae" + "@id": "https://bioportal.bioontology.org/ontologies/MP" }, { - "@id": "https://bioregistry.io/registry/mir" + "@id": "https://bioportal.bioontology.org/ontologies/HCPCS" }, { - "@id": "https://bioregistry.io/registry/glycopost" + "@id": "https://bioportal.bioontology.org/ontologies/FLOPO" }, { - "@id": "https://bioregistry.io/registry/imex" + "@id": "https://bioportal.bioontology.org/ontologies/SWO" }, { - "@id": "https://bioregistry.io/registry/galen" + "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD" }, { - "@id": "https://bioregistry.io/registry/linguist" + "@id": "https://bioportal.bioontology.org/ontologies/OMP" }, { - "@id": "https://bioregistry.io/registry/hc.npn" + "@id": "https://bioportal.bioontology.org/ontologies/NIFSTD" }, { - "@id": "https://bioregistry.io/registry/imgt.ligm" + "@id": "https://bioportal.bioontology.org/ontologies/QUDT" }, { - "@id": "https://bioregistry.io/registry/rdo" + "@id": "https://bioportal.bioontology.org/ontologies/SPD" }, { - "@id": "https://bioregistry.io/registry/idr" + "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB" }, { - "@id": "https://bioregistry.io/registry/mint" + "@id": "https://bioportal.bioontology.org/ontologies/PROPREO" }, { - "@id": "https://bioregistry.io/registry/maxo" + "@id": "https://bioportal.bioontology.org/ontologies/CHEBI" }, { - "@id": "https://bioregistry.io/registry/aio" + "@id": "https://bioportal.bioontology.org/ontologies/FB-BT" }, { - "@id": "https://bioregistry.io/registry/peff" + "@id": "https://bioportal.bioontology.org/ontologies/MFOEM" }, { - "@id": "https://bioregistry.io/registry/bigg.reaction" + "@id": "https://bioportal.bioontology.org/ontologies/AMPHX" }, { - "@id": "https://bioregistry.io/registry/miriam.collection" + "@id": "https://bioportal.bioontology.org/ontologies/OGSF" }, { - "@id": "https://bioregistry.io/registry/pictar" + "@id": "https://bioportal.bioontology.org/ontologies/EFO" }, { - "@id": "https://bioregistry.io/registry/cnrs" + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2" }, { - "@id": "https://bioregistry.io/registry/exo" + "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT" }, { - "@id": "https://bioregistry.io/registry/langual" + "@id": "https://bioportal.bioontology.org/ontologies/VO" }, { - "@id": "https://bioregistry.io/registry/kegg" + "@id": "https://bioportal.bioontology.org/ontologies/CTENO" }, { - "@id": "https://bioregistry.io/registry/gmd.gcms" + "@id": "https://bioportal.bioontology.org/ontologies/GRO" }, { - "@id": "https://bioregistry.io/registry/ised" + "@id": "https://bioportal.bioontology.org/ontologies/BKO" }, { - "@id": "https://bioregistry.io/registry/yid" + "@id": "https://bioportal.bioontology.org/ontologies/OA" }, { - "@id": "https://bioregistry.io/registry/icf" + "@id": "https://bioportal.bioontology.org/ontologies/CPT" }, { - "@id": "https://bioregistry.io/registry/gpcrnava" + "@id": "https://bioportal.bioontology.org/ontologies/COVID19" }, { - "@id": "https://bioregistry.io/registry/funcbase.yeast" + "@id": "https://bioportal.bioontology.org/ontologies/MIRO" }, { - "@id": "https://bioregistry.io/registry/odc.sci" + "@id": "https://bioportal.bioontology.org/ontologies/PAV" }, { - "@id": "https://bioregistry.io/registry/pharmgkb.disease" + "@id": "https://bioportal.bioontology.org/ontologies/MFO" }, { - "@id": "https://bioregistry.io/registry/ecso" + "@id": "https://bioportal.bioontology.org/ontologies/TXPO" }, { - "@id": "https://bioregistry.io/registry/rpcec" + "@id": "https://bioportal.bioontology.org/ontologies/BCI-O" }, { - "@id": "https://bioregistry.io/registry/obib" + "@id": "https://bioportal.bioontology.org/ontologies/CHEMROF" }, { - "@id": "https://bioregistry.io/registry/sharkipedia.trait" + "@id": "https://bioportal.bioontology.org/ontologies/FOODON" }, { - "@id": "https://bioregistry.io/registry/biogrid.interaction" + "@id": "https://bioportal.bioontology.org/ontologies/ADO" }, { - "@id": "https://bioregistry.io/registry/isrctn" + "@id": "https://bioportal.bioontology.org/ontologies/PLANP" }, { - "@id": "https://bioregistry.io/registry/funcbase.fly" + "@id": "https://bioportal.bioontology.org/ontologies/TIME" }, { - "@id": "https://bioregistry.io/registry/irct" + "@id": "https://bioportal.bioontology.org/ontologies/OMIT" }, { - "@id": "https://bioregistry.io/registry/mpio" + "@id": "https://bioportal.bioontology.org/ontologies/XPO" }, { - "@id": "https://bioregistry.io/registry/dandi" + "@id": "https://bioportal.bioontology.org/ontologies/GSSO" }, { - "@id": "https://bioregistry.io/registry/vhog" + "@id": "https://bioportal.bioontology.org/ontologies/VARIO" }, { - "@id": "https://bioregistry.io/registry/sweetrealm" + "@id": "https://bioportal.bioontology.org/ontologies/UBERON" }, { - "@id": "https://bioregistry.io/registry/metatlas" + "@id": "https://bioportal.bioontology.org/ontologies/MIRNAO" }, { - "@id": "https://bioregistry.io/registry/schem" + "@id": "https://bioportal.bioontology.org/ontologies/DINTO" }, { - "@id": "https://bioregistry.io/registry/interfil" + "@id": "https://bioportal.bioontology.org/ontologies/ADCAD" }, { - "@id": "https://bioregistry.io/registry/nlx.sub" + "@id": "https://bioportal.bioontology.org/ontologies/BIRNLEX" }, { - "@id": "https://bioregistry.io/registry/jcrb" + "@id": "https://bioportal.bioontology.org/ontologies/UO" }, { - "@id": "https://bioregistry.io/registry/pr" + "@id": "https://bioportal.bioontology.org/ontologies/MRO" }, { - "@id": "https://bioregistry.io/registry/dbo" + "@id": "https://bioportal.bioontology.org/ontologies/APO" }, { - "@id": "https://bioregistry.io/registry/ehda" + "@id": "https://bioportal.bioontology.org/ontologies/EPIO" }, { - "@id": "https://bioregistry.io/registry/eol" + "@id": "https://bioportal.bioontology.org/ontologies/FOAF" }, { - "@id": "https://bioregistry.io/registry/co_322" + "@id": "https://bioportal.bioontology.org/ontologies/IAO" }, { - "@id": "https://bioregistry.io/registry/ftt" + "@id": "https://bioportal.bioontology.org/ontologies/COB" }, { - "@id": "https://bioregistry.io/registry/deo" + "@id": "https://bioportal.bioontology.org/ontologies/PW" }, { - "@id": "https://bioregistry.io/registry/gendis" + "@id": "https://bioportal.bioontology.org/ontologies/ARO" }, { - "@id": "https://bioregistry.io/registry/sopharm" + "@id": "https://bioportal.bioontology.org/ontologies/BCGO" }, { - "@id": "https://bioregistry.io/registry/bugbase.expt" + "@id": "https://bioportal.bioontology.org/ontologies/OMIABIS" }, { - "@id": "https://bioregistry.io/registry/fungorum" + "@id": "https://bioportal.bioontology.org/ontologies/MO" }, { - "@id": "https://bioregistry.io/registry/gmd.analyte" + "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF" }, { - "@id": "https://bioregistry.io/registry/wikigenes" + "@id": "https://bioportal.bioontology.org/ontologies/BTO" }, { - "@id": "https://bioregistry.io/registry/go.gpi" + "@id": "https://bioportal.bioontology.org/ontologies/SASAP" }, { - "@id": "https://bioregistry.io/registry/tctr" + "@id": "https://bioportal.bioontology.org/ontologies/BCO" }, { - "@id": "https://bioregistry.io/registry/dcterms" + "@id": "https://bioportal.bioontology.org/ontologies/OM" }, { - "@id": "https://bioregistry.io/registry/dg.anv0" + "@id": "https://bioportal.bioontology.org/ontologies/AFO" }, { - "@id": "https://bioregistry.io/registry/hoso" + "@id": "https://bioportal.bioontology.org/ontologies/VT" }, { - "@id": "https://bioregistry.io/registry/bgee.family" + "@id": "https://bioportal.bioontology.org/ontologies/FAO" }, { - "@id": "https://bioregistry.io/registry/co_323" + "@id": "https://bioportal.bioontology.org/ontologies/ECO" }, { - "@id": "https://bioregistry.io/registry/degradome" + "@id": "https://bioportal.bioontology.org/ontologies/VTO" }, { - "@id": "https://bioregistry.io/registry/sigmaaldrich" + "@id": "https://bioportal.bioontology.org/ontologies/RETO" }, { - "@id": "https://bioregistry.io/registry/ardb" + "@id": "https://bioportal.bioontology.org/ontologies/LIPRO" }, { - "@id": "https://bioregistry.io/registry/brenda.ligand" + "@id": "https://bioportal.bioontology.org/ontologies/DRON" }, { - "@id": "https://bioregistry.io/registry/stato" + "@id": "https://bioportal.bioontology.org/ontologies/SWEET" }, { - "@id": "https://bioregistry.io/registry/pocketome" + "@id": "https://bioportal.bioontology.org/ontologies/HAO" }, { - "@id": "https://bioregistry.io/registry/cvx" + "@id": "https://bioportal.bioontology.org/ontologies/OBIB" }, { - "@id": "https://bioregistry.io/registry/sedml.format" + "@id": "https://bioportal.bioontology.org/ontologies/SENSO" }, { - "@id": "https://bioregistry.io/registry/cryoem" + "@id": "https://bioportal.bioontology.org/ontologies/MPIO" }, { - "@id": "https://bioregistry.io/registry/rfam" + "@id": "https://bioportal.bioontology.org/ontologies/CEPH" }, { - "@id": "https://bioregistry.io/registry/yrcpdr" + "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL" }, { - "@id": "https://bioregistry.io/registry/imsr.apb" + "@id": "https://bioportal.bioontology.org/ontologies/MI" }, { - "@id": "https://bioregistry.io/registry/hgmd" + "@id": "https://bioportal.bioontology.org/ontologies/MCCL" }, { - "@id": "https://bioregistry.io/registry/cdpd" + "@id": "https://bioportal.bioontology.org/ontologies/MIAPA" }, { - "@id": "https://bioregistry.io/registry/th" + "@id": "https://bioportal.bioontology.org/ontologies/NOMEN" }, { - "@id": "https://bioregistry.io/registry/pcl" + "@id": "https://bioportal.bioontology.org/ontologies/PCO" }, { - "@id": "https://bioregistry.io/registry/oma.protein" + "@id": "https://bioportal.bioontology.org/ontologies/COLAO" }, { - "@id": "https://bioregistry.io/registry/worldavatar.compchem" + "@id": "https://bioportal.bioontology.org/ontologies/DCTERMS" }, { - "@id": "https://bioregistry.io/registry/thermofisher" + "@id": "https://bioportal.bioontology.org/ontologies/CIDO" }, { - "@id": "https://bioregistry.io/registry/ena.embl" + "@id": "https://bioportal.bioontology.org/ontologies/PLANA" }, { - "@id": "https://bioregistry.io/registry/geonames" + "@id": "https://bioportal.bioontology.org/ontologies/DERMO" }, { - "@id": "https://bioregistry.io/registry/astd" + "@id": "https://bioportal.bioontology.org/ontologies/EDAM" }, { - "@id": "https://bioregistry.io/registry/bionumbers" + "@id": "https://bioportal.bioontology.org/ontologies/CCO" }, { - "@id": "https://bioregistry.io/registry/bcrj" + "@id": "https://bioportal.bioontology.org/ontologies/MONDO" }, { - "@id": "https://bioregistry.io/registry/ecn" + "@id": "https://bioportal.bioontology.org/ontologies/TAO" }, { - "@id": "https://bioregistry.io/registry/inchi" + "@id": "https://bioportal.bioontology.org/ontologies/IOBC" }, { - "@id": "https://bioregistry.io/registry/abm" + "@id": "https://bioportal.bioontology.org/ontologies/INO" }, { - "@id": "https://bioregistry.io/registry/sider.drug" + "@id": "https://bioportal.bioontology.org/ontologies/CTO" }, { - "@id": "https://bioregistry.io/registry/scopus" + "@id": "https://bioportal.bioontology.org/ontologies/GEO" }, { - "@id": "https://bioregistry.io/registry/crop2ml" + "@id": "https://bioportal.bioontology.org/ontologies/BSPO" }, { - "@id": "https://bioregistry.io/registry/ssbd.project" + "@id": "https://bioportal.bioontology.org/ontologies/UPA" }, { - "@id": "https://bioregistry.io/registry/phrr" + "@id": "https://bioportal.bioontology.org/ontologies/ECAO" }, { - "@id": "https://bioregistry.io/registry/ensembl" + "@id": "https://bioportal.bioontology.org/ontologies/PTO" }, { - "@id": "https://bioregistry.io/registry/pubchem.compound" + "@id": "https://bioportal.bioontology.org/ontologies/FIX" }, { - "@id": "https://bioregistry.io/registry/orphanet" + "@id": "https://bioportal.bioontology.org/ontologies/BAO" }, { - "@id": "https://bioregistry.io/registry/sabiork.compound" + "@id": "https://bioportal.bioontology.org/ontologies/PSO" }, { - "@id": "https://bioregistry.io/registry/phenolexplorer" + "@id": "https://bioportal.bioontology.org/ontologies/OAE" }, { - "@id": "https://bioregistry.io/registry/collagenmutdb" + "@id": "https://bioportal.bioontology.org/ontologies/LEPAO" }, { - "@id": "https://bioregistry.io/registry/protcom" + "@id": "https://bioportal.bioontology.org/ontologies/OMRSE" }, { - "@id": "https://bioregistry.io/registry/google.book" + "@id": "https://bioportal.bioontology.org/ontologies/DIDEO" }, { - "@id": "https://bioregistry.io/registry/scholia.resource" + "@id": "https://bioportal.bioontology.org/ontologies/HANCESTRO" }, { - "@id": "https://bioregistry.io/registry/swiss-model" + "@id": "https://bioportal.bioontology.org/ontologies/GNO" }, { - "@id": "https://bioregistry.io/registry/biokc" + "@id": "https://bioportal.bioontology.org/ontologies/SALMON" }, { - "@id": "https://bioregistry.io/registry/cath" + "@id": "https://bioportal.bioontology.org/ontologies/MAT" }, { - "@id": "https://bioregistry.io/registry/miaa" + "@id": "https://bioportal.bioontology.org/ontologies/RXNORM" }, { - "@id": "https://bioregistry.io/registry/ricenetdb.mirna" + "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" }, { - "@id": "https://bioregistry.io/registry/ncbibook" + "@id": "https://bioportal.bioontology.org/ontologies/CLAO" }, { - "@id": "https://bioregistry.io/registry/rapdb.locus" + "@id": "https://bioportal.bioontology.org/ontologies/LABO" }, { - "@id": "https://bioregistry.io/registry/ratmap" + "@id": "https://bioportal.bioontology.org/ontologies/OGG" }, { - "@id": "https://bioregistry.io/registry/geonames.feature" + "@id": "https://bioportal.bioontology.org/ontologies/MA" }, { - "@id": "https://bioregistry.io/registry/bridgedb" + "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV" }, { - "@id": "https://bioregistry.io/registry/drduke" + "@id": "https://bioportal.bioontology.org/ontologies/PPO" }, { - "@id": "https://bioregistry.io/registry/horizon_discovery" + "@id": "https://bioportal.bioontology.org/ontologies/ENVO" }, { - "@id": "https://bioregistry.io/registry/jgi.proposal" + "@id": "https://bioportal.bioontology.org/ontologies/pseudo" }, { - "@id": "https://bioregistry.io/registry/tred" + "@id": "https://bioportal.bioontology.org/ontologies/VIDO" }, { - "@id": "https://bioregistry.io/registry/nextprot.family" + "@id": "https://bioportal.bioontology.org/ontologies/MESH" }, { - "@id": "https://bioregistry.io/registry/slm" + "@id": "https://bioportal.bioontology.org/ontologies/EOL" }, { - "@id": "https://bioregistry.io/registry/panther.pthcmp" + "@id": "https://bioportal.bioontology.org/ontologies/ZFA" }, { - "@id": "https://bioregistry.io/registry/aeo" + "@id": "https://bioportal.bioontology.org/ontologies/PO" }, { - "@id": "https://bioregistry.io/registry/vido" + "@id": "https://bioportal.bioontology.org/ontologies/DCM" }, { - "@id": "https://bioregistry.io/registry/github" + "@id": "https://bioportal.bioontology.org/ontologies/CRISP" }, { - "@id": "https://bioregistry.io/registry/pirsf" + "@id": "https://bioportal.bioontology.org/ontologies/VSAO" }, { - "@id": "https://bioregistry.io/registry/bao" + "@id": "https://bioportal.bioontology.org/ontologies/RO" }, { - "@id": "https://bioregistry.io/registry/glyconavi" + "@id": "https://bioportal.bioontology.org/ontologies/OHMI" }, { - "@id": "https://bioregistry.io/registry/mgnify.samp" + "@id": "https://bioportal.bioontology.org/ontologies/PCL" }, { - "@id": "https://bioregistry.io/registry/gudmap" + "@id": "https://bioportal.bioontology.org/ontologies/PECO" }, { - "@id": "https://bioregistry.io/registry/ons" + "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ" }, { - "@id": "https://bioregistry.io/registry/frbrer" + "@id": "https://bioportal.bioontology.org/ontologies/CRO" }, { - "@id": "https://bioregistry.io/registry/pdb-ccd" + "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS" }, { - "@id": "https://bioregistry.io/registry/cellopub" + "@id": "https://bioportal.bioontology.org/ontologies/AIO" }, { - "@id": "https://bioregistry.io/registry/pride.project" + "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB" }, { - "@id": "https://bioregistry.io/registry/orthodb" + "@id": "https://bioportal.bioontology.org/ontologies/AISM" }, { - "@id": "https://bioregistry.io/registry/hgnc.genefamily" + "@id": "https://bioportal.bioontology.org/ontologies/OPL" }, { - "@id": "https://bioregistry.io/registry/obcs" + "@id": "https://bioportal.bioontology.org/ontologies/OARCS" }, { - "@id": "https://bioregistry.io/registry/shibase" + "@id": "https://bioportal.bioontology.org/ontologies/LOINC" }, { - "@id": "https://bioregistry.io/registry/so" + "@id": "https://bioportal.bioontology.org/ontologies/EPSO" }, { - "@id": "https://bioregistry.io/registry/depod" + "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV" }, { - "@id": "https://bioregistry.io/registry/opb" + "@id": "https://bioportal.bioontology.org/ontologies/NBO" }, { - "@id": "https://bioregistry.io/registry/dg5b0d" + "@id": "https://bioportal.bioontology.org/ontologies/OBOREL" }, { - "@id": "https://bioregistry.io/registry/genatlas" + "@id": "https://bioportal.bioontology.org/ontologies/NPO" }, { - "@id": "https://bioregistry.io/registry/paxdb.organism" + "@id": "https://bioportal.bioontology.org/ontologies/ONTONEO" }, { - "@id": "https://bioregistry.io/registry/radiomics" + "@id": "https://bioportal.bioontology.org/ontologies/PHENX" }, { - "@id": "https://bioregistry.io/registry/ito" + "@id": "https://bioportal.bioontology.org/ontologies/RGD" }, { - "@id": "https://bioregistry.io/registry/nlx.chem" + "@id": "https://bioportal.bioontology.org/ontologies/FBbi" }, { - "@id": "https://bioregistry.io/registry/ypo" + "@id": "https://bioportal.bioontology.org/ontologies/FLU" }, { - "@id": "https://bioregistry.io/registry/funcbase.mouse" + "@id": "https://bioportal.bioontology.org/ontologies/AERO" }, { - "@id": "https://bioregistry.io/registry/dragondb.protein" + "@id": "https://bioportal.bioontology.org/ontologies/SEP" }, { - "@id": "https://bioregistry.io/registry/merops.family" + "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM" }, { - "@id": "https://bioregistry.io/registry/ricenetdb.protein" + "@id": "https://bioportal.bioontology.org/ontologies/KISAO" }, { - "@id": "https://bioregistry.io/registry/vsdb" + "@id": "https://bioportal.bioontology.org/ontologies/GO" }, { - "@id": "https://bioregistry.io/registry/meddra" + "@id": "https://bioportal.bioontology.org/ontologies/SCHEMA" }, { - "@id": "https://bioregistry.io/registry/unipathway.compound" + "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK" }, { - "@id": "https://bioregistry.io/registry/sphn" + "@id": "https://bioportal.bioontology.org/ontologies/DDANAT" }, { - "@id": "https://bioregistry.io/registry/mediadive.solution" + "@id": "https://bioportal.bioontology.org/ontologies/HP_O" }, { - "@id": "https://bioregistry.io/registry/begdb" + "@id": "https://bioportal.bioontology.org/ontologies/VANDF" }, { - "@id": "https://bioregistry.io/registry/imsr_tac" + "@id": "https://bioportal.bioontology.org/ontologies/SUGARBIND" }, { - "@id": "https://bioregistry.io/registry/smpdb" + "@id": "https://bioportal.bioontology.org/ontologies/EUPATH" }, { - "@id": "https://bioregistry.io/registry/unirule" + "@id": "https://bioportal.bioontology.org/ontologies/MFMO" }, { - "@id": "https://bioregistry.io/registry/cito" + "@id": "https://bioportal.bioontology.org/ontologies/RDFS" }, { - "@id": "https://bioregistry.io/registry/neuromorpho" + "@id": "https://bioportal.bioontology.org/ontologies/DATACITE" }, { - "@id": "https://bioregistry.io/registry/genecards.geneloc" + "@id": "https://bioportal.bioontology.org/ontologies/REPRODUCE-ME" }, { - "@id": "https://bioregistry.io/registry/hivreagentprogram" + "@id": "https://bioportal.bioontology.org/ontologies/NDFRT" }, { - "@id": "https://bioregistry.io/registry/wikipathways.vocab" + "@id": "https://bioportal.bioontology.org/ontologies/DOID" }, { - "@id": "https://bioregistry.io/registry/ncats.drug" + "@id": "https://bioportal.bioontology.org/ontologies/ERO" }, { - "@id": "https://bioregistry.io/registry/emapa" + "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM" }, { - "@id": "https://bioregistry.io/registry/pspub" + "@id": "https://bioportal.bioontology.org/ontologies/ORDO" }, { - "@id": "https://bioregistry.io/registry/aero" + "@id": "https://bioportal.bioontology.org/ontologies/ONTOAVIDA" }, { - "@id": "https://bioregistry.io/registry/phosphopoint.kinase" + "@id": "https://bioportal.bioontology.org/ontologies/DTO" }, { - "@id": "https://bioregistry.io/registry/agsc" + "@id": "https://bioportal.bioontology.org/ontologies/EHDA" }, { - "@id": "https://bioregistry.io/registry/icd9cm" + "@id": "https://bioportal.bioontology.org/ontologies/RS" }, { - "@id": "https://bioregistry.io/registry/vita" + "@id": "https://bioportal.bioontology.org/ontologies/WB-BT" }, { - "@id": "https://bioregistry.io/registry/co_360" + "@id": "https://bioportal.bioontology.org/ontologies/FOBI" }, { - "@id": "https://bioregistry.io/registry/dpv" + "@id": "https://bioportal.bioontology.org/ontologies/APAONTO" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioportal.bioontology.org/ontologies/UPHENO" }, { - "@id": "https://bioregistry.io/registry/epso" + "@id": "https://bioportal.bioontology.org/ontologies/CL" }, { - "@id": "https://bioregistry.io/registry/co_348" + "@id": "https://bioportal.bioontology.org/ontologies/NDDF" }, { - "@id": "https://bioregistry.io/registry/emolecules" + "@id": "https://bioportal.bioontology.org/ontologies/SAO" }, { - "@id": "https://bioregistry.io/registry/aphidbase.transcript" + "@id": "https://bioportal.bioontology.org/ontologies/STY" }, { - "@id": "https://bioregistry.io/registry/nlx.oen" + "@id": "https://bioportal.bioontology.org/ontologies/XAO" }, { - "@id": "https://bioregistry.io/registry/genecards.geneannot" + "@id": "https://bioportal.bioontology.org/ontologies/ICF" }, { - "@id": "https://bioregistry.io/registry/omim" + "@id": "https://bioportal.bioontology.org/ontologies/OOSTT" }, { - "@id": "https://bioregistry.io/registry/fairsharing.user" + "@id": "https://bioportal.bioontology.org/ontologies/IDOMAL" }, { - "@id": "https://bioregistry.io/registry/fr" + "@id": "https://bioportal.bioontology.org/ontologies/OBA" }, { - "@id": "https://bioregistry.io/registry/asap" + "@id": "https://bioportal.bioontology.org/ontologies/OHPI" }, { - "@id": "https://bioregistry.io/registry/sbo" + "@id": "https://bioportal.bioontology.org/ontologies/OPMI" }, { - "@id": "https://bioregistry.io/registry/civic.eid" + "@id": "https://bioportal.bioontology.org/ontologies/GENO" }, { - "@id": "https://bioregistry.io/registry/pba" + "@id": "https://bioportal.bioontology.org/ontologies/PATO" }, { - "@id": "https://bioregistry.io/registry/rnajunction" + "@id": "https://bioportal.bioontology.org/ontologies/FPLX" }, { - "@id": "https://bioregistry.io/registry/bioregistry.registry" + "@id": "https://bioportal.bioontology.org/ontologies/CDNO" }, { - "@id": "https://bioregistry.io/registry/mmmp.biomaps" + "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19" }, { - "@id": "https://bioregistry.io/registry/oid" + "@id": "https://bioportal.bioontology.org/ontologies/CHMO" }, { - "@id": "https://bioregistry.io/registry/snap" + "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV" }, { - "@id": "https://bioregistry.io/registry/oslc" + "@id": "https://bioportal.bioontology.org/ontologies/WB-PHENOTYPE" }, { - "@id": "https://bioregistry.io/registry/interpro" + "@id": "https://bioportal.bioontology.org/ontologies/ORTH" }, { - "@id": "https://bioregistry.io/registry/swissregulon" + "@id": "https://bioportal.bioontology.org/ontologies/PHIPO" }, { - "@id": "https://bioregistry.io/registry/molbase" + "@id": "https://bioportal.bioontology.org/ontologies/AEO" }, { - "@id": "https://bioregistry.io/registry/insdc.run" + "@id": "https://bioportal.bioontology.org/ontologies/GRO-CPGA" }, { - "@id": "https://bioregistry.io/registry/eo" + "@id": "https://bioportal.bioontology.org/ontologies/NANDO" }, { - "@id": "https://bioregistry.io/registry/scopus.affiliation" + "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK" }, { - "@id": "https://bioregistry.io/registry/glycoepitope" + "@id": "https://bioportal.bioontology.org/ontologies/MAXO" }, { - "@id": "https://bioregistry.io/registry/salmon" + "@id": "https://bioportal.bioontology.org/ontologies/SBO" }, { - "@id": "https://bioregistry.io/registry/repeatsdb.protein" + "@id": "https://bioportal.bioontology.org/ontologies/OVAE" }, { - "@id": "https://bioregistry.io/registry/hl7.v3codesystem" + "@id": "https://bioportal.bioontology.org/ontologies/NCBITAXON" }, { - "@id": "https://bioregistry.io/registry/unigene" + "@id": "https://bioportal.bioontology.org/ontologies/PMR" }, { - "@id": "https://bioregistry.io/registry/noaa" + "@id": "https://bioportal.bioontology.org/ontologies/LBO" }, { - "@id": "https://bioregistry.io/registry/frapo" + "@id": "https://bioportal.bioontology.org/ontologies/ATOL" }, { - "@id": "https://bioregistry.io/registry/vmhgene" + "@id": "https://bioportal.bioontology.org/ontologies/ATO" }, { - "@id": "https://bioregistry.io/registry/ecogene" + "@id": "https://bioportal.bioontology.org/ontologies/TADS" }, { - "@id": "https://bioregistry.io/registry/emmo.cif" + "@id": "https://bioportal.bioontology.org/ontologies/CIO" }, { - "@id": "https://bioregistry.io/registry/chemspider" + "@id": "https://bioportal.bioontology.org/ontologies/HTN" }, { - "@id": "https://bioregistry.io/registry/biogrid" + "@id": "https://bioportal.bioontology.org/ontologies/SCDO" }, { - "@id": "https://bioregistry.io/registry/skm" + "@id": "https://bioportal.bioontology.org/ontologies/TTO" }, { - "@id": "https://bioregistry.io/registry/fishbase.species" + "@id": "https://bioportal.bioontology.org/ontologies/GECKO" }, { - "@id": "https://bioregistry.io/registry/csd" + "@id": "https://bioportal.bioontology.org/ontologies/CCF" }, { - "@id": "https://bioregistry.io/registry/uminctr" + "@id": "https://bioportal.bioontology.org/ontologies/XCO" }, { - "@id": "https://bioregistry.io/registry/dbsnp" + "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS" }, { - "@id": "https://bioregistry.io/registry/ohd" + "@id": "https://bioportal.bioontology.org/ontologies/CTCAE" }, { - "@id": "https://bioregistry.io/registry/coconut" + "@id": "https://bioportal.bioontology.org/ontologies/REX" }, { - "@id": "https://bioregistry.io/registry/greengenes" + "@id": "https://bioportal.bioontology.org/ontologies/FIDEO" }, { - "@id": "https://bioregistry.io/registry/iso15926" + "@id": "https://bioportal.bioontology.org/ontologies/XLMOD" }, { - "@id": "https://bioregistry.io/registry/bactibase" + "@id": "https://bioportal.bioontology.org/ontologies/PR" }, { - "@id": "https://bioregistry.io/registry/ihw" + "@id": "https://bioportal.bioontology.org/ontologies/NCRO" }, { - "@id": "https://bioregistry.io/registry/imgt.primerdb" + "@id": "https://bioportal.bioontology.org/ontologies/CHIRO" }, { - "@id": "https://bioregistry.io/registry/wikipathways" + "@id": "https://bioportal.bioontology.org/ontologies/TRANS" }, { - "@id": "https://bioregistry.io/registry/mampol" + "@id": "https://bioportal.bioontology.org/ontologies/PSDO" }, { - "@id": "https://bioregistry.io/registry/icd10pcs" + "@id": "https://bioportal.bioontology.org/ontologies/SIO" }, { - "@id": "https://bioregistry.io/registry/ido" + "@id": "https://bioportal.bioontology.org/ontologies/DISDRIV" }, { - "@id": "https://bioregistry.io/registry/loggerhead" + "@id": "https://bioportal.bioontology.org/ontologies/MFOMD" }, { - "@id": "https://bioregistry.io/registry/mat" + "@id": "https://bioportal.bioontology.org/ontologies/MPATH" }, { - "@id": "https://bioregistry.io/registry/iceo" + "@id": "https://bioportal.bioontology.org/ontologies/DPO" }, { - "@id": "https://bioregistry.io/registry/co_346" + "@id": "https://bioportal.bioontology.org/ontologies/FB-CV" }, { - "@id": "https://bioregistry.io/registry/vbase2" + "@id": "https://bioportal.bioontology.org/ontologies/FYPO" }, { - "@id": "https://bioregistry.io/registry/mirbase.family" + "@id": "https://bioportal.bioontology.org/ontologies/CLYH" }, { - "@id": "https://bioregistry.io/registry/ccds" + "@id": "https://bioportal.bioontology.org/ontologies/CLO" }, { - "@id": "https://bioregistry.io/registry/biomodels.vocabulary" + "@id": "https://bioportal.bioontology.org/ontologies/OGI" }, { - "@id": "https://bioregistry.io/registry/opmi" + "@id": "https://bioportal.bioontology.org/ontologies/CARO" }, { - "@id": "https://bioregistry.io/registry/biosimulators" + "@id": "https://bioportal.bioontology.org/ontologies/NMR" }, { - "@id": "https://bioregistry.io/registry/morpheus" + "@id": "https://bioportal.bioontology.org/ontologies/PDUMDV" }, { - "@id": "https://bioregistry.io/registry/itis" + "@id": "https://bioportal.bioontology.org/ontologies/GALEN" }, { - "@id": "https://bioregistry.io/registry/idomal" + "@id": "https://bioportal.bioontology.org/ontologies/RADLEX" }, { - "@id": "https://bioregistry.io/registry/dbprobe" + "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS" }, { - "@id": "https://bioregistry.io/registry/hpm.protein" + "@id": "https://bioportal.bioontology.org/ontologies/MF" }, { - "@id": "https://bioregistry.io/registry/hdl" + "@id": "https://bioportal.bioontology.org/ontologies/SEPIO" }, { - "@id": "https://bioregistry.io/registry/zenodo.record" + "@id": "https://bioportal.bioontology.org/ontologies/AGRO" }, { - "@id": "https://bioregistry.io/registry/co_327" + "@id": "https://bioportal.bioontology.org/ontologies/OLATDV" }, { - "@id": "https://bioregistry.io/registry/glida.gpcr" + "@id": "https://bioportal.bioontology.org/ontologies/VHOG" }, { - "@id": "https://bioregistry.io/registry/odam" + "@id": "https://bioportal.bioontology.org/ontologies/OHD" }, { - "@id": "https://bioregistry.io/registry/shex" + "@id": "https://bioportal.bioontology.org/ontologies/FMA" }, { - "@id": "https://bioregistry.io/registry/affy.probeset" + "@id": "https://bioportal.bioontology.org/ontologies/ECOCORE" }, { - "@id": "https://bioregistry.io/registry/hso" + "@id": "https://bioportal.bioontology.org/ontologies/ADW" }, { - "@id": "https://bioregistry.io/registry/phipo" + "@id": "https://bioportal.bioontology.org/ontologies/SOPHARM" }, { - "@id": "https://bioregistry.io/registry/pao" + "@id": "https://bioportal.bioontology.org/ontologies/MAMO" }, { - "@id": "https://bioregistry.io/registry/spdx" + "@id": "https://bioportal.bioontology.org/ontologies/OMIM" }, { - "@id": "https://bioregistry.io/registry/jcsd" + "@id": "https://bioportal.bioontology.org/ontologies/EDDA" }, { - "@id": "https://bioregistry.io/registry/miapa" + "@id": "https://bioportal.bioontology.org/ontologies/TEDDY" }, { - "@id": "https://bioregistry.io/registry/sh" + "@id": "https://bioportal.bioontology.org/ontologies/HOIP" }, { - "@id": "https://bioregistry.io/registry/caloha" + "@id": "https://bioportal.bioontology.org/ontologies/ZP" }, { - "@id": "https://bioregistry.io/registry/complexportal" + "@id": "https://bioportal.bioontology.org/ontologies/OPB" }, { - "@id": "https://bioregistry.io/registry/ceph" + "@id": "https://bioportal.bioontology.org/ontologies/CVDO" }, { - "@id": "https://bioregistry.io/registry/bind" + "@id": "https://bioportal.bioontology.org/ontologies/PDRO" }, { - "@id": "https://bioregistry.io/registry/mmrrc" + "@id": "https://bioportal.bioontology.org/ontologies/GFO" }, { - "@id": "https://bioregistry.io/registry/pharmgkb.pathways" + "@id": "https://bioportal.bioontology.org/ontologies/CMO" }, { - "@id": "https://bioregistry.io/registry/cco" + "@id": "https://bioportal.bioontology.org/ontologies/SYMP" }, { - "@id": "https://bioregistry.io/registry/mycobank" + "@id": "https://bioportal.bioontology.org/ontologies/TGMA" }, { - "@id": "https://bioregistry.io/registry/scomp" + "@id": "https://bioportal.bioontology.org/ontologies/EHDAA" }, { - "@id": "https://bioregistry.io/registry/lspci" + "@id": "https://bioportal.bioontology.org/ontologies/FOVT" }, { - "@id": "https://bioregistry.io/registry/gc" + "@id": "https://bioportal.bioontology.org/ontologies/MS" }, { - "@id": "https://bioregistry.io/registry/mgi" + "@id": "https://bioportal.bioontology.org/ontologies/MOSAIC" }, { - "@id": "https://bioregistry.io/registry/bindingdb" + "@id": "https://bioportal.bioontology.org/ontologies/ECSO" }, { - "@id": "https://bioregistry.io/registry/mirnest" + "@id": "https://bioportal.bioontology.org/ontologies/OBI" }, { - "@id": "https://bioregistry.io/registry/diseasesdb" + "@id": "https://bioportal.bioontology.org/ontologies/ICO" }, { - "@id": "https://bioregistry.io/registry/kegg.genome" + "@id": "https://bioportal.bioontology.org/ontologies/ICD10" }, { - "@id": "https://bioregistry.io/registry/cteno" + "@id": "https://bioportal.bioontology.org/ontologies/ECTO" }, { - "@id": "https://bioregistry.io/registry/virushostdb" + "@id": "https://bioportal.bioontology.org/ontologies/FALDO" }, { - "@id": "https://bioregistry.io/registry/zinc" + "@id": "https://bioportal.bioontology.org/ontologies/MDM" }, { - "@id": "https://bioregistry.io/registry/civic.mpid" + "@id": "https://bioportal.bioontology.org/ontologies/ECG" }, { - "@id": "https://bioregistry.io/registry/genewiki" + "@id": "https://bioportal.bioontology.org/ontologies/OGMS" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://bioportal.bioontology.org/ontologies/WB-LS" }, { - "@id": "https://bioregistry.io/registry/gold.genome" + "@id": "https://bioportal.bioontology.org/ontologies/MMO" }, { - "@id": "https://bioregistry.io/registry/fcb" + "@id": "https://bioportal.bioontology.org/ontologies/HSO" }, { - "@id": "https://bioregistry.io/registry/ogsf" - }, + "@id": "https://bioportal.bioontology.org/ontologies/OBCS" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioPortal Prefixes" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://bioportal.bioontology.org/" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "CHEBI" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://bioportal.bioontology.org/ontologies/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6875-5360" + } + }, + { + "@id": "https://bioregistry.io/registry/biomodels.db", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioModels Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mesh.2013" + "@id": "https://registry.identifiers.org/registry/biomodels.db" }, { - "@id": "https://bioregistry.io/registry/umls" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db" }, { - "@id": "https://bioregistry.io/registry/glida.ligand" + "@id": "https://bioregistry.io/metaregistry/go/resolve/BIOMD" }, { - "@id": "https://bioregistry.io/registry/inaturalist.user" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMODELS.DB" }, { - "@id": "https://bioregistry.io/registry/ird.segment" + "@id": "https://registry.bio2kg.org/resource/biomodels" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "model" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/biomodels/" + }, + "https://bioregistry.io/schema/#0000005": "BIOMD0000000048", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biomodels/$1", + "https://bioregistry.io/schema/#0000008": "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "BIOMD" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biomodels/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/biomodels/BIOMD0000000048" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biomodels.db" + } + }, + { + "@id": "https://bioregistry.io/registry/phenx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PhenX Toolkit" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/PHENX" }, { - "@id": "https://bioregistry.io/registry/kegg.ligand" + "@id": "https://fairsharing.org/FAIRsharing.y5jcwa" }, { - "@id": "https://bioregistry.io/registry/dc_cl" + "@id": "https://bioportal.bioontology.org/ontologies/PHENX" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "environmental science" }, { - "@id": "https://bioregistry.io/registry/genpept" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/genedb" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/bams" + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.phenxtoolkit.org/" + }, + "https://bioregistry.io/schema/#0000005": "130502", + "https://bioregistry.io/schema/#0000006": "https://www.phenxtoolkit.org/protocols/view/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/PHENX/16/phenx.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N8723ec61d20e406aa41e6b7e1d2ee765" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "phenxtoolkit" + }, + "https://bioregistry.io/schema/#0000024": "https://www.phenxtoolkit.org/protocols/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.phenxtoolkit.org/protocols/view/130502" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "phenx" + } + }, + { + "@id": "_:N8723ec61d20e406aa41e6b7e1d2ee765", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PhenX Admin" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "yingqin@rti.org" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/taxrank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0001-9114-8737", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Melissa Haendel" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "haendel@ohsu.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/glycomedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GlycomeDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.re3data.org/repository/r3d100011527" }, { - "@id": "https://bioregistry.io/registry/zeco" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYCOMEDB" }, { - "@id": "https://bioregistry.io/registry/multicellds.collection" + "@id": "http://edamontology.org/data_2664" }, { - "@id": "https://bioregistry.io/registry/biominder" + "@id": "https://registry.bio2kg.org/resource/glycomedb" }, { - "@id": "https://bioregistry.io/registry/probonto" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glycomedb" }, { - "@id": "https://bioregistry.io/registry/bcio" + "@id": "https://registry.identifiers.org/registry/glycomedb" }, { - "@id": "https://bioregistry.io/registry/umbbd.rule" + "@id": "https://fairsharing.org/FAIRsharing.k5k0yh" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "molecules" }, { - "@id": "https://bioregistry.io/registry/dsm5" + "@value": "small molecules" }, { - "@id": "https://bioregistry.io/registry/isni" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/erv" + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://glytoucan.org/" + }, + "https://bioregistry.io/schema/#0000005": "G77500AY", + "https://bioregistry.io/schema/#0000006": "https://glytoucan.org/Structures/Glycans/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/glytoucan" + }, + "https://bioregistry.io/schema/#0000024": "https://glytoucan.org/Structures/Glycans/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://glytoucan.org/Structures/Glycans/G77500AY" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "glycomedb" + } + }, + { + "@id": "http://www.ontobee.org/ontology/UPHENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/edam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/gorel", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GO Relations" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL" }, { - "@id": "https://bioregistry.io/registry/sdis" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://geneontology.org/docs/ontology-relations/" + }, + "https://bioregistry.io/schema/#0000005": "0002005", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GOREL_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GOREL_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GOREL_0002005" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gorel" + } + }, + { + "@id": "https://registry.identifiers.org/registry/erv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/gpcrdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "G protein-coupled receptor database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.e4n3an" }, { - "@id": "https://bioregistry.io/registry/zfs" + "@id": "https://registry.bio2kg.org/resource/gpcrdb" }, { - "@id": "https://bioregistry.io/registry/vmc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpcrdb" }, { - "@id": "https://bioregistry.io/registry/biopixie" + "@id": "https://registry.identifiers.org/registry/gpcrdb" }, { - "@id": "https://bioregistry.io/registry/bspo" + "@id": "https://www.uniprot.org/database/DB-0038" }, { - "@id": "https://bioregistry.io/registry/emea" + "@id": "https://bioregistry.io/metaregistry/biocontext/GPCRDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "small molecule" }, { - "@id": "https://bioregistry.io/registry/tahh" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/fix" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/goa" + "@value": "molecular biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.gpcrdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "RL3R1_HUMAN", + "https://bioregistry.io/schema/#0000006": "https://gpcrdb.org/protein/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4299-7561" + }, + "https://bioregistry.io/schema/#0000024": "https://gpcrdb.org/protein/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://gpcrdb.org/protein/RL3R1_HUMAN" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gpcrdb" + } + }, + { + "@id": "https://bioregistry.io/registry/bams", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Brain Architecture Knowledge Management System Neuroanatomical Ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bams1.org" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000029": { + "@value": "bams" + } + }, + { + "@id": "https://bioregistry.io/registry/datanator", + "http://purl.org/dc/terms/hasPart": [ + { + "@id": "https://bioregistry.io/registry/datanator.metabolite" }, { - "@id": "https://bioregistry.io/registry/cgsc" + "@id": "https://bioregistry.io/registry/datanator.gene" + } + ] + }, + { + "@id": "https://registry.bio2kg.org/resource/bind", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/macie", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/xenbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Xenbase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.uniprot.org/database/DB-0129" }, { - "@id": "https://bioregistry.io/registry/alzforum.mutation" + "@id": "https://www.re3data.org/repository/r3d100011331" }, { - "@id": "https://bioregistry.io/registry/prints" + "@id": "https://registry.identifiers.org/registry/xenbase" }, { - "@id": "https://bioregistry.io/registry/mediadive.ingredient" + "@id": "https://fairsharing.org/FAIRsharing.jrv6wj" }, { - "@id": "https://bioregistry.io/registry/apollosv" + "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase" }, { - "@id": "https://bioregistry.io/registry/interlex" + "@id": "http://edamontology.org/data_2738" }, { - "@id": "https://bioregistry.io/registry/reaxys" + "@id": "https://registry.bio2kg.org/resource/xenbase" }, { - "@id": "https://bioregistry.io/registry/sisu" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase" }, { - "@id": "https://bioregistry.io/registry/dggr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/xenbase" }, { - "@id": "https://bioregistry.io/registry/obo" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase" }, { - "@id": "https://bioregistry.io/registry/jws" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "functional genomics" }, { - "@id": "https://bioregistry.io/registry/lbo" + "@value": "expression" }, { - "@id": "https://bioregistry.io/registry/oboinowl" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/bitbucket" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/nist" + "@value": "proteomics" }, { - "@id": "https://bioregistry.io/registry/kegg.pathway" + "@value": "developmental biology" }, { - "@id": "https://bioregistry.io/registry/lipro" + "@value": "cell biology" }, { - "@id": "https://bioregistry.io/registry/go.resource" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/bcgo" + "@value": "genetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.xenbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "XB-GENE-922462", + "https://bioregistry.io/schema/#0000006": "https://www.xenbase.org/entry/$1", + "https://bioregistry.io/schema/#0000008": "^XB\\-\\w+\\-\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2340-5356" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "Xenbase" + }, + "https://bioregistry.io/schema/#0000024": "https://www.xenbase.org/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.xenbase.org/entry/XB-GENE-922462" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "xenbase" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/tair.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ncbidrs", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kpbna7", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbsnp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/metanetx.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MetaNetX reaction" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/METANETX.REACTION" }, { - "@id": "https://bioregistry.io/registry/fbtc" + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION" }, { - "@id": "https://bioregistry.io/registry/exac.gene" + "@id": "https://registry.identifiers.org/registry/metanetx.reaction" }, { - "@id": "https://bioregistry.io/registry/epo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.metanetx.org/" + }, + "https://bioregistry.io/schema/#0000005": "MNXR101574", + "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/equa_info/$1", + "https://bioregistry.io/schema/#0000008": "^(MNXR\\d+|EMPTY)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/equa_info/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.metanetx.org/equa_info/MNXR101574" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metanetx.reaction" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mipmod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/uspto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rfam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/icdc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Integrated Canine Data Commons" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://fairsharing.org/FAIRsharing.d95034" }, { - "@id": "https://bioregistry.io/registry/addexbio" + "@id": "https://www.re3data.org/repository/r3d100010405" }, { - "@id": "https://bioregistry.io/registry/mw.project" + "@id": "https://registry.identifiers.org/registry/icdc" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "meteorology" }, { - "@id": "https://bioregistry.io/registry/nxr" + "@value": "oceanography" }, { - "@id": "https://bioregistry.io/registry/fsnp" + "@value": "remote sensing" }, { - "@id": "https://bioregistry.io/registry/planp" + "@value": "social science" }, { - "@id": "https://bioregistry.io/registry/wos" + "@value": "earth science" }, { - "@id": "https://bioregistry.io/registry/miro" + "@value": "atmospheric science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://caninecommons.cancer.gov/#/" + }, + "https://bioregistry.io/schema/#0000005": "000009", + "https://bioregistry.io/schema/#0000006": "https://caninecommons.cancer.gov/#/study/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7815-151X" + }, + "https://bioregistry.io/schema/#0000024": "https://caninecommons.cancer.gov/#/study/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://caninecommons.cancer.gov/#/study/000009" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "icdc" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4qyf0f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.y9x8wk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://registry.identifiers.org/registry/topfind", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://orcid.org/0000-0001-7542-0286", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Egon Willighagen" + }, + "http://xmlns.com/foaf/0.1/mbox": [ + { + "@value": "egon.willighagen@maastrichtuniversity.nl" }, { - "@id": "https://bioregistry.io/registry/genepio" + "@value": "egon.willighagen@gmail.com" + } + ] + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://edamontology.org/data_2658", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nbn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/dcterms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.genome", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG Genome is a collection of organisms whose genomes have been completely sequenced.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/novus" + "@id": "https://bioregistry.io/registry/kegg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Genome" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.identifiers.org/registry/kegg.genome" }, { - "@id": "https://bioregistry.io/registry/dlxc" + "@id": "https://registry.bio2kg.org/resource/kegg.genome" }, { - "@id": "https://bioregistry.io/registry/biocatalogue.service" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GENOME" }, { - "@id": "https://bioregistry.io/registry/ogms" + "@id": "http://www.wikidata.org/entity/P665" }, { - "@id": "https://bioregistry.io/registry/pharmgkb.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.genome" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.genome.jp/kegg/catalog/org_list.html" + }, + "https://bioregistry.io/schema/#0000005": "T06648", + "https://bioregistry.io/schema/#0000006": "http://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^(T0\\d+|\\w{3,5})$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "kegg_genomes" }, { - "@id": "https://bioregistry.io/registry/mlc" + "@value": "kegg_genome" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.kegg.jp/entry/T06648" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.genome" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.69", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/registry/co_341", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pigeonpea ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341" }, { - "@id": "https://bioregistry.io/registry/xao" + "@id": "https://cropontology.org/ontology/CO_341" }, { - "@id": "https://bioregistry.io/registry/npo" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_341" }, { - "@id": "https://bioregistry.io/registry/myco.marinum" + "@id": "https://fairsharing.org/FAIRsharing.ehe3yp" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/emdb" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/tgma" + "@value": "agriculture" }, { - "@id": "https://bioregistry.io/registry/orphanet.ordo" + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_341/Pigeonpea" + }, + "https://bioregistry.io/schema/#0000005": "0000140", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_341:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_341/Pigeonpea/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6020-5919" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_341:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_341:0000140" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_341" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEFAM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/T4FS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDDRA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/INO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/DTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/OMIABIS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.g7b4rj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cgsc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-5898-1820", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/voc4cat" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Linke" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "David.Linke@catalysis.de" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/RXNO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dx30m8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cellosaurus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/taxon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/genpept", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/fyler", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A hierarchical classification of congenital heart disease ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fyler" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.elsevier.com/books/nadas-pediatric-cardiology/9781416023906" + }, + "https://bioregistry.io/schema/#0000005": "4447", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "fyler" + } + }, + { + "@id": "https://orcid.org/0000-0002-8380-5247", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Elspeth Bruford" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "elspeth@genenames.org" + } + }, + { + "@id": "https://registry.identifiers.org/registry/umbbd.reaction", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/mba", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the mouse brain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mouse Brain Atlas" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioportal.bioontology.org/ontologies/ABA-AMB" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mouse.brain-map.org" + }, + "https://bioregistry.io/schema/#0000005": "688", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/mba/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-mba.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Na0f17686c21a4cc9adb495d45d340149" + }, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/mba/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/mba/688" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mba" + } + }, + { + "@id": "_:Na0f17686c21a4cc9adb495d45d340149", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Allen Institute for Brain Science" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "chinhda@alleninstitute.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.insertion", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7c683b", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.na5xp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/COSMIC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3636", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/echobase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/cath.superfamily", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/cath" }, { - "@id": "https://bioregistry.io/registry/fplx" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CATH superfamily" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/upa" + "@id": "https://bioregistry.io/metaregistry/biocontext/CATH.SUPERFAMILY" }, { - "@id": "https://bioregistry.io/registry/epd" + "@id": "https://registry.identifiers.org/registry/cath.superfamily" }, { - "@id": "https://bioregistry.io/registry/lonza" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cath.superfamily" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cathdb.info/" + }, + "https://bioregistry.io/schema/#0000005": "1.10.10.200", + "https://bioregistry.io/schema/#0000006": "http://www.cathdb.info/cathnode/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.cathdb.info/cathnode/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.cathdb.info/cathnode/1.10.10.200" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cath.superfamily" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0042", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/go.resource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database-specific registry supporting curation in the Gene Ontology", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Ontology Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://geneontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "CHEBI", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/go/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/go/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/metaregistry/go/CHEBI" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "go.resource" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ordb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/swissregulon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/APO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/DIDEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/paleodb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Paleobiology Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/idog" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paleodb" }, { - "@id": "https://bioregistry.io/registry/norine" + "@id": "https://registry.identifiers.org/registry/paleodb" }, { - "@id": "https://bioregistry.io/registry/emap" + "@id": "https://bioregistry.io/metaregistry/biocontext/PALEODB" }, { - "@id": "https://bioregistry.io/registry/sharkipedia.trend" - }, + "@id": "https://registry.bio2kg.org/resource/paleodb" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "taxonomy" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://paleodb.org/" + }, + "https://bioregistry.io/schema/#0000005": "83088", + "https://bioregistry.io/schema/#0000006": "http://fossilworks.org/?a=taxonInfo&taxon_no=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://fossilworks.org/?a=taxonInfo&taxon_no=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://fossilworks.org/?a=taxonInfo&taxon_no=83088" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "paleodb" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/epio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FBdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://edamontology.org/data_1002", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qp211a", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/FOBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OGSF", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/uberon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011478", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/idoden", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology for dengue fever.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dengue Fever Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/peroxibase" + "@id": "https://fairsharing.org/FAIRsharing.askzq4" }, { - "@id": "https://bioregistry.io/registry/arachnoserver" + "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" }, { - "@id": "https://bioregistry.io/registry/myco.lepra" - }, + "@id": "http://aber-owl.net/ontology/IDODEN" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/splicenest" + "@value": "medicine" }, { - "@id": "https://bioregistry.io/registry/iao" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bioportal.bioontology.org/ontologies/IDODEN" + }, + "https://bioregistry.io/schema/#0000005": "0003463", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/ontology/IDODEN_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/IDODEN/6/idoden.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0719-3485" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/ontology/IDODEN_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.bioontology.org/ontology/IDODEN_0003463" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "idoden" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/stitch", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/corrdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CorrDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/multicellds" + "@id": "https://fairsharing.org/FAIRsharing.IziuCK" }, { - "@id": "https://bioregistry.io/registry/bigg.metabolite" + "@id": "https://www.re3data.org/repository/r3d100011496" }, { - "@id": "https://bioregistry.io/registry/cemo" - }, + "@id": "https://registry.identifiers.org/registry/corrdb" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/gramene.growthstage" + "@value": "animal genetics" }, { - "@id": "https://bioregistry.io/registry/uo" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/proglyc" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/registry/4dn.biosource" - }, + "@value": "systems biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.animalgenome.org" + }, + "https://bioregistry.io/schema/#0000005": "37232", + "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6704-7538" + }, + "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:37232" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "corrdb" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/UBERON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/phipo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/do", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wb.rnai", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/disprot", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/disprot.region" + }, + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://disprot.github.io/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DisProt" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/kegg.module" + "@id": "https://fairsharing.org/FAIRsharing.dt9z89" }, { - "@id": "https://bioregistry.io/registry/ecocyc" + "@id": "https://bioregistry.io/metaregistry/biocontext/DISPROT" }, { - "@id": "https://bioregistry.io/registry/ctis" + "@id": "https://www.re3data.org/repository/r3d100010561" }, { - "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/disprot" }, { - "@id": "https://bioregistry.io/registry/door" + "@id": "https://www.uniprot.org/database/DB-0017" }, { - "@id": "https://bioregistry.io/registry/nlx.qual" + "@id": "https://registry.bio2kg.org/resource/disprot" }, { - "@id": "https://bioregistry.io/registry/vfdb.gene" + "@id": "http://edamontology.org/data_2723" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://registry.identifiers.org/registry/disprot" }, { - "@id": "https://bioregistry.io/registry/poro" - }, + "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mfoem" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/envo" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/fbol" + "@value": "structural biology" }, { - "@id": "https://bioregistry.io/registry/fobi" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/glygen" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://disprot.org/" + }, + "https://bioregistry.io/schema/#0000005": "DP00003", + "https://bioregistry.io/schema/#0000006": "https://disprot.org/$1", + "https://bioregistry.io/schema/#0000008": "^DP\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4525-7793" + }, + "https://bioregistry.io/schema/#0000024": "https://disprot.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://disprot.org/DP00003" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "disprot" + } + }, + { + "@id": "http://edamontology.org/data_2628", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/issn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IDOMAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/emolecules", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Catalog of purchasable reagents and building blocks", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Reaxys eMolecules" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ccrid" + "@value": "reagents" }, { - "@id": "https://bioregistry.io/registry/ebisc" + "@value": "vendor" }, { - "@id": "https://bioregistry.io/registry/colao" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://reaxys.emolecules.com" + }, + "https://bioregistry.io/schema/#0000005": "491187", + "https://bioregistry.io/schema/#0000006": "https://reaxys.emolecules.com/cgi-bin/more?vid=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://reaxys.emolecules.com/cgi-bin/more?vid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://reaxys.emolecules.com/cgi-bin/more?vid=491187" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "emolecules" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ONTOAVIDA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/asap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgnify.samp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/wbbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_336", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kbz5jh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3329", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5rb3fk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TOL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PubChem", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PLANP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/world2dpage", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.tx95wa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/TIME", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HGMD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SWO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.jrv6wj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P686", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0002-6421-1080", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Narcis Fernandez-Fuentes" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "narcis.fernandez@gmail.com" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/cco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CDAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/stitch", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000405", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cheminf" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MINT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/stap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/scholia.resource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A frontend to Wikidata", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Scholia Registry" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/nlx.res" + "@value": "registry" }, { - "@id": "https://bioregistry.io/registry/upheno" - }, + "@value": "wikidata" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://scholia.toolforge.org/" + }, + "https://bioregistry.io/schema/#0000005": "doi", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/metaregistry/scholia/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/metaregistry/scholia/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/metaregistry/scholia/doi" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "scholia.resource" + } + }, + { + "@id": "https://bioregistry.io/registry/hdl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Handle" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.0b7e54" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.handle.net/" + }, + "https://bioregistry.io/schema/#0000005": "2381/12775", + "https://bioregistry.io/schema/#0000006": "http://hdl.handle.net/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+/.+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "handle" + }, + "https://bioregistry.io/schema/#0000024": "http://hdl.handle.net/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://hdl.handle.net/2381/12775" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hdl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P3088", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.STRESSOR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/nlx.qual", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO).", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/beetlebase" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.antibody" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Qualities" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/oarcs" + "@value": "qualities" }, { - "@id": "https://bioregistry.io/registry/ribocentre" - }, + "@value": "dispositions" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "100810", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXQUAL" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_qual_100810" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.qual" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmrrc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hpm.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/jcggdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Japan Consortium for Glycobiology and Glycotechnology Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dbvar.study" + "@id": "https://registry.identifiers.org/registry/jcggdb" }, { - "@id": "https://bioregistry.io/registry/mesh" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCGGDB" }, { - "@id": "https://bioregistry.io/registry/dragondb.locus" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcggdb" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://jcggdb.jp/index_en.html" + }, + "https://bioregistry.io/schema/#0000005": "JCGG-STR008690", + "https://bioregistry.io/schema/#0000006": "http://jcggdb.jp/idb/jcggdb/$1", + "https://bioregistry.io/schema/#0000008": "^JCGG-STR\\d{6}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://jcggdb.jp/idb/jcggdb/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://jcggdb.jp/idb/jcggdb/JCGG-STR008690" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "jcggdb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/Xenbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://aber-owl.net/ontology/MPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/ncats.bioplanet", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Center for Advancing Translation Sciences BioPlanet" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ncats.bioplanet" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://tripod.nih.gov/bioplanet/" + }, + "https://bioregistry.io/schema/#0000005": "3", + "https://bioregistry.io/schema/#0000006": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8886-8311" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ncats.bioplanet" + } + }, + { + "@id": "https://registry.identifiers.org/registry/insdc.sra", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/caro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://orcid.org/0000-0002-6497-2883", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Blake A Sweeney" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bsweeney@ebi.ac.uk" + } + }, + { + "@id": "https://orcid.org/0000-0003-4694-3883", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Paolo Romano" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "paolo.romano@hsanmartino.it" + } + }, + { + "@id": "https://registry.identifiers.org/registry/viaf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://edamontology.org/data_1035", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/registry/re3data", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "re3data" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/orth" + "@id": "https://bartoc.org/en/node/822" }, { - "@id": "https://bioregistry.io/registry/treefam" - }, + "@id": "https://registry.identifiers.org/registry/re3data" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://datacite.org" + }, + "https://bioregistry.io/schema/#0000005": "r3d100010772", + "https://bioregistry.io/schema/#0000006": "https://www.re3data.org/repository/$1", + "https://bioregistry.io/schema/#0000008": "^r3d\\d{9,9}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.re3data.org/repository/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.re3data.org/repository/r3d100010772" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/itmctr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Traditional Medicine Clinical Trial Registry" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://itmctr.ccebtcm.org.cn" + }, + "https://bioregistry.io/schema/#0000005": "ITMCTR2023000002", + "https://bioregistry.io/schema/#0000008": "^ITMCTR\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "itmctr" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/mycobank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/cdd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Conserved Domain Database at NCBI" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/clingene" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD" }, { - "@id": "https://bioregistry.io/registry/sdgio" + "@id": "https://www.uniprot.org/database/DB-0214" }, { - "@id": "https://bioregistry.io/registry/uniprot.chain" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD" }, { - "@id": "https://bioregistry.io/registry/unite" + "@id": "https://registry.bio2kg.org/resource/cdd" }, { - "@id": "https://bioregistry.io/registry/hp" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd" }, { - "@id": "https://bioregistry.io/registry/biomodels.kisao" + "@id": "https://registry.identifiers.org/registry/cdd" }, { - "@id": "https://bioregistry.io/registry/drugbank.condition" + "@id": "https://www.re3data.org/repository/r3d100012041" }, { - "@id": "https://bioregistry.io/registry/ensembl.bacteria" + "@id": "http://edamontology.org/data_2666" }, { - "@id": "https://bioregistry.io/registry/clao" + "@id": "https://fairsharing.org/FAIRsharing.ea287c" }, { - "@id": "https://bioregistry.io/registry/pato" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/CDD" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/edam.topic" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/stitch" + "@value": "earth science" }, { - "@id": "https://bioregistry.io/registry/rgd" + "@value": "geology" }, { - "@id": "https://bioregistry.io/registry/scretf" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd" + }, + "https://bioregistry.io/schema/#0000005": "cd00400", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1", + "https://bioregistry.io/schema/#0000008": "^(cd)?\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00400" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cdd" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q47I0t", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ga4ghdos", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/eagle-i", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.cwx04e", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/prosite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PROSITE" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mirbase.mature" + "@id": "https://registry.bio2kg.org/resource/prosite" }, { - "@id": "https://bioregistry.io/registry/agilent.probe" + "@id": "https://bioregistry.io/metaregistry/go/resolve/Prosite" }, { - "@id": "https://bioregistry.io/registry/rxnorm" + "@id": "https://registry.identifiers.org/registry/prosite" }, { - "@id": "https://bioregistry.io/registry/ado" + "@id": "https://www.uniprot.org/database/DB-0084" }, { - "@id": "https://bioregistry.io/registry/cls" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prosite" }, { - "@id": "https://bioregistry.io/registry/swo" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROSITE" }, { - "@id": "https://bioregistry.io/registry/go.ref" + "@id": "https://fairsharing.org/FAIRsharing.vwc6bd" }, { - "@id": "https://bioregistry.io/registry/pgx" - }, + "@id": "http://www.wikidata.org/entity/P4355" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/oba" + "@value": "structure" }, { - "@id": "https://bioregistry.io/registry/fbbi" + "@value": "biology" }, { - "@id": "https://bioregistry.io/registry/rouge" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.expasy.org/prosite/" + }, + "https://bioregistry.io/schema/#0000005": "PS00001", + "https://bioregistry.io/schema/#0000006": "https://prosite.expasy.org/$1", + "https://bioregistry.io/schema/#0000008": "^PS\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://prosite.expasy.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://prosite.expasy.org/PS00001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "prosite" + } + }, + { + "@id": "https://orcid.org/0000-0002-9713-9994", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mike Tyers" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "md.tyers@umontreal.ca" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/BRENDA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/dlxb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/linkml" + "@id": "https://bioregistry.io/registry/dlx" }, { - "@id": "https://bioregistry.io/registry/nsf.award" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Linear double stranded DNA sequences" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/dlxb" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://doulix.com" + }, + "https://bioregistry.io/schema/#0000005": "6VDC956", + "https://bioregistry.io/schema/#0000006": "https://doulix.com/biomodules/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z0-9]{6,7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://doulix.com/biomodules/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://doulix.com/biomodules/6VDC956" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dlxb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecyano.entity", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/swissmodel", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/PCL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/imgt.hla", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/rex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/validatordb" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://bioregistry.io/registry/datacite" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Physico-chemical process" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/genefarm" + "@id": "https://bioregistry.io/metaregistry/biocontext/REX" }, { - "@id": "https://bioregistry.io/registry/pgdso" + "@id": "https://bioportal.bioontology.org/ontologies/REX" }, { - "@id": "https://bioregistry.io/registry/co_324" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex" }, { - "@id": "https://bioregistry.io/registry/umls.aui" + "@id": "https://www.obofoundry.org/ontology/rex" }, { - "@id": "https://bioregistry.io/registry/hoip" + "@id": "https://fairsharing.org/FAIRsharing.g0a7s0" }, { - "@id": "https://bioregistry.io/registry/unists" + "@id": "http://www.ontobee.org/ontology/REX" }, { - "@id": "https://bioregistry.io/registry/zp" + "@id": "http://aber-owl.net/ontology/REX" }, { - "@id": "https://bioregistry.io/registry/bacmap.map" - }, + "@id": "https://registry.bio2kg.org/resource/rex" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/uniprot.journal" + "@value": "biochemistry" }, { - "@id": "https://bioregistry.io/registry/ordb" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/covid19" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/gard" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/co_356" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/chebi/" + }, + "https://bioregistry.io/schema/#0000005": "0000512", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/REX_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/rex.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N8d2f6d39f29d41e38c577baad90b69f9" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/REX_", + "https://bioregistry.io/schema/#0000029": { + "@value": "rex" + } + }, + { + "@id": "_:N8d2f6d39f29d41e38c577baad90b69f9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chebi Administrators" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "chebi-help@ebi.ac.uk" + } + }, + { + "@id": "https://orcid.org/0000-0001-8149-5890", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Robert Hoehndorf" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "robert.hoehndorf@kaust.edu.sa" + } + }, + { + "@id": "https://bioregistry.io/registry/neuronames", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NeuroNames" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P4394" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://braininfo.rprc.washington.edu/" + }, + "https://bioregistry.io/schema/#0000005": "268", + "https://bioregistry.io/schema/#0000006": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "neuroname" + }, + "https://bioregistry.io/schema/#0000024": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=268" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "neuronames" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pubchem.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sider.effect", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ad9d85", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/proco", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikipathways", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/elm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AUTDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xn3pb3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9te3ev", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tcdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012197", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/estdab", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "European Searchable Tumour Line Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ESTDAB" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/ipd/estdab/" + }, + "https://bioregistry.io/schema/#0000005": "046", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1", + "https://bioregistry.io/schema/#0000008": "^\\d{3}$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-046" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "estdab" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/WBLS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012828", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bartoc.org/en/node/576", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GABI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/co_331", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sweet Potato ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nsc" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_331" }, { - "@id": "https://bioregistry.io/registry/gateway" + "@id": "https://cropontology.org/ontology/CO_331" }, { - "@id": "https://bioregistry.io/registry/minid" + "@id": "https://fairsharing.org/FAIRsharing.4g5qcw" }, { - "@id": "https://bioregistry.io/registry/sibo" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ncro" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/nif.cell" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/aftol.taxonomy" + "@value": "agriculture" }, { - "@id": "https://bioregistry.io/registry/gpcrdb" - }, + "@value": "botany" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato" + }, + "https://bioregistry.io/schema/#0000005": "0000088", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_331:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_331/Sweet%20Potato/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0595-5271" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_331:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_331:0000088" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_331" + } + }, + { + "@id": "https://bioregistry.io/registry/mediadive.solution", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MediaDive Solution" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mediadive.dsmz.de/solutions" + }, + "https://bioregistry.io/schema/#0000005": "S6", + "https://bioregistry.io/schema/#0000006": "https://mediadive.dsmz.de/solutions/$1", + "https://bioregistry.io/schema/#0000008": "^S\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3909-7201" + }, + "https://bioregistry.io/schema/#0000024": "https://mediadive.dsmz.de/solutions/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://mediadive.dsmz.de/solutions/S6" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mediadive.solution" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vcell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/exac.transcript", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "ExAC Transcript" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ogi" + "@id": "https://registry.identifiers.org/registry/exac.transcript" }, { - "@id": "https://bioregistry.io/registry/hsdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.TRANSCRIPT" }, { - "@id": "https://bioregistry.io/registry/brenda" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/exac.transcript" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://exac.broadinstitute.org/" + }, + "https://bioregistry.io/schema/#0000005": "ENST00000407236", + "https://bioregistry.io/schema/#0000006": "http://exac.broadinstitute.org/transcript/$1", + "https://bioregistry.io/schema/#0000008": "^ENST\\d{11}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://exac.broadinstitute.org/transcript/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://exac.broadinstitute.org/transcript/ENST00000407236" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "exac.transcript" + } + }, + { + "@id": "https://registry.identifiers.org/registry/geo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hzdzq8", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/olatdv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Life cycle stages for Medaka", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/developmental-stage-ontologies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Medaka Developmental Stages" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/flybase" + "@id": "http://www.ontobee.org/ontology/OlatDv" }, { - "@id": "https://bioregistry.io/registry/hpscreg" + "@id": "http://aber-owl.net/ontology/OLATDV" }, { - "@id": "https://bioregistry.io/registry/obi" + "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV" }, { - "@id": "https://bioregistry.io/registry/homd.seq" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv" }, { - "@id": "https://bioregistry.io/registry/niaid.chemdb" + "@id": "https://www.obofoundry.org/ontology/olatdv" }, { - "@id": "https://bioregistry.io/registry/hepro" + "@id": "https://bioportal.bioontology.org/ontologies/OLATDV" }, { - "@id": "https://bioregistry.io/registry/omo" - }, + "@id": "https://fairsharing.org/FAIRsharing.c86z66" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/bbtp" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/foaf" + "@value": "developmental biology" }, { - "@id": "https://bioregistry.io/registry/perkinelmer" + "@value": "aquaculture" }, { - "@id": "https://bioregistry.io/registry/oclc" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/viralzone" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/OlatDv" + }, + "https://bioregistry.io/schema/#0000005": "0000210", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OlatDv_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/olatdv.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9415-5104" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OlatDv_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OlatDv_0000210" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "olatdv" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/jcsd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/kegg.glycan", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/cmf" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/asrp" - }, + "@id": "https://bioregistry.io/registry/kegg" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "KEGG Glycan" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/wicell" + "@id": "https://registry.bio2kg.org/resource/kegg.glycan" }, { - "@id": "https://bioregistry.io/registry/ttd.drug" + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.GLYCAN" }, { - "@id": "https://bioregistry.io/registry/ctcae" + "@id": "https://registry.identifiers.org/registry/kegg.glycan" }, { - "@id": "https://bioregistry.io/registry/nihreporter.project" + "@id": "http://edamontology.org/data_2613" }, { - "@id": "https://bioregistry.io/registry/gold.meta" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.glycan" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "small molecule" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.genome.jp/kegg/glycan/" + }, + "https://bioregistry.io/schema/#0000005": "G00123", + "https://bioregistry.io/schema/#0000006": "https://www.kegg.jp/entry/$1", + "https://bioregistry.io/schema/#0000008": "^G\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.kegg.jp/entry/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.kegg.jp/entry/G00123" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "kegg.glycan" + } + }, + { + "@id": "https://orcid.org/0000-0003-2787-3955", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jacqueline Campbell" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Jacqueline.Campbell@usda.gov" + } + }, + { + "@id": "https://bioregistry.io/registry/dhba", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the developing human brain", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Developing Human Brain Atlas" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.brainspan.org/" + }, + "https://bioregistry.io/schema/#0000005": "10153", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/dhba/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-dhba.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/dhba/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/dhba/10153" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dhba" + } + }, + { + "@id": "https://bioregistry.io/registry/bind", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Accession number of an entry from the BIND database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BIND accession number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mzspec" + "@id": "http://edamontology.org/data_1129" }, { - "@id": "https://bioregistry.io/registry/hcpcs" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIND" }, { - "@id": "https://bioregistry.io/registry/bdgp.est" - }, + "@id": "https://registry.bio2kg.org/resource/bind" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cmpo" + "@value": "interaction" }, { - "@id": "https://bioregistry.io/registry/broad" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/sio" - }, + "@value": "small molecule" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bind.ca" + }, + "https://bioregistry.io/schema/#0000005": "98346", + "https://bioregistry.io/schema/#0000006": "http://www.bind.ca/Action?identifier=bindid&idsearch=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "http://www.bind.ca/Action?identifier=bindid&idsearch=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bind.ca/Action?identifier=bindid&idsearch=98346" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bind" + } + }, + { + "@id": "https://bioregistry.io/registry/cghdb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line databases/resources", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CGH Data Base" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CGH-DB" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cghtmd.jp/CGHDatabase/index_e.jsp" + }, + "https://bioregistry.io/schema/#0000005": "300165/p13898_2106T", + "https://bioregistry.io/schema/#0000006": "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cghdb:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=300165/p13898_2106T&aid=%t&lang=en" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cghdb" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/INO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vectorbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ctd", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/iedb" + "@id": "https://bioregistry.io/registry/ctd.disease" }, { - "@id": "https://bioregistry.io/registry/hmdb" + "@id": "https://bioregistry.io/registry/ctd.chemical" }, { - "@id": "https://bioregistry.io/registry/pdumdv" - }, + "@id": "https://bioregistry.io/registry/ctd.gene" + } + ] + }, + { + "@id": "http://aber-owl.net/ontology/IAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/iao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/information-artifact-ontology/IAO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Information Artifact Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nhcdr" + "@id": "http://www.ontobee.org/ontology/IAO" }, { - "@id": "https://bioregistry.io/registry/scopus.publication" + "@id": "http://aber-owl.net/ontology/IAO" }, { - "@id": "https://bioregistry.io/registry/noncodev4.rna" + "@id": "https://www.obofoundry.org/ontology/iao" }, { - "@id": "https://bioregistry.io/registry/datanator.reaction" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iao" }, { - "@id": "https://bioregistry.io/registry/time" + "@id": "https://bioportal.bioontology.org/ontologies/IAO" }, { - "@id": "https://bioregistry.io/registry/hc.din" + "@id": "https://bioregistry.io/metaregistry/biocontext/IAO" }, { - "@id": "https://bioregistry.io/registry/minid.test" + "@id": "https://fairsharing.org/FAIRsharing.gq1xtx" }, { - "@id": "https://bioregistry.io/registry/cdd" + "@id": "https://registry.identifiers.org/registry/iao" }, { - "@id": "https://bioregistry.io/registry/splash" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao" }, { - "@id": "https://bioregistry.io/registry/hathitrust" - }, + "@id": "https://bioregistry.io/metaregistry/go/resolve/IAO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/cellrepo" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/antibodyregistry" + "@value": "data management" }, { - "@id": "https://bioregistry.io/registry/kyinno" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/hpa" + "@value": "knowledge and information systems" }, { - "@id": "https://bioregistry.io/registry/p3db.site" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/lcsh" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/information-artifact-ontology/IAO/" + }, + "https://bioregistry.io/schema/#0000005": "0000030", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/IAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/iao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/co_335" + "@id": "https://bioregistry.io/registry/ecocore" }, { - "@id": "https://bioregistry.io/registry/doid" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://bioregistry.io/registry/lotus" + "@id": "https://bioregistry.io/registry/duo" }, { - "@id": "https://bioregistry.io/registry/pdro" + "@id": "https://bioregistry.io/registry/clyh" }, { - "@id": "https://bioregistry.io/registry/drugbank" + "@id": "https://bioregistry.io/registry/pco" }, { - "@id": "https://bioregistry.io/registry/grsdb" + "@id": "https://bioregistry.io/registry/fovt" }, { - "@id": "https://bioregistry.io/registry/ghr" + "@id": "https://bioregistry.io/registry/psdo" }, { - "@id": "https://bioregistry.io/registry/mmusdv" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://bioregistry.io/registry/umbbd.enzyme" + "@id": "https://bioregistry.io/registry/mcro" }, { - "@id": "https://bioregistry.io/registry/vto" + "@id": "https://bioregistry.io/registry/maxo" }, { - "@id": "https://bioregistry.io/registry/oa" + "@id": "https://bioregistry.io/registry/xpo" }, { - "@id": "https://bioregistry.io/registry/storedb.dataset" - }, + "@id": "https://bioregistry.io/registry/labo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2999-0103" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/IAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/IAO_0000030" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iao" + } + }, + { + "@id": "https://orcid.org/0000-0002-1595-3213", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/aeon" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Philip Strömert" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Philip.Stroemert@tib.eu" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_339", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://orcid.org/0000-0001-6466-877X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pol Castellano Escuder" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "polcaes@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPULYEAST", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/cls", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Lines Service" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CLS" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cls.shop/" + }, + "https://bioregistry.io/schema/#0000005": "300108/p3934_A-172", + "https://bioregistry.io/schema/#0000006": "https://cls.shop/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cls.shop/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cls.shop/300108/p3934_A-172" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cls" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vectorbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.eyjkws", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012690", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pid.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/metatlas.reaction", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A subspace of Metabolic Atlas for reactions.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/dbest" + "@id": "https://bioregistry.io/registry/metatlas" }, { - "@id": "https://bioregistry.io/registry/pmr.workspace" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Metabolic Atlas Reaction" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/dpo" + "@value": "reactions" }, { - "@id": "https://bioregistry.io/registry/px" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://metabolicatlas.org" + }, + "https://bioregistry.io/schema/#0000005": "MAR11851", + "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", + "https://bioregistry.io/schema/#0000008": "^MAR\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7753-9042" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAR11851" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metatlas.reaction" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hgnc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mfomd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://edamontology.org/data_2660", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "http://aber-owl.net/ontology/BTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0117", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/cido", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/cido-ontology/cido" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Coronavirus Infectious Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/syoid" + "@id": "https://www.obofoundry.org/ontology/cido" }, { - "@id": "https://bioregistry.io/registry/propreo" + "@id": "http://aber-owl.net/ontology/CIDO" }, { - "@id": "https://bioregistry.io/registry/dev.ga4ghdos" + "@id": "http://www.ontobee.org/ontology/CIDO" }, { - "@id": "https://bioregistry.io/registry/intact.molecule" + "@id": "https://fairsharing.org/FAIRsharing.aVmpKl" }, { - "@id": "https://bioregistry.io/registry/odrl" + "@id": "https://bioportal.bioontology.org/ontologies/CIDO" }, { - "@id": "https://bioregistry.io/registry/oridb.schizo" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/vbrc" + "@value": "epidemiology" }, { - "@id": "https://bioregistry.io/registry/dashr.expression" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/cog.pathway" + "@value": "virology" }, { - "@id": "https://bioregistry.io/registry/cog.category" + "@value": "bioinformatics" }, { - "@id": "https://bioregistry.io/registry/cubedb" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/omia" + "@value": "drug repositioning" }, { - "@id": "https://bioregistry.io/registry/nmr" - }, + "@value": "drug discovery" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/cido-ontology/cido" + }, + "https://bioregistry.io/schema/#0000005": "0000005", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CIDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/CIDO-ontology/cido/raw/master/cido.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CIDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CIDO_0000005" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cido" + } + }, + { + "@id": "https://registry.identifiers.org/registry/repeatsdb.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ido", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012820", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ricegap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000020", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A person" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Person" + }, + "http://www.w3.org/2002/07/owl#equivalentClass": { + "@id": "http://xmlns.com/foaf/0.1/Person" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dff3ef", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GNPIS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7hxxc4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-7509-4801", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioregistry.io/registry/hesa" + "@id": "https://bioregistry.io/registry/nlx.func" }, { - "@id": "https://bioregistry.io/registry/gramene.protein" + "@id": "https://bioregistry.io/registry/nlx.chem" }, { - "@id": "https://bioregistry.io/registry/aop.stressor" + "@id": "https://bioregistry.io/registry/nlx.oen" }, { - "@id": "https://bioregistry.io/registry/pgs" + "@id": "https://bioregistry.io/registry/nlx.qual" }, { - "@id": "https://bioregistry.io/registry/ecyano.entity" + "@id": "https://bioregistry.io/registry/nif.std" }, { - "@id": "https://bioregistry.io/registry/psipar" + "@id": "https://bioregistry.io/registry/nif.ext" }, { - "@id": "https://bioregistry.io/registry/microscope" + "@id": "https://bioregistry.io/registry/nlx.res" }, { - "@id": "https://bioregistry.io/registry/wbphenotype" + "@id": "https://bioregistry.io/registry/nlx.cell" }, { - "@id": "https://bioregistry.io/registry/idoo" + "@id": "https://bioregistry.io/registry/nlx.org" }, { - "@id": "https://bioregistry.io/registry/pazar" + "@id": "https://bioregistry.io/registry/nlx.mol" }, { - "@id": "https://bioregistry.io/registry/subtilist" + "@id": "https://bioregistry.io/registry/nlx.br" }, { - "@id": "https://bioregistry.io/registry/tto" + "@id": "https://bioregistry.io/registry/nlx.inv" }, { - "@id": "https://bioregistry.io/registry/doqcs.model" - }, + "@id": "https://bioregistry.io/registry/nlx.sub" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tom Gillespie" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "tgbugs@gmail.com" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cdao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/scretf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.b1xD9f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BUGBASE.EXPT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FBbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BSPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4229", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://edamontology.org/data_1098", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vbrc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIABIS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/foaf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CHMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/diseaseclass", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Legacy disease classes that later became MONDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Disease Class" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000598", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/diseaseclass/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/obophenotype/human-disease-ontology/raw/master/src/experimental/missing-omc.obo" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/efo" + }, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/diseaseclass/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/diseaseclass/0000598" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "diseaseclass" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ORTHOLOGY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/hog", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Homologous Organ Groups" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bgee.org/bgee/bgee?page=documentation#sectionHomologyRelationships" + }, + "https://bioregistry.io/schema/#0000005": "0000255", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/hog/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "ftp://ftp.bgee.org/general/ontologies/HOG.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/hog/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/hog/0000255" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hog" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/prodom", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0003-4752-543X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fahim Imam" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "smtifahim@gmail.com" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MFOMD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://www.wikidata.org/entity/P675", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/vario", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/napdi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CUBEDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/viaf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4338", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/multicellds.collection", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections).", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/tokue" + "@id": "https://bioregistry.io/registry/multicellds" }, { - "@id": "https://bioregistry.io/registry/bacdive" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MultiCellDS collection" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/scr" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.collection" }, { - "@id": "https://bioregistry.io/registry/ddinter.interaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.COLLECTION" }, { - "@id": "https://bioregistry.io/registry/ipi" - }, + "@id": "https://registry.identifiers.org/registry/multicellds.collection" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://multicellds.org/MultiCellDB.php" + }, + "https://bioregistry.io/schema/#0000005": "MCDS_C_0000000001", + "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", + "https://bioregistry.io/schema/#0000008": "^MCDS_C_[a-zA-Z0-9]{1,10}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://multicellds.org/MultiCellDB/MCDS_C_0000000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "multicellds.collection" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proteomicsdb.peptide", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/umls", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Unified Medical Language System Concept Unique Identifier" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/hgnc.genegroup" + "@id": "http://www.wikidata.org/entity/P2892" }, { - "@id": "https://bioregistry.io/registry/dg.f82a1a" + "@id": "http://edamontology.org/data_1181" }, { - "@id": "https://bioregistry.io/registry/dg.6vts" + "@id": "https://bartoc.org/en/node/20052" }, { - "@id": "https://bioregistry.io/registry/ark" + "@id": "https://registry.identifiers.org/registry/umls" }, { - "@id": "https://bioregistry.io/registry/soybase" + "@id": "https://bioregistry.io/metaregistry/biocontext/UMLS" }, { - "@id": "https://bioregistry.io/registry/sgn" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls" }, { - "@id": "https://bioregistry.io/registry/ubio.namebank" - }, + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.86" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nlm.nih.gov/research/umls" + }, + "https://bioregistry.io/schema/#0000005": "C2584994", + "https://bioregistry.io/schema/#0000006": "http://linkedlifedata.com/resource/umls/id/$1", + "https://bioregistry.io/schema/#0000008": "^C\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/echinobase" + "@value": "UMLS CUI" }, { - "@id": "https://bioregistry.io/registry/atfdb.family" + "@value": "UMLS" }, { - "@id": "https://bioregistry.io/registry/ogg" + "@value": "umls.cui" }, { - "@id": "https://bioregistry.io/registry/ddinter.drug" - }, + "@value": "UMLS_CUI" + } + ], + "https://bioregistry.io/schema/#0000024": "http://linkedlifedata.com/resource/umls/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://linkedlifedata.com/resource/umls/id/C2584994" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "umls" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/one", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.family", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ornaseq", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An application ontology designed to annotate next-generation sequencing experiments performed on RNA.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/safisher/ornaseq" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of RNA Sequencing" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/chembl.target" + "@id": "http://www.ontobee.org/ontology/ORNASEQ" }, { - "@id": "https://bioregistry.io/registry/ideal" + "@id": "https://www.obofoundry.org/ontology/ornaseq" }, { - "@id": "https://bioregistry.io/registry/ecyano.experiment" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq" }, { - "@id": "https://bioregistry.io/registry/odc.tbi" + "@id": "https://bioportal.bioontology.org/ontologies/ORNASEQ" }, { - "@id": "https://bioregistry.io/registry/confident.event" - }, + "@id": "http://aber-owl.net/ontology/ORNASEQ" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/fyeco" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/pubchem.element" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://kim.bio.upenn.edu/software/ornaseq.shtml" + }, + "https://bioregistry.io/schema/#0000005": "0000010", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ORNASEQ_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ornaseq.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8034-7685" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ORNASEQ_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ORNASEQ_0000010" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ornaseq" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.z1czxj", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-9163-5180", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mike Cherry" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cherry@genome.stanford.edu" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ncgh1j", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/nucleotide", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nucleotide" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/nucleotide" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "880798137", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nuccore/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000016": { + "@id": "https://bioregistry.io/registry/insdc" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nuccore/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/nuccore/880798137" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nucleotide" + } + }, + { + "@id": "https://registry.identifiers.org/registry/foodb.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/exac.variant", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/pharmgkb.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PharmGKB Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/babelon" + "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB" }, { - "@id": "https://bioregistry.io/registry/treebase" + "@id": "http://www.wikidata.org/entity/P7001" }, { - "@id": "https://bioregistry.io/registry/fbql" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.GENE" }, { - "@id": "https://bioregistry.io/registry/grin.taxonomy" + "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/registry/foodb.compound" + "@id": "https://www.uniprot.org/database/DB-0074" }, { - "@id": "https://bioregistry.io/registry/edam" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/registry/nlfff" + "@id": "https://bioregistry.io/metaregistry/go/resolve/PharmGKB" }, { - "@id": "https://bioregistry.io/registry/echobase" + "@id": "https://registry.identifiers.org/registry/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/registry/cldb" - }, + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.GENE" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/otl" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/modeldb" + "@value": "pharmacogenomics" }, { - "@id": "https://bioregistry.io/registry/cao" - }, + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pharmgkb.org/" + }, + "https://bioregistry.io/schema/#0000005": "PA131", + "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^PA\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.pharmgkb.org/gene/PA131" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pharmgkb.gene" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oridb.schizo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/wikidata", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/wikidata.property" + }, + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Wikidata" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/chiro" + "@id": "https://semanticscience.org/resource/CHEMINF_000567" }, { - "@id": "https://bioregistry.io/registry/bcrc" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIDATA" }, { - "@id": "https://bioregistry.io/registry/ctri" + "@id": "https://bartoc.org/en/node/1940" }, { - "@id": "https://bioregistry.io/registry/uniprot.ptm" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Wikidata" }, { - "@id": "https://bioregistry.io/registry/cgnc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikidata" }, { - "@id": "https://bioregistry.io/registry/fyler" + "@id": "https://registry.identifiers.org/registry/wikidata" }, { - "@id": "https://bioregistry.io/registry/mfmo" + "@id": "https://fairsharing.org/FAIRsharing.6s749p" }, { - "@id": "https://bioregistry.io/registry/ncbi.resource" - }, + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/co_337" + "@value": "subject agnostic" }, { - "@id": "https://bioregistry.io/registry/co_338" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/matrixdb.association" + "@value": "metabolomics" }, { - "@id": "https://bioregistry.io/registry/venom" + "@value": "proteomics" }, { - "@id": "https://bioregistry.io/registry/chembank" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.wikidata.org/" + }, + "https://bioregistry.io/schema/#0000005": "Q2207226", + "https://bioregistry.io/schema/#0000006": "http://www.wikidata.org/entity/$1", + "https://bioregistry.io/schema/#0000008": "^(Q|P)\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/igsr" + "@value": "wd" }, { - "@id": "https://bioregistry.io/registry/aspgd.locus" - }, + "@value": "WD_Entity" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.wikidata.org/entity/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.wikidata.org/entity/Q2207226" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "wikidata" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ctd.disease", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/AGRKB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dg.4503", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ncbi.assembly", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Assembly" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/bgee.stage" + "@id": "https://registry.identifiers.org/registry/assembly" }, { - "@id": "https://bioregistry.io/registry/rrid" + "@id": "https://www.re3data.org/repository/r3d100012688" }, { - "@id": "https://bioregistry.io/registry/genbank" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/" + }, + "https://bioregistry.io/schema/#0000005": "GCF_000005845.2", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/datasets/genome/$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9_\\.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/datasets/genome/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000005845.2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ncbi.assembly" + } + }, + { + "@id": "https://registry.identifiers.org/registry/protonet.cluster", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.7sfedh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/peptideatlas.dataset", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PeptideAtlas Dataset" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/gexo" + "@id": "https://registry.identifiers.org/registry/peptideatlas.dataset" }, { - "@id": "https://bioregistry.io/registry/proteomicsdb.peptide" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/PASS_Summary" + }, + "https://bioregistry.io/schema/#0000005": "PASS01237", + "https://bioregistry.io/schema/#0000006": "http://www.peptideatlas.org/PASS/$1", + "https://bioregistry.io/schema/#0000008": "^PASS\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.peptideatlas.org/PASS/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.peptideatlas.org/PASS/PASS01237" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "peptideatlas.dataset" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c86z66", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-6601-2165", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioregistry.io/registry/fossilworks.taxon" + "@id": "https://bioregistry.io/registry/jgi.proposal" }, { - "@id": "https://bioregistry.io/registry/cdno" + "@id": "https://bioregistry.io/registry/mediadive.medium" }, { - "@id": "https://bioregistry.io/registry/nlx.br" + "@id": "https://bioregistry.io/registry/mixs" }, { - "@id": "https://bioregistry.io/registry/co_359" + "@id": "https://bioregistry.io/registry/uniprot.arba" }, { - "@id": "https://bioregistry.io/registry/mirbase" + "@id": "https://bioregistry.io/registry/gnps.task" }, { - "@id": "https://bioregistry.io/registry/ngbo" + "@id": "https://bioregistry.io/registry/emsl.project" }, { - "@id": "https://bioregistry.io/registry/credit" + "@id": "https://bioregistry.io/registry/insdc.run" }, { - "@id": "https://bioregistry.io/registry/pride" + "@id": "https://bioregistry.io/registry/wwf.ecoregion" }, { - "@id": "https://bioregistry.io/registry/hpath" - }, + "@id": "https://bioregistry.io/registry/glycosciencesdb" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chris Mungall" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cjmungall@lbl.gov" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/plasmodb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PlasmoDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/img.taxon" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/plasmodb" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.compound" + "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB" }, { - "@id": "https://bioregistry.io/registry/abcd" + "@id": "https://fairsharing.org/FAIRsharing.g4n8sw" }, { - "@id": "https://bioregistry.io/registry/biosimulations" + "@id": "https://registry.identifiers.org/registry/plasmodb" }, { - "@id": "https://bioregistry.io/registry/mmo" + "@id": "https://registry.bio2kg.org/resource/plasmodb" }, { - "@id": "https://bioregistry.io/registry/civic.vgid" + "@id": "https://www.re3data.org/repository/r3d100011569" }, { - "@id": "https://bioregistry.io/registry/prosite" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ApiDB_PlasmoDB" }, { - "@id": "https://bioregistry.io/registry/sdap" - }, + "@id": "https://bioregistry.io/metaregistry/go/resolve/PlasmoDB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mirex" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/aism" + "@value": "infectious disease medicine" }, { - "@id": "https://bioregistry.io/registry/ngl" - }, + "@value": "genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://plasmodb.org/plasmo/" + }, + "https://bioregistry.io/schema/#0000005": "PF11_0344", + "https://bioregistry.io/schema/#0000006": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "ApiDB_PlasmoDB" + }, + "https://bioregistry.io/schema/#0000024": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=PF11_0344" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "plasmodb" + } + }, + { + "@id": "https://bioregistry.io/registry/co_324", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sorghum TDv5 - Oct 2019", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sorghum ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dron" + "@id": "https://fairsharing.org/FAIRsharing.dxx0c" }, { - "@id": "https://bioregistry.io/registry/plana" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324" }, { - "@id": "https://bioregistry.io/registry/bitterdb.rec" + "@id": "https://cropontology.org/ontology/CO_324" }, { - "@id": "https://bioregistry.io/registry/fao" - }, + "@id": "http://agroportal.lirmm.fr/ontologies/CO_324" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/hagr.genage" + "@value": "botany" }, { - "@id": "https://bioregistry.io/registry/worldavatar.kin" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/bioproject" - }, + "@value": "agriculture" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cropontology.org/ontology/CO_324/Sorghum" + }, + "https://bioregistry.io/schema/#0000005": "0000111", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_324:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_324/Sorghum/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N94ef09fe5186469496b5929a73d32bf9" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_324:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_324:0000111" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_324" + } + }, + { + "@id": "_:N94ef09fe5186469496b5929a73d32bf9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/vbo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/ensembl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/aop.relationships" + "@id": "https://bioregistry.io/registry/ensembl.bacteria" }, { - "@id": "https://bioregistry.io/registry/molbase.sheffield" - }, + "@id": "https://bioregistry.io/registry/ensembl.fungi" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ensembl Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/pid.pathway" + "@id": "https://www.uniprot.org/database/DB-0023" }, { - "@id": "https://bioregistry.io/registry/ricenetdb.reaction" + "@id": "http://edamontology.org/data_2610" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ENSEMBL" }, { - "@id": "https://bioregistry.io/registry/cas" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ENSEMBL" }, { - "@id": "https://bioregistry.io/registry/imsr_em" + "@id": "https://registry.bio2kg.org/resource/ensembl" }, { - "@id": "https://bioregistry.io/registry/mgnify.proj" + "@id": "https://registry.identifiers.org/registry/ensembl" }, { - "@id": "https://bioregistry.io/registry/sao" + "@id": "https://fairsharing.org/FAIRsharing.fx0mw7" }, { - "@id": "https://bioregistry.io/registry/trichdb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl" }, { - "@id": "https://bioregistry.io/registry/clinicaltrials" + "@id": "https://www.re3data.org/repository/r3d100010228" }, { - "@id": "https://bioregistry.io/registry/cath.domain" + "@id": "http://www.wikidata.org/entity/P594" }, { - "@id": "https://bioregistry.io/registry/seed.compound" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/inhand" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/massbank" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/massive" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/redfly" - }, + "@value": "comparative genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ensembl.org/" + }, + "https://bioregistry.io/schema/#0000005": "ENSG00000139618", + "https://bioregistry.io/schema/#0000006": "https://www.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "Ensembl" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ensembl.org/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ensembl.org/id/ENSG00000139618" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ensembl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/hancestro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FOODON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-7753-9042", + "http://purl.org/dc/terms/contributor": [ { "@id": "https://bioregistry.io/registry/metatlas.metabolite" }, { - "@id": "https://bioregistry.io/registry/mex" - }, - { - "@id": "https://bioregistry.io/registry/oryzabase.stage" - }, - { - "@id": "https://bioregistry.io/registry/mgnify.analysis" - }, - { - "@id": "https://bioregistry.io/registry/bgee.organ" - }, - { - "@id": "https://bioregistry.io/registry/nlm" - }, - { - "@id": "https://bioregistry.io/registry/agricola" - }, - { - "@id": "https://bioregistry.io/registry/ppr" - }, - { - "@id": "https://bioregistry.io/registry/eccode" + "@id": "https://bioregistry.io/registry/metatlas" }, { - "@id": "https://bioregistry.io/registry/xpo" - }, + "@id": "https://bioregistry.io/registry/metatlas.reaction" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mihail Anton" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mihail.anton@chalmers.se" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://edamontology.org/data_2716", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mipmod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bartoc.org/en/node/720", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://orcid.org/0000-0003-2699-3066", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://bioregistry.io/registry/lncipedia" + "@id": "https://bioregistry.io/registry/fossilworks.taxon" }, { - "@id": "https://bioregistry.io/registry/rism" + "@id": "https://bioregistry.io/registry/col.taiwan" }, { - "@id": "https://bioregistry.io/registry/dc" + "@id": "https://bioregistry.io/registry/otol" }, { - "@id": "https://bioregistry.io/registry/insdc.gca" + "@id": "https://bioregistry.io/registry/noaa" }, { - "@id": "https://bioregistry.io/registry/micro" - }, + "@id": "https://bioregistry.io/registry/fossilworks.journal" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Meghan Balk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "meghan.balk@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/registry/rdo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RGD Disease Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ratmine.mcw.edu/ontology/disease/" + }, + "https://bioregistry.io/schema/#0000005": "9002859", + "https://bioregistry.io/schema/#0000006": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://download.rgd.mcw.edu/pub/data_release/ontology_obo_files/disease/RDO.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#9002859" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rdo" + } + }, + { + "@id": "https://orcid.org/0000-0003-3781-6962", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Meng LIU" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "liumeng94@sjtu.edu.cn" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mint", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.ontobee.org/ontology/SCDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/collection/0000009", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/inaturalist.observation" + "@id": "https://bioregistry.io/registry/snomedct" }, { - "@id": "https://bioregistry.io/registry/glytoucan" + "@id": "https://bioregistry.io/registry/ensembl" }, { - "@id": "https://bioregistry.io/registry/pmr" + "@id": "https://bioregistry.io/registry/cvx" }, { - "@id": "https://bioregistry.io/registry/hagr.gendr" + "@id": "https://bioregistry.io/registry/cpt" }, { - "@id": "https://bioregistry.io/registry/sharkipedia.species" + "@id": "https://bioregistry.io/registry/hl7.v3codesystem" }, { - "@id": "https://bioregistry.io/registry/funderregistry" + "@id": "https://bioregistry.io/registry/refseq" }, { - "@id": "https://bioregistry.io/registry/bdgp.insertion" + "@id": "https://bioregistry.io/registry/lrg" }, { - "@id": "https://bioregistry.io/registry/bioregistry.schema" + "@id": "https://bioregistry.io/registry/omim" }, { - "@id": "https://bioregistry.io/registry/nif.grossanatomy" + "@id": "https://bioregistry.io/registry/ietf.language" }, { - "@id": "https://bioregistry.io/registry/github.pull" + "@id": "https://bioregistry.io/registry/cosmic" }, { - "@id": "https://bioregistry.io/registry/metacyc.compound" + "@id": "https://bioregistry.io/registry/loinc" }, { - "@id": "https://bioregistry.io/registry/dbg2introns" + "@id": "https://bioregistry.io/registry/radlex" }, { - "@id": "https://bioregistry.io/registry/fhir.implementation" + "@id": "https://bioregistry.io/registry/clinicaltrials" }, { - "@id": "https://bioregistry.io/registry/mi" + "@id": "https://bioregistry.io/registry/icd9" }, { - "@id": "https://bioregistry.io/registry/plo" + "@id": "https://bioregistry.io/registry/dicom" }, { - "@id": "https://bioregistry.io/registry/did" + "@id": "https://bioregistry.io/registry/pharmgkb.gene" }, { - "@id": "https://bioregistry.io/registry/insdc" + "@id": "https://bioregistry.io/registry/unii" }, { - "@id": "https://bioregistry.io/registry/cameo" + "@id": "https://bioregistry.io/registry/ncit" }, { - "@id": "https://bioregistry.io/registry/lipidbank" + "@id": "https://bioregistry.io/registry/icd10" }, { - "@id": "https://bioregistry.io/registry/smid" + "@id": "https://bioregistry.io/registry/iso.3166" }, { - "@id": "https://bioregistry.io/registry/rbk" + "@id": "https://bioregistry.io/registry/hgnc" }, { - "@id": "https://bioregistry.io/registry/unii" + "@id": "https://bioregistry.io/registry/nucc.taxonomy" }, { - "@id": "https://bioregistry.io/registry/signor.relation" + "@id": "https://bioregistry.io/registry/ndfrt" }, { - "@id": "https://bioregistry.io/registry/classyfire" + "@id": "https://bioregistry.io/registry/atcc" }, { - "@id": "https://bioregistry.io/registry/yeastintron" + "@id": "https://bioregistry.io/registry/hc.din" }, { - "@id": "https://bioregistry.io/registry/bioportal" + "@id": "https://bioregistry.io/registry/hl7.v2codesystem" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://bioregistry.io/registry/ndc" }, { - "@id": "https://bioregistry.io/registry/exac.variant" + "@id": "https://bioregistry.io/registry/ucum" }, { - "@id": "https://bioregistry.io/registry/dictybase.est" + "@id": "https://bioregistry.io/registry/icf" }, { - "@id": "https://bioregistry.io/registry/vega" + "@id": "https://bioregistry.io/registry/dbsnp" }, { - "@id": "https://bioregistry.io/registry/phenx" + "@id": "https://bioregistry.io/registry/pubmed" }, { - "@id": "https://bioregistry.io/registry/biocarta.pathway" + "@id": "https://bioregistry.io/registry/rxnorm" }, { - "@id": "https://bioregistry.io/registry/oci" + "@id": "https://bioregistry.io/registry/clinvar" }, { - "@id": "https://bioregistry.io/registry/pmc" + "@id": "https://bioregistry.io/registry/hc.npn" }, { - "@id": "https://bioregistry.io/registry/co_333" + "@id": "https://bioregistry.io/registry/dsm5" }, { - "@id": "https://bioregistry.io/registry/pubchem.classification" + "@id": "https://bioregistry.io/registry/so" }, { - "@id": "https://bioregistry.io/registry/flybrain.ndb" - }, + "@id": "https://bioregistry.io/registry/imgt.hla" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FHIR External Terminologies" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0140", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dip", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/asrp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011518", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/mgi", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mouse Genome Informatics" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/to" + "@id": "https://bioregistry.io/metaregistry/biocontext/MGI" }, { - "@id": "https://bioregistry.io/registry/vegbank" + "@id": "https://registry.identifiers.org/registry/mgi" }, { - "@id": "https://bioregistry.io/registry/cio" + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI" }, { - "@id": "https://bioregistry.io/registry/emmo" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/MGI" }, { - "@id": "https://bioregistry.io/registry/lincs.data" + "@id": "https://www.re3data.org/repository/r3d100010266" }, { - "@id": "https://bioregistry.io/registry/ohpi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mgi" }, { - "@id": "https://bioregistry.io/registry/vann" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MGI" }, { - "@id": "https://bioregistry.io/registry/ornaseq" + "@id": "http://edamontology.org/data_3274" }, { - "@id": "https://bioregistry.io/registry/pdb.ligand" + "@id": "https://www.uniprot.org/database/DB-0060" }, { - "@id": "https://bioregistry.io/registry/darc" + "@id": "https://fairsharing.org/FAIRsharing.fcwyhz" }, { - "@id": "https://bioregistry.io/registry/qudt" + "@id": "http://www.wikidata.org/entity/P671" }, { - "@id": "https://bioregistry.io/registry/openalex" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MGI" }, { - "@id": "https://bioregistry.io/registry/sugarbind" - }, + "@id": "https://registry.bio2kg.org/resource/mgi" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mmdb" + "@value": "ontology and terminology" }, { - "@id": "https://bioregistry.io/registry/vt" + "@value": "animal model" }, { - "@id": "https://bioregistry.io/registry/cst" + "@value": "single nucleotide polymorphism" }, { - "@id": "https://bioregistry.io/registry/co_347" + "@value": "genotype" }, { - "@id": "https://bioregistry.io/registry/seinet" + "@value": "data analysis service" }, { - "@id": "https://bioregistry.io/registry/ndex" + "@value": "strain" }, { - "@id": "https://bioregistry.io/registry/kegg.drug" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/pdbsum" + "@value": "sequence" }, { - "@id": "https://bioregistry.io/registry/dbmhc" + "@value": "human health" }, { - "@id": "https://bioregistry.io/registry/ms" + "@value": "expression" }, { - "@id": "https://bioregistry.io/registry/apid.interactions" + "@value": "gold standard" }, { - "@id": "https://bioregistry.io/registry/vbo" + "@value": "function" }, { - "@id": "https://bioregistry.io/registry/metlin" + "@value": "phenotype" }, { - "@id": "https://bioregistry.io/registry/nucc.characteristic" + "@value": "recombinase" }, { - "@id": "https://bioregistry.io/registry/cellosaurus.resource" + "@value": "pathology" }, { - "@id": "https://bioregistry.io/registry/uniref" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/sciflection" + "@value": "molecular neuroanatomy resource" }, { - "@id": "https://bioregistry.io/registry/re3data" + "@value": "model" }, { - "@id": "https://bioregistry.io/registry/reo" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/sepio" + "@value": "gene expression" }, { - "@id": "https://bioregistry.io/registry/loinc" + "@value": "orthology" }, { - "@id": "https://bioregistry.io/registry/fairsharing" + "@value": "human disease" }, { - "@id": "https://bioregistry.io/registry/bioregistry.collection" + "@value": "blast" }, { - "@id": "https://bioregistry.io/registry/gnpis" + "@value": "image" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.dataset" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/arraymap" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/registry/ensembl.fungi" - }, + "@value": "tumor" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.informatics.jax.org/" + }, + "https://bioregistry.io/schema/#0000005": "6017782", + "https://bioregistry.io/schema/#0000006": "http://www.informatics.jax.org/accession/MGI:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/esldb" + "@value": "MGD" }, { - "@id": "https://bioregistry.io/registry/opl" - }, + "@value": "MGI" + } + ], + "https://bioregistry.io/schema/#0000024": "http://www.informatics.jax.org/accession/MGI:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.informatics.jax.org/accession/MGI:6017782" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mgi" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dbd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012385", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/lepao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/loggerhead", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Loggerhead nesting" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/sedml.language" + "@id": "https://bioregistry.io/metaregistry/biocontext/LOGGERHEAD" }, { - "@id": "https://bioregistry.io/registry/oridb.sacch" - }, + "@id": "https://www.obofoundry.org/ontology/loggerhead" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/grid" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/bioregistry" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mesquiteproject.org/ontology/Loggerhead/index.html" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LOGGERHEAD_$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6512-3296" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LOGGERHEAD_", + "https://bioregistry.io/schema/#0000029": { + "@value": "loggerhead" + } + }, + { + "@id": "https://bartoc.org/en/node/1028", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/registry/genetree", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GeneTree" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/leafsnap" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genetree" }, { - "@id": "https://bioregistry.io/registry/shareloc" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENETREE" }, { - "@id": "https://bioregistry.io/registry/panther.family" + "@id": "https://www.uniprot.org/database/DB-0162" }, { - "@id": "https://bioregistry.io/registry/bgee.gene" + "@id": "https://registry.identifiers.org/registry/genetree" }, { - "@id": "https://bioregistry.io/registry/vipr" - }, + "@id": "https://registry.bio2kg.org/resource/genetree" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ricecyc" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/inaturalist.place" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/biro" - }, + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ensembl.org/" + }, + "https://bioregistry.io/schema/#0000005": "ENSGT00550000074763", + "https://bioregistry.io/schema/#0000006": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1", + "https://bioregistry.io/schema/#0000008": "^ENSGT\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=ENSGT00550000074763" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genetree" + } + }, + { + "@id": "https://registry.identifiers.org/registry/corum", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/sisu", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sequencing Initiative Suomi" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/fma" + "@id": "https://fairsharing.org/FAIRsharing.t1a232" }, { - "@id": "https://bioregistry.io/registry/cmo" + "@id": "https://bioregistry.io/metaregistry/biocontext/SISU" }, { - "@id": "https://bioregistry.io/registry/obv" + "@id": "https://registry.identifiers.org/registry/sisu" }, { - "@id": "https://bioregistry.io/registry/nbo" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/rbo" + "@value": "preclinical studies" }, { - "@id": "https://bioregistry.io/registry/knapsack" + "@value": "epidemiology" }, { - "@id": "https://bioregistry.io/registry/co_365" + "@value": "medicine" }, { - "@id": "https://bioregistry.io/registry/msigdb" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/eolife" - }, + "@value": "biomedical science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.sisuproject.fi/" + }, + "https://bioregistry.io/schema/#0000005": "17:41223048", + "https://bioregistry.io/schema/#0000006": "http://search.sisuproject.fi/#/variant/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+:[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3212-7826" + }, + "https://bioregistry.io/schema/#0000024": "http://search.sisuproject.fi/#/variant/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://search.sisuproject.fi/#/variant/17:41223048" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sisu" + } + }, + { + "@id": "https://bioregistry.io/registry/cazy", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Carbohydrate Active EnZYmes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/hcao" + "@id": "https://fairsharing.org/FAIRsharing.ntyq70" }, { - "@id": "https://bioregistry.io/registry/dsm4" + "@id": "https://registry.bio2kg.org/resource/cazy" }, { - "@id": "https://bioregistry.io/registry/vuid" + "@id": "https://bioregistry.io/metaregistry/go/resolve/CAZY" }, { - "@id": "https://bioregistry.io/registry/civic.tid" + "@id": "https://bioregistry.io/metaregistry/biocontext/CAZY" }, { - "@id": "https://bioregistry.io/registry/col.taiwan" + "@id": "https://www.re3data.org/repository/r3d100012321" }, { - "@id": "https://bioregistry.io/registry/fbcv" + "@id": "https://www.uniprot.org/database/DB-0136" }, { - "@id": "https://bioregistry.io/registry/commoncoreontology" + "@id": "https://registry.identifiers.org/registry/cazy" }, { - "@id": "https://bioregistry.io/registry/ncbi.assembly" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cazy" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/clinvar.submitter" + "@value": "glycomics" }, { - "@id": "https://bioregistry.io/registry/cell_model_passport" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/molmovdb" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/inaturalist.taxon" - }, + "@value": "polysaccharide" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cazy.org/" + }, + "https://bioregistry.io/schema/#0000005": "GT10", + "https://bioregistry.io/schema/#0000006": "http://www.cazy.org/$1.html", + "https://bioregistry.io/schema/#0000008": "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cazy:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.cazy.org/GT10.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cazy" + } + }, + { + "@id": "https://bioregistry.io/registry/dermo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Dermatological Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cell_biolabs" + "@id": "https://bioportal.bioontology.org/ontologies/DERMO" }, { - "@id": "https://bioregistry.io/registry/clo" + "@id": "https://fairsharing.org/FAIRsharing.k008w7" }, { - "@id": "https://bioregistry.io/registry/lgai.cede" - }, + "@id": "http://aber-owl.net/ontology/DERMO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/peco" + "@value": "dermatology" }, { - "@id": "https://bioregistry.io/registry/kerafast" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0085-x" + }, + "https://bioregistry.io/schema/#0000005": "0000000", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DERMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/DERMO/10/dermo.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5111-7263" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DERMO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/DERMO_0000000" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dermo" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0091", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "http://aber-owl.net/ontology/CHMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/nlx.mol", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/cba" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/registry/co_357" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Molecules" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ppo" + "@value": "proteins" }, { - "@id": "https://bioregistry.io/registry/foodex2" + "@value": "neuroscience" }, { - "@id": "https://bioregistry.io/registry/grin" + "@value": "chemistry" }, { - "@id": "https://bioregistry.io/registry/lbctr" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "90806", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXMOL" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_mol_90806" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.mol" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/nif_cell", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/dinto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/EXO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/biokc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioKC" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/biokc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://wwwen.uni.lu/lcsb" + }, + "https://bioregistry.io/schema/#0000005": "bkc640", + "https://bioregistry.io/schema/#0000006": "https://biokb.lcsb.uni.lu/fact/$1", + "https://bioregistry.io/schema/#0000008": "^bkc[0-9]*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biokb.lcsb.uni.lu/fact/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biokb.lcsb.uni.lu/fact/bkc640" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biokc" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FB-SP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/hao", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/hymao/hao" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Hymenoptera Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cgd" + "@id": "https://bioregistry.io/metaregistry/biocontext/HAO" }, { - "@id": "https://bioregistry.io/registry/fcsfree" + "@id": "http://www.ontobee.org/ontology/HAO" }, { - "@id": "https://bioregistry.io/registry/icd10cm" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao" }, { - "@id": "https://bioregistry.io/registry/flopo" + "@id": "https://fairsharing.org/FAIRsharing.kj3m5n" }, { - "@id": "https://bioregistry.io/registry/nlx.dys" + "@id": "http://aber-owl.net/ontology/HAO" }, { - "@id": "https://bioregistry.io/registry/atcvet" + "@id": "https://bioportal.bioontology.org/ontologies/HAO" }, { - "@id": "https://bioregistry.io/registry/tarbase" - }, + "@id": "https://www.obofoundry.org/ontology/hao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/kegg.environ" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/agrkb" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/qtldb" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/cosmic" - }, + "@value": "anatomy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://hymao.org" + }, + "https://bioregistry.io/schema/#0000005": "0000187", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5640-5491" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/HAO_0000187" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hao" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cob", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SPIKE.MAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/fao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/STATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cst.ab", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.5mr9c5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/oridb.sacch", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BOOTSTREP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ENM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.pn1sr5", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-4978-0864", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lutz Fischer" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "lutz.fischer@tu-berlin.de" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.1c1738", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RXNORM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "http://edamontology.org/data_2789", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arraymap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://aber-owl.net/ontology/MEDLINEPLUS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_357", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://bartoc.org/en/node/2021", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3e88d6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/col", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/GALEN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/sdgio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SDG-InterfaceOntology/sdgio" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sustainable Development Goals Interface Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ecg" + "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO" }, { - "@id": "https://bioregistry.io/registry/mmp.db" + "@id": "http://www.ontobee.org/ontology/SDGIO" }, { - "@id": "https://bioregistry.io/registry/igrhcellid" + "@id": "https://fairsharing.org/FAIRsharing.d5ff6e" }, { - "@id": "https://bioregistry.io/registry/viroligo" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/vsao" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/nddf" - }, + "@value": "environmental science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SDG-InterfaceOntology/sdgio" + }, + "https://bioregistry.io/schema/#0000005": "00020134", + "https://bioregistry.io/schema/#0000006": "http://purl.unep.org/sdg/SDGIO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/SDG-InterfaceOntology/sdgio/raw/master/sdgio.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-4366-3088" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.unep.org/sdg/SDGIO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.unep.org/sdg/SDGIO_00020134" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sdgio" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/spbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/bcgo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/kegg.environ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/bs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Biosapiens Protein Feature Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" + }, + "https://bioregistry.io/schema/#0000005": "00042", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/bs/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/Ontology_Files/subsets/biosapiens.obo" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/bs/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/bs/00042" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bs" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wcpd6f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/SASAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/Xenbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/vhog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/epd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Eukaryotic Promoter Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/storedb.file" + "@id": "https://registry.identifiers.org/registry/epd" }, { - "@id": "https://bioregistry.io/registry/gramene.reference" + "@id": "https://bioregistry.io/metaregistry/biocontext/EPD" }, { - "@id": "https://bioregistry.io/registry/phosphosite.sitegroup" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/epd" }, { - "@id": "https://bioregistry.io/registry/nihhesc" + "@id": "https://www.uniprot.org/database/DB-0205" }, { - "@id": "https://bioregistry.io/registry/oostt" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD" }, { - "@id": "https://bioregistry.io/registry/icdc" + "@id": "http://edamontology.org/data_2386" }, { - "@id": "https://bioregistry.io/registry/addgene" - }, + "@id": "https://fairsharing.org/FAIRsharing.yk1krv" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/co_366" + "@value": "bioinformatics" }, { - "@id": "https://bioregistry.io/registry/hinv.protein" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://epd.expasy.org/epd/" + }, + "https://bioregistry.io/schema/#0000005": "TA_H3", + "https://bioregistry.io/schema/#0000006": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z-_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0816-7775" + }, + "https://bioregistry.io/schema/#0000024": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=TA_H3" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "epd" + } + }, + { + "@id": "http://aber-owl.net/ontology/OGI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ccds", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/myco.smeg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/zp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://www.wikidata.org/entity/P593", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://aber-owl.net/ontology/STY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ecoportal", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "The LifeWatch ERIC repository of semantic resources for the ecological domain." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/cpc" + "@id": "http://ecoportal.lifewatch.eu/ontologies/AGROVOC" }, { - "@id": "https://bioregistry.io/registry/napdi" + "@id": "http://ecoportal.lifewatch.eu/ontologies/PCO" }, { - "@id": "https://bioregistry.io/registry/nci.drug" + "@id": "http://ecoportal.lifewatch.eu/ontologies/STY" }, { - "@id": "https://bioregistry.io/registry/nucleotide" - }, + "@id": "http://ecoportal.lifewatch.eu/ontologies/BCO" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "EcoPortal" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "http://ecoportal.lifewatch.eu" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "AGROVOC" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "http://ecoportal.lifewatch.eu/ontologies/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4494-839X" + } + }, + { + "@id": "https://bioregistry.io/registry/nbn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Bibliography Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dbgap" + "@id": "https://bioregistry.io/metaregistry/biocontext/NBN" }, { - "@id": "https://bioregistry.io/registry/signaling-gateway" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn" }, { - "@id": "https://bioregistry.io/registry/imdrf" - }, + "@id": "https://registry.identifiers.org/registry/nbn" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://nbn-resolving.org/resolve_urn.htm" + }, + "https://bioregistry.io/schema/#0000005": "urn:nbn:fi:tkk-004781", + "https://bioregistry.io/schema/#0000006": "http://nbn-resolving.org/resolver?identifier=$1&verb=redirect", + "https://bioregistry.io/schema/#0000008": "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/nbn:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://nbn-resolving.org/resolver?identifier=urn:nbn:fi:tkk-004781&verb=redirect" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nbn" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/AOP.EVENTS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/virsirna", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "VIRsiRNA" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/frbr" + "@id": "https://registry.identifiers.org/registry/virsirna" }, { - "@id": "https://bioregistry.io/registry/datanator.gene" + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRSIRNA" }, { - "@id": "https://bioregistry.io/registry/dictybase" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://crdd.osdd.net/servers/virsirnadb" + }, + "https://bioregistry.io/schema/#0000005": "virsi1909", + "https://bioregistry.io/schema/#0000006": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1", + "https://bioregistry.io/schema/#0000008": "^virsi\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=virsi1909" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "virsirna" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/nomen", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/mtbd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mouse Tumor Biology Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/mtbd" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/gwascentral.study" + "@value": "dna" }, { - "@id": "https://bioregistry.io/registry/ontie" - }, + "@value": "gene expression" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://tumor.informatics.jax.org" + }, + "https://bioregistry.io/schema/#0000005": "1374", + "https://bioregistry.io/schema/#0000006": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=1374" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mtbd" + } + }, + { + "@id": "https://orcid.org/0000-0002-9746-371", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mark Gerstein" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mark@gersteinlab.org" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SCOP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/adw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/disprot.region", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/YEASTINTRON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/cmpo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/CMPO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cellular Microscopy Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/jcggdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo" }, { - "@id": "https://bioregistry.io/registry/c4o" + "@id": "https://fairsharing.org/FAIRsharing.knp11s" }, { - "@id": "https://bioregistry.io/registry/sssom" + "@id": "https://bioportal.bioontology.org/ontologies/CMPO" }, { - "@id": "https://bioregistry.io/registry/omit" + "@id": "http://aber-owl.net/ontology/CMPO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/goche" + "@value": "cell biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ebi.ac.uk/cmpo" + }, + "https://bioregistry.io/schema/#0000005": "0000435", + "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/cmpo/CMPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0643-3144" + }, + "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/cmpo/CMPO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ebi.ac.uk/cmpo/CMPO_0000435" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cmpo" + } + }, + { + "@id": "https://registry.identifiers.org/registry/tarbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/UPA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/clinicaltrials", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/gpi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TGMA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ONE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0031", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "http://aber-owl.net/ontology/SCDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/inaturalist.observation", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The identifier for an observation in iNaturalist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "iNaturalist Observation" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P5683" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.inaturalist.org/observations" + }, + "https://bioregistry.io/schema/#0000005": "36010371", + "https://bioregistry.io/schema/#0000006": "https://www.inaturalist.org/observations/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.inaturalist.org/observations/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.inaturalist.org/observations/36010371" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "inaturalist.observation" + } + }, + { + "@id": "https://bioregistry.io/registry/metatlas.metabolite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A subspace of Metabolic Atlas for compartment-specific records for metabolites.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/cordis.project" + "@id": "https://bioregistry.io/registry/metatlas" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Metabolic Atlas Metabolite" + }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "chemistry" }, { - "@id": "https://bioregistry.io/registry/millipore" + "@value": "metabolites" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://metabolicatlas.org" + }, + "https://bioregistry.io/schema/#0000005": "MAM01234c", + "https://bioregistry.io/schema/#0000006": "https://metabolicatlas.org/identifier/MetabolicAtlas/$1", + "https://bioregistry.io/schema/#0000008": "^MAM\\d{5}\\w$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7753-9042" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://metabolicatlas.org/identifier/MetabolicAtlas/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://metabolicatlas.org/identifier/MetabolicAtlas/MAM01234c" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metatlas.metabolite" + } + }, + { + "@id": "https://bioregistry.io/registry/ftt", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Feature Type Thesaurus" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://apps.usgs.gov/thesaurus/thesaurus-full.php?thcode=3" + }, + "https://bioregistry.io/schema/#0000005": "273", + "https://bioregistry.io/schema/#0000006": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=273" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ftt" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vppyga", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0003-3062-8192", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bernd Müller" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bernd.mueller@zbmed.de" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.identifiers.org/registry/apd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012725", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/cosmic.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "COSMIC Cell Lines" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic-CLP" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cancer.sanger.ac.uk/cell_lines/" + }, + "https://bioregistry.io/schema/#0000005": "906801", + "https://bioregistry.io/schema/#0000006": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=906801" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cosmic.cell" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VIRALZONE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.seq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ato", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "http://www.ontobee.org/ontology/DRON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010170", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.4g5qcw", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bitterdb.rec", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-1297-9725", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Werner Müller" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wmueller@gbf.de" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pathoplant", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/JWS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lgic", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011196", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/orphanet.ordo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Orphanet Rare Disease Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORPHANET.ORDO" }, { - "@id": "https://bioregistry.io/registry/gnomad" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORPHA" }, { - "@id": "https://bioregistry.io/registry/ttd.target" + "@id": "http://aber-owl.net/ontology/ordo" }, { - "@id": "https://bioregistry.io/registry/ddanat" + "@id": "https://fairsharing.org/FAIRsharing.pbbnwa" }, { - "@id": "https://bioregistry.io/registry/mesh.vocab" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ORDO" }, { - "@id": "https://bioregistry.io/registry/mfo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo" }, { - "@id": "https://bioregistry.io/registry/datacommons" + "@id": "https://bioportal.bioontology.org/ontologies/ORDO" }, { - "@id": "https://bioregistry.io/registry/tair.gene" + "@id": "https://registry.identifiers.org/registry/orphanet.ordo" }, { - "@id": "https://bioregistry.io/registry/google.patent" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/glycosciencesdb" + "@value": "health science" }, { - "@id": "https://bioregistry.io/registry/sider.effect" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/rfc" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/ols/ontologies/ordo" + }, + "https://bioregistry.io/schema/#0000005": "C023", + "https://bioregistry.io/schema/#0000006": "http://www.orpha.net/ORDO/Orphanet_$1", + "https://bioregistry.io/schema/#0000008": "^C?\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.orphadata.org/data/ORDO/ordo_orphanet.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4308-6337" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ordo" + }, + "https://bioregistry.io/schema/#0000024": "http://www.orpha.net/ORDO/Orphanet_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.orpha.net/ORDO/Orphanet_C023" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "orphanet.ordo" + } + }, + { + "@id": "http://aber-owl.net/ontology/NGBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/myco.smeg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nmdc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/polbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Abcam", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioregistry.io/registry/napp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Nucleic Acids Phylogenetic Profiling" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/panther.pathway" + "@id": "https://registry.identifiers.org/registry/napp" }, { - "@id": "https://bioregistry.io/registry/biosystems" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napp" }, { - "@id": "https://bioregistry.io/registry/iresite" + "@id": "https://fairsharing.org/FAIRsharing.vr52p3" }, { - "@id": "https://bioregistry.io/registry/envipath" + "@id": "https://registry.bio2kg.org/resource/napp" }, { - "@id": "https://bioregistry.io/registry/myco.tuber" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/NAPP" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/gcst" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/kupo" + "@value": "nucleotide" }, { - "@id": "https://bioregistry.io/registry/bfo" - }, + "@value": "clustering" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://napp.u-psud.fr/" + }, + "https://bioregistry.io/schema/#0000005": "351", + "https://bioregistry.io/schema/#0000006": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1508-8469" + }, + "https://bioregistry.io/schema/#0000024": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=351" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "napp" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dragondb.protein", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/CIDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PDRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/nif.cell", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Neuronal cell types", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/t4fs" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/registry/paleodb" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Cell" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/biostudies" + "@id": "https://www.obofoundry.org/ontology/nif_cell" }, { - "@id": "https://bioregistry.io/registry/metanetx.chemical" + "@id": "https://bioregistry.io/metaregistry/biocontext/NIF_CELL" }, { - "@id": "https://bioregistry.io/registry/edam.operation" + "@id": "https://bioportal.bioontology.org/ontologies/NIFCELL" }, { - "@id": "https://bioregistry.io/registry/nmdc" - }, + "@id": "http://aber-owl.net/ontology/NIFCELL" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/prov" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/repeatsdb.structure" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://neuinfo.org/" + }, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/NIF_CELL_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/NIFCELL/15/nifcell.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4752-543X" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/NIF_CELL_", + "https://bioregistry.io/schema/#0000029": { + "@value": "nif.cell" + } + }, + { + "@id": "https://bioregistry.io/registry/qb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "UKGovLD/publishing-statistical-data" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The data cube vocabulary" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.w3.org/TR/vocab-data-cube" + }, + "https://bioregistry.io/schema/#0000005": "Observation", + "https://bioregistry.io/schema/#0000006": "http://purl.org/linked-data/cube#$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9950-5209" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.org/linked-data/cube#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/linked-data/cube#Observation" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "qb" + } + }, + { + "@id": "https://registry.identifiers.org/registry/gdsc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UNIPROT.ISOFORM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://orcid.org/0000-0003-1637-404", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Christophe Dunand" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dunand@lrsv.ups-tlse.fr" + } + }, + { + "@id": "https://bioregistry.io/registry/co_327", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pearl millet ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/matrixdb" + "@id": "https://fairsharing.org/FAIRsharing.4e3qh9" }, { - "@id": "https://bioregistry.io/registry/aao" + "@id": "https://cropontology.org/ontology/CO_327" }, { - "@id": "https://bioregistry.io/registry/tccd" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327" }, { - "@id": "https://bioregistry.io/registry/sdbs" - }, + "@id": "http://agroportal.lirmm.fr/ontologies/CO_327" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/virmirdb" + "@value": "botany" }, { - "@id": "https://bioregistry.io/registry/ensemblglossary" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/pfam.clan" - }, + "@value": "agriculture" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet" + }, + "https://bioregistry.io/schema/#0000005": "0000095", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_327:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.cropontology.org/ontology/CO_327/Pearl%20millet/owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:Na03b38d0ceb5428ca2af0a10110b77e8" + }, + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_327:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cropontology.org/rdf/CO_327:0000095" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "co_327" + } + }, + { + "@id": "_:Na03b38d0ceb5428ca2af0a10110b77e8", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Crop Ontology Helpdesk" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "helpdesk@cropontology-curationtool.org" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/swissregulon", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SwissRegulon" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/pso" + "@id": "https://registry.identifiers.org/registry/swissregulon" }, { - "@id": "https://bioregistry.io/registry/co_334" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swissregulon" }, { - "@id": "https://bioregistry.io/registry/ppdb" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISSREGULON" }, { - "@id": "https://bioregistry.io/registry/uniparc" - }, + "@id": "https://fairsharing.org/FAIRsharing.7fnx38" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://swissregulon.unibas.ch" + }, + "https://bioregistry.io/schema/#0000005": "AHR", + "https://bioregistry.io/schema/#0000006": "http://swissregulon.unibas.ch/query/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6338-1312" + }, + "https://bioregistry.io/schema/#0000024": "http://swissregulon.unibas.ch/query/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://swissregulon.unibas.ch/query/AHR" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "swissregulon" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rouge", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/efo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/efo/" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Experimental Factor Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/beiresources" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo" }, { - "@id": "https://bioregistry.io/registry/pd_st" + "@id": "http://www.wikidata.org/entity/P11956" }, { - "@id": "https://bioregistry.io/registry/snomedct" + "@id": "http://agroportal.lirmm.fr/ontologies/EFO" }, { - "@id": "https://bioregistry.io/registry/dcat" + "@id": "https://bioregistry.io/metaregistry/biocontext/EFO" }, { - "@id": "https://bioregistry.io/registry/icd10" + "@id": "http://www.ontobee.org/ontology/EFO" }, { - "@id": "https://bioregistry.io/registry/3dmet" + "@id": "https://registry.identifiers.org/registry/efo" }, { - "@id": "https://bioregistry.io/registry/phylomedb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo" }, { - "@id": "https://bioregistry.io/registry/epcc" + "@id": "https://fairsharing.org/FAIRsharing.1gr4tz" }, { - "@id": "https://bioregistry.io/registry/kegg.dgroup" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO" }, { - "@id": "https://bioregistry.io/registry/umbbd.compound" + "@id": "https://bioportal.bioontology.org/ontologies/EFO" }, { - "@id": "https://bioregistry.io/registry/trnadbce" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO" }, { - "@id": "https://bioregistry.io/registry/peptideatlas" - }, + "@id": "http://aber-owl.net/ontology/EFO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/lpt" + "@value": "functional genomics" }, { - "@id": "https://bioregistry.io/registry/runbiosimulations" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.ebi.ac.uk/efo" + }, + "https://bioregistry.io/schema/#0000005": "0005147", + "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/efo/EFO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.ebi.ac.uk/efo/efo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3458-4839" + }, + "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/efo/EFO_", + "https://bioregistry.io/schema/#0000026": { + "@id": "https://ror.org/02catss52" + }, + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ebi.ac.uk/efo/EFO_0005147" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "efo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/rrid" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/iuphar.receptor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.d95034", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ADW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bartoc.org/en/node/1915", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2871", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/multicellds", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/gnd" + "@id": "https://bioregistry.io/registry/multicellds.snapshot" }, { - "@id": "https://bioregistry.io/registry/gbif" + "@id": "https://bioregistry.io/registry/multicellds.collection" }, { - "@id": "https://bioregistry.io/registry/abs" - }, + "@id": "https://bioregistry.io/registry/multicellds.cell_line" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MultiCellDS" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.pqzyd5" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://multicellds.org/MultiCellDB.php" + }, + "https://bioregistry.io/schema/#0000005": "MCDS_S_0000000001", + "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8003-6860" + }, + "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://multicellds.org/MultiCellDB/MCDS_S_0000000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "multicellds" + } + }, + { + "@id": "https://bioregistry.io/registry/snp2tfbs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SNP to Transcription Factor Binding Sites" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/snp2tfbs" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://ccg.epfl.ch/snp2tfbs/" + }, + "https://bioregistry.io/schema/#0000005": "rs11603840", + "https://bioregistry.io/schema/#0000006": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1", + "https://bioregistry.io/schema/#0000008": "^rs[0-9]+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/dbsnp" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=rs11603840" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "snp2tfbs" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PSI-MI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/skos", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Simple Knowledge Organization System" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/maizegdb.locus" + "@id": "https://bioregistry.io/metaregistry/biocontext/skos" }, { - "@id": "https://bioregistry.io/registry/reactome" + "@id": "https://fairsharing.org/FAIRsharing.48e326" }, { - "@id": "https://bioregistry.io/registry/hancestro" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos" }, { - "@id": "https://bioregistry.io/registry/kegg.rclass" - }, + "@id": "http://aber-owl.net/ontology/skos" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/covoc" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/kegg.enzyme" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.w3.org/2004/02/skos/" + }, + "https://bioregistry.io/schema/#0000005": "prefLabel", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/2004/02/skos/core#$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.w3.org/TR/skos-reference/skos.rdf" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9018-4680" + }, + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/2004/02/skos/core#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.w3.org/2004/02/skos/core#prefLabel" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "skos" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0051", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/habronattus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ECO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.kisao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/bitbucket", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Bitbucket is a Git-based source code repository hosting service owned by Atlassian.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bitbucket" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/rebec" + "@id": "https://www.re3data.org/repository/r3d100013478" }, { - "@id": "https://bioregistry.io/registry/sgd.pathways" + "@id": "https://registry.identifiers.org/registry/bitbucket" }, { - "@id": "https://bioregistry.io/registry/dolce" - }, + "@id": "https://fairsharing.org/FAIRsharing.fc3431" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/illumina.probe" + "@value": "software engineering" }, { - "@id": "https://bioregistry.io/registry/gdc" + "@value": "knowledge and information systems" }, { - "@id": "https://bioregistry.io/registry/jcm" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.atlassian.com/" + }, + "https://bioregistry.io/schema/#0000005": "andreadega/systems-biology-compiler", + "https://bioregistry.io/schema/#0000006": "https://bitbucket.org/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bitbucket.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bitbucket.org/andreadega/systems-biology-compiler" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bitbucket" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000012", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "is deprecated" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#boolean" + } + }, + { + "@id": "http://www.wikidata.org/entity/P6778", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.COLLECTION", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/so", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://registry.identifiers.org/registry/multicellds.collection", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/worms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NGBO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-7591-0020", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Jason E. Stajich" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jason.stajich@ucr.edu" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FBdv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.n8pxvx", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bartoc.org/en/node/549", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/fma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/openalex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OpenAlex" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/panther.node" + "@value": "wikidata" }, { - "@id": "https://bioregistry.io/registry/cvdo" - }, + "@value": "knowledge graph" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://openalex.org/" + }, + "https://bioregistry.io/schema/#0000005": "W2741809807", + "https://bioregistry.io/schema/#0000006": "https://openalex.org/$1", + "https://bioregistry.io/schema/#0000008": "^[WAICV]\\d{2,}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1613-5981" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://openalex.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://openalex.org/W2741809807" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "openalex" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pseudomonas", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010906", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/pdc.study", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Proteomic Data Commons" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pdc.cancer.gov/pdc" + }, + "https://bioregistry.io/schema/#0000005": "PDC000351", + "https://bioregistry.io/schema/#0000006": "https://pdc.cancer.gov/pdc/study/$1", + "https://bioregistry.io/schema/#0000008": "^PDC\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://pdc.cancer.gov/pdc/study/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://pdc.cancer.gov/pdc/study/PDC000351" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pdc.study" + } + }, + { + "@id": "https://registry.identifiers.org/registry/aop", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/go", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/go.rule" + }, + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/geneontology/go-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gene Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/kegg.brite" + "@id": "https://www.uniprot.org/database/DB-0037" }, { - "@id": "https://bioregistry.io/registry/elm" + "@id": "https://www.obofoundry.org/ontology/go" }, { - "@id": "https://bioregistry.io/registry/gainesville.core" + "@id": "https://bioregistry.io/metaregistry/go/resolve/GO" }, { - "@id": "https://bioregistry.io/registry/brenda.ligandgroup" + "@id": "http://aber-owl.net/ontology/GO" }, { - "@id": "https://bioregistry.io/registry/ncit" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128" }, { - "@id": "https://bioregistry.io/registry/wb.rnai" + "@id": "http://www.wikidata.org/entity/P686" }, { - "@id": "https://bioregistry.io/registry/ensembl.plant" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go" }, { - "@id": "https://bioregistry.io/registry/n2t" + "@id": "https://bartoc.org/en/node/572" }, { - "@id": "https://bioregistry.io/registry/lipidmaps" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO" }, { - "@id": "https://bioregistry.io/registry/nlx.inv" + "@id": "http://edamontology.org/data_1176" }, { - "@id": "https://bioregistry.io/registry/amphx" + "@id": "https://bioportal.bioontology.org/ontologies/GO" }, { - "@id": "https://bioregistry.io/registry/zea" + "@id": "https://registry.identifiers.org/registry/go" }, { - "@id": "https://bioregistry.io/registry/dbvar.variant" + "@id": "http://www.ontobee.org/ontology/GO" }, { - "@id": "https://bioregistry.io/registry/phosphosite.residue" + "@id": "https://bioregistry.io/metaregistry/biocontext/GO" }, { - "@id": "https://bioregistry.io/registry/huge" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/go" }, { - "@id": "https://bioregistry.io/registry/co_330" + "@id": "https://fairsharing.org/FAIRsharing.6xq0ee" }, { - "@id": "https://bioregistry.io/registry/rgd.strain" + "@id": "https://www.re3data.org/repository/r3d100014165" }, { - "@id": "https://bioregistry.io/registry/sabiork.kineticrecord" + "@id": "http://agroportal.lirmm.fr/ontologies/GO" }, { - "@id": "https://bioregistry.io/registry/nif.std" - }, + "@id": "https://registry.bio2kg.org/resource/go" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/nlx.mol" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/kestrelo" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/metnetdb" + "@value": "gene" }, { - "@id": "https://bioregistry.io/registry/bcbc" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://geneontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "0032571", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/go.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/mba" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/registry/compulyeast" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "https://bioregistry.io/registry/violinnet" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@id": "https://bioregistry.io/registry/xml" - }, + "@id": "https://bioregistry.io/registry/ro" + } + ], + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/duo" + "@id": "https://bioregistry.io/registry/pco" }, { - "@id": "https://bioregistry.io/registry/bacmap.biog" + "@id": "https://bioregistry.io/registry/envo" }, { - "@id": "https://bioregistry.io/registry/skosxl" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://bioregistry.io/registry/omiabis" + "@id": "https://bioregistry.io/registry/maxo" }, { - "@id": "https://bioregistry.io/registry/spd" + "@id": "https://bioregistry.io/registry/xpo" }, { - "@id": "https://bioregistry.io/registry/fao.asfis" + "@id": "https://bioregistry.io/registry/zp" }, { - "@id": "https://bioregistry.io/registry/dso" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://bioregistry.io/registry/hgnc" + "@id": "https://bioregistry.io/registry/chiro" }, { - "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" + "@id": "https://bioregistry.io/registry/planp" }, { - "@id": "https://bioregistry.io/registry/hbvar" + "@id": "https://bioregistry.io/registry/ecocore" }, { - "@id": "https://bioregistry.io/registry/apaonto" + "@id": "https://bioregistry.io/registry/ecto" }, { - "@id": "https://bioregistry.io/registry/amoebadb" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/registry/go.rule" - }, + "@id": "https://bioregistry.io/registry/cl" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6787-2901" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/kaggle" + "@value": "gobpid" }, { - "@id": "https://bioregistry.io/registry/facebase" + "@value": "gomfid" }, { - "@id": "https://bioregistry.io/registry/fairsharing.organization" + "@value": "goccid" }, { - "@id": "https://bioregistry.io/registry/odor" + "@value": "gobp" }, { - "@id": "https://bioregistry.io/registry/pkdb" + "@value": "gocc" }, { - "@id": "https://bioregistry.io/registry/mp" - }, + "@value": "gomf" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GO_0032571" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "go" + } + }, + { + "@id": "https://bioregistry.io/registry/idpo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Intrinsically Disordered Proteins Ontology" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/co_321" + "@value": "proteins" }, { - "@id": "https://bioregistry.io/registry/rexo" + "@value": "structural bioinformatics" }, { - "@id": "https://bioregistry.io/registry/omop" + "@value": "structural biochemistry" }, { - "@id": "https://bioregistry.io/registry/adw" - }, + "@value": "protein structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.disprot.org/ontology" + }, + "https://bioregistry.io/schema/#0000005": "00056", + "https://bioregistry.io/schema/#0000006": "https://www.disprot.org/idpo/IDPO:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-0341-4888" + }, + "https://bioregistry.io/schema/#0000024": "https://www.disprot.org/idpo/IDPO:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.disprot.org/idpo/IDPO:00056" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "idpo" + } + }, + { + "@id": "http://www.wikidata.org/entity/P2646", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/nlx.func", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NLXFUNC covers terms for cognitive function.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/nsrrc" + "@id": "https://bioregistry.io/registry/nif" }, { - "@id": "https://bioregistry.io/registry/col" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NIF Standard Ontology: Cognitive Function" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "neuroscience" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/SciCrunch/NIF-Ontology" + }, + "https://bioregistry.io/schema/#0000005": "90801", + "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_func_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7509-4801" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "NLXFUNC" + }, + "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_func_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_func_90801" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nlx.func" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.COMPOUND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massbank", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4901", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/swiss-model", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SWISS-MODEL Repository" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mmp.ref" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWISS-MODEL" }, { - "@id": "https://bioregistry.io/registry/cutg" + "@id": "https://registry.identifiers.org/registry/swiss-model" }, { - "@id": "https://bioregistry.io/registry/kcris" + "@id": "https://fairsharing.org/FAIRsharing.vxz9pn" }, { - "@id": "https://bioregistry.io/registry/tahe" + "@id": "https://www.re3data.org/repository/r3d100010605" }, { - "@id": "https://bioregistry.io/registry/pfam" + "@id": "https://registry.bio2kg.org/resource/swissmodel" }, { - "@id": "https://bioregistry.io/registry/wbls" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/swiss-model" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/pandit" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/reto" + "@value": "protein" }, { - "@id": "https://bioregistry.io/registry/tritrypdb" + "@value": "proteomics" }, { - "@id": "https://bioregistry.io/registry/cosmic.cell" - }, + "@value": "structure" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://swissmodel.expasy.org" + }, + "https://bioregistry.io/schema/#0000005": "P23298", + "https://bioregistry.io/schema/#0000006": "https://swissmodel.expasy.org/repository/uniprot/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/uniprot" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2715-335X" + }, + "https://bioregistry.io/schema/#0000024": "https://swissmodel.expasy.org/repository/uniprot/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://swissmodel.expasy.org/repository/uniprot/P23298" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "swiss-model" + } + }, + { + "@id": "https://bioregistry.io/registry/drduke", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "identifier for chemicals linked to information on occurrence in plants", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P10074" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://phytochem.nal.usda.gov/phytochem/search/list" + }, + "https://bioregistry.io/schema/#0000005": "19", + "https://bioregistry.io/schema/#0000006": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://phytochem.nal.usda.gov/phytochem/chemicals/show/19" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "drduke" + } + }, + { + "@id": "https://bioregistry.io/registry/namerxn", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NameRXN" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mro" + "@value": "reactions" }, { - "@id": "https://bioregistry.io/registry/wbbt" + "@value": "text mining" }, { - "@id": "https://bioregistry.io/registry/kegg.compound" - }, + "@value": "chemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.nextmovesoftware.com/namerxn.html" + }, + "https://bioregistry.io/schema/#0000005": "4.2.78", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "namerxn" + } + }, + { + "@id": "https://bioregistry.io/registry/github.issue", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An issue in any public repository on GitHub.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GitHub Issue" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/civic.gid" + "@value": "software engineering" }, { - "@id": "https://bioregistry.io/registry/sty" + "@value": "version control" }, { - "@id": "https://bioregistry.io/registry/pseudomonas" + "@value": "knowledge and information systems" }, { - "@id": "https://bioregistry.io/registry/sfam" - }, + "@value": "project management" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/" + }, + "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry/424", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/resolve/github/issue/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/resolve/github/issue/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bioregistry.io/resolve/github/issue/biopragmatics/bioregistry/424" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "github.issue" + } + }, + { + "@id": "https://orcid.org/0000-0002-5379-5359", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Asiyah Yu Lin" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "linikujp@gmail.com" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11199", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.254", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://orcid.org/0000-0001-9016-2684", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "James C. Hu" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jimhu@tamu.edu" + } + }, + { + "@id": "https://registry.identifiers.org/registry/dbsnp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FIDEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/myco.smeg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MycoBrowser smegmatis" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/qb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/myco.smeg" }, { - "@id": "https://bioregistry.io/registry/worms" + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.SMEG" }, { - "@id": "https://bioregistry.io/registry/pmap.cutdb" + "@id": "https://registry.identifiers.org/registry/myco.smeg" }, { - "@id": "https://bioregistry.io/registry/hgnc.symbol" - }, + "@id": "https://registry.bio2kg.org/resource/myco.smeg" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/glycomapsdb" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/scopus.work" - }, + "@value": "sequence" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://mycobrowser.epfl.ch/smegmalist.html" + }, + "https://bioregistry.io/schema/#0000005": "MSMEG_3769", + "https://bioregistry.io/schema/#0000006": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1", + "https://bioregistry.io/schema/#0000008": "^MSMEG\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=MSMEG_3769" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "myco.smeg" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bykdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0001-5699-0515", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rafael Richards" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rmrich5@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.PROTEIN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/tto", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology covering the taxonomy of teleosts (bony fish)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/phenoscape/teleost-taxonomy-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Teleost taxonomy ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/unpd" + "@id": "https://bioportal.bioontology.org/ontologies/TTO" }, { - "@id": "https://bioregistry.io/registry/orcid" + "@id": "https://registry.bio2kg.org/resource/tto" }, { - "@id": "https://bioregistry.io/registry/ero" + "@id": "http://aber-owl.net/ontology/TTO" }, { - "@id": "https://bioregistry.io/registry/pscdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto" }, { - "@id": "https://bioregistry.io/registry/napp" + "@id": "http://www.ontobee.org/ontology/TTO" }, { - "@id": "https://bioregistry.io/registry/geno" + "@id": "https://bioregistry.io/metaregistry/biocontext/TTO" }, { - "@id": "https://bioregistry.io/registry/pharmgkb.drug" + "@id": "https://fairsharing.org/FAIRsharing.1rj558" }, { - "@id": "https://bioregistry.io/registry/unichem" - }, + "@id": "https://www.obofoundry.org/ontology/tto" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/gxa.expt" + "@value": "phenotype" }, { - "@id": "https://bioregistry.io/registry/citexplore" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/cmecs" + "@value": "fish" }, { - "@id": "https://bioregistry.io/registry/repec" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/niaest" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/phenoscape/teleost-taxonomy-ontology" + }, + "https://bioregistry.io/schema/#0000005": "1058367", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TTO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/tto.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8688-6599" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TTO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/TTO_1058367" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tto" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.compound", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100014165", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/mlc", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MLCommons Association artifacts, including benchmark results, datasets, and saved models.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MLCommons Association" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/mlc" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://mlcommons.org/en/" + }, + "https://bioregistry.io/schema/#0000005": "0.7-123", + "https://bioregistry.io/schema/#0000006": "https://www.mlcommons.org/mlc-id/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-zA-Z\\.\\-\\_]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.mlcommons.org/mlc-id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.mlcommons.org/mlc-id/0.7-123" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mlc" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qv4b3c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0001-6183-4429", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alberto Traverso" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "alberto.traverso@maastro.nl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cdno", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/broad", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Broad Fungal Genome Initiative" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/icldb" + "@id": "https://bioregistry.io/metaregistry/biocontext/BROAD" }, { - "@id": "https://bioregistry.io/registry/one" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/broad" }, { - "@id": "https://bioregistry.io/registry/nbrc" - }, + "@id": "https://registry.identifiers.org/registry/broad" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/" + }, + "https://bioregistry.io/schema/#0000005": "S7000002168151102", + "https://bioregistry.io/schema/#0000006": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1", + "https://bioregistry.io/schema/#0000008": "^S\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=S7000002168151102" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "broad" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/iuphar.family", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/IDOMAL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/depod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ADO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.a0k4cd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/amoebadb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ERV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/nmpdr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.ontobee.org/ontology/PHIPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ICEBERG.FAMILY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012733", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/otl", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/p3db", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012705", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/DDANAT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "http://edamontology.org/data_2646", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ecogene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/VTO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ss78t4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/opmi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.hpvbxb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/rrid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/jrct", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Japan Registry of Clinical Trials" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://jrct.niph.go.jp" + }, + "https://bioregistry.io/schema/#0000005": "jRCTs041220087", + "https://bioregistry.io/schema/#0000006": "https://jrct.niph.go.jp/en-latest-detail/$1", + "https://bioregistry.io/schema/#0000008": "^jRCT\\w?\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://jrct.niph.go.jp/en-latest-detail/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://jrct.niph.go.jp/en-latest-detail/jRCTs041220087" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "jrct" + } + }, + { + "@id": "https://bioregistry.io/registry/cteno", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An anatomical and developmental ontology for ctenophores (Comb Jellies)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/ctenophore-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ctenophore Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/reproduceme" + "@id": "https://bioregistry.io/metaregistry/biocontext/CTENO" }, { - "@id": "https://bioregistry.io/registry/fungidb" + "@id": "https://fairsharing.org/FAIRsharing.mgxgza" }, { - "@id": "https://bioregistry.io/registry/transportdb" + "@id": "http://aber-owl.net/ontology/CTENO" }, { - "@id": "https://bioregistry.io/registry/noncodev3" + "@id": "https://bioportal.bioontology.org/ontologies/CTENO" }, { - "@id": "https://bioregistry.io/registry/biorxiv" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno" }, { - "@id": "https://bioregistry.io/registry/empiar" + "@id": "https://www.obofoundry.org/ontology/cteno" }, { - "@id": "https://bioregistry.io/registry/scop.sccs" - }, + "@id": "http://www.ontobee.org/ontology/CTENO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mtbd" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/gsfa" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/mpath" + "@value": "developmental biology" }, { - "@id": "https://bioregistry.io/registry/gtr" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/ctenophore-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000047", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CTENO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cteno.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/occ" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/registry/protonet.cluster" - }, + "@id": "https://bioregistry.io/registry/ro" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CTENO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CTENO_0000047" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cteno" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mpid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/planttfdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/ehdaa2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/lipro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cheminf", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "Contains entries for various database identifiers" + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/cro" + "@id": "https://semanticscience.org/resource/CHEMINF_000304" }, { - "@id": "https://bioregistry.io/registry/planttfdb" + "@id": "https://semanticscience.org/resource/CHEMINF_000302" }, { - "@id": "https://bioregistry.io/registry/kegg.reaction" + "@id": "https://semanticscience.org/resource/CHEMINF_000141" }, { - "@id": "https://bioregistry.io/registry/ecoliwiki" + "@id": "https://semanticscience.org/resource/CHEMINF_000406" }, { - "@id": "https://bioregistry.io/registry/oryzabase.gene" + "@id": "https://semanticscience.org/resource/CHEMINF_000405" }, { - "@id": "https://bioregistry.io/registry/chemrof" + "@id": "https://semanticscience.org/resource/CHEMINF_000564" }, { - "@id": "https://bioregistry.io/registry/ecao" + "@id": "https://semanticscience.org/resource/CHEMINF_000567" }, { - "@id": "https://bioregistry.io/registry/pharmvar" + "@id": "https://semanticscience.org/resource/CHEMINF_000407" }, { - "@id": "https://bioregistry.io/registry/euclinicaltrials" + "@id": "https://semanticscience.org/resource/CHEMINF_000446" }, { - "@id": "https://bioregistry.io/registry/miriam" + "@id": "https://semanticscience.org/resource/CHEMINF_000409" }, { - "@id": "https://bioregistry.io/registry/publons.researcher" + "@id": "https://semanticscience.org/resource/CHEMINF_000563" }, { - "@id": "https://bioregistry.io/registry/civic.sid" + "@id": "https://semanticscience.org/resource/CHEMINF_000569" }, { - "@id": "https://bioregistry.io/registry/doap" + "@id": "https://semanticscience.org/resource/CHEMINF_000140" }, { - "@id": "https://bioregistry.io/registry/fypo" + "@id": "https://semanticscience.org/resource/CHEMINF_000447" }, { - "@id": "https://bioregistry.io/registry/glycomedb" + "@id": "https://semanticscience.org/resource/CHEMINF_000565" }, { - "@id": "https://bioregistry.io/registry/mdm" + "@id": "https://semanticscience.org/resource/CHEMINF_000411" }, { - "@id": "https://bioregistry.io/registry/topdb" + "@id": "https://semanticscience.org/resource/CHEMINF_000412" }, { - "@id": "https://bioregistry.io/registry/mop" + "@id": "https://semanticscience.org/resource/CHEMINF_000408" }, { - "@id": "https://bioregistry.io/registry/hdr" - }, + "@id": "https://semanticscience.org/resource/CHEMINF_000566" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chemical Information Ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@value": "https://github.com/semanticchemistry/semanticchemistry" + }, + "https://bioregistry.io/schema/#0000005": { + "@value": "000140" + }, + "https://bioregistry.io/schema/#0000006": { + "@value": "https://semanticscience.org/resource/CHEMINF_$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7542-0286" + } + }, + { + "@id": "https://registry.identifiers.org/registry/echobase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/metanetx.compartment", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MetaNetX compartment" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/idocovid19" + "@id": "https://registry.identifiers.org/registry/metanetx.compartment" }, { - "@id": "https://bioregistry.io/registry/nasc" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment" }, { - "@id": "https://bioregistry.io/registry/tgd" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.COMPARTMENT" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.metanetx.org/" + }, + "https://bioregistry.io/schema/#0000005": "MNXC15", + "https://bioregistry.io/schema/#0000006": "https://www.metanetx.org/comp_info/$1", + "https://bioregistry.io/schema/#0000008": "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.metanetx.org/comp_info/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.metanetx.org/comp_info/MNXC15" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "metanetx.compartment" + } + }, + { + "@id": "https://bioregistry.io/registry/doqcs.model", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/mobidb" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/vcell" - }, + "@id": "https://bioregistry.io/registry/doqcs" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Quantitative Cellular Signaling: Model" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/rdfs" + "@id": "https://registry.bio2kg.org/resource/doqcs.model" }, { - "@id": "https://bioregistry.io/registry/fabio" + "@id": "https://bioregistry.io/metaregistry/biocontext/DOQCS.MODEL" }, { - "@id": "https://bioregistry.io/registry/cog" + "@id": "https://registry.identifiers.org/registry/doqcs.model" }, { - "@id": "https://bioregistry.io/registry/puro" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "model" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://doqcs.ncbs.res.in/" + }, + "https://bioregistry.io/schema/#0000005": "57", + "https://bioregistry.io/schema/#0000006": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=57" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "doqcs.model" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WIKIDATA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/gnd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gemeinsame Normdatei" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/tair.protein" + "@id": "https://bartoc.org/en/node/430" }, { - "@id": "https://bioregistry.io/registry/xl" + "@id": "https://registry.identifiers.org/registry/gnd" }, { - "@id": "https://bioregistry.io/registry/mao" - }, + "@id": "https://fairsharing.org/FAIRsharing.8337e2" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ecyano.rule" + "@value": "culture" }, { - "@id": "https://bioregistry.io/registry/jax" + "@value": "social science" }, { - "@id": "https://bioregistry.io/registry/pw" - }, + "@value": "knowledge and information systems" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://lobid.org/" + }, + "https://bioregistry.io/schema/#0000005": "117145750", + "https://bioregistry.io/schema/#0000006": "https://lobid.org/gnd/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9X\\-]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://lobid.org/gnd/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://lobid.org/gnd/117145750" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gnd" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OGI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mesh.2012", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.xz5m1a", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Xenbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "http://aber-owl.net/ontology/ZEA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mondo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.anpj91", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/omo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/information-artifact-ontology/ontology-metadata" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "OBO Metadata Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/webelements" + "@id": "https://www.obofoundry.org/ontology/omo" }, { - "@id": "https://bioregistry.io/registry/corrdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo" }, { - "@id": "https://bioregistry.io/registry/mirtarbase" + "@id": "https://bioportal.bioontology.org/ontologies/OMO" }, { - "@id": "https://bioregistry.io/registry/psdo" + "@id": "http://aber-owl.net/ontology/OMO" }, { - "@id": "https://bioregistry.io/registry/pdc.study" - }, + "@id": "http://www.ontobee.org/ontology/OMO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/pubchem.bioassay" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/xmetdb" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/information-artifact-ontology/ontology-metadata" + }, + "https://bioregistry.io/schema/#0000005": "0003003", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/omo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/pcl" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OMO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OMO_0003003" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "omo" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "http://aber-owl.net/ontology/MA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.nYaZ1N", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mim", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/dictybase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://bioregistry.io/registry/dictybase.gene" }, { - "@id": "https://bioregistry.io/registry/dragondb.allele" - }, + "@id": "https://bioregistry.io/registry/dictybase.est" + } + ], + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "dictyBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/chembl.cell" + "@id": "https://www.re3data.org/repository/r3d100010586" }, { - "@id": "https://bioregistry.io/registry/ucsc" + "@id": "https://registry.bio2kg.org/resource/dictybase" }, { - "@id": "https://bioregistry.io/registry/diseaseclass" + "@id": "https://bioregistry.io/metaregistry/biocontext/dictyBase" }, { - "@id": "https://bioregistry.io/registry/nextdb" + "@id": "https://bioregistry.io/metaregistry/go/resolve/dictyBase" }, { - "@id": "https://bioregistry.io/registry/mimodb" + "@id": "https://www.uniprot.org/database/DB-0015" }, { - "@id": "https://bioregistry.io/registry/cst.ab" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/dictyBase" }, { - "@id": "https://bioregistry.io/registry/receptome.family" - }, + "@id": "https://fairsharing.org/FAIRsharing.4shj9c" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/lincs.protein" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/neurovault.collection" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/birnlex" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/imgt.hla" - }, + "@value": "comparative genomics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://dictybase.org" + }, + "https://bioregistry.io/schema/#0000005": "DDB0191090", + "https://bioregistry.io/schema/#0000006": "http://dictybase.org/gene/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "dictyBase" + }, + "https://bioregistry.io/schema/#0000024": "http://dictybase.org/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://dictybase.org/gene/DDB0191090" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dictybase" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/LiGeA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CVDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/treebase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/TreeBASE/treebase/issues" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TreeBASE" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/bibo" + "@id": "https://registry.identifiers.org/registry/treebase" }, { - "@id": "https://bioregistry.io/registry/hoelzel" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/treebase" }, { - "@id": "https://bioregistry.io/registry/tgn" + "@id": "https://registry.bio2kg.org/resource/treebase" }, { - "@id": "https://bioregistry.io/registry/owlstar" + "@id": "https://www.re3data.org/repository/r3d100010170" }, { - "@id": "https://bioregistry.io/registry/conference" + "@id": "https://fairsharing.org/FAIRsharing.zcn4w4" }, { - "@id": "https://bioregistry.io/registry/civic.did" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/TREEBASE" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/trans" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/mge" + "@value": "phylogenomics" }, { - "@id": "https://bioregistry.io/registry/lincs.smallmolecule" - }, + "@value": "phylogenetics" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://treebase.org/" + }, + "https://bioregistry.io/schema/#0000005": "TB2:S1000", + "https://bioregistry.io/schema/#0000006": "http://purl.org/phylo/treebase/phylows/study/$1?format=html", + "https://bioregistry.io/schema/#0000008": "^TB[1,2]?:[A-Z][a-z]?\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9254-7318" + }, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/treebase:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/phylo/treebase/phylows/study/TB2:S1000?format=html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "treebase" + } + }, + { + "@id": "https://registry.identifiers.org/registry/phosphosite.residue", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IREFWEB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/interpro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0001-9943-6127", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Akhilesh Pandey" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pandey@jhmi.edu" + } + }, + { + "@id": "https://bioregistry.io/registry/civic", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/mixs" + "@id": "https://bioregistry.io/registry/civic.tid" }, { - "@id": "https://bioregistry.io/registry/rnamods" + "@id": "https://bioregistry.io/registry/civic.vid" }, { - "@id": "https://bioregistry.io/registry/tol" + "@id": "https://bioregistry.io/registry/civic.sid" }, { - "@id": "https://bioregistry.io/registry/mipmod" + "@id": "https://bioregistry.io/registry/civic.gid" }, { - "@id": "https://bioregistry.io/registry/metanetx.reaction" + "@id": "https://bioregistry.io/registry/civic.eid" }, { - "@id": "https://bioregistry.io/registry/arxiv" + "@id": "https://bioregistry.io/registry/civic.did" }, { - "@id": "https://bioregistry.io/registry/cstr" - }, + "@id": "https://bioregistry.io/registry/civic.aid" + } + ] + }, + { + "@id": "https://bioregistry.io/registry/epso", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Epilepsy and Seizure Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ohmi" + "@id": "https://fairsharing.org/FAIRsharing.ttprgy" }, { - "@id": "https://bioregistry.io/registry/adms" + "@id": "http://aber-owl.net/ontology/EPSO" }, { - "@id": "https://bioregistry.io/registry/clyh" + "@id": "http://www.ontobee.org/ontology/EPSO" }, { - "@id": "https://bioregistry.io/registry/gramene.taxonomy" - }, + "@id": "https://bioportal.bioontology.org/ontologies/EPSO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/omp" + "@value": "neurology" }, { - "@id": "https://bioregistry.io/registry/innatedb" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://prism.case.edu/prism/index.php/EpilepsyOntology" + }, + "https://bioregistry.io/schema/#0000005": "0000400", + "https://bioregistry.io/schema/#0000006": "http://www.case.edu/EpilepsyOntology.owl#$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/EPSO/3/epso.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9190-4256" + }, + "https://bioregistry.io/schema/#0000024": "http://www.case.edu/EpilepsyOntology.owl#", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.case.edu/EpilepsyOntology.owl#0000400" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "epso" + } + }, + { + "@id": "http://www.wikidata.org/entity/P6861", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bpxgb6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/biosystems", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioSystems" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/medlineplus" + "@id": "https://www.re3data.org/repository/r3d100011033" }, { - "@id": "https://bioregistry.io/registry/sstoss" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosystems" }, { - "@id": "https://bioregistry.io/registry/topfind" + "@id": "https://fairsharing.org/FAIRsharing.w2eeqr" }, { - "@id": "https://bioregistry.io/registry/pmap.substratedb" + "@id": "https://registry.identifiers.org/registry/biosystems" }, { - "@id": "https://bioregistry.io/registry/fovt" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOSYSTEMS" }, { - "@id": "https://bioregistry.io/registry/snornabase" - }, + "@id": "https://registry.bio2kg.org/resource/biosystems" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/eurofir" + "@value": "pathways" }, { - "@id": "https://bioregistry.io/registry/semapv" + "@value": "biology" }, { - "@id": "https://bioregistry.io/registry/goeco" + "@value": "molecules" }, { - "@id": "https://bioregistry.io/registry/bmrb" - }, + "@value": "systems biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/biosystems/" + }, + "https://bioregistry.io/schema/#0000005": "001", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/biosystems/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/biosystems/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/biosystems/001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biosystems" + } + }, + { + "@id": "https://orcid.org/0000-0002-2212-4771", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Surjeet Kumar Arya" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "surjeet.arya@uky.edu" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/snap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/os", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/AGRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PANTHER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/imsr_em", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "European Mouse Mutant Archive" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ccf" + "@value": "mutant mouse repository" }, { - "@id": "https://bioregistry.io/registry/ricegap" + "@value": "mutant mouse strain" }, { - "@id": "https://bioregistry.io/registry/bko" + "@value": "mouse" }, { - "@id": "https://bioregistry.io/registry/itmctr" + "@value": "" }, { - "@id": "https://bioregistry.io/registry/datf" - }, + "@value": "mutant strain" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.infrafrontier.eu/emma/" + }, + "https://bioregistry.io/schema/#0000005": "11478", + "https://bioregistry.io/schema/#0000006": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=11478" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "imsr_em" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CLAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ega.dataset", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.250a8c", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_enzymeID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.mxx5rp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/kegg.genome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/pharmgkb.gene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/fbcv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GEO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cio", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/FYPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/cmf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/soybase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/exo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/cob", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/OBOFoundry/COB" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Core Ontology for Biology and Biomedicine" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/seed.reaction" + "@id": "http://aber-owl.net/ontology/COB" }, { - "@id": "https://bioregistry.io/registry/ga4ghdos" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob" }, { - "@id": "https://bioregistry.io/registry/insdc.gcf" + "@id": "http://www.ontobee.org/ontology/COB" }, { - "@id": "https://bioregistry.io/registry/gwascentral.phenotype" + "@id": "https://www.obofoundry.org/ontology/cob" }, { - "@id": "https://bioregistry.io/registry/biolegend" - }, + "@id": "https://bioportal.bioontology.org/ontologies/COB" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/pav" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/omid" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://obofoundry.org/COB/" + }, + "https://bioregistry.io/schema/#0000005": "0000080", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COB_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cob.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8457-6693" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COB_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/COB_0000080" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cob" + } + }, + { + "@id": "https://bioregistry.io/registry/noncodev4.gene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NONCODE v4 Gene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/tigrfam" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene" }, { - "@id": "https://bioregistry.io/registry/antweb" + "@id": "https://registry.identifiers.org/registry/noncodev4.gene" }, { - "@id": "https://bioregistry.io/registry/tsc" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.bioinfo.org/NONCODEv4/" + }, + "https://bioregistry.io/schema/#0000005": "NONHSAG00001", + "https://bioregistry.io/schema/#0000006": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1", + "https://bioregistry.io/schema/#0000008": "^NONHSAG\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=NONHSAG00001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "noncodev4.gene" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/biolink", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/registry/hinv.transcript", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "H-InvDb Transcript" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/confident.series" + "@id": "https://registry.identifiers.org/registry/hinv.transcript" }, { - "@id": "https://bioregistry.io/registry/homologene" + "@id": "https://bioregistry.io/metaregistry/biocontext/HINV.TRANSCRIPT" }, { - "@id": "https://bioregistry.io/registry/dinto" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.transcript" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://h-invitational.jp/hinv/ahg-db/index.jsp" + }, + "https://bioregistry.io/schema/#0000005": "HIT000195363", + "https://bioregistry.io/schema/#0000006": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1", + "https://bioregistry.io/schema/#0000008": "^HIT\\d{9}(\\.\\d+)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=HIT000195363" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hinv.transcript" + } + }, + { + "@id": "http://www.wikidata.org/entity/P4394", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/COG_Pathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DOOR", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arachnoserver", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TOPFIND", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/scretf", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/odc.sci", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Open Data Commons for Spinal Cord Injury" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dlxb" + "@id": "https://www.re3data.org/repository/r3d100014071" }, { - "@id": "https://bioregistry.io/registry/iev" + "@id": "https://registry.identifiers.org/registry/odc.sci" }, { - "@id": "https://bioregistry.io/registry/viperdb" - }, + "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/swh" + "@value": "neurology" }, { - "@id": "https://bioregistry.io/registry/xenbase" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/mmsinc" + "@value": "neuroscience" }, { - "@id": "https://bioregistry.io/registry/4dn.replicate" - }, + "@value": "neurobiology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://odc-sci.org" + }, + "https://bioregistry.io/schema/#0000005": "602", + "https://bioregistry.io/schema/#0000006": "https://odc-sci.org/data/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]*$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5212-7052" + }, + "https://bioregistry.io/schema/#0000024": "https://odc-sci.org/data/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://odc-sci.org/data/602" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "odc.sci" + } + }, + { + "@id": "https://bioregistry.io/registry/oba", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/bio-attribute-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of Biological Attributes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/evm" + "@id": "https://www.obofoundry.org/ontology/oba" }, { - "@id": "https://bioregistry.io/registry/flowrepository" + "@id": "https://bioportal.bioontology.org/ontologies/OBA" }, { - "@id": "https://bioregistry.io/registry/nomen" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBA" }, { - "@id": "https://bioregistry.io/registry/s_mart_db" + "@id": "https://fairsharing.org/FAIRsharing.mp0rwf" }, { - "@id": "https://bioregistry.io/registry/conso" + "@id": "http://aber-owl.net/ontology/OBA" }, { - "@id": "https://bioregistry.io/registry/co_343" + "@id": "http://www.ontobee.org/ontology/OBA" }, { - "@id": "https://bioregistry.io/registry/mcc" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/hog" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/uniprot.location" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/vgnc" - }, + "@value": "biology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/obophenotype/bio-attribute-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBA_$1", + "https://bioregistry.io/schema/#0000008": "^(VT)?\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/oba.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/fovt" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBA_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/OBA_0000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oba" + } + }, + { + "@id": "https://bioregistry.io/registry/4dn.biosource", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "4D Nucleome Data Portal Biosource" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/viaf" + "@id": "https://registry.bio2kg.org/resource/4dn" }, { - "@id": "https://bioregistry.io/registry/fbrf" + "@id": "https://fairsharing.org/FAIRsharing.CugtbQ" }, { - "@id": "https://bioregistry.io/registry/combine.specifications" + "@id": "https://registry.identifiers.org/registry/4dn" }, { - "@id": "https://bioregistry.io/registry/gmd.ref" - }, + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/4DN" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/neuronames" + "@value": "dna" }, { - "@id": "https://bioregistry.io/registry/mondo" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/vandf" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://data.4dnucleome.org/biosources" + }, + "https://bioregistry.io/schema/#0000005": "4DNSR73BT2A2", + "https://bioregistry.io/schema/#0000006": "https://data.4dnucleome.org/biosources/$1", + "https://bioregistry.io/schema/#0000008": "^4DN[A-Z]{2}[A-Z0-9]{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "4DN" + }, + "https://bioregistry.io/schema/#0000024": "https://data.4dnucleome.org/biosources/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://data.4dnucleome.org/biosources/4DNSR73BT2A2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "4dn.biosource" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.anpa6", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bartoc.org/en/node/18206", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "http://edamontology.org/data_2325", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.yk1krv", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/BCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CMPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/efo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/phytozome.locus", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/cmo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Clinical measurement ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/narcis" + "@id": "https://bioportal.bioontology.org/ontologies/CMO" }, { - "@id": "https://bioregistry.io/registry/foodb.food" + "@id": "http://www.ontobee.org/ontology/CMO" }, { - "@id": "https://bioregistry.io/registry/icd9" + "@id": "https://www.obofoundry.org/ontology/cmo" }, { - "@id": "https://bioregistry.io/registry/aop.events" + "@id": "http://aber-owl.net/ontology/CMO" }, { - "@id": "https://bioregistry.io/registry/geo" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo" }, { - "@id": "https://bioregistry.io/registry/ascl" + "@id": "https://bioregistry.io/metaregistry/biocontext/CMO" }, { - "@id": "https://bioregistry.io/registry/ssbd.dataset" - }, + "@id": "https://fairsharing.org/FAIRsharing.dq78pn" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/gold" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/pennsieve" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/biomodels.db" + "@value": "preclinical studies" }, { - "@id": "https://bioregistry.io/registry/nextprot" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/biosample" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rgd.mcw.edu/rgdweb/ontology/search.html" + }, + "https://bioregistry.io/schema/#0000005": "0001350", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CMO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/cmo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-6443-9376" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CMO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CMO_0001350" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cmo" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9c1p18", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/iresite", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of experimentally verified IRES structures" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/uniprot.resource" + "@id": "https://fairsharing.org/FAIRsharing.kd39j4" }, { - "@id": "https://bioregistry.io/registry/omim.ps" - }, + "@id": "https://registry.bio2kg.org/resource/iresite" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/protonet.proteincard" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/jstor" + "@value": "rna" }, { - "@id": "https://bioregistry.io/registry/ndc" - }, + "@value": "regulation" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.iresite.org" + }, + "https://bioregistry.io/schema/#0000005": "322", + "https://bioregistry.io/schema/#0000006": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.iresite.org/IRESite_web.php?page=view&entry_id=322" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "iresite" + } + }, + { + "@id": "http://aber-owl.net/ontology/GENEPIO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010617", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.vajn3f", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/spdx", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Software Package Data Exchange License" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/cordis.article" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/spdx" }, { - "@id": "https://bioregistry.io/registry/siren" - }, + "@id": "https://registry.identifiers.org/registry/spdx" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://spdx.org/licenses" + }, + "https://bioregistry.io/schema/#0000005": "CC-BY-1.0", + "https://bioregistry.io/schema/#0000006": "https://spdx.org/licenses/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9A-Za-z\\-.]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://spdx.org/licenses/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://spdx.org/licenses/CC-BY-1.0" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "spdx" + } + }, + { + "@id": "https://registry.identifiers.org/registry/metanetx.compartment", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/d1id", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DataONE" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/genetree" + "@id": "https://registry.identifiers.org/registry/d1id" }, { - "@id": "https://bioregistry.io/registry/dhba" + "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID" }, { - "@id": "https://bioregistry.io/registry/gmd.profile" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.dataone.org" + }, + "https://bioregistry.io/schema/#0000005": "00030692-0FE1-4A1B-955E-A2E55D659267", + "https://bioregistry.io/schema/#0000006": "https://cn.dataone.org/cn/v2/resolve/{$1}", + "https://bioregistry.io/schema/#0000008": "^\\S+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/d1id:", + "https://bioregistry.io/schema/#0000029": { + "@value": "d1id" + } + }, + { + "@id": "https://bioregistry.io/registry/rhea", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Rhea, the Annotated Reactions Database" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/mmp.cat" + "@id": "https://www.re3data.org/repository/r3d100010891" }, { - "@id": "https://bioregistry.io/registry/decipher" + "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA" }, { - "@id": "https://bioregistry.io/registry/utrdb" + "@id": "http://edamontology.org/data_2644" }, { - "@id": "https://bioregistry.io/registry/cbioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext/RHEA" }, { - "@id": "https://bioregistry.io/registry/pombase" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rhea" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.cell" + "@id": "https://registry.identifiers.org/registry/rhea" }, { - "@id": "https://bioregistry.io/registry/igsn" + "@id": "https://fairsharing.org/FAIRsharing.pn1sr5" }, { - "@id": "https://bioregistry.io/registry/gdsc" - }, + "@id": "https://registry.bio2kg.org/resource/rhea" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/imanis" + "@value": "biochemistry" }, { - "@id": "https://bioregistry.io/registry/biomodels.teddy" + "@value": "small molecule" }, { - "@id": "https://bioregistry.io/registry/miriam.resource" + "@value": "reaction" }, { - "@id": "https://bioregistry.io/registry/csp" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.rhea-db.org/" + }, + "https://bioregistry.io/schema/#0000005": "12345", + "https://bioregistry.io/schema/#0000006": "https://www.rhea-db.org/rhea/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{5}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1216-2969" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "RHEA" + }, + "https://bioregistry.io/schema/#0000024": "https://www.rhea-db.org/rhea/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.rhea-db.org/rhea/12345" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rhea" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCYC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SALMON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/4dn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://aber-owl.net/ontology/BCGO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-1118-1738", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "John Beverly" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "johnbeverley2021@u.northwestern.edu" + } + }, + { + "@id": "http://aber-owl.net/ontology/MFOMD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0038", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012627", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/oryzabase.mutant", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Oryzabase Mutant" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/idoden" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.mutant" }, { - "@id": "https://bioregistry.io/registry/co_345" + "@id": "https://registry.identifiers.org/registry/oryzabase.mutant" }, { - "@id": "https://bioregistry.io/registry/hl7.v2codesystem" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.MUTANT" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/" + }, + "https://bioregistry.io/schema/#0000005": "21393", + "https://bioregistry.io/schema/#0000006": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/21393" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oryzabase.mutant" + } + }, + { + "@id": "https://bioregistry.io/registry/panther", + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/dommino" + "@id": "https://bioregistry.io/registry/panther.pathway" }, { - "@id": "https://bioregistry.io/registry/depmap" + "@id": "https://bioregistry.io/registry/panther.family" }, { - "@id": "https://bioregistry.io/registry/drugbank.category" + "@id": "https://bioregistry.io/registry/panther.pthcmp" }, { - "@id": "https://bioregistry.io/registry/graingenes.reference" - }, + "@id": "https://bioregistry.io/registry/panther.node" + } + ] + }, + { + "@id": "https://fairsharing.org/FAIRsharing.c23cqq", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/MFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.relationships", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Greengenes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cgd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/taxonomy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://aber-owl.net/ontology/FOODON", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/STATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/spbase", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SpBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/spbase" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/eggnog" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/nmrshiftdb2" + "@value": "dna" }, { - "@id": "https://bioregistry.io/registry/ma" - }, + "@value": "rna" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://spbase.org" + }, + "https://bioregistry.io/schema/#0000005": "SPU_000001", + "https://bioregistry.io/schema/#0000006": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=SPU_000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "spbase" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/mirbase.family", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "miRBase Families" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.mirbase.org/" + }, + "https://bioregistry.io/schema/#0000005": "MIPF0000002", + "https://bioregistry.io/schema/#0000006": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "MIRBASE_FAMILY" + }, + "https://bioregistry.io/schema/#0000024": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=MIPF0000002" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "mirbase.family" + } + }, + { + "@id": "https://orcid.org/0000-0001-6690-5863", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Haruki Nakamura" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "harukin@protein.osaka-u.ac.jp" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PubChem_BioAssay", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/niaest", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PEPTIDEATLAS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-8457-6693", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bjoern Peters" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bpeters@lji.org" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/BCGO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9d5f5r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://orcid.org/0000-0002-1048-5019", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Matthew Brush" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://bioregistry.io/registry/iceberg.cime" + "@value": "mhb120@gmail.com" }, { - "@id": "https://bioregistry.io/registry/mesh.2012" - }, + "@value": "matt@tislab.org" + } + ] + }, + { + "@id": "http://aber-owl.net/ontology/INO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LRG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/BFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bioregistry.io/registry/complexportal", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Complex Portal" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/xco" + "@id": "https://bioregistry.io/metaregistry/biocontext/COMPLEXPORTAL" }, { - "@id": "https://bioregistry.io/registry/flu" + "@id": "http://www.wikidata.org/entity/P7718" }, { - "@id": "https://bioregistry.io/registry/prefixcommons" + "@id": "https://registry.identifiers.org/registry/complexportal" }, { - "@id": "https://bioregistry.io/registry/ietf.language" + "@id": "https://bioregistry.io/metaregistry/go/resolve/ComplexPortal" }, { - "@id": "https://bioregistry.io/registry/hc.trial" + "@id": "https://www.uniprot.org/database/DB-0228" }, { - "@id": "https://bioregistry.io/registry/chembl.compound" + "@id": "https://www.re3data.org/repository/r3d100013295" }, { - "@id": "https://bioregistry.io/registry/merops.clan" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ComplexPortal" }, { - "@id": "https://bioregistry.io/registry/iceberg.element" - }, + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ebi.ac.uk/complexportal" + }, + "https://bioregistry.io/schema/#0000005": "CPX-263", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/complexportal/complex/$1", + "https://bioregistry.io/schema/#0000008": "^CPX-[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "ComplexPortal" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/complexportal/complex/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/complexportal/complex/CPX-263" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "complexportal" + } + }, + { + "@id": "https://orcid.org/0000-0001-7954-7057", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Guy Cochrane" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "datasubs@ebi.ac.uk" + } + }, + { + "@id": "https://bioregistry.io/registry/nmpdr", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "National Microbial Pathogen Data Resource" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/comptox" + "@id": "https://registry.bio2kg.org/resource/nmpdr" }, { - "@id": "https://bioregistry.io/registry/toxoplasma" - }, + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.nmpdr.org" + }, + "https://bioregistry.io/schema/#0000005": "fig|306254.1.peg.183", + "https://bioregistry.io/schema/#0000006": "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=", + "https://bioregistry.io/schema/#0000029": { + "@value": "nmpdr" + } + }, + { + "@id": "https://bioregistry.io/registry/vhog", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 \"historical homology\". Each mapping has been manually reviewed, and we provide confidence codes and references when available.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Vertebrate Homologous Organ Group Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dideo" + "@id": "https://bioportal.bioontology.org/ontologies/VHOG" }, { - "@id": "https://bioregistry.io/registry/hpm.peptide" + "@id": "https://registry.bio2kg.org/resource/vhog" }, { - "@id": "https://bioregistry.io/registry/jrct" + "@id": "https://bioregistry.io/metaregistry/biocontext/VHOG" }, { - "@id": "https://bioregistry.io/registry/ncim" + "@id": "http://aber-owl.net/ontology/VHOG" }, { - "@id": "https://bioregistry.io/registry/apd" - }, + "@id": "https://www.obofoundry.org/ontology/vhog" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/sasbdb" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/storedb" + "@value": "development" }, { - "@id": "https://bioregistry.io/registry/peptideatlas.dataset" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/arrayexpress.platform" - }, + "@value": "anatomy" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://bgee.unil.ch" + }, + "https://bioregistry.io/schema/#0000005": "0000411", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VHOG_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vhog.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N92cb3dfb7c5b426f8caf565b44bc8ab9" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "VHOG_RETIRED" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VHOG_", + "https://bioregistry.io/schema/#0000029": { + "@value": "vhog" + } + }, + { + "@id": "_:N92cb3dfb7c5b426f8caf565b44bc8ab9", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bgee team" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "bgee@isb-sib.ch" + } + }, + { + "@id": "http://aber-owl.net/ontology/HP_O", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://orcid.org/0000-0002-5316-1399", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sebastian Koehler" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dr.sebastian.koehler@gmail.com" + } + }, + { + "@id": "http://aber-owl.net/ontology/SPD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/oban", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/OBAN" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Open Biomedical Annotations" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ymdb" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN" }, { - "@id": "https://bioregistry.io/registry/ontoneo" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/OBAN" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/EBISPOT/OBAN" + }, + "https://bioregistry.io/schema/#0000005": "provenance", + "https://bioregistry.io/schema/#0000006": "http://purl.org/oban/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/EBISPOT/OBAN/master/ontology/oban_core.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://purl.org/oban/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.org/oban/provenance" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "oban" + } + }, + { + "@id": "https://orcid.org/0000-0002-2100-6351", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Carrine Blank" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "carrine.blank@umontana.edu" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirtarbase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/sao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/tads", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The anatomy of the Tick, Families: Ixodidae, Argassidae", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VEuPathDB-ontology/TADS" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tick Anatomy Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/habronattus" + "@id": "http://aber-owl.net/ontology/TADS" }, { - "@id": "https://bioregistry.io/registry/uniprot.var" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads" }, { - "@id": "https://bioregistry.io/registry/xuo" + "@id": "https://bioregistry.io/metaregistry/biocontext/TADS" }, { - "@id": "https://bioregistry.io/registry/pigqtldb" + "@id": "https://www.obofoundry.org/ontology/tads" }, { - "@id": "https://bioregistry.io/registry/dashr" + "@id": "https://fairsharing.org/FAIRsharing.8wm364" }, { - "@id": "https://bioregistry.io/registry/enm" + "@id": "http://www.ontobee.org/ontology/TADS" }, { - "@id": "https://bioregistry.io/registry/ncbigene" - }, + "@id": "https://bioportal.bioontology.org/ontologies/TADS" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/hinv.locus" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/ped.ensemble" + "@value": "anatomy" }, { - "@id": "https://bioregistry.io/registry/metacyc.reaction" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/piroplasma" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.vectorbase.org/ontology-browser" + }, + "https://bioregistry.io/schema/#0000005": "0000547", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TADS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/tads.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9370-918X" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TADS_", + "https://bioregistry.io/schema/#0000029": { + "@value": "tads" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CLO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_359", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/agroportal" + } + }, + { + "@id": "https://bartoc.org/en/node/20299", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TRICHDB", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/duo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DUO is an ontology which represent data use conditions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/EBISPOT/DUO" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Data Use Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://fairsharing.org/FAIRsharing.5dnjs2" }, { - "@id": "https://bioregistry.io/registry/nlx.cell" + "@id": "https://bioregistry.io/metaregistry/biocontext/DUO" }, { - "@id": "https://bioregistry.io/registry/neurolex" + "@id": "https://www.obofoundry.org/ontology/duo" }, { - "@id": "https://bioregistry.io/registry/uspto" + "@id": "http://aber-owl.net/ontology/DUO" }, { - "@id": "https://bioregistry.io/registry/imr" + "@id": "https://bioportal.bioontology.org/ontologies/DUO" }, { - "@id": "https://bioregistry.io/registry/biomagresbank" + "@id": "http://www.ontobee.org/ontology/DUO" }, { - "@id": "https://bioregistry.io/registry/uniprot" - }, + "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/mfomd" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/fossilworks.journal" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/hms.lincs.cell" - }, + "@value": "subject agnostic" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/EBISPOT/DUO" + }, + "https://bioregistry.io/schema/#0000005": "0000046", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/DUO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/duo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/gitlab" + "@id": "https://bioregistry.io/registry/iao" }, { - "@id": "https://bioregistry.io/registry/gwascentral.marker" - }, + "@id": "https://bioregistry.io/registry/bfo" + } + ], + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9551-6370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/DUO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/DUO_0000046" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "duo" + } + }, + { + "@id": "https://bioregistry.io/registry/tcb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tick Cell Biobank" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TCB" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.pirbright.ac.uk/tick-cell-lines-views-page" + }, + "https://bioregistry.io/schema/#0000005": "2966", + "https://bioregistry.io/schema/#0000006": "https://www.pirbright.ac.uk/node/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.pirbright.ac.uk/node/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.pirbright.ac.uk/node/2966" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tcb" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/collection/0000006", + "@type": "https://bioregistry.io/schema/#0000003", + "http://purl.org/dc/elements/1.1/creator": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "http://purl.org/dc/elements/1.1/description": { + "@value": "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF." + }, + "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/ccdc" + "@id": "https://bioregistry.io/registry/frapo" }, { - "@id": "https://bioregistry.io/registry/ino" + "@id": "https://bioregistry.io/registry/datacite" }, { - "@id": "https://bioregistry.io/registry/bbkg" + "@id": "https://bioregistry.io/registry/bido" }, { - "@id": "https://bioregistry.io/registry/stn" + "@id": "https://bioregistry.io/registry/puro" }, { - "@id": "https://bioregistry.io/registry/funcbase.human" + "@id": "https://bioregistry.io/registry/pso" }, { - "@id": "https://bioregistry.io/registry/ncbiprotein" + "@id": "https://bioregistry.io/registry/fabio" }, { - "@id": "https://bioregistry.io/registry/iuphar.family" + "@id": "https://bioregistry.io/registry/c4o" }, { - "@id": "https://bioregistry.io/registry/wikidata.property" + "@id": "https://bioregistry.io/registry/scoro" }, { - "@id": "https://bioregistry.io/registry/eugenes" + "@id": "https://bioregistry.io/registry/pwo" }, { - "@id": "https://bioregistry.io/registry/cabri" + "@id": "https://bioregistry.io/registry/deo" }, { - "@id": "https://bioregistry.io/registry/pathbank" + "@id": "https://bioregistry.io/registry/biro" }, { - "@id": "https://bioregistry.io/registry/tads" + "@id": "https://bioregistry.io/registry/cito" }, { - "@id": "https://bioregistry.io/registry/ligandbox" - }, + "@id": "https://bioregistry.io/registry/doco" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SPAR Ontologies" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/PMCID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ega.study", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/flopo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Traits and phenotypes of flowering plants occurring in digitized Floras", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/flora-phenotype-ontology/flopoontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Flora Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/taxrank" + "@id": "https://fairsharing.org/FAIRsharing.ny9vnm" }, { - "@id": "https://bioregistry.io/registry/rapdb.transcript" + "@id": "http://www.ontobee.org/ontology/FLOPO" }, { - "@id": "https://bioregistry.io/registry/ricenetdb.compound" + "@id": "http://aber-owl.net/ontology/FLOPO" }, { - "@id": "https://bioregistry.io/registry/alfred" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo" }, { - "@id": "https://bioregistry.io/registry/virsirna" + "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO" }, { - "@id": "https://bioregistry.io/registry/unipathway.reaction" + "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO" }, { - "@id": "https://bioregistry.io/registry/img.gene" + "@id": "https://www.obofoundry.org/ontology/flopo" }, { - "@id": "https://bioregistry.io/registry/gaz" - }, + "@id": "https://bioportal.bioontology.org/ontologies/FLOPO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/sheepqtldb" + "@value": "botany" }, { - "@id": "https://bioregistry.io/registry/snp2tfbs" + "@value": "biodiversity" }, { - "@id": "https://bioregistry.io/registry/ydpm" + "@value": "plant anatomy" }, { - "@id": "https://bioregistry.io/registry/dailymed" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/plasmodb" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/flora-phenotype-ontology/flopoontology" + }, + "https://bioregistry.io/schema/#0000005": "0005250", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FLOPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/flopo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8149-5890" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FLOPO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FLOPO_0005250" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "flopo" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CONOSERVER", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/insdc.gca", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/gsfa", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "General Standard for Food Additives Online Database" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.fao.org/gsfaonline" + }, + "https://bioregistry.io/schema/#0000005": "174", + "https://bioregistry.io/schema/#0000006": "http://www.fao.org/gsfaonline/additives/details.html?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "FAO/WHO_standards" + }, + "https://bioregistry.io/schema/#0000024": "http://www.fao.org/gsfaonline/additives/details.html?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.fao.org/gsfaonline/additives/details.html?id=174" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gsfa" + } + }, + { + "@id": "https://bioregistry.io/registry/exo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/CTDbase/exposure-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Exposure ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/skos" + "@id": "http://www.ontobee.org/ontology/ExO" }, { - "@id": "https://bioregistry.io/registry/vsmo" + "@id": "https://www.obofoundry.org/ontology/exo" }, { - "@id": "https://bioregistry.io/registry/anzctr" + "@id": "https://bioregistry.io/metaregistry/biocontext/EXO" }, { - "@id": "https://bioregistry.io/registry/void" + "@id": "https://fairsharing.org/FAIRsharing.6hna78" }, { - "@id": "https://bioregistry.io/registry/rs" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ExO" }, { - "@id": "https://bioregistry.io/registry/aspgd.protein" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo" }, { - "@id": "https://bioregistry.io/registry/metatlas.reaction" + "@id": "https://bioportal.bioontology.org/ontologies/EXO" }, { - "@id": "https://bioregistry.io/registry/ehdaa2" - }, + "@id": "http://aber-owl.net/ontology/EXO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/iclc" + "@value": "toxicology" }, { - "@id": "https://bioregistry.io/registry/fbdv" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/rnacentral" + "@value": "epigenetics" }, { - "@id": "https://bioregistry.io/registry/isbn" + "@value": "environmental science" }, { - "@id": "https://bioregistry.io/registry/umbbd.pathway" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/CTDbase/exposure-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0000078", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ExO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/exo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/nif.ext" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/registry/bco" - }, + "@id": "https://bioregistry.io/registry/ecto" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2908-3327" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "ExO" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ExO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ExO_0000078" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "exo" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.edxb58", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biogrid", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/nbrc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/pw", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/rat-genome-database/PW-Pathway-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pathway ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nmpdr" + "@id": "https://registry.identifiers.org/registry/pw" }, { - "@id": "https://bioregistry.io/registry/microsporidia" + "@id": "https://fairsharing.org/FAIRsharing.f73xhd" }, { - "@id": "https://bioregistry.io/registry/sasap" + "@id": "https://registry.bio2kg.org/resource/pw" }, { - "@id": "https://bioregistry.io/registry/cryptodb" + "@id": "https://bioregistry.io/metaregistry/biocontext/PW" }, { - "@id": "https://bioregistry.io/registry/gpmdb" + "@id": "http://www.ontobee.org/ontology/PW" }, { - "@id": "https://bioregistry.io/registry/mco" + "@id": "http://aber-owl.net/ontology/PW" }, { - "@id": "https://bioregistry.io/registry/slkbase" + "@id": "https://bioportal.bioontology.org/ontologies/PW" }, { - "@id": "https://bioregistry.io/registry/archdb" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw" }, { - "@id": "https://bioregistry.io/registry/ligea" + "@id": "http://www.wikidata.org/entity/P7333" }, { - "@id": "https://bioregistry.io/registry/dg.4503" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw" }, { - "@id": "https://bioregistry.io/registry/google.scholar" - }, + "@id": "https://www.obofoundry.org/ontology/pw" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/bdsc" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/storedb.study" + "@value": "drug metabolism" }, { - "@id": "https://bioregistry.io/registry/wormbase" + "@value": "pathway" }, { - "@id": "https://bioregistry.io/registry/kegg.glycan" + "@value": "human" }, { - "@id": "https://bioregistry.io/registry/chemidplus" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/ecacc" - }, + "@value": "life science" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://rgd.mcw.edu/rgdweb/ontology/search.html" + }, + "https://bioregistry.io/schema/#0000005": "0000423", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PW_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/pw.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9553-7227" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PW_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/PW_0000423" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pw" + } + }, + { + "@id": "https://orcid.org/0000-0002-8878-3972", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sandra Orchard" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "orchard@ebi.ac.uk" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ezwdhz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/genefarm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GeneFarm" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/gemet" + "@id": "https://registry.identifiers.org/registry/genefarm" }, { - "@id": "https://bioregistry.io/registry/seed" + "@id": "https://fairsharing.org/FAIRsharing.2mayq0" }, { - "@id": "https://bioregistry.io/registry/zfin" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genefarm" }, { - "@id": "https://bioregistry.io/registry/xlmod" + "@id": "https://registry.bio2kg.org/resource/genefarm" }, { - "@id": "https://bioregistry.io/registry/genprop" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEFARM" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/dctypes" + "@value": "expression" }, { - "@id": "https://bioregistry.io/registry/cellimage" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/insdc.cds" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/mcro" + "@value": "sequence" }, { - "@id": "https://bioregistry.io/registry/cohd" - }, + "@value": "nucleotide" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://urgi.versailles.inra.fr/Genefarm/" + }, + "https://bioregistry.io/schema/#0000005": "4892", + "https://bioregistry.io/schema/#0000006": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=4892" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genefarm" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/hdr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.t1a232", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/FYPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/CORUM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/VT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bold.taxonomy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Patent", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://registry.identifiers.org/registry/jcm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MYCO.LEPRA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0221", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/cheminf", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/semanticchemistry/semanticchemistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Chemical Information Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/dip" + "@id": "http://www.ontobee.org/ontology/CHEMINF" }, { - "@id": "https://bioregistry.io/registry/vfb" + "@id": "http://aber-owl.net/ontology/CHEMINF" }, { - "@id": "https://bioregistry.io/registry/vdrc" + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMINF" }, { - "@id": "https://bioregistry.io/registry/dictybase.gene" + "@id": "https://www.obofoundry.org/ontology/cheminf" }, { - "@id": "https://bioregistry.io/registry/nkos" + "@id": "https://bioportal.bioontology.org/ontologies/CHEMINF" }, { - "@id": "https://bioregistry.io/registry/scop.sid" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf" }, { - "@id": "https://bioregistry.io/registry/pharmacodb.tissue" - }, + "@id": "https://fairsharing.org/FAIRsharing.sjhvyy" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/disdriv" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/phosphosite.protein" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/resid" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/clb" + "@value": "chemistry" }, { - "@id": "https://bioregistry.io/registry/ukprn" - }, + "@value": "biochemistry" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/semanticchemistry/semanticchemistry" + }, + "https://bioregistry.io/schema/#0000005": "000410", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHEMINF_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://github.com/semanticchemistry/semanticchemistry/raw/master/ontology/cheminf.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/proco" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-7542-0286" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHEMINF_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/CHEMINF_000410" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cheminf" + } + }, + { + "@id": "https://orcid.org/0000-0002-0294-5484", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Mendez Lopez" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dmendez@ebi.ac.uk" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.40j2vd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/go", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/STAP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.wikidata.org/entity/P233", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/mat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/CRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "http://aber-owl.net/ontology/SCHEMAORG", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/ECAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/MCO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/fypo", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A formal ontology of phenotypes observed in fission yeast.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/pombase/fypo" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Fission Yeast Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/oban" + "@id": "http://www.ontobee.org/ontology/FYPO" }, { - "@id": "https://bioregistry.io/registry/bitterdb.cpd" + "@id": "http://aber-owl.net/ontology/FYPO" }, { - "@id": "https://bioregistry.io/registry/iuphar.ligand" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/FYPO" }, { - "@id": "https://bioregistry.io/registry/giardiadb" + "@id": "https://bioregistry.io/metaregistry/biocontext/FYPO" }, { - "@id": "https://bioregistry.io/registry/nando" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo" }, { - "@id": "https://bioregistry.io/registry/hom" + "@id": "https://www.obofoundry.org/ontology/fypo" }, { - "@id": "https://bioregistry.io/registry/imotdb" + "@id": "https://bioregistry.io/metaregistry/go/resolve/FYPO" }, { - "@id": "https://bioregistry.io/registry/csa" + "@id": "https://fairsharing.org/FAIRsharing.4vr0ys" }, { - "@id": "https://bioregistry.io/registry/intact" - }, + "@id": "https://bioportal.bioontology.org/ontologies/FYPO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ximbio" + "@value": "phylogenetics" }, { - "@id": "https://bioregistry.io/registry/colonatlas" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/registry/multicellds.cell_line" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/come" + "@value": "life science" }, { - "@id": "https://bioregistry.io/registry/grassbase" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/pombase/fypo" + }, + "https://bioregistry.io/schema/#0000005": "0001707", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FYPO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fypo.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-6330-7526" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FYPO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FYPO_0001707" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fypo" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc.symbol", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/hp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/human-phenotype-ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Human Phenotype Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/aaindex" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hp" }, { - "@id": "https://bioregistry.io/registry/clinvar.submission" + "@id": "https://bioportal.bioontology.org/ontologies/HP_O" }, { - "@id": "https://bioregistry.io/registry/idpo" + "@id": "http://www.wikidata.org/entity/P3841" }, { - "@id": "https://bioregistry.io/registry/bykdb" + "@id": "https://bartoc.org/en/node/1937" }, { - "@id": "https://bioregistry.io/registry/scop" + "@id": "https://registry.identifiers.org/registry/hp" }, { - "@id": "https://bioregistry.io/registry/mf" + "@id": "https://fairsharing.org/FAIRsharing.kbtt7f" }, { - "@id": "https://bioregistry.io/registry/rtecs" + "@id": "http://aber-owl.net/ontology/HP_O" }, { - "@id": "https://bioregistry.io/registry/pepbank" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.339" }, { - "@id": "https://bioregistry.io/registry/gmelin" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp" }, { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPO" }, { - "@id": "https://bioregistry.io/registry/om" + "@id": "http://www.ontobee.org/ontology/HP" }, { - "@id": "https://bioregistry.io/registry/tair.locus" - }, + "@id": "https://www.obofoundry.org/ontology/hp" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/mamo" + "@value": "genetics" }, { - "@id": "https://bioregistry.io/registry/bioschemas" + "@value": "phenomics" }, { - "@id": "https://bioregistry.io/registry/probesanddrugs" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/npass" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/panorama" + "@value": "preclinical studies" }, { - "@id": "https://bioregistry.io/registry/refseq" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.human-phenotype-ontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "0011140", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/hp.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/symp" + "@id": "https://bioregistry.io/registry/scdo" }, { - "@id": "https://bioregistry.io/registry/rex" + "@id": "https://bioregistry.io/registry/maxo" }, { - "@id": "https://bioregistry.io/registry/salk" - }, + "@id": "https://bioregistry.io/registry/chiro" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5316-1399" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "hpo" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HP_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/HP_0011140" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hp" + } + }, + { + "@id": "https://bioregistry.io/registry/tkg", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tohoku University cell line catalog" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/TKG" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www2.idac.tohoku.ac.jp/dep/ccr/" + }, + "https://bioregistry.io/schema/#0000005": "0221", + "https://bioregistry.io/schema/#0000006": "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/tkg:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/0221.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tkg" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.1", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/px", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bacmap.biog", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/virsirna", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/ecogene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Escherichia coli Sequence and Function" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/faldo" + "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene" }, { - "@id": "https://bioregistry.io/registry/po" + "@id": "https://www.re3data.org/repository/r3d100010546" }, { - "@id": "https://bioregistry.io/registry/aceview.worm" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene" }, { - "@id": "https://bioregistry.io/registry/cp" + "@id": "https://registry.identifiers.org/registry/ecogene" }, { - "@id": "https://bioregistry.io/registry/cath.superfamily" + "@id": "https://fairsharing.org/FAIRsharing.3q3kvn" }, { - "@id": "https://bioregistry.io/registry/nucc.taxonomy" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene" }, { - "@id": "https://bioregistry.io/registry/exac.transcript" - }, + "@id": "https://registry.bio2kg.org/resource/ecogene" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/kclb" + "@value": "genome" }, { - "@id": "https://bioregistry.io/registry/pfr" - }, + "@value": "protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ecogene.org/" + }, + "https://bioregistry.io/schema/#0000005": "EG10173", + "https://bioregistry.io/schema/#0000006": "http://www.ecogene.org/gene/$1", + "https://bioregistry.io/schema/#0000008": "^EG\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.ecogene.org/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.ecogene.org/gene/EG10173" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecogene" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PFAM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ratmap", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/QUDT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SNOMEDCT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/iev", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.dyqz3y", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/img.taxon", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/HP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100011277", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://registry.identifiers.org/registry/smart", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/wbls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ec-code", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TARBASE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/genepio", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/GenEpiO/genepio" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genomic Epidemiology Ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/graingenes.symbol" + "@id": "https://fairsharing.org/FAIRsharing.y1mmbv" }, { - "@id": "https://bioregistry.io/registry/ccle" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio" }, { - "@id": "https://bioregistry.io/registry/fbbt" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO" }, { - "@id": "https://bioregistry.io/registry/co_340" + "@id": "https://www.obofoundry.org/ontology/genepio" }, { - "@id": "https://bioregistry.io/registry/biolink" + "@id": "http://www.ontobee.org/ontology/GENEPIO" }, { - "@id": "https://bioregistry.io/registry/tcdb" - }, + "@id": "http://aber-owl.net/ontology/GENEPIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/ygob" + "@value": "genomics" }, { - "@id": "https://bioregistry.io/registry/msio" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/smiles" + "@value": "obo" }, { - "@id": "https://bioregistry.io/registry/hogenom" - }, + "@value": "epidemiology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://genepio.org/" + }, + "https://bioregistry.io/schema/#0000005": "0001885", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GENEPIO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/genepio.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/registry/yeastract" + "@id": "https://bioregistry.io/registry/po" }, { - "@id": "https://bioregistry.io/registry/drks" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/registry/eco" + "@id": "https://bioregistry.io/registry/ncbitaxon" }, { - "@id": "https://bioregistry.io/registry/nlx.org" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioregistry.io/registry/fivestars" - }, + "@id": "https://bioregistry.io/registry/chebi" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8844-9165" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GENEPIO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/GENEPIO_0001885" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "genepio" + } + }, + { + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/hl7" + } + }, + { + "@id": "https://registry.identifiers.org/registry/ensembl.bacteria", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://www.ontobee.org/ontology/CDAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ICD10CM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/intenz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/sedml.language", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML).", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "SED-ML model format" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/sedml.language" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://sed-ml.org/" + }, + "https://bioregistry.io/schema/#0000005": "sbml.level-3.version-2", + "https://bioregistry.io/schema/#0000006": "https://sed-ml.org/urns.html#language:$1", + "https://bioregistry.io/schema/#0000008": "^[a-z]+(\\..*?)?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://sed-ml.org/urns.html#language:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://sed-ml.org/urns.html#language:sbml.level-3.version-2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sedml.language" + } + }, + { + "@id": "http://aber-owl.net/ontology/MEDDRA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr.expression", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/matrixdb.association", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "http://www.wikidata.org/entity/P652", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.protist", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/dbvar.study", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Studies in dbVar.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of Genomic Structural Variation - Study" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.ncbi.nlm.nih.gov/dbvar" + }, + "https://bioregistry.io/schema/#0000005": "nstd102", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "dbvar.studies" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/dbvar/studies/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ncbi.nlm.nih.gov/dbvar/studies/nstd102" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "dbvar.study" + } + }, + { + "@id": "https://bioregistry.io/registry/multicellds.snapshot", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/dragondb.dna" + "@id": "https://bioregistry.io/registry/multicellds" }, { - "@id": "https://bioregistry.io/registry/uniprot.proteome" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MultiCellDS Digital snapshot" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ncbi.genome" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/multicellds.snapshot" }, { - "@id": "https://bioregistry.io/registry/rdf" + "@id": "https://bioregistry.io/metaregistry/biocontext/MULTICELLDS.SNAPSHOT" }, { - "@id": "https://bioregistry.io/registry/bs" - }, + "@id": "https://registry.identifiers.org/registry/multicellds.snapshot" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://multicellds.org/MultiCellDB.php" + }, + "https://bioregistry.io/schema/#0000005": "MCDS_S_0000000001", + "https://bioregistry.io/schema/#0000006": "http://multicellds.org/MultiCellDB/$1", + "https://bioregistry.io/schema/#0000008": "^MCDS_S_[a-zA-Z0-9]{1,10}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://multicellds.org/MultiCellDB/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://multicellds.org/MultiCellDB/MCDS_S_0000000001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "multicellds.snapshot" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/gramene.qtl", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Gramene QTL" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/signor" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRAMENE.QTL" }, { - "@id": "https://bioregistry.io/registry/hipsci" + "@id": "https://registry.identifiers.org/registry/gramene.qtl" }, { - "@id": "https://bioregistry.io/registry/gfo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gramene.qtl" }, { - "@id": "https://bioregistry.io/registry/clinvar.record" - }, + "@id": "https://bioregistry.io/metaregistry/go/resolve/GR_QTL" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.gramene.org/" + }, + "https://bioregistry.io/schema/#0000005": "CQG5", + "https://bioregistry.io/schema/#0000006": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "GR_QTL" + }, + "https://bioregistry.io/schema/#0000024": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=CQG5" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gramene.qtl" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q9j2e3", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/jaxmice", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "JAX Mice" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/neurondb" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jaxmice" }, { - "@id": "https://bioregistry.io/registry/ico" + "@id": "https://registry.identifiers.org/registry/jaxmice" }, { - "@id": "https://bioregistry.io/registry/gramene.gene" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/JAXMICE" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://jaxmice.jax.org/" + }, + "https://bioregistry.io/schema/#0000005": "005012", + "https://bioregistry.io/schema/#0000006": "http://jaxmice.jax.org/strain/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/jaxmice:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://jaxmice.jax.org/strain/005012.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "jaxmice" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010228", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/registry/gtex", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Genotype-Tissue Expression" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/ricenetdb.gene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gtex" }, { - "@id": "https://bioregistry.io/registry/togovar" + "@id": "https://registry.identifiers.org/registry/gtex" }, { - "@id": "https://bioregistry.io/registry/tao" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GTEx" }, { - "@id": "https://bioregistry.io/registry/pwo" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/GTEX" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.gtexportal.org" + }, + "https://bioregistry.io/schema/#0000005": "BRIP1", + "https://bioregistry.io/schema/#0000006": "https://www.gtexportal.org/home/gene/$1", + "https://bioregistry.io/schema/#0000008": "^\\w.+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.gtexportal.org/home/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.gtexportal.org/home/gene/BRIP1" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gtex" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_322", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://bartoc.org/en/node/1937", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/insdc.cds", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.GENE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/APOLLO-SV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/hc.din", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Health Canada Drug Identification Number" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://oid-info.com/get/2.16.840.1.113883.5.1105" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.canada.ca/en/health-canada/services/drugs-health-products/drug-products/fact-sheets/drug-identification-number.html" + }, + "https://bioregistry.io/schema/#0000005": "02069237", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "hc.din" + } + }, + { + "@id": "https://bioregistry.io/registry/icd10", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "International Classification of Diseases, 10th Revision" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/eaglei" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.3" }, { - "@id": "https://bioregistry.io/registry/labo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/icd" }, { - "@id": "https://bioregistry.io/registry/nbn" + "@id": "https://bartoc.org/en/node/447" }, { - "@id": "https://bioregistry.io/registry/transyt" + "@id": "https://registry.identifiers.org/registry/icd" }, { - "@id": "https://bioregistry.io/registry/allergome" + "@id": "https://registry.bio2kg.org/resource/icd" }, { - "@id": "https://bioregistry.io/registry/ecolexicon" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ICD10" }, { - "@id": "https://bioregistry.io/registry/geogeo" + "@id": "https://fairsharing.org/FAIRsharing.nj16g" }, { - "@id": "https://bioregistry.io/registry/dgrc" + "@id": "http://aber-owl.net/ontology/ICD10" }, { - "@id": "https://bioregistry.io/registry/nemo" + "@id": "http://www.wikidata.org/entity/P494" }, { - "@id": "https://bioregistry.io/registry/iuphar.receptor" + "@id": "https://bioportal.bioontology.org/ontologies/ICD10" }, { - "@id": "https://bioregistry.io/registry/drugbank.salt" + "@id": "http://edamontology.org/data_2611" }, { - "@id": "https://bioregistry.io/registry/xsd" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext/ICD" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/erm" + "@value": "classification" }, { - "@id": "https://bioregistry.io/registry/radlex" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/registry/co_320" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/registry/vario" + "@value": "disease" }, { - "@id": "https://bioregistry.io/registry/aro" + "@value": "health science" }, { - "@id": "https://bioregistry.io/registry/metabolights" + "@value": "taxonomy" }, { - "@id": "https://bioregistry.io/registry/gorel" + "@value": "epidemiology" }, { - "@id": "https://bioregistry.io/registry/inchikey" - }, + "@value": "global health" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://icd.who.int/browse10" + }, + "https://bioregistry.io/schema/#0000005": "C34", + "https://bioregistry.io/schema/#0000006": "https://icd.who.int/browse10/2019/en#/$1", + "https://bioregistry.io/schema/#0000008": "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N6d5b847b9ebd4556a5a9c1fcc34574ae" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@id": "https://bioregistry.io/registry/oma.grp" + "@value": "ICD" }, { - "@id": "https://bioregistry.io/registry/metanetx.compartment" + "@value": "ICD10WHO" }, { - "@id": "https://bioregistry.io/registry/spp" + "@value": "ICD-10" }, { - "@id": "https://bioregistry.io/registry/emsl.project" - }, + "@value": "ICD10" + } + ], + "https://bioregistry.io/schema/#0000024": "https://icd.who.int/browse10/2019/en#/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://icd.who.int/browse10/2019/en#/C34" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "icd10" + } + }, + { + "@id": "_:N6d5b847b9ebd4556a5a9c1fcc34574ae", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "World Health Organization" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "info@who.int" + } + }, + { + "@id": "http://aber-owl.net/ontology/CVDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/disprot.region", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://bioregistry.io/registry/virgen" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@id": "https://bioregistry.io/registry/gtex" + "@id": "https://bioregistry.io/registry/disprot" } ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bioregistry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://bioregistry.io" + "@value": "DisProt region" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "chebi" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/disprot.region" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://bioregistry.io/registry/$1" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.disprot.org" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "https://bioregistry.io/$1:$2" + "https://bioregistry.io/schema/#0000005": "DP00086r013", + "https://bioregistry.io/schema/#0000006": "https://www.disprot.org/$1", + "https://bioregistry.io/schema/#0000008": "^DP\\d{5}r\\d{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.disprot.org/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.disprot.org/DP00086r013" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-4423-4370" - } - }, - { - "@id": "http://www.ontobee.org/ontology/CEPH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "https://bioregistry.io/schema/#0000029": { + "@value": "disprot.region" } }, { - "@id": "https://bioregistry.io/registry/ato", + "@id": "https://bioregistry.io/registry/wbbt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource", + "http://purl.org/dc/terms/description": "Ontology about the gross anatomy of the C. elegans", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Amphibian taxonomy" + "@value": "C. elegans Gross Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/ATO" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/WBbt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ATO" + "@id": "https://www.obofoundry.org/ontology/wbbt" }, { - "@id": "https://fairsharing.org/FAIRsharing.ayjdsm" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt" }, { - "@id": "https://www.obofoundry.org/ontology/ato" + "@id": "http://aber-owl.net/ontology/WBBT" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ATO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "taxonomy" + "@id": "http://www.ontobee.org/ontology/WBbt" }, { - "@value": "obo" + "@id": "https://fairsharing.org/FAIRsharing.phk7dd" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.amphibanat.org" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ATO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/ATO/2/ato.obo" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1810-9886" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ATO_", - "https://bioregistry.io/schema/#0000029": { - "@value": "ato" - } - }, - { - "@id": "https://bioregistry.io/registry/cpc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cooperative Patent Classification" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CPC" + "@id": "https://bioregistry.io/metaregistry/go/resolve/WBbt" }, { - "@id": "https://registry.identifiers.org/registry/cpc" + "@id": "https://bioregistry.io/metaregistry/biocontext/WBbt" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cpc" + "@id": "https://bioportal.bioontology.org/ontologies/WB-BT" }, { - "@id": "https://fairsharing.org/FAIRsharing.e08886" + "@id": "https://registry.bio2kg.org/resource/wbbt" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "earth science" - }, - { - "@value": "atmospheric science" + "@value": "life science" }, { - "@value": "hydrogeology" + "@value": "anatomy" }, { - "@value": "meteorology" + "@value": "obo" }, { - "@value": "geography" + "@value": "worm" }, { - "@value": "geodesy" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://worldwide.espacenet.com/classification" + "@id": "https://github.com/obophenotype/c-elegans-gross-anatomy-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0001290", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/WBbt_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/wbbt.owl" }, - "https://bioregistry.io/schema/#0000005": "A01M1/026", - "https://bioregistry.io/schema/#0000006": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1", - "https://bioregistry.io/schema/#0000008": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8151-7479" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "WBbt" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/WBbt_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=A01M1/026" + "@id": "http://purl.obolibrary.org/obo/WBbt_0001290" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cpc" + "@value": "wbbt" } }, { - "@id": "https://registry.identifiers.org/registry/funcbase.human", + "@id": "https://registry.identifiers.org/registry/omit", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0001-9370-918X", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Daniel Sonenshine" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dsonensh@odu.edu" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "http://edamontology.org/data_2638", + "@id": "https://registry.bio2kg.org/resource/pigqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/zenodo.record", + "@id": "https://bioregistry.io/registry/kegg.brite", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + { + "@id": "https://bioregistry.io/registry/kegg" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zenodo" + "@value": "KEGG BRITE" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.wy4egf" - }, - { - "@id": "http://www.wikidata.org/entity/P4901" + "@id": "https://registry.bio2kg.org/resource/kegg.brite" }, { - "@id": "https://www.re3data.org/repository/r3d100010468" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.BRITE" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "subject agnostic" + "@value": "pathway" }, { - "@value": "data management" + "@value": "classification" + }, + { + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://zenodo.org" + "@id": "http://www.genome.jp/kegg/brite.html" }, - "https://bioregistry.io/schema/#0000005": "4390079", - "https://bioregistry.io/schema/#0000006": "https://zenodo.org/record/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "ko00071", + "https://bioregistry.io/schema/#0000006": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8135-3489" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "zenodo" - }, - "https://bioregistry.io/schema/#0000024": "https://zenodo.org/record/", + "https://bioregistry.io/schema/#0000024": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br", "https://bioregistry.io/schema/#0000027": { - "@id": "https://zenodo.org/record/4390079" + "@id": "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+brko00071" }, "https://bioregistry.io/schema/#0000029": { - "@value": "zenodo.record" + "@value": "kegg.brite" } }, { - "@id": "https://bioregistry.io/registry/dragondb.allele", + "@id": "https://bioregistry.io/registry/degradome", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/dragondb" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DragonDB Allele" + "@value": "Degradome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.ALLELE" + "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.allele" + "@id": "https://registry.identifiers.org/registry/degradome" }, { - "@id": "https://registry.identifiers.org/registry/dragondb.allele" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.antirrhinum.net/" + "@id": "http://degradome.uniovi.es/" }, - "https://bioregistry.io/schema/#0000005": "cho", - "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.allele:", + "https://bioregistry.io/schema/#0000005": "Ax1", + "https://bioregistry.io/schema/#0000006": "http://degradome.uniovi.es/cgi-bin/protease/$1", + "https://bioregistry.io/schema/#0000008": "^[AMCST][0-9x][0-9]$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://degradome.uniovi.es/cgi-bin/protease/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=cho&class=Allele" + "@id": "http://degradome.uniovi.es/cgi-bin/protease/Ax1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dragondb.allele" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHARPROT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "degradome" } }, { - "@id": "http://aber-owl.net/ontology/PW", + "@id": "https://bioregistry.io/registry/ons", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NXR" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/FlyBase" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/DGGR" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SAMN" - }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology for Nutritional Studies" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_APB" + "@id": "http://aber-owl.net/ontology/ONS" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BDSC" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RGD" + "@id": "https://fairsharing.org/FAIRsharing.rfec93" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_TAC" + "@id": "https://bioportal.bioontology.org/ontologies/ONS" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM" + "@id": "http://www.ontobee.org/ontology/ONS" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/BCBC" + "@id": "http://agroportal.lirmm.fr/ontologies/ONS" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/VDRC" - }, + "@id": "https://www.obofoundry.org/ontology/ons" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_JAX" + "@value": "nutritional science" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_RBRC" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AB" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/Addgene" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/enpadasi/Ontology-for-Nutritional-Studies" + }, + "https://bioregistry.io/schema/#0000005": "0000060", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ONS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ons.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/RRRC" + "@id": "https://bioregistry.io/registry/foodon" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/WB-STRAIN:WBStrain" + "@id": "https://bioregistry.io/registry/envo" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/CVCL" + "@id": "https://bioregistry.io/registry/ro" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/SCR" + "@id": "https://bioregistry.io/registry/chebi" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC" + "@id": "https://bioregistry.io/registry/obi" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC" + "@id": "https://bioregistry.io/registry/bfo" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MGI" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/MMRRC" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Research Resource Identifiers" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://rrid.site" + "@id": "https://bioregistry.io/registry/ncbitaxon" + } + ], + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/one" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "AB" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9125-4337" }, - "https://bioregistry.io/schema/#0000007": { - "@value": "https://scicrunch.org/resolver/RRID:$1_$2" + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ONS_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ONS_0000060" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5497-0243" + "https://bioregistry.io/schema/#0000029": { + "@value": "ons" } }, { - "@id": "https://bioregistry.io/schema/#0000029", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "has canonical prefix" + "@id": "https://orcid.org/0000-0002-6195-6976", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tudor Oprea" }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "toprea@salud.unm.edu" + } + }, + { + "@id": "https://orcid.org/0000-0003-1705-3515", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Andreas Ruepp" }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "andreas.ruepp@helmholtz-muenchen.de" + } + }, + { + "@id": "https://bartoc.org/en/node/430", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mirex", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/nuclearbd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/sugarbind", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://cropontology.org/ontology/CO_334", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cropoct" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/macie", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://orcid.org/0000-0002-0682-3089", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has prefix" + "@value": "David Sehnal" }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "david.sehnal@gmail.com" + } + }, + { + "@id": "https://registry.identifiers.org/registry/occ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.identifiers.org/registry/cath", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/schem", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Selventa legacy chemical namespace used with the Biological Expression Language", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ - { - "@id": "http://identifiers.org/idot/preferredPrefix" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Selventa Chemicals" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://vocabularies.bridgedb.org/ops#systemCode" + "@value": "selventa" }, { - "@id": "http://purl.org/vocab/vann/preferredNamespacePrefix" + "@value": "bel" }, { - "@id": "http://www.w3.org/ns/shacl#prefix" + "@value": "chemistry" } - ] + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/OpenBEL/resource-generator/blob/master/datasets/selventa-legacy-chemical-names.txt" + }, + "https://bioregistry.io/schema/#0000005": "A0001", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/schem/$1", + "https://bioregistry.io/schema/#0000008": "^A\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/schem/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biopragmatics.github.io/providers/schem/A0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "schem" + } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextdb", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pina", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/FBBT", + "@id": "https://bioportal.bioontology.org/ontologies/XAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/homd.taxon", + "@id": "https://www.obofoundry.org/ontology/ohmi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://orcid.org/0000-0002-2390-6572", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Maxwell L. Neal" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "maxneal@gmail.com" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/mmsl", + "@id": "https://bioregistry.io/registry/vuid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included.", + "http://purl.org/dc/terms/description": "The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Multum MediSource Lexicon" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.175" + "@value": "Veterans Health Administration (VHA) unique identifier" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/rxnorm/sourcereleasedocs/mmsl.html" + "@id": "https://www.va.gov/health" }, - "https://bioregistry.io/schema/#0000005": "3355", + "https://bioregistry.io/schema/#0000005": "4007166", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MMSL_CODE" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "mmsl" + "@value": "vuid" } }, { - "@id": "https://bioregistry.io/registry/xml", + "@id": "http://www.ontobee.org/ontology/OHPI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/registry/span", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.", + "http://purl.org/dc/terms/description": "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Extensible Markup Language" + "@value": "Span" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/xml" + "@value": "ontology" }, { - "@id": "https://fairsharing.org/FAIRsharing.b5cc91" + "@value": "upper-level ontology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.w3.org/TR/xml/" + "@id": "http://ontology.buffalo.edu/smith/articles/SNAP_SPAN.pdf" }, - "https://bioregistry.io/schema/#0000005": "lang", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/XML/1998/namespace#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/XML/1998/namespace#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/XML/1998/namespace#lang" - }, "https://bioregistry.io/schema/#0000029": { - "@value": "xml" + "@value": "span" } }, { - "@id": "https://bioregistry.io/metaregistry/cheminf", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "Contains entries for various database identifiers" + "@id": "https://bioregistry.io/schema/#0000011", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://semanticscience.org/resource/CHEMINF_000140" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000411" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000446" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000405" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000566" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000407" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000141" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000567" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000563" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000569" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000565" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000412" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000406" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000564" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000304" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000447" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000408" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000409" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000302" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Information Ontology" + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://github.com/semanticchemistry/semanticchemistry" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "provides for" }, - "https://bioregistry.io/schema/#0000005": { - "@value": "000140" + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000001" + } + }, + { + "@id": "https://orcid.org/0000-0002-5705-5710", + "http://purl.org/dc/terms/contributor": { + "@id": "https://bioregistry.io/registry/gear" }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://semanticscience.org/resource/CHEMINF_$1" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Joshua Orvis" }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7542-0286" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "jorvis@gmail.com" } }, { - "@id": "http://www.ontobee.org/ontology/SPD", + "@id": "http://aber-owl.net/ontology/CHIRO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/registry/degradome", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vmhgene", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.smallmolecule", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/ATOL", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/hprd", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/proglyc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced.", + "http://purl.org/dc/terms/description": "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Degradome Database" + "@value": "ProGlycProt" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/degradome" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROGLYC" }, { - "@id": "https://registry.identifiers.org/registry/degradome" + "@id": "https://registry.identifiers.org/registry/proglyc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DEGRADOME" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/proglyc" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://degradome.uniovi.es/" + "@id": "http://www.proglycprot.org/" }, - "https://bioregistry.io/schema/#0000005": "Ax1", - "https://bioregistry.io/schema/#0000006": "http://degradome.uniovi.es/cgi-bin/protease/$1", - "https://bioregistry.io/schema/#0000008": "^[AMCST][0-9x][0-9]$", + "https://bioregistry.io/schema/#0000005": "AC119", + "https://bioregistry.io/schema/#0000006": "http://www.proglycprot.org/detail.aspx?ProId=$1", + "https://bioregistry.io/schema/#0000008": "^[A-Z]C\\d{1,3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://degradome.uniovi.es/cgi-bin/protease/", + "https://bioregistry.io/schema/#0000024": "http://www.proglycprot.org/detail.aspx?ProId=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://degradome.uniovi.es/cgi-bin/protease/Ax1" + "@id": "http://www.proglycprot.org/detail.aspx?ProId=AC119" }, "https://bioregistry.io/schema/#0000029": { - "@value": "degradome" + "@value": "proglyc" } }, { - "@id": "https://registry.identifiers.org/registry/ps", + "@id": "http://agroportal.lirmm.fr/ontologies/CO_337", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://aber-owl.net/ontology/STATO", + "@id": "https://bioregistry.io/metaregistry/biocontext/MS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.q053vb", + "@id": "https://www.re3data.org/repository/r3d100010931", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.drug", + "@id": "https://bioregistry.io/metaregistry/biocontext/RICENETDB.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/gnd", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SIGNALING-GATEWAY", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ricenetdb.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.kj336a", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/erm", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/goa", + "@id": "http://aber-owl.net/ontology/AEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/opm", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENECARDS", + "@id": "https://bioregistry.io/metaregistry/go/resolve/gomodel", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGN", + "@id": "https://registry.identifiers.org/registry/uniprot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://edamontology.org/data_2613", + "@id": "https://registry.identifiers.org/registry/chembl.target", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN", + "@id": "https://bioregistry.io/metaregistry/biocontext/EFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/grsdb", + "@id": "https://bioregistry.io/registry/lincs.protein", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "LINCS Protein" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/biocontext/LINCS.PROTEIN" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/lincs.protein" + }, + { + "@id": "https://registry.identifiers.org/registry/lincs.protein" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://lincs.hms.harvard.edu/db/proteins/" + }, + "https://bioregistry.io/schema/#0000005": "200282", + "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/proteins/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/proteins/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://lincs.hms.harvard.edu/db/proteins/200282" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "lincs.protein" } }, { - "@id": "https://www.re3data.org/repository/r3d100011564", + "@id": "https://fairsharing.org/FAIRsharing.63m4ss", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://edamontology.org/data_2314", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012863", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgn", + "@id": "http://edamontology.org/data_2644", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT", + "@id": "https://registry.identifiers.org/registry/hcvdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/foodon", + "@id": "https://registry.bio2kg.org/resource/microsporidia", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://www.ontobee.org/ontology/RNAO", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orphanet.ordo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/corrdb", + "@id": "https://bioregistry.io/registry/ctcae", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies.", + "http://purl.org/dc/terms/description": "The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CorrDB" + "@value": "Common Terminology Criteria for Adverse Events" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.IziuCK" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011496" - }, - { - "@id": "https://registry.identifiers.org/registry/corrdb" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "animal genetics" - }, - { - "@value": "systems biology" - }, - { - "@value": "life science" + "@id": "http://aber-owl.net/ontology/CTCAE" }, { - "@value": "genetics" + "@id": "https://bioportal.bioontology.org/ontologies/CTCAE" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.animalgenome.org" + "@id": "https://evs.nci.nih.gov/ftp1/CTCAE/About.html" + }, + "https://bioregistry.io/schema/#0000005": "E12768", + "https://bioregistry.io/schema/#0000008": "^E\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/CTCAE/2/ctcae.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/oae" }, - "https://bioregistry.io/schema/#0000005": "37232", - "https://bioregistry.io/schema/#0000006": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1", - "https://bioregistry.io/schema/#0000008": "^[0-9]+$", - "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6704-7538" + "@id": "_:N7c9c314d0f544ed4a266982796905960" }, - "https://bioregistry.io/schema/#0000024": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:37232" + "https://bioregistry.io/schema/#0000023": { + "@value": "CTCAE" }, "https://bioregistry.io/schema/#0000029": { - "@value": "corrdb" + "@value": "ctcae" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/OGMS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "_:N7c9c314d0f544ed4a266982796905960", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CTCAE Help" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "ncictcaehelp@mail.nih.gov" } }, { - "@id": "https://registry.identifiers.org/registry/emdb", + "@id": "https://www.obofoundry.org/ontology/ohd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.re3data.org/repository/r3d100000023", + "@id": "https://orcid.org/0000-0001-6215-3617", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tim Robertson" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "timrobertson100@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DECIPHER", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/foodb.compound", + "@id": "https://fairsharing.org/FAIRsharing.8d6247", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/foaf", + "@id": "https://bioportal.bioontology.org/ontologies/MIAPA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://edamontology.org/data_3856", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/NSRRC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "http://aber-owl.net/ontology/APO", + "@id": "http://aber-owl.net/ontology/OPMI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/CDNO", + "@id": "http://agroportal.lirmm.fr/ontologies/CDAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.651n9j", + "@id": "https://bioregistry.io/registry/loqate", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "The localization and quantitation atlas of the yeast proteome" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/loqate" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.weizmann.ac.il/molgen/loqate/" + }, + "https://bioregistry.io/schema/#0000005": "1001", + "https://bioregistry.io/schema/#0000006": "http://www.weizmann.ac.il/molgen/loqate/gene/view/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.weizmann.ac.il/molgen/loqate/gene/view/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.weizmann.ac.il/molgen/loqate/gene/view/1001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "loqate" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID", + "@id": "https://registry.identifiers.org/registry/funcbase.fly", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.obofoundry.org/ontology/uo", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/PerkinElmer", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction", + "@id": "https://registry.identifiers.org/registry/bao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/medgen", + "@id": "https://bartoc.org/en/node/216", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bartoc" + } + }, + { + "@id": "http://www.ontobee.org/ontology/AMPHX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://aber-owl.net/ontology/REPRODUCE-ME", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/roleo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.", + "http://purl.org/dc/terms/description": "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Medical Genetics" + "@value": "Role Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MedGen" + "@id": "https://bioportal.bioontology.org/ontologies/ROLEO" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/medgen" + "@id": "http://aber-owl.net/ontology/ROLEO" }, { - "@id": "https://registry.identifiers.org/registry/medgen" - }, + "@id": "https://registry.bio2kg.org/resource/roleo" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MedGen" + "@value": "ontology" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medgen" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/medgen/" + "@id": "http://sourceforge.net/projects/roleo" }, - "https://bioregistry.io/schema/#0000005": "760050", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/medgen/$1", - "https://bioregistry.io/schema/#0000008": "^[CN]*\\d{4,7}$", + "https://bioregistry.io/schema/#0000005": "0000002", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RoleO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/ROLEO/1/roleo.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-9189-9661" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RoleO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/RoleO_0000002" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "roleo" + } + }, + { + "@id": "https://bioregistry.io/registry/cell_biolabs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Cell Biolabs cell line products" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.cellbiolabs.com" + }, + "https://bioregistry.io/schema/#0000005": "AKR-270", + "https://bioregistry.io/schema/#0000006": "https://www.cellbiolabs.com/search?keywords=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/medgen/", + "https://bioregistry.io/schema/#0000024": "https://www.cellbiolabs.com/search?keywords=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/medgen/760050" + "@id": "https://www.cellbiolabs.com/search?keywords=AKR-270" }, "https://bioregistry.io/schema/#0000029": { - "@value": "medgen" + "@value": "cell_biolabs" } }, { - "@id": "http://aber-owl.net/ontology/VANDF", + "@id": "https://bioregistry.io/registry/cordis.article", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CORDIS Article" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://cordis.europa.eu/" + }, + "https://bioregistry.io/schema/#0000005": "436605", + "https://bioregistry.io/schema/#0000006": "https://cordis.europa.eu/article/id/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://cordis.europa.eu/article/id/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://cordis.europa.eu/article/id/436605" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "cordis.article" } }, { - "@id": "https://bioregistry.io/metaregistry/ols", - "@type": "https://bioregistry.io/schema/#0000002", - "http://purl.org/dc/elements/1.1/description": { - "@value": "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " + "@id": "https://bioregistry.io/metaregistry/biocontext/ATO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PSIMOD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/registry/fbcv", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO.", + "http://purl.org/dc/terms/hasPart": { + "@id": "https://bioregistry.io/registry/dpo" }, - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mro" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_358" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ordo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chiro" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/skos" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_365" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/duo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_336" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbt" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ido" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbphenotype" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/labo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ppo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/proco" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ornaseq" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bco" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/prov" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dicom" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/olatdv" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bfo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_348" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chmo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pato" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_343" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ceph" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/shareloc" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pso" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddanat" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cl" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/schemaorg_http" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gsso" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hancestro" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/psdo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bto" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gaz" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfa" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mp" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omit" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mco" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eco" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vbo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xlmod" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dpo" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rxno" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/agro" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vt" - }, + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp" + "@id": "https://bioregistry.io/registry/flybase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_366" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/FlyBase/flybase-controlled-vocabulary" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FlyBase Controlled Vocabulary" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado" + "@id": "https://registry.bio2kg.org/resource/fbcv" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv" + "@id": "http://aber-owl.net/ontology/FBCV" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omrse" + "@id": "https://bioportal.bioontology.org/ontologies/FB-CV" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/txpo" + "@id": "https://bioregistry.io/metaregistry/biocontext/FBcv" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdno" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mi" + "@id": "https://www.obofoundry.org/ontology/fbcv" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam" + "@id": "https://fairsharing.org/FAIRsharing.6tgyxf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bspo" - }, + "@id": "http://www.ontobee.org/ontology/FBcv" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila" + "@value": "ontology" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rexo" + "@value": "life science" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbbi" + "@value": "descriptor" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf" + "@value": "obo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohpi" - }, + "@value": "fly" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://purl.obolibrary.org/obo/fbcv" + }, + "https://bioregistry.io/schema/#0000005": "0000586", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/FBcv_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/fbcv.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/ontoavida" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1373-1705" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "FBcv" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/FBcv_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/FBcv_0000586" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fbcv" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/vo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/GALEN", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/licebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://registry.identifiers.org/registry/4dn", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/pseudogene", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PseudoGene" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emapa" + "@id": "https://bioportal.bioontology.org/ontologies/pseudo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cao" - }, + "@id": "https://registry.bio2kg.org/resource/pseudogene" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/go" + "@value": "ontology" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohmi" - }, + "@value": "gene" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.pseudogene.org" + }, + "https://bioregistry.io/schema/#0000005": "PGOHUM00000289843", + "https://bioregistry.io/schema/#0000006": "http://tables.pseudogene.org/[?species_name]/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9746-371" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "pseudogene.org" + }, + "https://bioregistry.io/schema/#0000024": "http://tables.pseudogene.org/[?species_name]/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://tables.pseudogene.org/[?species_name]/PGOHUM00000289843" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pseudogene" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/treebase", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://registry.identifiers.org/registry/vipr", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/oboformat", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biolink" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.bxc508", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ONE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biomodels.db", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/NDFRT", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/cohd", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/MIT-LCP/mimic-omop" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "MIMIC III Database" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/enm" + "@value": "clinical data" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao" + "@value": "clinical trials" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_337" + "@value": "health" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmo" - }, + "@value": "health sciences" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/MIT-LCP/mimic-omop" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000029": { + "@value": "cohd" + } + }, + { + "@id": "https://orcid.org/0000-0002-2406-1145", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "David Clunie" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dclunie@dclunie.com" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.LIGM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EPD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "https://registry.identifiers.org/registry/trichdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.9kahy4", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P818", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/FLOPO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://orcid.org/0000-0003-4423-4370", + "http://purl.org/dc/terms/contributor": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mod" + "@id": "https://bioregistry.io/registry/ndfrt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apo" + "@id": "https://bioregistry.io/registry/nsf.award" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_325" + "@id": "https://bioregistry.io/registry/cgnc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pcl" + "@id": "https://bioregistry.io/registry/uniprot.journal" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tads" + "@id": "https://bioregistry.io/registry/biro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/maxo" + "@id": "https://bioregistry.io/registry/xmetdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs" + "@id": "https://bioregistry.io/registry/vsmo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi" + "@id": "https://bioregistry.io/registry/inaturalist.user" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dron" + "@id": "https://bioregistry.io/registry/adms" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbls" + "@id": "https://bioregistry.io/registry/mesh.vocab" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ddpheno" + "@id": "https://bioregistry.io/registry/emolecules" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/caro" + "@id": "https://bioregistry.io/registry/skos" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fma" + "@id": "https://bioregistry.io/registry/dmba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hpath" + "@id": "https://bioregistry.io/registry/lbctr" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/planp" + "@id": "https://bioregistry.io/registry/hdl" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cdao" + "@id": "https://bioregistry.io/registry/omim.ps" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/spd" + "@id": "https://bioregistry.io/registry/gorel" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oostt" + "@id": "https://bioregistry.io/registry/mirte" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_322" + "@id": "https://bioregistry.io/registry/langual" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbcv" + "@id": "https://bioregistry.io/registry/kegg.dgroup" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto" + "@id": "https://bioregistry.io/registry/ubprop" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eol" + "@id": "https://bioregistry.io/registry/prov" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/teddy" + "@id": "https://bioregistry.io/registry/fcsfree" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ero" + "@id": "https://bioregistry.io/registry/edam.operation" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/scdo" + "@id": "https://bioregistry.io/registry/frbrer" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mf" + "@id": "https://bioregistry.io/registry/cnrs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoneo" + "@id": "https://bioregistry.io/registry/empiar" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao" + "@id": "https://bioregistry.io/registry/pesticides" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf" + "@id": "https://bioregistry.io/registry/chictr" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fypo" + "@id": "https://bioregistry.io/registry/confident.series" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro" + "@id": "https://bioregistry.io/registry/ucas" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mop" + "@id": "https://bioregistry.io/registry/github.pull" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_356" + "@id": "https://bioregistry.io/registry/cba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao" + "@id": "https://bioregistry.io/registry/receptome.family" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_324" + "@id": "https://bioregistry.io/registry/hcpcs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cio" + "@id": "https://bioregistry.io/registry/ndex" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo" + "@id": "https://bioregistry.io/registry/inn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_333" + "@id": "https://bioregistry.io/registry/uminctr" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi" + "@id": "https://bioregistry.io/registry/icd10pcs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd" + "@id": "https://bioregistry.io/registry/cog" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cheminf" + "@id": "https://bioregistry.io/registry/sdis" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upheno" + "@id": "https://bioregistry.io/registry/hl7.v2codesystem" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo" + "@id": "https://bioregistry.io/registry/wikipathways.vocab" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv" + "@id": "https://bioregistry.io/registry/linkml" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt" + "@id": "https://bioregistry.io/registry/google.scholar" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pco" + "@id": "https://bioregistry.io/registry/cito" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem" + "@id": "https://bioregistry.io/registry/flybrain.ndb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iceo" + "@id": "https://bioregistry.io/registry/ucsc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg" + "@id": "https://bioregistry.io/registry/commoncoreontology" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gexo" + "@id": "https://bioregistry.io/registry/bioschemas" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride" + "@id": "https://bioregistry.io/registry/bams" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cro" + "@id": "https://bioregistry.io/registry/inhand" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/uberon" + "@id": "https://bioregistry.io/registry/scop.sccs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/covoc" + "@id": "https://bioregistry.io/registry/eolife" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_320" + "@id": "https://bioregistry.io/registry/worldavatar.compchem" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ovae" + "@id": "https://bioregistry.io/registry/ucum" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_340" + "@id": "https://bioregistry.io/registry/pubchem.classification" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo" + "@id": "https://bioregistry.io/registry/biolegend" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clo" + "@id": "https://bioregistry.io/registry/pubchem.cell" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miapa" + "@id": "https://bioregistry.io/registry/peff" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_330" + "@id": "https://bioregistry.io/registry/mba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/peco" + "@id": "https://bioregistry.io/registry/hba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo" + "@id": "https://bioregistry.io/registry/codelink" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbsp" + "@id": "https://bioregistry.io/registry/matrixdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/taxrank" + "@id": "https://bioregistry.io/registry/evm" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto" + "@id": "https://bioregistry.io/registry/lter" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncit" + "@id": "https://bioregistry.io/registry/abcd" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aism" + "@id": "https://bioregistry.io/registry/ximbio" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clyh" + "@id": "https://bioregistry.io/registry/mmsl" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfoem" + "@id": "https://bioregistry.io/registry/pharmacodb.tissue" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth" + "@id": "https://bioregistry.io/registry/edam.format" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo" + "@id": "https://bioregistry.io/registry/icf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vario" + "@id": "https://bioregistry.io/registry/fairsharing.organization" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341" + "@id": "https://bioregistry.io/registry/oncotree" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio" + "@id": "https://bioregistry.io/registry/foodb.food" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cco" + "@id": "https://bioregistry.io/registry/sael" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa" + "@id": "https://bioregistry.io/registry/cog.category" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt" + "@id": "https://bioregistry.io/registry/snap" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/one" + "@id": "https://bioregistry.io/registry/bartoc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp" + "@id": "https://bioregistry.io/registry/sh" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_357" + "@id": "https://bioregistry.io/registry/doco" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/owl" + "@id": "https://bioregistry.io/registry/rfc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2" + "@id": "https://bioregistry.io/registry/github.issue" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reproduceme" + "@id": "https://bioregistry.io/registry/bioregistry" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nomen" + "@id": "https://bioregistry.io/registry/span" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/foodon" + "@id": "https://bioregistry.io/registry/bcrc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/so" + "@id": "https://bioregistry.io/registry/nkos" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno" + "@id": "https://bioregistry.io/registry/icldb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/iao" + "@id": "https://bioregistry.io/registry/ecolexicon" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo" + "@id": "https://bioregistry.io/registry/dcterms" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oarcs" + "@id": "https://bioregistry.io/registry/asrp" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_339" + "@id": "https://bioregistry.io/registry/inaturalist.place" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vto" + "@id": "https://bioregistry.io/registry/fivestars" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/slm" + "@id": "https://bioregistry.io/registry/decipher" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_350" + "@id": "https://bioregistry.io/registry/dhba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ontoavida" + "@id": "https://bioregistry.io/registry/foaf" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xl" + "@id": "https://bioregistry.io/registry/eaglei" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/eupath" + "@id": "https://bioregistry.io/registry/skip" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/phipo" + "@id": "https://bioregistry.io/registry/repec" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_327" + "@id": "https://bioregistry.io/registry/agrovoc" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cob" + "@id": "https://bioregistry.io/registry/ecmdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/snomed" + "@id": "https://bioregistry.io/registry/ymdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zeco" + "@id": "https://bioregistry.io/registry/cellopub" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ico" + "@id": "https://bioregistry.io/registry/dsm4" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hsapdv" + "@id": "https://bioregistry.io/registry/oban" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/flopo" + "@id": "https://bioregistry.io/registry/ddinter.interaction" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdro" + "@id": "https://bioregistry.io/registry/bactibase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/doid" + "@id": "https://bioregistry.io/registry/pseudogene" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno" + "@id": "https://bioregistry.io/registry/lonza" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno" + "@id": "https://bioregistry.io/registry/rxnorm" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/to" + "@id": "https://bioregistry.io/registry/owlstar" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/unimod" + "@id": "https://bioregistry.io/registry/thermofisher" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hao" + "@id": "https://bioregistry.io/registry/graingenes.reference" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rbo" + "@id": "https://bioregistry.io/registry/fbql" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_347" + "@id": "https://bioregistry.io/registry/ppdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hom" + "@id": "https://bioregistry.io/registry/jcrb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro" + "@id": "https://bioregistry.io/registry/stn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogi" + "@id": "https://bioregistry.io/registry/alzforum.mutation" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hp" + "@id": "https://bioregistry.io/registry/faldo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao" + "@id": "https://bioregistry.io/registry/pba" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idomal" + "@id": "https://bioregistry.io/registry/gramene.reference" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geo" + "@id": "https://bioregistry.io/registry/nlx.dys" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecocore" + "@id": "https://bioregistry.io/registry/kupo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/trans" + "@id": "https://bioregistry.io/registry/nextprot.family" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo" + "@id": "https://bioregistry.io/registry/pharmacodb.cell" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obib" + "@id": "https://bioregistry.io/registry/sigmaaldrich" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio" + "@id": "https://bioregistry.io/registry/cdt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19" + "@id": "https://bioregistry.io/registry/dsmz" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecto" + "@id": "https://bioregistry.io/registry/cog.pathway" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/kisao" + "@id": "https://bioregistry.io/registry/ontie" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fbdv" + "@id": "https://bioregistry.io/registry/goldbook" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lepao" + "@id": "https://bioregistry.io/registry/brenda.ligand" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/afo" + "@id": "https://bioregistry.io/registry/isrctn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opl" + "@id": "https://bioregistry.io/registry/unirule" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vido" + "@id": "https://bioregistry.io/registry/hms.lincs.antibody" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fix" + "@id": "https://bioregistry.io/registry/echinobase" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pw" + "@id": "https://bioregistry.io/registry/idpo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro" + "@id": "https://bioregistry.io/registry/ccle" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_346" + "@id": "https://bioregistry.io/registry/sty" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/om" + "@id": "https://bioregistry.io/registry/novus" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_345" + "@id": "https://bioregistry.io/registry/scop" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro" + "@id": "https://bioregistry.io/registry/scomp" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro" + "@id": "https://bioregistry.io/registry/icd11" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncbitaxon" + "@id": "https://bioregistry.io/registry/emmo.cif" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ohd" + "@id": "https://bioregistry.io/registry/drugbank.metabolite" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo" + "@id": "https://bioregistry.io/registry/enzo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gecko" + "@id": "https://bioregistry.io/registry/cosmic.cell" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rdfs" + "@id": "https://bioregistry.io/registry/fairsharing.user" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao" + "@id": "https://bioregistry.io/registry/icd9cm" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oboinowl" + "@id": "https://bioregistry.io/registry/lncipedia" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo" + "@id": "https://bioregistry.io/registry/go.gpi" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sdgio" + "@id": "https://bioregistry.io/registry/ctis" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_335" + "@id": "https://bioregistry.io/registry/hc.trial" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fao" + "@id": "https://bioregistry.io/registry/xsd" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/plana" + "@id": "https://bioregistry.io/registry/pharmacodb.dataset" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mondo" + "@id": "https://bioregistry.io/registry/fhir.implementation" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo" + "@id": "https://bioregistry.io/registry/kclb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_323" + "@id": "https://bioregistry.io/registry/hsdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334" + "@id": "https://bioregistry.io/registry/bioregistry.collection" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_331" + "@id": "https://bioregistry.io/registry/mediadive.solution" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/atol" + "@id": "https://bioregistry.io/registry/publons.researcher" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mamo" + "@id": "https://bioregistry.io/registry/vann" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ms" + "@id": "https://bioregistry.io/registry/caloha" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio" + "@id": "https://bioregistry.io/registry/abcam" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cvdo" + "@id": "https://bioregistry.io/registry/hc.npn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/amphx" + "@id": "https://bioregistry.io/registry/phenx" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/srao" + "@id": "https://bioregistry.io/registry/jax" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/msio" + "@id": "https://bioregistry.io/registry/goeco" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv" + "@id": "https://bioregistry.io/registry/dsm5" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hso" + "@id": "https://bioregistry.io/registry/qudt" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/poro" + "@id": "https://bioregistry.io/registry/ncats.drug" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis" + "@id": "https://bioregistry.io/registry/storedb.file" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sibo" + "@id": "https://bioregistry.io/registry/dbvar.study" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/clao" + "@id": "https://bioregistry.io/registry/chembl.cell" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rs" + "@id": "https://bioregistry.io/registry/credit" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae" + "@id": "https://bioregistry.io/registry/ncbi.resource" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap" + "@id": "https://bioregistry.io/registry/namerxn" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rex" + "@id": "https://bioregistry.io/registry/bridgedb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ino" + "@id": "https://bioregistry.io/registry/prefixcommons" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cto" + "@id": "https://bioregistry.io/registry/swrl" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ons" + "@id": "https://bioregistry.io/registry/dbo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ma" + "@id": "https://bioregistry.io/registry/nucc.characteristic" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/lbo" + "@id": "https://bioregistry.io/registry/glygen" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs" + "@id": "https://bioregistry.io/registry/gard" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/opmi" + "@id": "https://bioregistry.io/registry/hms.lincs.compound" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dideo" + "@id": "https://bioregistry.io/registry/smiles" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcio" + "@id": "https://bioregistry.io/registry/dbvar.variant" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cido" + "@id": "https://bioregistry.io/registry/drugcentral" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ngbo" + "@id": "https://bioregistry.io/registry/pictar" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/disdriv" + "@id": "https://bioregistry.io/registry/goche" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fideo" + "@id": "https://bioregistry.io/registry/vac" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogms" + "@id": "https://bioregistry.io/registry/vuid" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/omo" + "@id": "https://bioregistry.io/registry/bs" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/hcao" + "@id": "https://bioregistry.io/registry/datacite" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/po" + "@id": "https://bioregistry.io/registry/kcris" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/colao" + "@id": "https://bioregistry.io/registry/violinnet" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_359" + "@id": "https://bioregistry.io/registry/iro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tgma" + "@id": "https://bioregistry.io/registry/scop.sid" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pr" + "@id": "https://bioregistry.io/registry/diseasesdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_360" + "@id": "https://bioregistry.io/registry/debio" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/dcterms" + "@id": "https://bioregistry.io/registry/biogrid.interaction" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sepio" + "@id": "https://bioregistry.io/registry/easychair.topic" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oba" + "@id": "https://bioregistry.io/registry/umls.aui" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology Lookup Service" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@value": "https://www.ebi.ac.uk/ols4" - }, - "https://bioregistry.io/schema/#0000005": { - "@value": "chebi" - }, - "https://bioregistry.io/schema/#0000006": { - "@value": "https://www.ebi.ac.uk/ols4/ontologies/$1" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7251-9504" - } - }, - { - "@id": "https://bioregistry.io/registry/ontie", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/IEDB/ONTIE" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for Immune Epitopes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.kx2md1" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "immunology" + "@id": "https://bioregistry.io/registry/multicellds" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/go.resource" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ontology.iedb.org/" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "https://ontology.iedb.org/ontology/ONTIE_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/IEDB/ONTIE/master/ontie.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8457-6693" - }, - "https://bioregistry.io/schema/#0000024": "https://ontology.iedb.org/ontology/ONTIE_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://ontology.iedb.org/ontology/ONTIE_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ontie" - } - }, - { - "@id": "http://edamontology.org/data_2644", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/bdgp.est", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Berkeley Drosophila Genome Project EST database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/BDGP_EST" + "@id": "https://bioregistry.io/registry/t4fs" }, { - "@id": "https://registry.bio2kg.org/resource/flybase.est" + "@id": "https://bioregistry.io/registry/reaxys" }, { - "@id": "https://registry.identifiers.org/registry/bdgp.est" + "@id": "https://bioregistry.io/registry/frapo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est" + "@id": "https://bioregistry.io/registry/lpt" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BDGP.EST" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/dbEST/index.html" - }, - "https://bioregistry.io/schema/#0000005": "EY223054.1", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nucest/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?(\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/dbest" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nucest/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nucest/EY223054.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bdgp.est" - } - }, - { - "@id": "https://orcid.org/0000-0002-6379-8932", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Laurel Cooper" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "cooperl@oregonstate.edu" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-6421-1080", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Narcis Fernandez-Fuentes" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "narcis.fernandez@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/gno", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for glycans based on GlyTouCan, but organized by subsumption.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/glygen-glycan-data/GNOme" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Glycan Naming and Subsumption Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.ontobee.org/ontology/GNO" + "@id": "https://bioregistry.io/registry/uniprot.resource" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/gno" + "@id": "https://bioregistry.io/registry/rdfs" }, { - "@id": "https://www.obofoundry.org/ontology/gno" + "@id": "https://bioregistry.io/registry/qb" }, { - "@id": "http://aber-owl.net/ontology/GNO" + "@id": "https://bioregistry.io/registry/hoelzel" }, { - "@id": "https://bioportal.bioontology.org/ontologies/GNO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/registry/biozil" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://gnome.glyomics.org/" - }, - "https://bioregistry.io/schema/#0000005": "10004892", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GNO_$1", - "https://bioregistry.io/schema/#0000008": "^(\\d{8}|(\\w+\\d+\\w+))$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/gno.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5168-3196" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "gnome" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GNO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GNO_10004892" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "gno" - } - }, - { - "@id": "http://www.ontobee.org/ontology/OlatDv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dg.6vts", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/mmusdv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Life cycle stages for Mus Musculus", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Mouse Developmental Stages" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.obofoundry.org/ontology/mmusdv" + "@id": "https://bioregistry.io/registry/pathbank" }, { - "@id": "http://aber-owl.net/ontology/MMUSDV" + "@id": "https://bioregistry.io/registry/te" }, { - "@id": "https://fairsharing.org/FAIRsharing.zchb68" + "@id": "https://bioregistry.io/registry/gc" }, { - "@id": "http://www.ontobee.org/ontology/MmusDv" + "@id": "https://bioregistry.io/registry/ctri" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMUSDV" + "@id": "https://bioregistry.io/registry/icepo" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mmusdv" + "@id": "https://bioregistry.io/registry/dolce" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MmusDv" + "@id": "https://bioregistry.io/registry/ppr" }, { - "@id": "https://bioportal.bioontology.org/ontologies/MMUSDV" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "anatomy" + "@id": "https://bioregistry.io/registry/ecg" }, { - "@value": "developmental biology" + "@id": "https://bioregistry.io/registry/cvx" }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/fr" }, { - "@value": "embryology" + "@id": "https://bioregistry.io/registry/ghr" }, { - "@value": "ontology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/developmental-stage-ontologies/wiki/MmusDv" - }, - "https://bioregistry.io/schema/#0000005": "0000066", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MmusDv_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/mmusdv.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9415-5104" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "MmusDv" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MmusDv_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/MmusDv_0000066" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmusdv" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/alzforum.mutation", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alzforum Mutations" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "variants" + "@id": "https://bioregistry.io/registry/rtecs" }, { - "@value": "genes" + "@id": "https://bioregistry.io/registry/icd10cm" }, { - "@value": "alzheimer's disease" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.alzforum.org/mutations" - }, - "https://bioregistry.io/schema/#0000005": "app-d678n-tottori", - "https://bioregistry.io/schema/#0000006": "https://www.alzforum.org/mutations/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "Alzforum_mut" - }, - "https://bioregistry.io/schema/#0000024": "https://www.alzforum.org/mutations/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.alzforum.org/mutations/app-d678n-tottori" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "alzforum.mutation" - } - }, - { - "@id": "https://bioregistry.io/registry/d1id", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DataONE" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/d1id" + "@id": "https://bioregistry.io/registry/bioregistry.registry" }, { - "@id": "https://registry.identifiers.org/registry/d1id" + "@id": "https://bioregistry.io/registry/ac" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.dataone.org" - }, - "https://bioregistry.io/schema/#0000005": "00030692-0FE1-4A1B-955E-A2E55D659267", - "https://bioregistry.io/schema/#0000006": "https://cn.dataone.org/cn/v2/resolve/{$1}", - "https://bioregistry.io/schema/#0000008": "^\\S+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/d1id:", - "https://bioregistry.io/schema/#0000029": { - "@value": "d1id" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.62evqh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ONE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/pdumdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0017", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5rb3fk", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0003-0169-8159", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Núria Queralt Rosinach" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "n.queralt_rosinach@lumc.nl" - } - }, - { - "@id": "https://bioregistry.io/registry/phylomedb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhylomeDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/geonames.feature" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB" + "@id": "https://bioregistry.io/registry/vsdb" }, { - "@id": "https://registry.identifiers.org/registry/phylomedb" + "@id": "https://bioregistry.io/registry/brenda.ligandgroup" }, { - "@id": "https://www.uniprot.org/database/DB-0144" + "@id": "https://bioregistry.io/registry/gsfa" }, { - "@id": "https://registry.bio2kg.org/resource/phylomedb" + "@id": "https://bioregistry.io/registry/pactr" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb" + "@id": "https://bioregistry.io/registry/tgn" }, { - "@id": "https://fairsharing.org/FAIRsharing.7hxxc4" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/edam.topic" + }, { - "@value": "genome" + "@id": "https://bioregistry.io/registry/rpcec" }, { - "@value": "taxonomy" + "@id": "https://bioregistry.io/registry/birnlex" }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/go.rule" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/gmelin" }, { - "@value": "phylogenomics" + "@id": "https://bioregistry.io/registry/snornabase" }, { - "@value": "phylogenetics" + "@id": "https://bioregistry.io/registry/drugbank.salt" }, { - "@value": "phylogeny" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://phylomedb.org/" - }, - "https://bioregistry.io/schema/#0000005": "Phy000CLXM_RAT", - "https://bioregistry.io/schema/#0000006": "http://phylomedb.org/?seqid=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://phylomedb.org/?seqid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://phylomedb.org/?seqid=Phy000CLXM_RAT" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "phylomedb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/minid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://orcid.org/0000-0002-4532-2703", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Petra Fey" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pfey@northwestern.edu" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/bioportal", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/pba", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A controlled vocabulary to support the study of transcription in the primate brain", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Primate Brain Atlas" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.blueprintnhpatlas.org/" - }, - "https://bioregistry.io/schema/#0000005": "128011350", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/pba/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/obophenotype/uberon/master/source-ontologies/allen-pba.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/pba/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/pba/128011350" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pba" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/taxon", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/rnao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/glycomapsdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A database of GlycoMaps containing 2585 conformational maps.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GlycoMapsDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/glycomapsdb" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "small molecule" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.glycosciences.de/modeling/glycomapsdb/" - }, - "https://bioregistry.io/schema/#0000005": "6819", - "https://bioregistry.io/schema/#0000006": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=6819" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "glycomapsdb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5a4y1y", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/jcrb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "JRBC Cell Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/JCRB" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cellbank.nibiohn.go.jp" - }, - "https://bioregistry.io/schema/#0000005": "JCRB1355", - "https://bioregistry.io/schema/#0000006": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1", - "https://bioregistry.io/schema/#0000008": "^JCRB\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=JCRB1355" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "jcrb" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.SUBSTRATEDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/upa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/bigg.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BiGG Reaction" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/hms.lincs.dataset" + }, { - "@id": "https://registry.identifiers.org/registry/bigg.reaction" + "@id": "https://bioregistry.io/registry/eurofir" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.reaction" + "@id": "https://bioregistry.io/registry/unpd" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bigg.ucsd.edu/universal/reactions" - }, - "https://bioregistry.io/schema/#0000005": "13GS", - "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/universal/reactions/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/universal/reactions/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bigg.ucsd.edu/models/universal/reactions/13GS" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bigg.reaction" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4229", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CTCAE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/cdd", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Conserved Domain Database at NCBI" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/iceberg.cime" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CDD" + "@id": "https://bioregistry.io/registry/hl7.v3codesystem" }, { - "@id": "https://registry.identifiers.org/registry/cdd" + "@id": "https://bioregistry.io/registry/snctp" }, { - "@id": "https://www.uniprot.org/database/DB-0214" + "@id": "https://bioregistry.io/registry/omop" }, { - "@id": "http://edamontology.org/data_2666" + "@id": "https://bioregistry.io/registry/bido" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CDD" + "@id": "https://bioregistry.io/registry/mediadive.ingredient" }, { - "@id": "https://registry.bio2kg.org/resource/cdd" + "@id": "https://bioregistry.io/registry/uniprot.disease" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cdd" + "@id": "https://bioregistry.io/registry/hathitrust" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/CDD" + "@id": "https://bioregistry.io/registry/bpdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.ea287c" + "@id": "https://bioregistry.io/registry/msigdb" }, { - "@id": "https://www.re3data.org/repository/r3d100012041" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ietf.language" + }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/puro" }, { - "@value": "geology" + "@id": "https://bioregistry.io/registry/diseaseclass" }, { - "@value": "earth science" + "@id": "https://bioregistry.io/registry/ftt" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/sites/entrez?db=cdd" - }, - "https://bioregistry.io/schema/#0000005": "cd00400", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1", - "https://bioregistry.io/schema/#0000008": "^(cd)?\\d{5}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00400" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cdd" - } - }, - { - "@id": "http://aber-owl.net/ontology/TAXRANK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/ideal", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Intrinsically Disordered proteins with Extensive Annotations and Literature" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/inaturalist.taxon" + }, { - "@id": "https://registry.identifiers.org/registry/ideal" + "@id": "https://bioregistry.io/registry/dctypes" }, { - "@id": "https://fairsharing.org/FAIRsharing.h3y42f" + "@id": "https://bioregistry.io/registry/schem" }, { - "@id": "https://www.uniprot.org/database/DB-0251" + "@id": "https://bioregistry.io/registry/iso15926" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ideal" + "@id": "https://bioregistry.io/registry/loinc" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IDEAL" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "biology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ideal-db.org" - }, - "https://bioregistry.io/schema/#0000005": "IID00001", - "https://bioregistry.io/schema/#0000006": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^IID\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=IID00001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ideal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.e4n3an", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://www.ontobee.org/ontology/NCRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/nlm", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Library of Medicine Catalog" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/radlex" + }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/NLMID" + "@id": "https://bioregistry.io/registry/epcc" }, { - "@id": "https://bartoc.org/en/node/528" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/nlmcatalog" - }, - "https://bioregistry.io/schema/#0000005": "101775319", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/nlmcatalog/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/nlmcatalog/101775319" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlm" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/worfdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/cazy", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/biogrid.interaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/mirbase.family" + }, { - "@id": "https://bioregistry.io/registry/biogrid" + "@id": "https://bioregistry.io/registry/rebec" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioGRID Interactions" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://edamontology.org/data_2628" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://thebiogrid.org/" - }, - "https://bioregistry.io/schema/#0000005": "2649230", - "https://bioregistry.io/schema/#0000006": "https://thebiogrid.org/interaction/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-9713-9994" - }, - "https://bioregistry.io/schema/#0000024": "https://thebiogrid.org/interaction/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://thebiogrid.org/interaction/2649230" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "biogrid.interaction" - } - }, - { - "@id": "https://bioregistry.io/collection/0000008", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/grassbase" + }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/confident.event" }, { - "@id": "https://bioregistry.io/registry/oboinowl" + "@id": "https://bioregistry.io/registry/hesa" }, { - "@id": "https://bioregistry.io/registry/hp" + "@id": "https://bioregistry.io/registry/lspci" }, { - "@id": "https://bioregistry.io/registry/doid" + "@id": "https://bioregistry.io/registry/uniprot.var" }, { - "@id": "https://bioregistry.io/registry/pmc" + "@id": "https://bioregistry.io/registry/ecn" }, { - "@id": "https://bioregistry.io/registry/rdfs" + "@id": "https://bioregistry.io/registry/storedb.dataset" }, { - "@id": "https://bioregistry.io/registry/bfo" + "@id": "https://bioregistry.io/registry/npass" }, { - "@id": "https://bioregistry.io/registry/dso" + "@id": "https://bioregistry.io/registry/dermo" }, { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://bioregistry.io/registry/nddf" }, { - "@id": "https://bioregistry.io/registry/trans" + "@id": "https://bioregistry.io/registry/idog" }, { - "@id": "https://bioregistry.io/registry/symp" + "@id": "https://bioregistry.io/registry/seo" }, { - "@id": "https://bioregistry.io/registry/doi" + "@id": "https://bioregistry.io/registry/phrr" }, { - "@id": "https://bioregistry.io/registry/pubmed" + "@id": "https://bioregistry.io/registry/cohd" }, { - "@id": "https://bioregistry.io/registry/vo" + "@id": "https://bioregistry.io/registry/ctcae" }, { - "@id": "https://bioregistry.io/registry/owl" + "@id": "https://bioregistry.io/registry/wikidata.property" }, { - "@id": "https://bioregistry.io/registry/ovae" + "@id": "https://bioregistry.io/registry/fabio" }, { - "@id": "https://bioregistry.io/registry/oae" + "@id": "https://bioregistry.io/registry/webelements" }, { - "@id": "https://bioregistry.io/registry/ido" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ASKEM Epidemiology Prefixes" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMEX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OBAN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" - } - }, - { - "@id": "https://registry.identifiers.org/registry/imgt.ligm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0002-2993-2085", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Richard Boyce" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "rdb20@pitt.edu" - } - }, - { - "@id": "https://bioregistry.io/registry/google.book", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Search the world's most comprehensive index of full-text books.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Google Books" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "http://www.wikidata.org/entity/P675" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://books.google.com" - }, - "https://bioregistry.io/schema/#0000005": "qafeQTWIWmcC", - "https://bioregistry.io/schema/#0000006": "https://books.google.com/books?id=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://books.google.com/books?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://books.google.com/books?id=qafeQTWIWmcC" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "google.book" - } - }, - { - "@id": "http://www.wikidata.org/entity/P593", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/qudt", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/qudt/qudt-public-repo" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Quantities, Units, Dimensions, and Types Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/gtr" + }, { - "@id": "http://aber-owl.net/ontology/QUDT" + "@id": "https://bioregistry.io/registry/ncbi.genome" }, { - "@id": "https://bartoc.org/en/node/18206" + "@id": "https://bioregistry.io/registry/imdrf" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/qud" + "@id": "https://bioregistry.io/registry/biorxiv" }, { - "@id": "https://bioportal.bioontology.org/ontologies/QUDT" + "@id": "https://bioregistry.io/registry/rnamod" }, { - "@id": "https://fairsharing.org/FAIRsharing.d3pqw7" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/oa" + }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/easychair.cfp" }, { - "@value": "astrophysics and astronomy" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://qudt.org" - }, - "https://bioregistry.io/schema/#0000005": "baseDimensionEnumeration", - "https://bioregistry.io/schema/#0000006": "http://qudt.org/schema/qudt#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/QUDT/4/qudt.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://qudt.org/schema/qudt#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://qudt.org/schema/qudt#baseDimensionEnumeration" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "qudt" - } - }, - { - "@id": "http://aber-owl.net/ontology/ZFA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/iclc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Interlab Cell Line Collection" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLC" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.iclc.it" - }, - "https://bioregistry.io/schema/#0000005": "ATL98012", - "https://bioregistry.io/schema/#0000006": "http://www.iclc.it/details/det_list.php?line_id=$1", - "https://bioregistry.io/schema/#0000008": "^\\w{3}\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.iclc.it/details/det_list.php?line_id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.iclc.it/details/det_list.php?line_id=ATL98012" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iclc" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/orth", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/chebi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/glycomapsdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "http://edamontology.org/data_2104", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tarbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/olatdv", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://registry.identifiers.org/registry/irefweb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ird.segment", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/icd10pcs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 10th Revision, Procedure Coding System" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/gfo" + }, { - "@id": "http://aber-owl.net/ontology/ICD10PCS" + "@id": "https://bioregistry.io/registry/rdo" }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.4" + "@id": "https://bioregistry.io/registry/cao" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ICD10PCS" + "@id": "https://bioregistry.io/registry/depmap" }, { - "@id": "https://fairsharing.org/FAIRsharing.85k1jm" + "@id": "https://bioregistry.io/registry/vega" }, { - "@id": "http://www.wikidata.org/entity/P1690" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/th" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/jrct" }, { - "@value": "health science" + "@id": "https://bioregistry.io/registry/cellosaurus.resource" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/dcat" }, { - "@value": "epidemiology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nlm.nih.gov/research/umls/sourcereleasedocs/current/ICD10PCS" - }, - "https://bioregistry.io/schema/#0000005": "01N50ZZ", - "https://bioregistry.io/schema/#0000006": "https://www.findacode.com/code.php?set=ICD10PCS&c=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nb7cba4c2ffc54d749f40667db69bc6d1" - }, - "https://bioregistry.io/schema/#0000024": "https://www.findacode.com/code.php?set=ICD10PCS&c=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.findacode.com/code.php?set=ICD10PCS&c=01N50ZZ" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "icd10pcs" - } - }, - { - "@id": "_:Nb7cba4c2ffc54d749f40667db69bc6d1", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pat Brooks" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "patricia.brooks2@cms.hhs.gov" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CORUM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.4c7f91", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.9rhr9j", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.pbbnwa", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/MFMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://orcid.org/0000-0002-1572-1316", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Robert Druzinsky" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "druzinsk@uic.edu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ideal", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/probonto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/sprint", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/aeo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.283", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.7sfedh", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/bactibase", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bactibase" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/npo" + }, { - "@id": "https://registry.bio2kg.org/resource/bactibase" + "@id": "https://bioregistry.io/registry/drugbank.category" }, { - "@id": "https://www.re3data.org/repository/r3d100012755" + "@id": "https://bioregistry.io/registry/scholia.resource" }, { - "@id": "https://fairsharing.org/FAIRsharing.5f5mfm" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/semapv" + }, { - "@value": "protein" + "@id": "https://bioregistry.io/registry/tkg" }, { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bactibase.hammamilab.org" - }, - "https://bioregistry.io/schema/#0000005": "BAC045", - "https://bioregistry.io/schema/#0000006": "http://bactibase.hammamilab.org/$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bactibase.hammamilab.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bactibase.hammamilab.org/BAC045" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bactibase" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.48e326", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_337", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "http://www.wikidata.org/entity/P4616", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://bioregistry.io/registry/bigg.metabolite", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BiGG Metabolite" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/pubchem.element" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.METABOLITE" + "@id": "https://bioregistry.io/registry/c4o" }, { - "@id": "https://registry.identifiers.org/registry/bigg.metabolite" + "@id": "https://bioregistry.io/registry/illumina.probe" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.metabolite" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bigg.ucsd.edu/universal/metabolites" - }, - "https://bioregistry.io/schema/#0000005": "12dgr161", - "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/universal/metabolites/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/universal/metabolites/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bigg.ucsd.edu/models/universal/metabolites/12dgr161" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bigg.metabolite" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/complexportal", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "http://www.ontobee.org/ontology/GENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://registry.identifiers.org/registry/corrdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011294", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://orcid.org/0000-0002-5316-1399", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sebastian Koehler" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "dr.sebastian.koehler@gmail.com" - } - }, - { - "@id": "https://bioregistry.io/registry/xco", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Experimental condition ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/nlm" + }, { - "@id": "http://www.ontobee.org/ontology/XCO" + "@id": "https://bioregistry.io/registry/tfclass" + }, + { + "@id": "https://bioregistry.io/registry/scoro" + }, + { + "@id": "https://bioregistry.io/registry/gemet" + }, + { + "@id": "https://bioregistry.io/registry/icd9" + }, + { + "@id": "https://bioregistry.io/registry/venom" + }, + { + "@id": "https://bioregistry.io/registry/salk" + }, + { + "@id": "https://bioregistry.io/registry/gnomad" + }, + { + "@id": "https://bioregistry.io/registry/emea" + }, + { + "@id": "https://bioregistry.io/registry/geonames" + }, + { + "@id": "https://bioregistry.io/registry/probesanddrugs" + }, + { + "@id": "https://bioregistry.io/registry/edam.data" + }, + { + "@id": "https://bioregistry.io/registry/cmecs" + }, + { + "@id": "https://bioregistry.io/registry/rcb" + }, + { + "@id": "https://bioregistry.io/registry/conso" + }, + { + "@id": "https://bioregistry.io/registry/pwo" + }, + { + "@id": "https://bioregistry.io/registry/itis" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xco" + "@id": "https://bioregistry.io/registry/fyler" }, { - "@id": "https://bioportal.bioontology.org/ontologies/XCO" + "@id": "https://bioregistry.io/registry/miaa" }, { - "@id": "https://www.obofoundry.org/ontology/xco" + "@id": "https://bioregistry.io/registry/merops.clan" }, { - "@id": "https://registry.bio2kg.org/resource/xco" + "@id": "https://bioregistry.io/registry/shex" }, { - "@id": "http://aber-owl.net/ontology/XCO" + "@id": "https://bioregistry.io/registry/nlx.anat" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/XCO" + "@id": "https://bioregistry.io/registry/void" }, { - "@id": "https://fairsharing.org/FAIRsharing.x39h5y" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" + "@id": "https://bioregistry.io/registry/uniprot.ptm" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/ecacc" }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/chemrof" }, { - "@value": "life science" + "@id": "https://bioregistry.io/registry/drks" }, { - "@value": "measurement" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000" - }, - "https://bioregistry.io/schema/#0000005": "0000780", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/XCO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/xco.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ + "@id": "https://bioregistry.io/registry/cordis.article" + }, { - "@id": "https://bioregistry.io/registry/agro" + "@id": "https://bioregistry.io/registry/ncbigi" }, { - "@id": "https://bioregistry.io/registry/ecto" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-6443-9376" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/XCO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/XCO_0000780" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "xco" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MPID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mp0rwf", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.61", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://registry.identifiers.org/registry/dandi", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/splash", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://edamontology.org/data_2346", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://orcid.org/0000-0001-9117-7909", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Christian-Alexander Dudek" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "c.dudek@tu-braunschweig.de" - } - }, - { - "@id": "http://edamontology.org/data_1153", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://aber-owl.net/ontology/ROLEO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop.events", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/protonet.proteincard", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/co_370", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Apple (Malus domestica) defines crop traits and variables to support the standardisation of apple breeding databases providing description of agronomic, morphological, physiological, quality traits, its methods and scales.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/bioversity/Crop-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Apple Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/eol" + }, { - "@id": "http://agroportal.lirmm.fr/ontologies/CO_370" + "@id": "https://bioregistry.io/registry/sfam" }, { - "@id": "https://cropontology.org/ontology/CO_370" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cropontology.org/term/CO_370:ROOT" - }, - "https://bioregistry.io/schema/#0000005": "0000890", - "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_370:$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8981-0442" - }, - "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_370:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cropontology.org/rdf/CO_370:0000890" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "co_370" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kaggle", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.metagenome", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/registry/kclb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line collections (Providers)", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Korean Cell Line Bank" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/KCLB" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cellbank.snu.ac.kr/english" - }, - "https://bioregistry.io/schema/#0000005": "10020.2", - "https://bioregistry.io/schema/#0000006": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=10020.2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "kclb" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/ecso", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/DataONEorg/sem-prov-ontologies" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Ecosystem Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/frbr" + }, { - "@id": "http://aber-owl.net/ontology/ECSO" + "@id": "https://bioregistry.io/registry/nfdi4chem.osmo" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ECSO" + "@id": "https://bioregistry.io/registry/datacommons" }, { - "@id": "https://fairsharing.org/FAIRsharing.a4ww64" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/icdo" + }, { - "@value": "ecosystem science" + "@id": "https://bioregistry.io/registry/time" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/fungorum" }, { - "@value": "earth science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioportal.bioontology.org/ontologies/ECSO" - }, - "https://bioregistry.io/schema/#0000005": "00000532", - "https://bioregistry.io/schema/#0000006": "http://purl.dataone.org/odo/ECSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/DataONEorg/sem-prov-ontologies/run4/observation/d1-ECSO.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.dataone.org/odo/ECSO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.dataone.org/odo/ECSO_00000532" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ecso" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cteno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/registry/nlx.func", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXFUNC covers terms for cognitive function.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/tctr" + }, { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://bioregistry.io/registry/molbase.sheffield" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Cognitive Function" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "neuroscience" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "https://bioregistry.io/schema/#0000005": "90801", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_func_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXFUNC" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_func_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_func_90801" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.func" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HGNC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mzspec", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/oboInOwl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010978", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012535", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/SGD", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ja9cdq", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.59", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "http://www.ontobee.org/ontology/CMF", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/PSO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012344", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "http://www.wikidata.org/entity/P8117", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010931", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_347", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "http://edamontology.org/data_2666", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.209", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/RHEA", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.knp11s", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/isbn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "http://aber-owl.net/ontology/MS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOVERGEN", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/OPM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/collection/0000009", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" - }, - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/lcsh" + }, { - "@id": "https://bioregistry.io/registry/iso.3166" + "@id": "https://bioregistry.io/registry/nfdi4chem.ontocape" }, { - "@id": "https://bioregistry.io/registry/hc.npn" + "@id": "https://bioregistry.io/registry/skosxl" }, { - "@id": "https://bioregistry.io/registry/icf" + "@id": "https://bioregistry.io/registry/fbrf" }, { - "@id": "https://bioregistry.io/registry/pubmed" + "@id": "https://bioregistry.io/registry/irct" }, { - "@id": "https://bioregistry.io/registry/clinvar" + "@id": "https://bioregistry.io/registry/bel" }, { - "@id": "https://bioregistry.io/registry/ensembl" + "@id": "https://bioregistry.io/registry/beiresources" }, { - "@id": "https://bioregistry.io/registry/so" + "@id": "https://bioregistry.io/registry/seinet" }, { - "@id": "https://bioregistry.io/registry/hl7.v3codesystem" + "@id": "https://bioregistry.io/registry/oboinowl" }, { - "@id": "https://bioregistry.io/registry/dbsnp" + "@id": "https://bioregistry.io/registry/worldavatar.kin" }, { - "@id": "https://bioregistry.io/registry/cvx" + "@id": "https://bioregistry.io/registry/hms.lincs.cell" }, { - "@id": "https://bioregistry.io/registry/pharmgkb.gene" + "@id": "https://bioregistry.io/registry/owl" }, { - "@id": "https://bioregistry.io/registry/omim" + "@id": "https://bioregistry.io/registry/ukprn" }, { - "@id": "https://bioregistry.io/registry/rxnorm" + "@id": "https://bioregistry.io/registry/drugbank.reaction" }, { - "@id": "https://bioregistry.io/registry/dsm5" + "@id": "https://bioregistry.io/registry/vandf" }, { - "@id": "https://bioregistry.io/registry/hc.din" + "@id": "https://bioregistry.io/registry/slctr" }, { - "@id": "https://bioregistry.io/registry/clinicaltrials" + "@id": "https://bioregistry.io/registry/dto" }, { - "@id": "https://bioregistry.io/registry/unii" + "@id": "https://bioregistry.io/registry/conference" }, { - "@id": "https://bioregistry.io/registry/cosmic" + "@id": "https://bioregistry.io/registry/odrl" }, { - "@id": "https://bioregistry.io/registry/snomedct" + "@id": "https://bioregistry.io/registry/clingene" }, { - "@id": "https://bioregistry.io/registry/icd10" + "@id": "https://bioregistry.io/registry/sweetrealm" }, { - "@id": "https://bioregistry.io/registry/ncit" + "@id": "https://bioregistry.io/registry/cp" }, { - "@id": "https://bioregistry.io/registry/loinc" + "@id": "https://bioregistry.io/registry/idoden" }, { - "@id": "https://bioregistry.io/registry/hgnc" + "@id": "https://bioregistry.io/registry/gainesville.core" }, { - "@id": "https://bioregistry.io/registry/imgt.hla" + "@id": "https://bioregistry.io/registry/smid" }, { - "@id": "https://bioregistry.io/registry/hl7.v2codesystem" + "@id": "https://bioregistry.io/registry/graingenes.symbol" }, { - "@id": "https://bioregistry.io/registry/ietf.language" + "@id": "https://bioregistry.io/registry/storedb.study" }, { - "@id": "https://bioregistry.io/registry/icd9" + "@id": "https://bioregistry.io/registry/scr" }, { - "@id": "https://bioregistry.io/registry/ndc" + "@id": "https://bioregistry.io/registry/fishbase.species" }, { - "@id": "https://bioregistry.io/registry/radlex" + "@id": "https://bioregistry.io/registry/rdf" }, { - "@id": "https://bioregistry.io/registry/ucum" + "@id": "https://bioregistry.io/registry/iceberg.ime" }, { - "@id": "https://bioregistry.io/registry/refseq" + "@id": "https://bioregistry.io/registry/come" }, { - "@id": "https://bioregistry.io/registry/nucc.taxonomy" + "@id": "https://bioregistry.io/registry/drugbank.condition" }, { - "@id": "https://bioregistry.io/registry/dicom" + "@id": "https://bioregistry.io/registry/xml" }, { - "@id": "https://bioregistry.io/registry/lrg" + "@id": "https://bioregistry.io/registry/n2t" }, { - "@id": "https://bioregistry.io/registry/ndfrt" + "@id": "https://bioregistry.io/registry/wgs84" }, { - "@id": "https://bioregistry.io/registry/atcc" + "@id": "https://bioregistry.io/registry/citexplore" }, { - "@id": "https://bioregistry.io/registry/cpt" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "FHIR External Terminologies" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/propreo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/4dxpress", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100010197", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/micro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/pictar", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PicTar" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pictar.mdc-berlin.de/" - }, - "https://bioregistry.io/schema/#0000005": "hsa-let-7a", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000023": { - "@value": "pictar-vert" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pictar" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013478", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioregistry.io/registry/pharmgkb.pathways", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmGKB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/kegg.rclass" + }, { - "@id": "http://www.wikidata.org/entity/P7001" + "@id": "https://bioregistry.io/registry/oslc" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways" + "@id": "https://bioregistry.io/registry/doap" }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.pathways" + "@id": "https://bioregistry.io/registry/xuo" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHARMGKB.PATHWAYS" + "@id": "https://bioregistry.io/registry/ccrid" }, { - "@id": "https://registry.bio2kg.org/resource/pharmgkb.pathways" + "@id": "https://bioregistry.io/registry/dso" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PHARMGKB.PATHWAYS" + "@id": "https://bioregistry.io/registry/schema" }, { - "@id": "http://edamontology.org/data_2650" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/genbank" + }, { - "@value": "pharmacogenomics" + "@id": "https://bioregistry.io/registry/dc" }, { - "@value": "pathway" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.pharmgkb.org/" - }, - "https://bioregistry.io/schema/#0000005": "PA146123006", - "https://bioregistry.io/schema/#0000006": "http://www.pharmgkb.org/pathway/$1", - "https://bioregistry.io/schema/#0000008": "^PA\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pharmgkb.org/pathway/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pharmgkb.org/pathway/PA146123006" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmgkb.pathways" - } - }, - { - "@id": "https://orcid.org/0000-0001-5628-4194", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Brodbelt" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "DBrodbelt@RVC.AC.UK" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.y3scf6", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/xco", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.tissue", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/hc.din" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/registry/nsc" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Tissue List" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/syoid" + }, { - "@id": "https://registry.identifiers.org/registry/tissuelist" + "@id": "https://bioregistry.io/registry/itmctr" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TISSUELIST" + "@id": "https://bioregistry.io/registry/scopus" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tissuelist" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/docs/tisslist.txt" - }, - "https://bioregistry.io/schema/#0000005": "TS-0285", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/tissues/$1", - "https://bioregistry.io/schema/#0000008": "^TS-\\d{4}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/tissues/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/tissues/TS-0285" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.tissue" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CDAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/geonames.feature", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GeoNames Feature Code" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.geonames.org/export/codes.html" - }, - "https://bioregistry.io/schema/#0000005": "ADM1", - "https://bioregistry.io/schema/#0000006": "https://www.geonames.org/recent-changes/featurecode/$1/", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/geonames.feature:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.geonames.org/recent-changes/featurecode/ADM1/" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "geonames.feature" - } - }, - { - "@id": "http://www.ontobee.org/ontology/UPHENO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/merops", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/fbtc" + }, { - "@id": "https://bioregistry.io/registry/merops.clan" + "@id": "https://bioregistry.io/registry/nrfc" }, { - "@id": "https://bioregistry.io/registry/merops.family" - } - ] - }, - { - "@id": "https://registry.identifiers.org/registry/biomodels.kisao", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/mmo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://bioregistry.io/registry/pmap.cutdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites).", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "CutDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/ssbd.project" + }, { - "@id": "https://registry.identifiers.org/registry/pmap.cutdb" + "@id": "https://bioregistry.io/registry/kestrelo" }, { - "@id": "https://registry.bio2kg.org/resource/pmap.cutdb" + "@id": "https://bioregistry.io/registry/uniprot.location" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pmap.cutdb" + "@id": "https://bioregistry.io/registry/iso.3166" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PMAP.CUTDB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ihw" + }, { - "@value": "pathway" + "@id": "https://bioregistry.io/registry/pfr" }, { - "@value": "enzyme" + "@id": "https://bioregistry.io/registry/neuronames" }, { - "@value": "protein" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cutdb.burnham.org" - }, - "https://bioregistry.io/schema/#0000005": "25782", - "https://bioregistry.io/schema/#0000006": "http://cutdb.burnham.org/relation/show/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cutdb.burnham.org/relation/show/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cutdb.burnham.org/relation/show/25782" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pmap.cutdb" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.vq28qp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/wikipathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/resid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/ecyano", - "http://purl.org/dc/terms/hasPart": [ + "@id": "https://bioregistry.io/registry/gbif" + }, { - "@id": "https://bioregistry.io/registry/ecyano.entity" + "@id": "https://bioregistry.io/registry/bmrb.restraint" }, { - "@id": "https://bioregistry.io/registry/ecyano.experiment" + "@id": "https://bioregistry.io/registry/bioregistry.schema" }, { - "@id": "https://bioregistry.io/registry/ecyano.rule" - } - ] - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.module", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/APO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/chemidplus", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "ChemIDplus" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/reo" + }, { - "@id": "https://registry.identifiers.org/registry/chemidplus" + "@id": "https://bioregistry.io/registry/pfam.clan" }, { - "@id": "http://edamontology.org/data_2658" + "@id": "https://bioregistry.io/registry/4dn.replicate" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chemidplus" + "@id": "https://bioregistry.io/registry/google.book" }, { - "@id": "https://registry.bio2kg.org/resource/chemidplus" + "@id": "https://bioregistry.io/registry/panorama" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMIDPLUS" + "@id": "https://bioregistry.io/registry/siren" }, { - "@id": "https://fairsharing.org/FAIRsharing.5949vn" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/mgnify.analysis" + }, { - "@value": "biomedical science" + "@id": "https://bioregistry.io/registry/nist" }, { - "@value": "structure" + "@id": "https://bioregistry.io/registry/ssbd.dataset" }, { - "@value": "molecules" + "@id": "https://bioregistry.io/registry/nucc.taxonomy" }, { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://chem.nlm.nih.gov/chemidplus/chemidheavy.jsp" - }, - "https://bioregistry.io/schema/#0000005": "57-27-2", - "https://bioregistry.io/schema/#0000006": "https://chem.nlm.nih.gov/chemidplus/rn/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+\\-\\d+\\-\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ChemIDplus" - }, - "https://bioregistry.io/schema/#0000024": "https://chem.nlm.nih.gov/chemidplus/rn/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://chem.nlm.nih.gov/chemidplus/rn/57-27-2" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "chemidplus" - } - }, - { - "@id": "https://bioregistry.io/registry/edam.operation", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://bioregistry.io/registry/deo" + }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/registry/bibo" }, { - "@id": "https://bioregistry.io/registry/edam" - } - ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/edamontology/edamontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Operation" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://edamontology.org" - }, - "https://bioregistry.io/schema/#0000005": "0004", - "https://bioregistry.io/schema/#0000006": "http://edamontology.org/operation_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/edamontology/edamontology/raw/main/releases/EDAM.obo" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" - }, - "https://bioregistry.io/schema/#0000024": "http://edamontology.org/operation_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://edamontology.org/operation_0004" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "edam.operation" - } - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/SO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" - } - }, - { - "@id": "https://bioregistry.io/registry/arxiv", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "arXiv" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/emmo" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/arxiv" + "@id": "https://bioregistry.io/registry/ncbibook" }, { - "@id": "https://registry.identifiers.org/registry/arxiv" + "@id": "https://bioregistry.io/registry/hog" }, { - "@id": "https://bartoc.org/en/node/20434" + "@id": "https://bioregistry.io/registry/nihhesc" }, { - "@id": "http://www.wikidata.org/entity/P818" + "@id": "https://bioregistry.io/registry/pspub" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ARXIV" + "@id": "https://bioregistry.io/registry/anzctr" }, { - "@id": "https://registry.bio2kg.org/resource/arxiv" + "@id": "https://bioregistry.io/registry/agilent.probe" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "bibliography" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://arxiv.org/" - }, - "https://bioregistry.io/schema/#0000005": "0807.4956v1", - "https://bioregistry.io/schema/#0000006": "https://arxiv.org/abs/$1", - "https://bioregistry.io/schema/#0000008": "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://arxiv.org/abs/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://arxiv.org/abs/0807.4956v1" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Charles Tapley Hoyt" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "arxiv" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "cthoyt@gmail.com" } }, { - "@id": "https://fairsharing.org/FAIRsharing.aae3v6", + "@id": "https://registry.bio2kg.org/resource/snomedct", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FIDEO", + "@id": "https://registry.identifiers.org/registry/hogenom", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHICKENQTLDB", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/kegg.environ", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/TTO", + "@id": "https://fairsharing.org/FAIRsharing.7fc5y6", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IntAct", + "@id": "http://aber-owl.net/ontology/TTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://www.re3data.org/repository/r3d100012725", + "@id": "https://bioregistry.io/metaregistry/biocontext/CHEMBL.TARGET", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MIRIAM.RESOURCE", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocyc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.8b6wfq", + "@id": "https://fairsharing.org/FAIRsharing.IziuCK", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/iuphar.receptor", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ttd.target", + "@id": "https://bioregistry.io/metaregistry/biocontext/MPID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.g7jbvn", + "@id": "https://registry.identifiers.org/registry/pypi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/dg5b0d", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources.", + "@id": "https://registry.identifiers.org/registry/cattleqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BloodPAC" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/dg.5b0d" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://data.bloodpac.org/." - }, - "https://bioregistry.io/schema/#0000005": "00000d53-99bc-4d3e-8ed7-6dc358baccb7", - "https://bioregistry.io/schema/#0000006": "https://data.bloodpac.org/ga4gh/drs/v1/objects/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://data.bloodpac.org/ga4gh/drs/v1/objects/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://data.bloodpac.org/ga4gh/drs/v1/objects/00000d53-99bc-4d3e-8ed7-6dc358baccb7" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "dg5b0d" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pgx", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphosite.residue", + "@id": "https://fairsharing.org/FAIRsharing.c4e46c", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/ensembl.plant", + "@id": "https://www.uniprot.org/database/DB-0126", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/DBEST", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/paxdb.organism", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEUROLEX", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ABCD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://orcid.org/0000-0002-5171-1668", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Urmas Kõljalg" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "urmas.koljalg@ut.ee" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/registry/world2dpage", + "@id": "https://bioregistry.io/registry/nemo2", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots.", + "http://purl.org/dc/terms/description": "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The World-2DPAGE database" + "@value": "Neural ElectroMagnetic Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/world2dpage" + "@id": "http://aber-owl.net/ontology/NEMO" }, { - "@id": "https://www.uniprot.org/database/DB-0121" + "@id": "https://bioportal.bioontology.org/ontologies/NEMO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.n66krd" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "ontology" }, { - "@value": "structure" + "@value": "life science" }, { - "@value": "2d-page" + "@value": "cognitive neuroscience" + }, + { + "@value": "neurobiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://world-2dpage.expasy.org/repository/" + "@id": "http://aimlab.cs.uoregon.edu/NEMO/web/index.html" }, - "https://bioregistry.io/schema/#0000005": "0020", - "https://bioregistry.io/schema/#0000006": "https://world-2dpage.expasy.org/repository/$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "https://bioregistry.io/schema/#0000005": "0000196", + "https://bioregistry.io/schema/#0000006": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/NEMO/24/nemo.owl" }, - "https://bioregistry.io/schema/#0000024": "https://world-2dpage.expasy.org/repository/", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0612-0970" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://world-2dpage.expasy.org/repository/0020" + "@id": "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_0000196" }, "https://bioregistry.io/schema/#0000029": { - "@value": "world2dpage" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/WORMPEP", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "nemo2" } }, { - "@id": "https://fairsharing.org/FAIRsharing.p1sejz", + "@id": "https://fairsharing.org/FAIRsharing.sjhvyy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/PMR", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CRISPRDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://www.ontobee.org/ontology/COLAO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/PGX", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/funcbase.human", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/cazy", + "@id": "https://registry.bio2kg.org/resource/bactibase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/IOBC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENA.EMBL", + "@id": "https://registry.bio2kg.org/resource/vz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/cgsc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0001-9666-6285", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Coli Genetic Stock Center" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.re3data.org/repository/r3d100010585" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CGSC" - }, - { - "@id": "https://registry.bio2kg.org/resource/cgsc" - }, - { - "@id": "https://registry.identifiers.org/registry/cgsc" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cgsc" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CGSC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.1tbrdz" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "gene" - }, - { - "@value": "life science" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://cgsc.biology.yale.edu/index.php" - }, - "https://bioregistry.io/schema/#0000005": "74", - "https://bioregistry.io/schema/#0000006": "http://cgsc.biology.yale.edu/Site.php?ID=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://cgsc.biology.yale.edu/Site.php?ID=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://cgsc.biology.yale.edu/Site.php?ID=74" + "@value": "R. Burke Squires" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "cgsc" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "burkesquires@gmail.com" } }, { - "@id": "https://bioregistry.io/registry/gfo", + "@id": "https://bioregistry.io/registry/hpm.peptide", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas.", + "http://purl.org/dc/terms/description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "General Formal Ontology" + "@value": "Human Proteome Map Peptide" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/GFO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.175hsz" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GFO" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/biocontext/HPM.PEPTIDE" }, { - "@value": "life science" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpm.peptide" }, { - "@value": "biomedical science" + "@id": "https://registry.identifiers.org/registry/hpm.peptide" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.onto-med.de/ontologies/gfo" - }, - "https://bioregistry.io/schema/#0000005": "projects_to", - "https://bioregistry.io/schema/#0000006": "http://www.onto-med.de/ontologies/gfo.owl#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.onto-med.de/ontologies/gfo.owl" + "@id": "http://www.humanproteomemap.org/index.php" }, + "https://bioregistry.io/schema/#0000005": "9606117", + "https://bioregistry.io/schema/#0000006": "http://www.humanproteomemap.org/spectrum.php?pep_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nc287de27a14b496ea3776eeac440e444" - }, - "https://bioregistry.io/schema/#0000024": "http://www.onto-med.de/ontologies/gfo.owl#", + "https://bioregistry.io/schema/#0000024": "http://www.humanproteomemap.org/spectrum.php?pep_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.onto-med.de/ontologies/gfo.owl#projects_to" + "@id": "http://www.humanproteomemap.org/spectrum.php?pep_id=9606117" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gfo" - } - }, - { - "@id": "_:Nc287de27a14b496ea3776eeac440e444", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Heinrich Herre" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "heinrich.herre@imise.uni-leipzig.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_ruleID", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/xpo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "hpm.peptide" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/TC", + "@id": "https://fairsharing.org/FAIRsharing.6dfe9b", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://orcid.org/0000-0002-5892-6506", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nathan Baker" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nathan.baker@pnnl.gov" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://aber-owl.net/ontology/TO", + "@id": "http://edamontology.org/data_2756", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prodom", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sitex", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/nmpdr", + "@id": "https://bioregistry.io/registry/rrid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.", + "http://purl.org/dc/terms/description": "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "National Microbial Pathogen Data Resource" + "@value": "Research Resource Identification" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/NMPDR" + "@id": "https://registry.identifiers.org/registry/rrid" }, { - "@id": "https://registry.bio2kg.org/resource/nmpdr" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.nmpdr.org" - }, - "https://bioregistry.io/schema/#0000005": "fig|306254.1.peg.183", - "https://bioregistry.io/schema/#0000006": "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1", - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000024": "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=", - "https://bioregistry.io/schema/#0000029": { - "@value": "nmpdr" - } - }, - { - "@id": "http://aber-owl.net/ontology/CEPH", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot.disease", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://fairsharing.org/FAIRsharing.ATwSZG" + }, { - "@id": "https://bioregistry.io/registry/uniprot" + "@id": "https://bioregistry.io/metaregistry/biocontext/RRID" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/rrid" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Diseases" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SPDI" + "@value": "life science" }, { - "@id": "http://www.wikidata.org/entity/P11430" + "@value": "chemistry" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.uniprot.org/diseases/" - }, - "https://bioregistry.io/schema/#0000005": "DI-04240", - "https://bioregistry.io/schema/#0000006": "https://www.uniprot.org/diseases/$1", - "https://bioregistry.io/schema/#0000008": "^DI-\\d{5}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://rest.uniprot.org/diseases/stream?compressed=true&format=obo&query=%28%2A%29" + "@id": "https://rrid.site" }, + "https://bioregistry.io/schema/#0000005": "AB_262044", + "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z]+.+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "SP_DI" - }, - { - "@value": "DI" - } - ], - "https://bioregistry.io/schema/#0000024": "https://www.uniprot.org/diseases/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5497-0243" + }, + "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.uniprot.org/diseases/DI-04240" + "@id": "https://scicrunch.org/resolver/RRID:AB_262044" }, "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot.disease" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JCM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "rrid" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/oae", + "@id": "http://www.wikidata.org/entity/P11430", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/MMO", + "@id": "http://www.ontobee.org/ontology/TGMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PMC", + "@id": "https://registry.identifiers.org/registry/biosystems", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.reaction", + "@id": "https://registry.identifiers.org/registry/sedml.format", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/vsao", + "@id": "https://bioregistry.io/registry/biorxiv", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Vertebrate skeletal anatomy ontology.", + "http://purl.org/dc/terms/description": "The bioRxiv is a preprint server for biology", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Skeletal Anatomy Ontology" + "@value": "bioRxiv" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/VSAO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao" - }, - { - "@id": "http://aber-owl.net/ontology/VSAO" - }, - { - "@id": "https://www.obofoundry.org/ontology/vsao" + "@id": "http://www.wikidata.org/entity/P3951" }, { - "@id": "https://registry.bio2kg.org/resource/vao" + "@id": "https://bioregistry.io/metaregistry/go/resolve/bioRxiv" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "vertebrate" - }, - { - "@value": "anatomy" - }, - { - "@value": "obo" + "@value": "preprints" }, { - "@value": "ontology" + "@value": "publishing" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nescent.org/phenoscape/Main_Page" - }, - "https://bioregistry.io/schema/#0000005": "VSAO_0000183", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VSAO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/vsao.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3162-7490" + "@id": "https://biorxiv.org" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "VSAO_RETIRED" + "https://bioregistry.io/schema/#0000005": "2022.07.08.499378", + "https://bioregistry.io/schema/#0000006": "https://www.biorxiv.org/content/10.1101/$1", + "https://bioregistry.io/schema/#0000008": "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://www.biorxiv.org/content/10.1101/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.biorxiv.org/content/10.1101/2022.07.08.499378" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VSAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "vsao" + "@value": "biorxiv" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NDC", + "@id": "https://registry.identifiers.org/registry/multicellds.snapshot", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/inchi", + "@id": "https://bioregistry.io/registry/glytoucan", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier.", + "http://purl.org/dc/terms/description": "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "InChI" + "@value": "GlyTouCan" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glytoucan" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/INCHI" + "@id": "https://bioregistry.io/metaregistry/biocontext/GLYTOUCAN" }, { - "@id": "https://fairsharing.org/FAIRsharing.ddk9t9" + "@id": "https://www.re3data.org/repository/r3d100012388" }, { - "@id": "https://registry.identifiers.org/registry/inchi" + "@id": "https://registry.identifiers.org/registry/glytoucan" }, { - "@id": "http://www.wikidata.org/entity/P234" + "@id": "https://fairsharing.org/FAIRsharing.5Pze7l" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "knowledge and information systems" - }, - { - "@value": "cheminformatics" + "@value": "glycomics" }, { - "@value": "chemistry" + "@value": "structural biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.chemspider.com/" + "@id": "https://glytoucan.org" }, - "https://bioregistry.io/schema/#0000005": "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3", - "https://bioregistry.io/schema/#0000006": "http://www.chemspider.com/$1", - "https://bioregistry.io/schema/#0000008": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$", + "https://bioregistry.io/schema/#0000005": "G00054MO", + "https://bioregistry.io/schema/#0000006": "https://glytoucan.org/Structures/Glycans/$1", + "https://bioregistry.io/schema/#0000008": "^G[0-9]{5}[A-Z]{2}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.chemspider.com/", + "https://bioregistry.io/schema/#0000024": "https://glytoucan.org/Structures/Glycans/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.chemspider.com/InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3" + "@id": "https://glytoucan.org/Structures/Glycans/G00054MO" }, "https://bioregistry.io/schema/#0000029": { - "@value": "inchi" + "@value": "glytoucan" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniparc", + "@id": "https://registry.identifiers.org/registry/odc.sci", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-2121-365X", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lin Huang" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "huanglin36@mail.sysu.edu.cn" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/TAXRANK", + "@id": "https://registry.identifiers.org/registry/sabiork.ec", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.1fbc5y", + "@id": "https://fairsharing.org/FAIRsharing.3t5qc3", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P2158", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/swo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/doap", + "@id": "https://bioregistry.io/registry/mpio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects.", + "http://purl.org/dc/terms/description": "An ontology of minimum information regarding potential drug-drug interaction information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ewilderj/doap" + "@id": "https://github.com/MPIO-Developers/MPIO" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Description of a Project" + "@value": "Minimum PDDI Information Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "rdf" + "@id": "https://bioregistry.io/metaregistry/biocontext/MPIO" }, { - "@value": "metadata" + "@id": "http://www.ontobee.org/ontology/MPIO" }, { - "@value": "semantic web" + "@id": "https://bioportal.bioontology.org/ontologies/MPIO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpio" + }, + { + "@id": "https://www.obofoundry.org/ontology/mpio" + }, + { + "@id": "http://aber-owl.net/ontology/MPIO" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/ewilderj/doap/wiki" - }, - "https://bioregistry.io/schema/#0000005": "Project", - "https://bioregistry.io/schema/#0000006": "http://usefulinc.com/ns/doap#$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nd77a505b50a148869c0fc766eb978e4c" - }, - "https://bioregistry.io/schema/#0000024": "http://usefulinc.com/ns/doap#", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://usefulinc.com/ns/doap#Project" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "doap" - } - }, - { - "@id": "_:Nd77a505b50a148869c0fc766eb978e4c", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Edd Wilder-James" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "edd@usefulinc.com" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.2s4n8r", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/registry/oncotree", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OncoTree" - }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "oncology" - }, - { - "@value": "clinical decision support systems" + "@value": "ontology" }, { - "@value": "cancer" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://oncotree.mskcc.org" + "@id": "https://github.com/MPIO-Developers/MPIO" + }, + "https://bioregistry.io/schema/#0000005": "0000004", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MPIO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mpio.owl" }, - "https://bioregistry.io/schema/#0000005": "BLL", - "https://bioregistry.io/schema/#0000006": "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/efo" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1834-3856" }, - "https://bioregistry.io/schema/#0000024": "http://oncotree.mskcc.org/api/tumorTypes/search/code/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MPIO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://oncotree.mskcc.org/api/tumorTypes/search/code/BLL" + "@id": "http://purl.obolibrary.org/obo/MPIO_0000004" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oncotree" - } - }, - { - "@id": "http://aber-owl.net/ontology/ATOL", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/InterPro", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pride", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/oae", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://www.ontobee.org/ontology/ARO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@value": "mpio" } }, { - "@id": "https://bioregistry.io/registry/imgt.hla", + "@id": "https://bioregistry.io/registry/upa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature.", + "http://purl.org/dc/terms/description": "A manually curated resource for the representation and annotation of metabolic pathways", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/geneontology/unipathway" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "IMGT/HLA human major histocompatibility complex sequence database" + "@value": "Unipathway" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/imgt.hla" - }, - { - "@id": "http://edamontology.org/data_2773" + "@id": "https://registry.bio2kg.org/resource/unipathway" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/IMGT_HLA" + "@id": "https://bioportal.bioontology.org/ontologies/UPA" }, { - "@id": "https://fairsharing.org/FAIRsharing.e28v7g" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/upa" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA" + "@id": "https://www.obofoundry.org/ontology/upa" }, { - "@id": "https://www.re3data.org/repository/r3d100010804" + "@id": "http://aber-owl.net/ontology/UPA" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IPD-IMGT/HLA" + "@id": "http://www.ontobee.org/ontology/UPA" }, { - "@id": "https://registry.bio2kg.org/resource/imgthla" + "@id": "https://bioregistry.io/metaregistry/biocontext/UNIPATHWAY" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/IMGT/HLA" + "@id": "http://edamontology.org/data_2645" }, { - "@id": "https://registry.identifiers.org/registry/imgt.hla" + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniPathway" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "rna" + "@value": "pathway" }, { - "@value": "biomedical science" + "@value": "ontology" }, { - "@value": "immunogenetics" - }, + "@value": "obo" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/geneontology/unipathway" + }, + "https://bioregistry.io/schema/#0000005": "UCR00513", + "https://bioregistry.io/schema/#0000006": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1", + "https://bioregistry.io/schema/#0000008": "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/upa.owl" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000017": { + "@id": "https://bioregistry.io/registry/ro" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-1216-2969" + }, + "https://bioregistry.io/schema/#0000023": [ { - "@value": "dna" + "@value": "unipathway" }, { - "@value": "immunology" + "@value": "UPa" }, { - "@value": "protein" + "@value": "unipathway.pathway" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/imgt/hla/allele.html" - }, - "https://bioregistry.io/schema/#0000005": "A*01:01:01:01", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1", - "https://bioregistry.io/schema/#0000008": "^[A-Z0-9*:]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-2855-4120" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "IPD-IMGT/HLA" + "https://bioregistry.io/schema/#0000024": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=UCR00513" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" + "https://bioregistry.io/schema/#0000029": { + "@value": "upa" + } + }, + { + "@id": "https://bioregistry.io/registry/evm", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?A*01:01:01:01" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "eVOC mouse development stage" }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "imgt.hla" + "@value": "evm" } }, { - "@id": "https://www.re3data.org/repository/r3d100011479", + "@id": "https://www.uniprot.org/database/DB-0113", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/uniprot" } }, { - "@id": "https://registry.identifiers.org/registry/iuphar.family", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/IMSR_EM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://registry.bio2kg.org/resource/eco", + "@id": "https://fairsharing.org/FAIRsharing.ngv2xx", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/DisProt", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.344", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "http://www.ontobee.org/ontology/MFMO", + "@id": "https://fairsharing.org/FAIRsharing.ge1c3p", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/vmc", - "@type": "https://bioregistry.io/schema/#0000001", + "@id": "https://bioregistry.io/metaregistry/biocontext/xml", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://orcid.org/0000-0002-1618-9827", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Variation Modelling Collaboration" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC" + "@value": "Gary L Andersen" }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000029": { - "@value": "vmc" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "GLAndersen@lbl.gov" } }, { - "@id": "https://bioregistry.io/registry/tao", + "@id": "http://aber-owl.net/ontology/FBDV", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/aero", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa", + "http://purl.org/dc/terms/description": "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Teleost Anatomy Ontology" + "@value": "Adverse Event Reporting Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAO" + "@id": "https://bioregistry.io/metaregistry/biocontext/AERO" }, { - "@id": "https://bioportal.bioontology.org/ontologies/TAO" + "@id": "http://aber-owl.net/ontology/AERO" }, { - "@id": "https://registry.bio2kg.org/resource/tao" + "@id": "https://www.obofoundry.org/ontology/aero" }, { - "@id": "https://www.obofoundry.org/ontology/tao" + "@id": "https://bioportal.bioontology.org/ontologies/AERO" }, { - "@id": "http://aber-owl.net/ontology/TAO" + "@id": "https://fairsharing.org/FAIRsharing.rycy2x" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aero" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "anatomy" + "@value": "medicine" }, { - "@value": "classification" + "@value": "biomedical science" + }, + { + "@value": "ontology" + }, + { + "@value": "preclinical studies" }, { "@value": "obo" }, { - "@value": "ontology" + "@value": "health science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology" + "@id": "http://purl.obolibrary.org/obo/aero" }, - "https://bioregistry.io/schema/#0000005": "0000086", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAO_$1", + "https://bioregistry.io/schema/#0000005": "0000125", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/AERO_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/tao.owl" + "@id": "http://purl.obolibrary.org/obo/aero.owl" }, "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3162-7490" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "TAO_RETIRED" + "@id": "https://orcid.org/0000-0002-9551-6370" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/AERO_", "https://bioregistry.io/schema/#0000029": { - "@value": "tao" + "@value": "aero" } }, { - "@id": "https://bioregistry.io/registry/sgd.pathways", + "@id": "https://registry.identifiers.org/registry/disprot", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/swo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD).", + "http://purl.org/dc/terms/description": "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/allysonlister/swo" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Saccharomyces genome database pathways" + "@value": "Software ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/SGD.PATHWAYS" + "@id": "https://bioregistry.io/metaregistry/biocontext/SWO" }, { - "@id": "https://registry.identifiers.org/registry/sgd.pathways" + "@id": "http://www.ontobee.org/ontology/SWO" }, { - "@id": "https://registry.bio2kg.org/resource/sgd.pathways" + "@id": "https://www.obofoundry.org/ontology/swo" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways" + "@id": "http://aber-owl.net/ontology/SWO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sp3szt" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/SWO" + }, + { + "@id": "https://registry.bio2kg.org/resource/swo" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "sequence" + "@value": "computer science" }, { - "@value": "pathway" + "@value": "obo" }, { - "@value": "genome" + "@value": "ontology" + }, + { + "@value": "bioinformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pathway.yeastgenome.org/" + "@id": "https://github.com/allysonlister/swo" + }, + "https://bioregistry.io/schema/#0000005": "0000144", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SWO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/allysonlister/swo/master/swo.owl" }, - "https://bioregistry.io/schema/#0000005": "PWY3O-214", - "https://bioregistry.io/schema/#0000006": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1", - "https://bioregistry.io/schema/#0000008": "^PWY\\w{2}\\-\\d{3}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=PWY3O-214" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/mcro" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7702-4495" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SWO_", "https://bioregistry.io/schema/#0000029": { - "@value": "sgd.pathways" + "@value": "swo" } }, { - "@id": "https://registry.bio2kg.org/resource/snomedct", + "@id": "https://fairsharing.org/FAIRsharing.rs2815", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://aber-owl.net/ontology/dcelements", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/HOIP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/ivdb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/bams", + "@id": "https://bioregistry.io/registry/ghr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions.", + "http://purl.org/dc/terms/description": "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Brain Architecture Knowledge Management System Neuroanatomical Ontology" + "@value": "Genetics Home Reference" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bams1.org" + "@id": "https://medlineplus.gov/genetics/condition" + }, + "https://bioregistry.io/schema/#0000005": "saddan", + "https://bioregistry.io/schema/#0000006": "https://medlineplus.gov/genetics/condition/$1", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://medlineplus.gov/genetics/condition/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://medlineplus.gov/genetics/condition/saddan" }, - "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "bams" + "@value": "ghr" } }, { - "@id": "https://bioregistry.io/registry/smpdb", + "@id": "https://bioregistry.io/registry/vso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.", + "http://purl.org/dc/terms/description": "The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Small Molecule Pathway Database" + "@value": "Vital Sign Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/PathWhiz" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB" - }, - { - "@id": "http://edamontology.org/data_2659" - }, - { - "@id": "https://registry.identifiers.org/registry/smpdb" + "@id": "https://registry.bio2kg.org/resource/vso" }, { - "@id": "https://fairsharing.org/FAIRsharing.y1zyaq" + "@id": "https://bioportal.bioontology.org/ontologies/VSO" }, { - "@id": "https://registry.bio2kg.org/resource/smpdb" + "@id": "https://fairsharing.org/FAIRsharing.jjb2p2" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb" + "@id": "http://aber-owl.net/ontology/VSO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "chemical" + "@value": "owl" }, { - "@value": "pathway" + "@value": "health science" }, { - "@value": "life science" + "@value": "health" }, { - "@value": "metabolite" + "@value": "ontology" }, { - "@value": "human" + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://smpdb.ca/" + "@id": "https://bioportal.bioontology.org/ontologies/VSO" + }, + "https://bioregistry.io/schema/#0000005": "0000041", + "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://aber-owl.net/media/ontologies/VSO/1/vso.owl" }, - "https://bioregistry.io/schema/#0000005": "SMP0000219", - "https://bioregistry.io/schema/#0000006": "https://smpdb.ca/view/$1", - "https://bioregistry.io/schema/#0000008": "^SMP\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "SMP" + "https://bioregistry.io/schema/#0000019": { + "@id": "_:N6f401262a7d84d76b6c84f6fcb7f2f2f" }, - "https://bioregistry.io/schema/#0000024": "https://smpdb.ca/view/", + "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://smpdb.ca/view/SMP0000219" + "@id": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_0000041" }, "https://bioregistry.io/schema/#0000029": { - "@value": "smpdb" + "@value": "vso" } }, { - "@id": "http://www.wikidata.org/entity/P1832", + "@id": "_:N6f401262a7d84d76b6c84f6fcb7f2f2f", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Albert Goldfain" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "albertgoldfain@gmail.com" + } + }, + { + "@id": "https://orcid.org/0000-0003-1617-8244", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lindsay Cowell" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "Lindsay.Cowell@utsouthwestern.edu" + } + }, + { + "@id": "http://www.ontobee.org/ontology/MS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/glida.ligand", + "@id": "http://www.ontobee.org/ontology/PSDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "http://aber-owl.net/ontology/TAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0197", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/hipsci", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.", + "http://purl.org/dc/terms/description": "Cell line databases/resources", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GLIDA Ligand" + "@value": "Human Induced Pluripotent Stem Cells Initiative" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GLIDA.LIGAND" - }, - { - "@id": "https://registry.identifiers.org/registry/glida.ligand" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/glida.ligand" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/" + "@id": "https://www.hipsci.org" }, - "https://bioregistry.io/schema/#0000005": "L000001", - "https://bioregistry.io/schema/#0000006": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^L\\d+$", + "https://bioregistry.io/schema/#0000005": "HPSI0114i-bezi_1", + "https://bioregistry.io/schema/#0000006": "https://www.hipsci.org/lines/#/lines/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=", + "https://bioregistry.io/schema/#0000024": "https://www.hipsci.org/lines/#/lines/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=L000001" + "@id": "https://www.hipsci.org/lines/#/lines/HPSI0114i-bezi_1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "glida.ligand" + "@value": "hipsci" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PLANA", + "@id": "https://www.obofoundry.org/ontology/hao", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/wbbt", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0002-0142-5591", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aceview.worm", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://orcid.org/0000-0002-8688-6599", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Citlalli Mejía-Almonte" + "@value": "Jim Balhoff" }, "http://xmlns.com/foaf/0.1/mbox": { - "@value": "citlalli.mejiaalmonte@gmail.com" + "@value": "balhoff@renci.org" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dxx0c", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCBIAssembly", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/agsc", + "@id": "https://bioregistry.io/registry/ro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]", + "http://purl.org/dc/terms/description": "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ambystoma Genetic Stock Center" + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/oborel/obo-relations" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/AGSC" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Relation Ontology" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "adult" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/RO" }, { - "@value": "larvae" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ro" }, { - "@value": "salamander" + "@id": "http://aber-owl.net/ontology/RO" }, { - "@value": "ambystoma" + "@id": "https://fairsharing.org/FAIRsharing.9w8ea0" }, { - "@value": "embryo" + "@id": "https://registry.bio2kg.org/resource/ro" }, { - "@value": "k-12 teacher" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://ambystoma.uky.edu/genetic-stock-center/" - }, - "https://bioregistry.io/schema/#0000005": "100E", - "https://bioregistry.io/schema/#0000006": "https://scicrunch.org/resolver/RRID:AGSC_$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://scicrunch.org/resolver/RRID:AGSC_", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://scicrunch.org/resolver/RRID:AGSC_100E" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "agsc" - } - }, - { - "@id": "https://bioregistry.io/registry/bao", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/BioAssayOntology/BAO/wiki" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BioAssay Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/metaregistry/go/resolve/RO" + }, { - "@id": "https://bioportal.bioontology.org/ontologies/BAO" + "@id": "https://www.obofoundry.org/ontology/ro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/bao" + "@id": "http://www.wikidata.org/entity/P3590" }, { - "@id": "http://www.ontobee.org/ontology/BAO" + "@id": "https://registry.identifiers.org/registry/ro" }, { - "@id": "https://fairsharing.org/FAIRsharing.mye76w" + "@id": "https://bioportal.bioontology.org/ontologies/OBOREL" }, { - "@id": "https://registry.identifiers.org/registry/bao" + "@id": "http://agroportal.lirmm.fr/ontologies/RO" }, { - "@id": "http://aber-owl.net/ontology/BAO" + "@id": "http://www.ontobee.org/ontology/RO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BAO" + "@id": "https://bioregistry.io/metaregistry/biocontext/RO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bao" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ro" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "biomedical science" + "@value": "ontology" }, { "@value": "life science" }, { - "@value": "biochemistry" + "@value": "relations" }, { - "@value": "ontology" + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioassayontology.org" + "@id": "https://oborel.github.io/" }, - "https://bioregistry.io/schema/#0000005": "0002989", - "https://bioregistry.io/schema/#0000006": "http://www.bioassayontology.org/bao#BAO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "0002533", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/RO_$1", + "https://bioregistry.io/schema/#0000008": "^(HOM)?\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.bioassayontology.org/bao/bao_complete.owl" + "@id": "http://purl.obolibrary.org/obo/ro.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N3592e45525ca4d49ad9426f35d117032" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "BAO" - }, - "https://bioregistry.io/schema/#0000024": "http://www.bioassayontology.org/bao#BAO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioassayontology.org/bao#BAO_0002989" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bao" - } - }, - { - "@id": "_:N3592e45525ca4d49ad9426f35d117032", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Stephan Schurer" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sschurer@med.miami.edu" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sasbdb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioregistry.io/registry/micro", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology of prokaryotic phenotypic and metabolic characters", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/carrineblank/MicrO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology of Prokaryotic Phenotypic and Metabolic Characters" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "https://bioregistry.io/schema/#0000018": [ { - "@id": "http://aber-owl.net/ontology/MICRO" + "@id": "https://bioregistry.io/registry/zp" }, { - "@id": "https://fairsharing.org/FAIRsharing.brhpb0" + "@id": "https://bioregistry.io/registry/pso" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MICRO" + "@id": "https://bioregistry.io/registry/pcl" }, { - "@id": "https://www.obofoundry.org/ontology/micro" + "@id": "https://bioregistry.io/registry/planp" }, { - "@id": "http://www.ontobee.org/ontology/MICRO" + "@id": "https://bioregistry.io/registry/poro" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/micro" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "https://bioregistry.io/registry/ecocore" + }, { - "@value": "obo" + "@id": "https://bioregistry.io/registry/hso" }, { - "@value": "microbiology" + "@id": "https://bioregistry.io/registry/upa" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/registry/cteno" }, { - "@value": "bioinformatics" + "@id": "https://bioregistry.io/registry/ecto" + }, + { + "@id": "https://bioregistry.io/registry/cdno" + }, + { + "@id": "https://bioregistry.io/registry/cl" + }, + { + "@id": "https://bioregistry.io/registry/rbo" + }, + { + "@id": "https://bioregistry.io/registry/plana" + }, + { + "@id": "https://bioregistry.io/registry/foodon" + }, + { + "@id": "https://bioregistry.io/registry/clyh" + }, + { + "@id": "https://bioregistry.io/registry/colao" + }, + { + "@id": "https://bioregistry.io/registry/clao" + }, + { + "@id": "https://bioregistry.io/registry/aism" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/pco" + }, + { + "@id": "https://bioregistry.io/registry/fovt" + }, + { + "@id": "https://bioregistry.io/registry/psdo" + }, + { + "@id": "https://bioregistry.io/registry/genepio" + }, + { + "@id": "https://bioregistry.io/registry/envo" + }, + { + "@id": "https://bioregistry.io/registry/agro" + }, + { + "@id": "https://bioregistry.io/registry/proco" + }, + { + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/ontoavida" + }, + { + "@id": "https://bioregistry.io/registry/lepao" + }, + { + "@id": "https://bioregistry.io/registry/maxo" + }, + { + "@id": "https://bioregistry.io/registry/ecao" + }, + { + "@id": "https://bioregistry.io/registry/xpo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/carrineblank/MicrO" - }, - "https://bioregistry.io/schema/#0000005": "0002999", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MICRO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/micro.owl" - }, - "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mco" - }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2100-6351" + "@id": "https://orcid.org/0000-0002-6601-2165" + }, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "RO_proposed_relation" + }, + { + "@value": "oborel" + }, + { + "@value": "obo_rel" + } + ], + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/RO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/RO_0002533" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MICRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "micro" + "@value": "ro" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.compartment", + "@id": "https://bioregistry.io/registry/hms.lincs.compound", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "HMS LINCS Compound" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://lincs.hms.harvard.edu/db/sm/" + }, + "https://bioregistry.io/schema/#0000005": "10001-101", + "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/sm/$1", + "https://bioregistry.io/schema/#0000008": "^1\\d{4}-\\d{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "hmsl_id" + }, + { + "@value": "HMS-LINCS" + } + ], + "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/sm/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://lincs.hms.harvard.edu/db/sm/10001-101" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hms.lincs.compound" } }, { - "@id": "http://www.wikidata.org/entity/P563", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oma.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/oa", + "@id": "https://bioregistry.io/registry/nkos", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture.", + "http://purl.org/dc/terms/description": "NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.\n\nKnowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Web Annotation Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/OA" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OA" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/oa" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "@value": "Networked Knowledge Organization Systems/Services/Structures" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/ns/oa" - }, - "https://bioregistry.io/schema/#0000005": "sourceDateStart", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/oa#$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/OA/4/oa.owl" + "@id": "http://w3id.org/nkos" }, + "https://bioregistry.io/schema/#0000005": "alignedWith", + "https://bioregistry.io/schema/#0000006": "http://w3id.org/nkos/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/oa#", + "https://bioregistry.io/schema/#0000024": "http://w3id.org/nkos/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/oa#sourceDateStart" + "@id": "http://w3id.org/nkos/alignedWith" }, "https://bioregistry.io/schema/#0000029": { - "@value": "oa" + "@value": "nkos" } }, { - "@id": "http://aber-owl.net/ontology/DINTO", + "@id": "https://registry.identifiers.org/registry/oma.protein", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.84c1a7", + "@id": "https://registry.identifiers.org/registry/oci", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.wy4egf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.obofoundry.org/ontology/ecao", + "@id": "https://www.re3data.org/repository/r3d100012435", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://fairsharing.org/FAIRsharing.3wbgm0", + "@id": "https://fairsharing.org/FAIRsharing.2ajtcf", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/nif", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/nif.grossanatomy" - }, - { - "@id": "https://bioregistry.io/registry/nlx.dys" - }, - { - "@id": "https://bioregistry.io/registry/nlx.inv" - }, - { - "@id": "https://bioregistry.io/registry/nif.std" - }, - { - "@id": "https://bioregistry.io/registry/nlx.mol" - }, - { - "@id": "https://bioregistry.io/registry/nlx.cell" - }, - { - "@id": "https://bioregistry.io/registry/neurolex" - }, - { - "@id": "https://bioregistry.io/registry/nif.ext" - }, - { - "@id": "https://bioregistry.io/registry/nlx.org" - }, - { - "@id": "https://bioregistry.io/registry/nlx.anat" - }, - { - "@id": "https://bioregistry.io/registry/nif.dysfunction" - }, - { - "@id": "https://bioregistry.io/registry/nlx.func" - }, - { - "@id": "https://bioregistry.io/registry/nlx.sub" - }, - { - "@id": "https://bioregistry.io/registry/nlx.chem" - }, - { - "@id": "https://bioregistry.io/registry/nlx.oen" - }, - { - "@id": "https://bioregistry.io/registry/nlx.qual" - }, + "@id": "https://bioregistry.io/registry/ddinter.drug", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Curated Drug-Drug Interactions Database - Drug" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/nlx.res" + "@value": "relationships" }, { - "@id": "https://bioregistry.io/registry/nif.cell" + "@value": "chemistry" }, { - "@id": "https://bioregistry.io/registry/nlx.br" + "@value": "drugs" } - ] - }, - { - "@id": "http://edamontology.org/data_1155", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://ddinter.scbdd.com" + }, + "https://bioregistry.io/schema/#0000005": "DDInter20", + "https://bioregistry.io/schema/#0000006": "http://ddinter.scbdd.com/ddinter/drug-detail/$1", + "https://bioregistry.io/schema/#0000008": "^DDInter\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-3604-3785" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://ddinter.scbdd.com/ddinter/drug-detail/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://ddinter.scbdd.com/ddinter/drug-detail/DDInter20" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ddinter.drug" } }, { - "@id": "http://www.wikidata.org/entity/P1153", + "@id": "https://www.obofoundry.org/ontology/fix", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmo", + "@id": "https://bioregistry.io/metaregistry/biocontext/YRCPDR", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/spdx", + "@id": "https://bioregistry.io/metaregistry/biocontext/PATO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/fbcv", + "@id": "https://registry.identifiers.org/registry/mmp.fun", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PHARMGKB", + "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/bigg.metabolite", + "@id": "https://registry.identifiers.org/registry/doqcs.model", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.bio2kg.org/resource/tred", + "@id": "https://www.obofoundry.org/ontology/foodon", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.identifiers.org/registry/toxoplasma", + "@id": "https://registry.identifiers.org/registry/edam", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/maizegdb.locus", + "@id": "https://bioregistry.io/registry/github.pull", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MaizeGDB is the maize research community's central repository for genetics and genomics information.", + "http://purl.org/dc/terms/description": "A pull request in any public repository on GitHub.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MaizeGDB Locus" + "@value": "GitHub Pull Request" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/maizegdb.locus" - }, - { - "@id": "https://registry.identifiers.org/registry/maizegdb.locus" - }, - { - "@id": "https://www.re3data.org/repository/r3d100010795" - }, - { - "@id": "https://registry.bio2kg.org/resource/maizegdb" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.aq280w" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MaizeGDB_Locus" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MAIZEGDB.LOCUS" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MaizeGDB" - }, - { - "@id": "https://www.uniprot.org/database/DB-0058" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" - }, - { - "@value": "genomics" + "@value": "software engineering" }, { - "@value": "life science" + "@value": "version control" }, { - "@value": "genetics" + "@value": "project management" }, { - "@value": "dna" + "@value": "knowledge and information systems" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.maizegdb.org/" + "@id": "https://github.com/" }, - "https://bioregistry.io/schema/#0000005": "25011", - "https://bioregistry.io/schema/#0000006": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "biopragmatics/bioregistry/416", + "https://bioregistry.io/schema/#0000006": "https://bioregistry.io/resolve/github/pull/$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "MaizeGDB" - }, - "https://bioregistry.io/schema/#0000024": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/resolve/github/pull/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25011" + "@id": "https://bioregistry.io/resolve/github/pull/biopragmatics/bioregistry/416" }, "https://bioregistry.io/schema/#0000029": { - "@value": "maizegdb.locus" + "@value": "github.pull" } }, { - "@id": "http://edamontology.org/data_2302", + "@id": "https://bioregistry.io/schema/#0000001", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A type for entries in the Bioregistry's registry." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Resource" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/PAV", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ohbpNw", + "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.pathway", + "@id": "http://www.ontobee.org/ontology/WBls", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0177", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biosample", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.REACTION", + "@id": "https://registry.identifiers.org/registry/wb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/prints", + "@id": "https://bioregistry.io/registry/phosphosite.sitegroup", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours.", + "http://purl.org/dc/terms/description": "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PRINTS compendium of protein fingerprints" + "@value": "PhosphoSite Site Group" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/prints" + "@value": "biochemistry" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/PRINTS" + "@value": "post-translational modification" }, { - "@id": "https://fairsharing.org/FAIRsharing.h8r843" + "@value": "grouping" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.phosphosite.org" + }, + "https://bioregistry.io/schema/#0000005": "447860", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "phosphosite.sitegroup" + } + }, + { + "@id": "https://bioregistry.io/registry/phylomedb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "PhylomeDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phylomedb" }, { - "@id": "https://registry.identifiers.org/registry/prints" + "@id": "https://registry.identifiers.org/registry/phylomedb" }, { - "@id": "https://www.uniprot.org/database/DB-0082" + "@id": "https://fairsharing.org/FAIRsharing.7hxxc4" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PRINTS" + "@id": "https://registry.bio2kg.org/resource/phylomedb" }, { - "@id": "https://registry.bio2kg.org/resource/sprint" + "@id": "https://bioregistry.io/metaregistry/biocontext/PHYLOMEDB" + }, + { + "@id": "https://www.uniprot.org/database/DB-0144" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -148286,1759 +148441,1780 @@ "@value": "protein" }, { - "@value": "biology" + "@value": "life science" }, { - "@value": "domain" + "@value": "phylogenomics" }, { - "@value": "structural biology" + "@value": "phylogenetics" + }, + { + "@value": "phylogeny" + }, + { + "@value": "genome" + }, + { + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioinf.manchester.ac.uk/dbbrowser/sprint/" + "@id": "http://phylomedb.org/" }, - "https://bioregistry.io/schema/#0000005": "PR00001", - "https://bioregistry.io/schema/#0000006": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off", - "https://bioregistry.io/schema/#0000008": "^PR\\d{5}$", + "https://bioregistry.io/schema/#0000005": "Phy000CLXM_RAT", + "https://bioregistry.io/schema/#0000006": "http://phylomedb.org/?seqid=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "sprint" - }, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/prints:", + "https://bioregistry.io/schema/#0000024": "http://phylomedb.org/?seqid=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=PR00001&display_opts=Prints&category=None&queryform=false®expr=off" + "@id": "http://phylomedb.org/?seqid=Phy000CLXM_RAT" }, "https://bioregistry.io/schema/#0000029": { - "@value": "prints" + "@value": "phylomedb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METANETX.REACTION", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Kerafast", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.identifiers.org/registry/pharmgkb.disease", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/t4fs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/dsmz", + "@id": "https://bioregistry.io/registry/orcid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:\n\n- `PC`: positive control\n- `NC`: negative control\n- `AS`: antiserum\n- `PV`: plant viruses\n- `RT`: recommended test\n- `ACC`: human or animal cell line\n- `DSM`: microorganism cell line", + "http://purl.org/dc/terms/description": "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/ORCID" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Deutsche Sammlung von Mikroorganismen und Zellkulturen" + "@value": "Open Researcher and Contributor" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DSMZCellDive" + "@id": "https://fairsharing.org/FAIRsharing.nx58jg" }, { - "@id": "https://www.re3data.org/repository/r3d100010219" + "@id": "https://bioregistry.io/metaregistry/go/resolve/orcid" + }, + { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/ORCID" + }, + { + "@id": "https://bartoc.org/en/node/2021" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ORCID" + }, + { + "@id": "http://www.wikidata.org/entity/P496" + }, + { + "@id": "https://registry.identifiers.org/registry/orcid" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/orcid" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "person" + }, + { + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.dsmz.de" + "@id": "https://orcid.org" }, - "https://bioregistry.io/schema/#0000005": "ACC-1", - "https://bioregistry.io/schema/#0000006": "https://www.dsmz.de/collection/catalogue/details/culture/$1", - "https://bioregistry.io/schema/#0000008": "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$", + "https://bioregistry.io/schema/#0000005": "0000-0002-5355-2576", + "https://bioregistry.io/schema/#0000006": "https://orcid.org/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "DSMZCellDive" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4654-1403" }, - "https://bioregistry.io/schema/#0000024": "https://www.dsmz.de/collection/catalogue/details/culture/", + "https://bioregistry.io/schema/#0000023": [ + { + "@value": "ORCiD" + }, + { + "@value": "ORCID" + } + ], + "https://bioregistry.io/schema/#0000024": "https://orcid.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.dsmz.de/collection/catalogue/details/culture/ACC-1" + "@id": "https://orcid.org/0000-0002-5355-2576" }, "https://bioregistry.io/schema/#0000029": { - "@value": "dsmz" + "@value": "orcid" } }, { - "@id": "https://bioregistry.io/registry/vgnc", + "@id": "https://registry.identifiers.org/registry/tritrypdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/ccle", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee.", + "http://purl.org/dc/terms/description": "Datasets around different cancer cell lines generated by the Broad Institute and Novartis", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Gene Nomenclature Committee" + "@value": "Cancer Cell Line Encyclopedia Cells" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.uniprot.org/database/DB-0226" - }, - { - "@id": "https://registry.identifiers.org/registry/vgnc" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/VGNC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5NhJFK" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/VGNC" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "life science" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CCLE" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://vertebrate.genenames.org" + "@id": "https://www.cbioportal.org/study/summary?id=ccle_broad_2019" }, - "https://bioregistry.io/schema/#0000005": "3792", - "https://bioregistry.io/schema/#0000006": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{1,9}$", + "https://bioregistry.io/schema/#0000005": "BT20_BREAST", + "https://bioregistry.io/schema/#0000006": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/", + "https://bioregistry.io/schema/#0000023": { + "@value": "ccle.cell" + }, + "https://bioregistry.io/schema/#0000024": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/3792" + "@id": "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=BT20_BREAST" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vgnc" + "@value": "ccle" } }, { - "@id": "https://orcid.org/0000-0003-0007-6796", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "David Craik" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "d.craik@imb.uq.edu.au" + "@id": "https://www.obofoundry.org/ontology/mmo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/FBbi", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_338", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metanetx.chemical", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/napdi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/mimodb", + "@id": "https://www.re3data.org/repository/r3d100012171", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/noncodev4.gene", + "@id": "https://fairsharing.org/FAIRsharing.3nx7t", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/bel", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.", + "http://purl.org/dc/terms/description": "The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NONCODE v4 Gene" + "@value": "Biological Expression Language" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.dp0jvd" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "biology" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev4.gene" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV4.GENE" - }, - { - "@id": "https://registry.identifiers.org/registry/noncodev4.gene" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.bioinfo.org/NONCODEv4/" + "@id": "https://biological-expression-language.github.io/" }, - "https://bioregistry.io/schema/#0000005": "NONHSAG00001", - "https://bioregistry.io/schema/#0000006": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1", - "https://bioregistry.io/schema/#0000008": "^NONHSAG\\d{5}$", + "https://bioregistry.io/schema/#0000005": "9-1-1 Complex", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=NONHSAG00001" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-0728-781X" }, "https://bioregistry.io/schema/#0000029": { - "@value": "noncodev4.gene" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/om", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pharmgkb.pathways", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/EXAC.VARIANT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "bel" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OTL", + "@id": "https://bioregistry.io/metaregistry/biocontext/DOI", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.obofoundry.org/ontology/sibo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/phosphopoint.protein", + "@id": "https://bioregistry.io/registry/cdt", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information.", + "http://purl.org/dc/terms/description": "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PhosphoPoint Phosphoprotein" + "@value": "Current Dental Terminology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phosphopoint.protein" - }, - { - "@id": "https://registry.identifiers.org/registry/phosphopoint.protein" + "@id": "https://bartoc.org/en/node/20299" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.116" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://kinase.bioinformatics.tw/" + "@id": "https://www.ada.org/publications/CDT" + }, + "https://bioregistry.io/schema/#0000005": "1000001", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/oral-health-and-disease-ontologies/ohd-ontology/f19378ff192b6f9ea16133e85671e8359fc371cd/src/ontology/archive/CDTCodes%20as%20Classes_pruned.owl" }, - "https://bioregistry.io/schema/#0000005": "AURKA", - "https://bioregistry.io/schema/#0000006": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0", - "https://bioregistry.io/schema/#0000008": "^\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/phosphopoint.protein:", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=AURKA&drawing=0&sorting=0&kinome=0" + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/ohd" }, "https://bioregistry.io/schema/#0000029": { - "@value": "phosphopoint.protein" + "@value": "cdt" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biotools", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/IMGT.HLA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/pscdb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "http://aber-owl.net/ontology/OBA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://aber-owl.net/ontology/GFO", + "@id": "https://fairsharing.org/FAIRsharing.kx2md1", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.wikidata.org/entity/P11931", + "@id": "https://bioregistry.io/metaregistry/biocontext/OMIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfomd", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omp", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://aber-owl.net/ontology/CHEMROF", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genedb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.bio2kg.org/resource/giardiadb", + "@id": "http://www.ontobee.org/ontology/AFO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS", + "@id": "https://fairsharing.org/FAIRsharing.9sb9qh", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.inhibitor", + "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "https://bioregistry.io/registry/pharmacodb.dataset", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "@id": "https://orcid.org/0000-0001-8014-6648", "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PharmacoDB Datasets" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://pharmacodb.ca/datasets" - }, - "https://bioregistry.io/schema/#0000005": "1", - "https://bioregistry.io/schema/#0000006": "https://pharmacodb.ca/datasets/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://pharmacodb.ca/datasets/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://pharmacodb.ca/datasets/1" + "@value": "Daniel Schober" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pharmacodb.dataset" + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "schober@imbi.uni-freiburg.de" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.GENE", + "@id": "http://www.ontobee.org/ontology/NDF-RT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/gpmdb", + "@id": "https://fairsharing.org/FAIRsharing.cz9cnp", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "http://www.wikidata.org/entity/P9405", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0028", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/ensembl.metazoa", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns.", + "http://purl.org/dc/terms/description": "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Global Proteome Machine Database" + "@value": "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gpmdb" + "@id": "https://bioregistry.io/metaregistry/go/resolve/EnsemblMetazoa" }, { - "@id": "https://registry.identifiers.org/registry/gpmdb" + "@id": "https://fairsharing.org/FAIRsharing.c23cqq" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GPMDB" + "@id": "https://www.re3data.org/repository/r3d100011198" }, { - "@id": "https://fairsharing.org/FAIRsharing.fhcmwq" + "@id": "https://registry.identifiers.org/registry/ensembl.metazoa" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.metazoa" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ENSEMBL.METAZOA" + }, + { + "@id": "https://www.uniprot.org/database/DB-0149" + }, + { + "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "proteomics" + "@value": "comparative genomics" }, { - "@value": "bioinformatics" + "@value": "genomics" + }, + { + "@value": "genome" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gpmdb.thegpm.org/" + "@id": "https://metazoa.ensembl.org/" }, - "https://bioregistry.io/schema/#0000005": "GPM32310002988", - "https://bioregistry.io/schema/#0000006": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1", - "https://bioregistry.io/schema/#0000008": "^GPM\\d+$", + "https://bioregistry.io/schema/#0000005": "FBtr0084214", + "https://bioregistry.io/schema/#0000006": "https://metazoa.ensembl.org/id/$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=", + "https://bioregistry.io/schema/#0000024": "https://metazoa.ensembl.org/id/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=GPM32310002988" + "@id": "https://metazoa.ensembl.org/id/FBtr0084214" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gpmdb" + "@value": "ensembl.metazoa" } }, { - "@id": "https://bioregistry.io/registry/zfs", + "@id": "https://bioportal.bioontology.org/ontologies/MA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/pd_st", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/grsdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Developmental stages of the Zebrafish", + "http://purl.org/dc/terms/description": "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/cerivs/zebrafish-anatomical-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zebrafish developmental stages ontology" + "@value": "G-Rich Sequences Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/ZFS" - }, - { - "@id": "http://aber-owl.net/ontology/ZFS" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFS" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ZFS" + "@id": "https://registry.bio2kg.org/resource/grsdb" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/zfs" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grsdb" }, { - "@id": "https://www.obofoundry.org/ontology/zfs" + "@id": "https://registry.identifiers.org/registry/grsdb" }, { - "@id": "https://fairsharing.org/FAIRsharing.bc8ayj" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRSDB" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "marine biology" - }, - { - "@value": "developmental biology" - }, - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "anatomy" + "@value": "rna" }, { - "@value": "zoology" + "@value": "dna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://wiki.zfin.org/display/general/Anatomy+Atlases+and+Resources" - }, - "https://bioregistry.io/schema/#0000005": "0000050", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZFS_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/zfs.owl" + "@id": "http://bioinformatics.ramapo.edu/GRSDB2/" }, + "https://bioregistry.io/schema/#0000005": "10142", + "https://bioregistry.io/schema/#0000006": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2244-7917" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZFS_", + "https://bioregistry.io/schema/#0000024": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ZFS_0000050" + "@id": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=10142" }, "https://bioregistry.io/schema/#0000029": { - "@value": "zfs" + "@value": "grsdb" } }, { - "@id": "https://fairsharing.org/FAIRsharing.96f3gm", + "@id": "https://fairsharing.org/FAIRsharing.901nkj", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.identifiers.org/registry/inchikey", + "@id": "http://aber-owl.net/ontology/NCRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/merops.family", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/senso", + "@id": "https://bioregistry.io/registry/aro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing.", + "http://purl.org/dc/terms/description": "Antibiotic resistance genes and mutations", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/arpcard/aro" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Sensitive Data Ontology" + "@value": "Antibiotic Resistance Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/SENSO" + "@id": "https://www.obofoundry.org/ontology/aro" }, { - "@id": "http://aber-owl.net/ontology/SENSO" + "@id": "https://bioportal.bioontology.org/ontologies/ARO" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/ARO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/aro" + }, + { + "@id": "http://aber-owl.net/ontology/ARO" + }, + { + "@id": "http://www.ontobee.org/ontology/ARO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "obo" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/DataONEorg/sem-prov-ontologies" + "@id": "https://github.com/arpcard/aro" }, - "https://bioregistry.io/schema/#0000005": "00000003", - "https://bioregistry.io/schema/#0000006": "http://purl.dataone.org/odo/SENSO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "1000001", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ARO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/SENSO/1/senso.owl" + "@id": "http://purl.obolibrary.org/obo/aro.owl" }, "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0381-3766" + "@id": "https://orcid.org/0000-0002-1142-3063" }, - "https://bioregistry.io/schema/#0000024": "http://purl.dataone.org/odo/SENSO_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ARO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.dataone.org/odo/SENSO_00000003" + "@id": "http://purl.obolibrary.org/obo/ARO_1000001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "senso" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/sbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "aro" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB-KW", + "@id": "https://registry.identifiers.org/registry/aop.relationships", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/openalex", + "@id": "https://bioregistry.io/registry/civic.did", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OpenAlex" - }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://purl.org/dc/terms/description": "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement.", + "http://purl.org/dc/terms/isPartOf": [ { - "@value": "wikidata" + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, { - "@value": "knowledge graph" + "@id": "https://bioregistry.io/registry/civic" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://openalex.org/" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "CIViC Disease" }, - "https://bioregistry.io/schema/#0000005": "W2741809807", - "https://bioregistry.io/schema/#0000006": "https://openalex.org/$1", - "https://bioregistry.io/schema/#0000008": "^[WAICV]\\d{2,}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-1613-5981" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/civic.did" }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://civicdb.org/" }, - "https://bioregistry.io/schema/#0000024": "https://openalex.org/", + "https://bioregistry.io/schema/#0000005": "46", + "https://bioregistry.io/schema/#0000006": "https://civicdb.org/links/diseases/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://civicdb.org/links/diseases/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://openalex.org/W2741809807" + "@id": "https://civicdb.org/links/diseases/46" }, "https://bioregistry.io/schema/#0000029": { - "@value": "openalex" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cosmic", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "http://aber-owl.net/ontology/WBBT", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://registry.identifiers.org/registry/miriam.collection", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.d31795", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.uniprot.org/database/DB-0060", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@value": "civic.did" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna", + "@id": "https://registry.bio2kg.org/resource/hovergen", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/omim.ps", + "@id": "https://bioregistry.io/registry/scop.sid", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome.", - "http://purl.org/dc/terms/isPartOf": [ - { - "@id": "https://bioregistry.io/registry/omim" - }, - { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - } - ], + "http://purl.org/dc/terms/description": " A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "OMIM Phenotypic Series" + "@value": "Structural Classification of Protein - Stable Domain Identifier" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS" + "@id": "http://edamontology.org/data_1039" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.omim.org/phenotypicSeriesTitles/all" + "@id": "https://scop.berkeley.edu" }, - "https://bioregistry.io/schema/#0000005": "214100", - "https://bioregistry.io/schema/#0000006": "https://omim.org/MIM:PS$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "d4akea1", + "https://bioregistry.io/schema/#0000006": "http://scop.berkeley.edu/sid=$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1780-5230" + "@id": "https://orcid.org/0000-0002-5153-9079" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "OMIMPS" - }, - { - "@value": "mim.ps" - }, - { - "@value": "MIMPS" - }, - { - "@value": "PS" - } - ], - "https://bioregistry.io/schema/#0000024": "https://omim.org/MIM:PS", + "https://bioregistry.io/schema/#0000024": "http://scop.berkeley.edu/sid=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://omim.org/MIM:PS214100" + "@id": "http://scop.berkeley.edu/sid=d4akea1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "omim.ps" + "@value": "scop.sid" } }, { - "@id": "https://bioregistry.io/registry/icldb", + "@id": "https://orcid.org/0000-0002-9765-2990", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ryan Brinkman" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "rbrinkman@bccrc.ca" + } + }, + { + "@id": "http://aber-owl.net/ontology/RGD", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/diseasesdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)", + "http://purl.org/dc/terms/description": "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Insect Cell Line Database" + "@value": "Diseases Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ICLDB" + "@id": "http://www.wikidata.org/entity/P557" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://entomology.ca.uky.edu/aginsectcellsdatabase" + "@id": "http://www.diseasesdatabase.com/" }, - "https://bioregistry.io/schema/#0000005": "64ba", - "https://bioregistry.io/schema/#0000006": "https://entomology.ca.uky.edu/content/$1", + "https://bioregistry.io/schema/#0000005": "1784", + "https://bioregistry.io/schema/#0000006": "https://www.diseasesdatabase.com/ddb$1.htm", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2212-4771" - }, - "https://bioregistry.io/schema/#0000024": "https://entomology.ca.uky.edu/content/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/diseasesdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://entomology.ca.uky.edu/content/64ba" + "@id": "https://www.diseasesdatabase.com/ddb1784.htm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icldb" + "@value": "diseasesdb" } }, { - "@id": "https://bioregistry.io/registry/unite", + "@id": "https://registry.bio2kg.org/resource/swo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/molmedb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa.", + "http://purl.org/dc/terms/description": "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/BerkaLab/MolMeDB" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular database for the identification of fungi" + "@value": "MolMeDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://edamontology.org/data_2390" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/unite" - }, - { - "@id": "https://registry.identifiers.org/registry/unite" - }, - { - "@id": "https://registry.bio2kg.org/resource/unite" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UNITE" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/UNITE" - }, - { - "@id": "https://www.re3data.org/repository/r3d100011316" + "@id": "https://fairsharing.org/FAIRsharing.CWzk3C" }, { - "@id": "https://fairsharing.org/FAIRsharing.cnwx8c" + "@id": "https://registry.identifiers.org/registry/molmedb" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "molecular physical chemistry" }, { - "@value": "metagenomics" + "@value": "chemistry" }, { - "@value": "bioinformatics" + "@value": "molecular biology" }, { - "@value": "ecology" + "@value": "molecular dynamics" }, { - "@value": "dna" + "@value": "biochemistry" }, { - "@value": "taxonomy" + "@value": "computational chemistry" }, { - "@value": "biodiversity" + "@value": "molecular chemistry" + }, + { + "@value": "cheminformatics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://unite.ut.ee/" + "@id": "http://www.upol.cz/en/" }, - "https://bioregistry.io/schema/#0000005": "UDB000691", - "https://bioregistry.io/schema/#0000006": "http://unite.ut.ee/bl_forw.php?nimi=$1", - "https://bioregistry.io/schema/#0000008": "^UDB\\d{6}$", + "https://bioregistry.io/schema/#0000005": "MM00040", + "https://bioregistry.io/schema/#0000006": "https://molmedb.upol.cz/mol/$1", + "https://bioregistry.io/schema/#0000008": "^[m,M]{2}[0-9]{5}[0-9]*$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-5171-1668" + "@id": "https://orcid.org/0000-0001-9472-2589" }, - "https://bioregistry.io/schema/#0000024": "http://unite.ut.ee/bl_forw.php?nimi=", + "https://bioregistry.io/schema/#0000024": "https://molmedb.upol.cz/mol/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://unite.ut.ee/bl_forw.php?nimi=UDB000691" + "@id": "https://molmedb.upol.cz/mol/MM00040" }, "https://bioregistry.io/schema/#0000029": { - "@value": "unite" + "@value": "molmedb" } }, { - "@id": "https://registry.bio2kg.org/resource/doi", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gabi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.uniprot.org/database/DB-0016", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/dc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.229", + "@id": "https://bioregistry.io/registry/gateway", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Health Data Research Innovation Gateway" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/gateway" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.hdruk.ac.uk" + }, + "https://bioregistry.io/schema/#0000005": "fd8d0743-344a-4758-bb97-f8ad84a37357", + "https://bioregistry.io/schema/#0000006": "https://web.www.healthdatagateway.org/dataset/$1", + "https://bioregistry.io/schema/#0000008": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://web.www.healthdatagateway.org/dataset/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://web.www.healthdatagateway.org/dataset/fd8d0743-344a-4758-bb97-f8ad84a37357" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "gateway" } }, { - "@id": "https://www.uniprot.org/database/DB-0053", + "@id": "http://www.ontobee.org/ontology/TADS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PO", + "@id": "https://registry.bio2kg.org/resource/biopixie", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bartoc.org/en/node/305", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIOPORTAL", + "@id": "https://bioportal.bioontology.org/ontologies/ICF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MOLBASE", + "@id": "https://registry.identifiers.org/registry/interpro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P5683", + "@id": "http://aber-owl.net/ontology/MONDO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/GRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://www.wikidata.org/entity/P11931", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/chebi", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/rex" - }, - { - "@id": "https://bioregistry.io/registry/fix" - } - ], + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dbd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/ebi-chebi/ChEBI" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Chemical Entities of Biological Interest" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P683" - }, - { - "@id": "https://www.obofoundry.org/ontology/chebi" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/chebi" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ChEBI" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHEBI" - }, - { - "@id": "http://aber-owl.net/ontology/CHEBI" - }, - { - "@id": "https://registry.bio2kg.org/resource/chebi" - }, - { - "@id": "https://bartoc.org/en/node/558" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/chebi" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/CHEBI" - }, - { - "@id": "http://www.ontobee.org/ontology/CHEBI" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012626" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/CHEBI" - }, - { - "@id": "https://registry.identifiers.org/registry/chebi" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.62qk8w" - }, - { - "@id": "http://edamontology.org/data_1174" - }, - { - "@id": "https://semanticscience.org/resource/CHEMINF_000407" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "chemical" - }, - { - "@value": "biochemistry" - }, - { - "@value": "chemistry" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/chebi" - }, - "https://bioregistry.io/schema/#0000005": "24867", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/CHEBI_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/chebi.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/ecocore" - }, - { - "@id": "https://bioregistry.io/registry/mco" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/ecto" - }, - { - "@id": "https://bioregistry.io/registry/proco" - }, - { - "@id": "https://bioregistry.io/registry/maxo" - }, - { - "@id": "https://bioregistry.io/registry/pcl" - }, - { - "@id": "https://bioregistry.io/registry/ons" - }, - { - "@id": "https://bioregistry.io/registry/foodon" - }, - { - "@id": "https://bioregistry.io/registry/genepio" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/fobi" - }, - { - "@id": "https://bioregistry.io/registry/chiro" - }, - { - "@id": "https://bioregistry.io/registry/cdno" - }, - { - "@id": "https://bioregistry.io/registry/xpo" - }, - { - "@id": "https://bioregistry.io/registry/scdo" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-8123-5351" - }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "CHEBIID" - }, - { - "@value": "ChEBI" - }, - { - "@value": "CHEBI" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/CHEBI_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/CHEBI_24867" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "chebi" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/mmp.db", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MarDB includes all sequenced marine microbial genomes regardless of level of completeness.", + "@id": "https://bioportal.bioontology.org/ontologies/ZEA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MarDB" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.db" - }, - { - "@id": "https://registry.identifiers.org/registry/mmp.db" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.DB" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://mmp.sfb.uit.no/databases/mardb/" - }, - "https://bioregistry.io/schema/#0000005": "MMP02954345.1", - "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/mardb/#/records/$1", - "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/mardb/#/records/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://mmp.sfb.uit.no/databases/mardb/#/records/MMP02954345.1" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "mmp.db" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/lbctr", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ensemblglossary", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Lebanon Clinical Trials Registry" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://lbctr.moph.gov.lb/" - }, - "https://bioregistry.io/schema/#0000005": "LBCTR2023015204", - "https://bioregistry.io/schema/#0000008": "^LBCTR\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "lbctr" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://orcid.org/0000-0001-6261-7370", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Enrique Blanco" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "enrique.blanco@crg.eu" + "@id": "https://registry.identifiers.org/registry/isni", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/did", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/xao", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/intact", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.identifiers.org/registry/beetlebase", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://orcid.org/0000-0002-8374-1941", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Miguel A. Fortuna" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://registry.identifiers.org/registry/mo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100010804", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000003", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A type for entries in the Bioregistry's collections" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "fortuna@ebd.csic.es" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Collection" } }, { - "@id": "https://bioregistry.io/registry/vfdb.genus", + "@id": "https://registry.bio2kg.org/resource/sabiork.ec", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/nembase", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.", + "http://purl.org/dc/terms/description": "NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VFDB Genus" + "@value": "Nematode & Neglected Genomics" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/nembase" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/VFDB.GENUS" + "@value": "dna" }, { - "@id": "https://registry.identifiers.org/registry/vfdb.genus" + "@value": "protein" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/vfdb.genus" + "@value": "rna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.mgc.ac.cn/VFs/" + "@id": "http://www.nematodes.org" }, - "https://bioregistry.io/schema/#0000005": "Chlamydia", - "https://bioregistry.io/schema/#0000006": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=", + "https://bioregistry.io/schema/#0000005": "NBC00001", + "https://bioregistry.io/schema/#0000006": "http://www.nematodes.org/nembase4/cluster.php?cluster=$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "http://www.nematodes.org/nembase4/cluster.php?cluster=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=Chlamydia" + "@id": "http://www.nematodes.org/nembase4/cluster.php?cluster=NBC00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vfdb.genus" + "@value": "nembase" } }, { - "@id": "https://registry.identifiers.org/registry/peroxibase", + "@id": "http://www.ontobee.org/ontology/MPATH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.re3data.org/repository/r3d100010891", + "@id": "https://bioregistry.io/metaregistry/biocontext/rdfs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.identifiers.org/registry/phylomedb", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/CTD.GENE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/CBA", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sheepqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogsf", + "@id": "https://registry.identifiers.org/registry/neurovault.image", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://cropontology.org/ontology/CO_320", + "@id": "https://bioregistry.io/registry/rapdb.locus", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RAP-DB Locus" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/rapdb.locus" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://rapdb.dna.affrc.go.jp/" + }, + "https://bioregistry.io/schema/#0000005": "Os01g0883800", + "https://bioregistry.io/schema/#0000006": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1", + "https://bioregistry.io/schema/#0000008": "^Os\\S+g\\d{7}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000023": { + "@value": "irgsp" + }, + "https://bioregistry.io/schema/#0000024": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=Os01g0883800" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "rapdb.locus" } }, { - "@id": "https://registry.identifiers.org/registry/kegg.compound", + "@id": "https://registry.identifiers.org/registry/dashr.expression", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ac", + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/geo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "https://bioregistry.io/registry/tair.locus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities.", + "http://purl.org/dc/terms/description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Activity Streams" + "@value": "The Arabidopsis Information Resource" }, - "http://www.w3.org/ns/dcat#keyword": [ + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "semantic web" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.locus" }, { - "@value": "social media" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAIR.LOCUS" + }, + { + "@id": "https://registry.bio2kg.org/resource/tair.locus" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/TAIR" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TAIR" + }, + { + "@id": "https://registry.identifiers.org/registry/tair.locus" + } + ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genome" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://arabidopsis.org/index.jsp" + }, + "https://bioregistry.io/schema/#0000005": "2200950", + "https://bioregistry.io/schema/#0000006": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:2200950" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "tair.locus" + } + }, + { + "@id": "https://bioregistry.io/registry/co_326", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Draft version", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Coconut ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://cropontology.org/ontology/CO_326" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_326" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.w3.org/ns/activitystreams" + "@id": "https://cropontology.org/ontology/CO_326/Coconut" + }, + "https://bioregistry.io/schema/#0000005": "0000254", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_326:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_326/Coconut/owl" }, - "https://bioregistry.io/schema/#0000005": "Add", - "https://bioregistry.io/schema/#0000006": "http://www.w3.org/ns/activitystreams#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.w3.org/ns/activitystreams#", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_326:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.w3.org/ns/activitystreams#Add" + "@id": "https://cropontology.org/rdf/CO_326:0000254" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ac" + "@value": "co_326" } }, { - "@id": "https://registry.bio2kg.org/resource/transportdb", + "@id": "https://bioregistry.io/metaregistry/biocontext/IAO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/eu89h", + "@id": "https://bioportal.bioontology.org/ontologies/MDM", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/apid.interactions", + "@id": "http://aber-owl.net/ontology/EXO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://registry.identifiers.org/registry/uniprot", + "@id": "https://registry.identifiers.org/registry/mpid", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/aeo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/REBASE", + "@id": "https://bioregistry.io/metaregistry/biocontext/PHOSPHOPOINT.PROTEIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/massive", + "@id": "https://bioregistry.io/registry/sio", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.", + "http://purl.org/dc/terms/description": "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://ccms-ucsd.github.io/MassIVEDocumentation" + "@id": "https://github.com/micheldumontier/semanticscience" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MassIVE" + "@value": "Semanticscience Integrated Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/MASSIVE" + "@id": "https://bioregistry.io/metaregistry/biocontext/SIO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/massive" + "@id": "https://fairsharing.org/FAIRsharing.dpkb5f" }, { - "@id": "https://www.uniprot.org/database/DB-0241" + "@id": "https://registry.identifiers.org/registry/sio" }, { - "@id": "https://fairsharing.org/FAIRsharing.LYsiMd" + "@id": "https://bioportal.bioontology.org/ontologies/SIO" }, { - "@id": "https://registry.identifiers.org/registry/massive" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://aber-owl.net/ontology/SIO" + }, { - "@value": "phenomics" + "@id": "http://www.ontobee.org/ontology/SIO" }, { - "@value": "functional genomics" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio" }, { - "@value": "proteomics" + "@id": "http://agroportal.lirmm.fr/ontologies/SIO" }, { - "@value": "omics" + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/SIO" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@value": "metaproteomics" + "@value": "natural science" }, { - "@value": "metabolomics" + "@value": "subject agnostic" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp" + "@id": "https://github.com/micheldumontier/semanticscience" + }, + "https://bioregistry.io/schema/#0000005": "000912", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=$1", + "https://bioregistry.io/schema/#0000008": "^\\d{6}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://semanticscience.org/ontology/sio/v1.59/sio-release.owl" }, - "https://bioregistry.io/schema/#0000005": "MSV000082131", - "https://bioregistry.io/schema/#0000006": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1", - "https://bioregistry.io/schema/#0000008": "^MSV\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7647-6097" + "@id": "https://orcid.org/0000-0003-4727-9435" }, - "https://bioregistry.io/schema/#0000024": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000082131" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=000912" }, "https://bioregistry.io/schema/#0000029": { - "@value": "massive" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/AGRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "sio" } }, { - "@id": "https://bioregistry.io/registry/gorel", + "@id": "https://bioregistry.io/registry/jcsd", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO.", + "http://purl.org/dc/terms/description": "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "GO Relations" + "@value": "Japan Chemical Substance Dictionary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/GOREL" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCSD" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GOREL" + "@id": "https://registry.bio2kg.org/resource/jcsd" + }, + { + "@id": "https://registry.identifiers.org/registry/jcsd" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcsd" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "chemical" + }, + { + "@value": "structure" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://geneontology.org/docs/ontology-relations/" - }, - "https://bioregistry.io/schema/#0000005": "0002005", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GOREL_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "ftp://ftp.geneontology.org/pub/go/ontology/extensions/gorel.owl" + "@id": "http://jglobal.jst.go.jp/en/" }, + "https://bioregistry.io/schema/#0000005": "J55.713G", + "https://bioregistry.io/schema/#0000006": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1", + "https://bioregistry.io/schema/#0000008": "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GOREL_", + "https://bioregistry.io/schema/#0000024": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GOREL_0002005" + "@id": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=J55.713G" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gorel" + "@value": "jcsd" } }, { - "@id": "https://registry.identifiers.org/registry/dlxc", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/fobi", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP", + "@id": "https://registry.bio2kg.org/resource/vbase2", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/SBO", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/omiabis", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://bioregistry.io/registry/genepio", + "@id": "https://bioregistry.io/registry/obi", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.", + "http://purl.org/dc/terms/description": "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/GenEpiO/genepio" + "@id": "https://github.com/obi-ontology/obi" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genomic Epidemiology Ontology" + "@value": "Ontology for Biomedical Investigations" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/GENEPIO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obi" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/genepio" + "@id": "http://www.ontobee.org/ontology/OBI" }, { - "@id": "https://www.obofoundry.org/ontology/genepio" + "@id": "https://fairsharing.org/FAIRsharing.284e1z" }, { - "@id": "http://aber-owl.net/ontology/GENEPIO" + "@id": "https://registry.identifiers.org/registry/obi" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GENEPIO" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/obi" }, { - "@id": "https://fairsharing.org/FAIRsharing.y1mmbv" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBI" + }, + { + "@id": "http://aber-owl.net/ontology/OBI" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/OBI" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI" + }, + { + "@id": "https://www.obofoundry.org/ontology/obi" + }, + { + "@id": "https://registry.bio2kg.org/resource/obi" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genomics" + "@value": "functional genomics" }, { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "biomedical science" }, { - "@value": "epidemiology" + "@value": "life science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://genepio.org/" + "@id": "http://obi-ontology.org" }, - "https://bioregistry.io/schema/#0000005": "0001885", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GENEPIO_$1", + "https://bioregistry.io/schema/#0000005": "0400109", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBI_$1", "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/genepio.owl" + "@id": "http://purl.obolibrary.org/obo/obi.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000018": [ { - "@id": "https://bioregistry.io/registry/uberon" + "@id": "https://bioregistry.io/registry/labo" }, { - "@id": "https://bioregistry.io/registry/ncbitaxon" + "@id": "https://bioregistry.io/registry/hso" }, { - "@id": "https://bioregistry.io/registry/po" + "@id": "https://bioregistry.io/registry/rbo" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://bioregistry.io/registry/mco" }, { - "@id": "https://bioregistry.io/registry/chebi" - } - ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-8844-9165" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GENEPIO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GENEPIO_0001885" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "genepio" - } - }, - { - "@id": "https://registry.identifiers.org/registry/unipathway.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/biocyc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/registry/metacyc.reaction", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "MetaCyc Reaction" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "https://bioregistry.io/registry/foodon" + }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/metacyc.reaction" + "@id": "https://bioregistry.io/registry/one" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/METACYC.REACTION" + "@id": "https://bioregistry.io/registry/proco" }, { - "@id": "https://registry.identifiers.org/registry/metacyc.reaction" + "@id": "https://bioregistry.io/registry/agro" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/metacyc.reaction" + "@id": "https://bioregistry.io/registry/ons" + }, + { + "@id": "https://bioregistry.io/registry/scdo" + }, + { + "@id": "https://bioregistry.io/registry/maxo" } ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://metacyc.org" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8457-6693" }, - "https://bioregistry.io/schema/#0000005": "RXN-14904", - "https://bioregistry.io/schema/#0000006": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1", - "https://bioregistry.io/schema/#0000008": "^[A-Za-z0-9+_.%-:]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBI_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=RXN-14904" + "@id": "http://purl.obolibrary.org/obo/OBI_0400109" }, "https://bioregistry.io/schema/#0000029": { - "@value": "metacyc.reaction" + "@value": "obi" } }, { - "@id": "https://registry.identifiers.org/registry/ocid", + "@id": "https://www.obofoundry.org/ontology/mop", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UBERON", + "@id": "http://edamontology.org/data_2610", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sisu", + "@id": "https://fairsharing.org/FAIRsharing.zchb68", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/corum", + "@id": "https://fairsharing.org/FAIRsharing.M6Ruz3", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://registry.bio2kg.org/resource/mtbd", + "@id": "https://bartoc.org/en/node/1897", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/bartoc" } }, { - "@id": "https://registry.identifiers.org/registry/ensembl.protist", + "@id": "https://registry.identifiers.org/registry/mi", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.hw3bh2", + "@id": "https://bioregistry.io/registry/hssp", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Database of homology-derived secondary structure of proteins" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://registry.bio2kg.org/resource/hssp" + }, + { + "@id": "https://registry.identifiers.org/registry/hssp" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HSSP" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HSSP" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hssp" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "sequence" + }, + { + "@value": "clustering" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://swift.cmbi.kun.nl/swift/hssp/" + }, + "https://bioregistry.io/schema/#0000005": "102l", + "https://bioregistry.io/schema/#0000006": "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2", + "https://bioregistry.io/schema/#0000008": "^\\w{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/hssp:", + "https://bioregistry.io/schema/#0000027": { + "@id": "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/102l.hssp.bz2" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "hssp" } }, { - "@id": "https://orcid.org/0000-0003-0338-3070", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jennifer L Harrow" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "jla1@sanger.ac.uk" + "@id": "https://bioregistry.io/metaregistry/biocontext/ORIDB.SCHIZO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/vsmo", + "@id": "https://bioregistry.io/registry/cnrs", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "an ontology for vector surveillance and management, focusing on arthropod vectors and vector-borne pathogens with relevance to humans or domestic animals, and with special emphasis on content to support operational activities through inclusion in databases, data management systems, or decision support systems.", + "http://purl.org/dc/terms/description": "identifier for an academic research group issued by the CNRS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ontology for vector surveillance and management" + "@value": "French National Center for Scientific Research - Research Group Identifier" }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "http://www.wikidata.org/entity/P4550" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://code.google.com/archive/p/vector-surveillance-and-management-ontology/" - }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VSMO_$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/cthoyt/vsmo/main/vsmo.owl" + "@id": "https://annuaire.cnrs.fr" }, + "https://bioregistry.io/schema/#0000005": "UMR7315", + "https://bioregistry.io/schema/#0000006": "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u", + "https://bioregistry.io/schema/#0000008": "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY)\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VSMO_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cnrs:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/VSMO_0000000" + "@id": "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=UMR7315&p_origine_appel=u" }, "https://bioregistry.io/schema/#0000029": { - "@value": "vsmo" + "@value": "cnrs" } }, { - "@id": "https://orcid.org/0000-0002-1780-5230", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Ada Hamosh" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "ahamosh@jhmi.edu" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.4m97ah", + "@id": "http://www.wikidata.org/entity/P683", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ERV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://orcid.org/0000-0002-3528-5267", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sofia Robb" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "smr@stowers.org" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wormpep", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/merops.family", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/collection/0000007", - "@type": "https://bioregistry.io/schema/#0000003", - "http://purl.org/dc/elements/1.1/creator": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://bioregistry.io/registry/mpath", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://purl.org/dc/elements/1.1/description": { - "@value": "Prefixes useful in annotating documentation provenance." + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/PaulNSchofield/mpath" }, - "http://purl.org/dc/terms/hasPart": [ + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mouse pathology ontology" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/pubmed" + "@id": "https://registry.bio2kg.org/resource/mpath" }, { - "@id": "https://bioregistry.io/registry/pmc" + "@id": "http://aber-owl.net/ontology/MPATH" }, { - "@id": "https://bioregistry.io/registry/arxiv" + "@id": "https://www.obofoundry.org/ontology/mpath" }, { - "@id": "https://bioregistry.io/registry/doi" + "@id": "https://bioportal.bioontology.org/ontologies/MPATH" + }, + { + "@id": "http://www.ontobee.org/ontology/MPATH" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.3wbgm0" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/mpath" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MPATH" } ], - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Publication Provenance Prefixes" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_334", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/ico", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://bioregistry.io/registry/aop", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "International repository of Adverse Outcome Pathways.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "AOPWiki" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/AOP" + "@value": "phenotype" }, { - "@id": "https://registry.identifiers.org/registry/aop" + "@value": "biomedical science" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/aop" + "@value": "mouse" + }, + { + "@value": "ontology" + }, + { + "@value": "anatomy" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://aopwiki.org/" + "@id": "http://www.pathbase.net" }, - "https://bioregistry.io/schema/#0000005": "98", - "https://bioregistry.io/schema/#0000006": "https://aopwiki.org/aops/$1", + "https://bioregistry.io/schema/#0000005": "728", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MPATH_$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/mpath.owl" + }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://aopwiki.org/aops/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-5111-7263" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "MPATH" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MPATH_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://aopwiki.org/aops/98" + "@id": "http://purl.obolibrary.org/obo/MPATH_728" }, "https://bioregistry.io/schema/#0000029": { - "@value": "aop" + "@value": "mpath" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/FPLX", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sabiork.ec", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/apollo_sv", + "@id": "http://www.ontobee.org/ontology/FOODON", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/DUO", + "@id": "https://bioportal.bioontology.org/ontologies/PATO", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "http://www.ontobee.org/ontology/OGSF", + "@id": "https://fairsharing.org/FAIRsharing.9y8f0n", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/jstor", + "@id": "https://bioregistry.io/registry/xml", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration.", + "http://purl.org/dc/terms/description": "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Digital archive of scholarly articles" + "@value": "Extensible Markup Language" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/JSTOR" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/JSTOR" - }, - { - "@id": "https://registry.identifiers.org/registry/jstor" + "@id": "https://bioregistry.io/metaregistry/biocontext/xml" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jstor" + "@id": "https://fairsharing.org/FAIRsharing.b5cc91" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "subject agnostic" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.jstor.org/" + "@id": "https://www.w3.org/TR/xml/" }, - "https://bioregistry.io/schema/#0000005": "3075966", - "https://bioregistry.io/schema/#0000006": "http://www.jstor.org/stable/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "lang", + "https://bioregistry.io/schema/#0000006": "http://www.w3.org/XML/1998/namespace#$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.jstor.org/stable/", + "https://bioregistry.io/schema/#0000024": "http://www.w3.org/XML/1998/namespace#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.jstor.org/stable/3075966" + "@id": "http://www.w3.org/XML/1998/namespace#lang" }, "https://bioregistry.io/schema/#0000029": { - "@value": "jstor" + "@value": "xml" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/mirbase", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hinv.locus", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://aber-owl.net/ontology/DDANAT", + "@id": "https://fairsharing.org/FAIRsharing.dstf7h", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/MmusDv", + "@id": "https://bioregistry.io/registry/bcrj", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Cell line collections (Providers)", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Banco de Celulas do Rio de Janeiro" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/BCRJ" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bcrj.org.br/pesquisa/" + }, + "https://bioregistry.io/schema/#0000005": "0278", + "https://bioregistry.io/schema/#0000006": "http://bcrj.org.br/celula/$1", + "https://bioregistry.io/schema/#0000008": "^\\d{4}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "http://bcrj.org.br/celula/", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://bcrj.org.br/celula/0278" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bcrj" } }, { - "@id": "http://www.wikidata.org/entity/P594", + "@id": "https://orcid.org/0000-0001-5886-7860", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": " Hendrik Borgelt" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "hendrik.borgelt@tu-dortmund.de" + } + }, + { + "@id": "https://registry.identifiers.org/registry/bitbucket", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://fairsharing.org/FAIRsharing.6L6MjA", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pocketome", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/dictybase.gene", + "@id": "https://www.obofoundry.org/ontology/cteno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { @@ -150053,16 +150229,16 @@ }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.0pUMYW" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GRID" + "@id": "https://registry.identifiers.org/registry/grid" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/grid" + "@id": "https://bioregistry.io/metaregistry/biocontext/GRID" }, { - "@id": "https://registry.identifiers.org/registry/grid" + "@id": "https://fairsharing.org/FAIRsharing.0pUMYW" } ], "http://www.w3.org/ns/dcat#keyword": { @@ -150084,289 +150260,289 @@ } }, { - "@id": "https://www.obofoundry.org/ontology/omp", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bcgo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/OCLC", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000008", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The pattern for identifiers in the given resource" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has local unique identifier pattern" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ + { + "@id": "http://vocabularies.bridgedb.org/ops#hasRegexPattern" + }, + { + "@id": "http://identifiers.org/idot/identifierPattern" + }, + { + "@id": "http://www.wikidata.org/entity/P1793" + } + ] + }, + { + "@id": "http://www.wikidata.org/entity/P234", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "http://edamontology.org/data_2639", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/edam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/zfa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.c9psgb", + "@id": "https://registry.bio2kg.org/resource/tgd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/MPATH", + "@id": "http://www.ontobee.org/ontology/HsapDv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://www.uniprot.org/database/DB-0254", + "@id": "https://registry.identifiers.org/registry/unite", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurovault.collection", + "@id": "http://www.wikidata.org/entity/P2115", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/registry/dandi", + "@id": "https://bioregistry.io/registry/tahh", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/dandi/dandiarchive" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Distributed Archives for Neurophysiology Data Integration" + "@value": "Terminology of Anatomy of Human Histology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.f2c119" + "@id": "https://bioregistry.io/metaregistry/biocontext/TAHH" }, { - "@id": "https://www.re3data.org/repository/r3d100013638" + "@id": "https://www.obofoundry.org/ontology/tahh" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" }, { - "@id": "https://registry.identifiers.org/registry/dandi" + "@value": "obo" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "neurophysiology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://dandiarchive.org/" - }, - "https://bioregistry.io/schema/#0000005": "000017", - "https://bioregistry.io/schema/#0000006": "https://dandiarchive.org/dandiset/$1", - "https://bioregistry.io/schema/#0000008": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/TAHH_$1", + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-3456-2493" - }, - "https://bioregistry.io/schema/#0000024": "https://dandiarchive.org/dandiset/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://dandiarchive.org/dandiset/000017" + "@id": "_:Nbd3b87c19aed4ac69586246a536ac439" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/TAHH_", "https://bioregistry.io/schema/#0000029": { - "@value": "dandi" + "@value": "tahh" } }, { - "@id": "https://www.obofoundry.org/ontology/ddpheno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "_:Nbd3b87c19aed4ac69586246a536ac439", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Pierre Sprumont" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "pierre.sprumont@unifr.ch" } }, { - "@id": "https://bioregistry.io/registry/csa", + "@id": "https://bioregistry.io/registry/co_321", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme.", + "http://purl.org/dc/terms/description": "July 2018", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/bioversity/Crop-Ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Catalytic Site Atlas" + "@value": "Wheat ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/CSA" - }, - { - "@id": "https://registry.identifiers.org/registry/csa" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_321" }, { - "@id": "https://registry.bio2kg.org/resource/csa" + "@id": "https://cropontology.org/ontology/CO_321" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/csa" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_321" }, { - "@id": "https://fairsharing.org/FAIRsharing.2ajtcf" + "@id": "https://fairsharing.org/FAIRsharing.czzmpg" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "structure" + "@value": "ontology" }, { - "@value": "enzyme" + "@value": "life science" }, { - "@value": "life science" + "@value": "agriculture" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/" + "@id": "https://cropontology.org/ontology/CO_321/Wheat" + }, + "https://bioregistry.io/schema/#0000005": "0000449", + "https://bioregistry.io/schema/#0000006": "https://cropontology.org/rdf/CO_321:$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://cropontology.org/ontology/CO_321/Wheat/owl" }, - "https://bioregistry.io/schema/#0000005": "1a05", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1", - "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7532-1269" + "@id": "https://orcid.org/0000-0002-9399-8003" }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=", + "https://bioregistry.io/schema/#0000024": "https://cropontology.org/rdf/CO_321:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=1a05" + "@id": "https://cropontology.org/rdf/CO_321:0000449" }, "https://bioregistry.io/schema/#0000029": { - "@value": "csa" + "@value": "co_321" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/USPTO", + "@id": "https://bioregistry.io/metaregistry/biocontext/CDD", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/OPB", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/OMIM.PS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/virgen", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences.", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.GENES", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "VirGen" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.bio2kg.org/resource/virgen" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "genome" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinfo.ernet.in/virgen/virgen.html" - }, - "https://bioregistry.io/schema/#0000005": "AY321118", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000029": { - "@value": "virgen" + "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/inchi", + "@id": "https://bioregistry.io/metaregistry/biocontext/ORTHODB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/datacite", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.", + "@id": "https://bioportal.bioontology.org/ontologies/TTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/datacite" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "DataCite Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/DATACITE" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/DATACITE" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.c06f1e" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "ontology" - }, - { - "@value": "subject agnostic" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/datacite" - }, - "https://bioregistry.io/schema/#0000005": "AgentIdentifierScheme", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/datacite/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/DATACITE/2/datacite.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/datacite/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/datacite/AgentIdentifierScheme" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "datacite" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/psimi", + "@id": "https://bioregistry.io/metaregistry/biocontext/OBI", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/Xenbase", + "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.REF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://www.wikidata.org/entity/P3151", + "@id": "https://registry.identifiers.org/registry/biomodels.vocabulary", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/ehdaa2", + "@id": "https://fairsharing.org/FAIRsharing.sm90nh", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/dcterms", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://www.uniprot.org/database/DB-0258", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/uniprot" + } + }, + { + "@id": "https://bioregistry.io/registry/nmr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.", + "http://purl.org/dc/terms/description": "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human developmental anatomy, abstract" + "@value": "NMR-instrument specific component of metabolomics investigations" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/EHDAA2" + "@id": "https://registry.identifiers.org/registry/nmr" }, { - "@id": "https://www.obofoundry.org/ontology/ehdaa2" + "@id": "https://bioregistry.io/metaregistry/biocontext/NMR" }, { - "@id": "http://aber-owl.net/ontology/EHDAA2" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nmrcv" }, { - "@id": "https://fairsharing.org/FAIRsharing.7zxrs6" + "@id": "https://registry.bio2kg.org/resource/nmr" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ehdaa2" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nmr" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EHDAA2" + "@id": "http://aber-owl.net/ontology/NMR" }, { - "@id": "http://www.ontobee.org/ontology/EHDAA2" + "@id": "https://www.obofoundry.org/ontology/nmr" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/NMR" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -150374,1343 +150550,1178 @@ "@value": "obo" }, { - "@value": "ontology" - }, - { - "@value": "anatomy" + "@value": "owl" }, { - "@value": "biomedical science" + "@value": "nmr" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/obophenotype/human-developmental-anatomy-ontology" + "@id": "http://msi-ontology.sourceforge.net/" }, - "https://bioregistry.io/schema/#0000005": "0000000", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/EHDAA2_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000005": "1000003", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ehdaa2.owl" + "@id": "https://nmrml.org/cv/stable/nmrCV.owl" }, "https://bioregistry.io/schema/#0000012": true, - "https://bioregistry.io/schema/#0000017": [ + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8014-6648" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "nmrcv" + }, + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:1000003" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "nmr" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.kay31r", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/amoebadb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "AmoebaDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/caro" + "@id": "https://registry.identifiers.org/registry/amoebadb" }, { - "@id": "https://bioregistry.io/registry/cl" + "@id": "https://www.re3data.org/repository/r3d100012457" }, { - "@id": "https://bioregistry.io/registry/aeo" + "@id": "https://bioregistry.io/metaregistry/biocontext/AMOEBADB" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.swbypy" + }, + { + "@id": "https://registry.bio2kg.org/resource/amoebadb" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/amoebadb" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "_:N61e212a4682e4665ab4cc6dd850a2aa6" - }, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "EHDAA2_RETIRED" + "@value": "functional genomics" }, { - "@value": "RETIRED_EHDAA2" + "@value": "genomics" }, { - "@value": "HDAA2" + "@value": "model organism" } ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/EHDAA2_", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://amoebadb.org/amoeba/" + }, + "https://bioregistry.io/schema/#0000005": "EDI_244000", + "https://bioregistry.io/schema/#0000006": "https://amoebadb.org/amoeba/app/record/gene/$1", + "https://bioregistry.io/schema/#0000008": "^EDI_\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://amoebadb.org/amoeba/app/record/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://amoebadb.org/amoeba/app/record/gene/EDI_244000" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "ehdaa2" + "@value": "amoebadb" } }, { - "@id": "_:N61e212a4682e4665ab4cc6dd850a2aa6", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Jonathan Bard" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "J.Bard@ed.ac.uk" + "@id": "https://bioregistry.io/metaregistry/biocontext/MRO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/MFOMD", + "@id": "https://bioregistry.io/metaregistry/biocontext/CAPS", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.x56jsy", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UM-BBD_pathwayID", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ftamrc", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "http://www.ontobee.org/ontology/CLAO", + "@id": "https://bioportal.bioontology.org/ontologies/PORO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials", + "@id": "https://registry.identifiers.org/registry/clinvar.submission", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/MESH.2012", + "@id": "https://bioportal.bioontology.org/ontologies/ZP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://registry.bio2kg.org/resource/pmdb", + "@id": "http://agroportal.lirmm.fr/ontologies/LPT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/agroportal" } }, { - "@id": "http://edamontology.org/data_2645", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://www.re3data.org/repository/r3d100010846", + "@id": "https://www.obofoundry.org/ontology/gno", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.dq34p2", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hgnc", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://orcid.org/0000-0003-3162-7490", + "@id": "https://bioregistry.io/registry/pictar", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Wasila Dahdul" + "@value": "PicTar" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "wasila.dahdul@usd.edu" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://pictar.mdc-berlin.de/" + }, + "https://bioregistry.io/schema/#0000005": "hsa-let-7a", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000023": { + "@value": "pictar-vert" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pictar" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAXDB.PROTEIN", + "@id": "https://bioregistry.io/metaregistry/go/resolve/PIRSF", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.bio2kg.org/resource/treebase", + "@id": "https://fairsharing.org/FAIRsharing.2b04ae", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://registry.identifiers.org/registry/viralzone", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/tied", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD", + "@id": "http://www.ontobee.org/ontology/COLAO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TAXRANK", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/frbr", + "@id": "http://aber-owl.net/ontology/GENO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://registry.identifiers.org/registry/biosimulations", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ncro", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://bioregistry.io/registry/dashr", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/frbrer" - }, + "http://purl.org/dc/terms/description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/frbr" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Functional Requirements for Bibliographic Records" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.b34b43" + "@value": "Database of small human noncoding RNAs" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dashr" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/DASHR" + }, + { + "@id": "https://registry.identifiers.org/registry/dashr" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.ztvs34" + } + ], "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "life science" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/frbr" + "@id": "http://lisanwanglab.org/DASHR/" }, - "https://bioregistry.io/schema/#0000005": "Expression", - "https://bioregistry.io/schema/#0000006": "http://purl.org/vocab/frbr/core#$1", + "https://bioregistry.io/schema/#0000005": "hsa-mir-200a", + "https://bioregistry.io/schema/#0000006": "http://lisanwanglab.org/DASHR/entry/$1", + "https://bioregistry.io/schema/#0000008": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" + "@id": "https://orcid.org/0000-0002-3684-0031" }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/vocab/frbr/core#", + "https://bioregistry.io/schema/#0000024": "http://lisanwanglab.org/DASHR/entry/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/vocab/frbr/core#Expression" + "@id": "http://lisanwanglab.org/DASHR/entry/hsa-mir-200a" }, "https://bioregistry.io/schema/#0000029": { - "@value": "frbr" + "@value": "dashr" } }, { - "@id": "https://bioregistry.io/registry/fao.asfis", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)", + "@id": "https://bioregistry.io/metaregistry/biocontext/RGD.STRAIN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Aquatic Sciences and Fisheries Information System" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.fao.org/fishery/en/collection/asfis/en" - }, - "https://bioregistry.io/schema/#0000005": "20560", - "https://bioregistry.io/schema/#0000006": "https://www.fao.org/fishery/en/species/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "asfis" - }, - "https://bioregistry.io/schema/#0000024": "https://www.fao.org/fishery/en/species/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.fao.org/fishery/en/species/20560" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "fao.asfis" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/panther.node", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes.", - "http://purl.org/dc/terms/isPartOf": [ + "@id": "https://orcid.org/0000-0001-8910-9851", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Lynn Schriml" + }, + "http://xmlns.com/foaf/0.1/mbox": [ { - "@id": "https://bioregistry.io/registry/panther" + "@value": "lynn.schriml@gmail.com" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@value": "lschriml@som.umaryland.edu" } - ], + ] + }, + { + "@id": "https://bioregistry.io/registry/world2dpage", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "PANTHER Node" + "@value": "The World-2DPAGE database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/PANTHER.NODE" + "@id": "https://registry.bio2kg.org/resource/world2dpage" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/panther.node" + "@id": "https://www.uniprot.org/database/DB-0121" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "structure" }, { - "@id": "https://registry.identifiers.org/registry/panther.node" + "@value": "2d-page" + }, + { + "@value": "protein" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://pantree.org/" + "@id": "http://world-2dpage.expasy.org/repository/" }, - "https://bioregistry.io/schema/#0000005": "PTN000000026", - "https://bioregistry.io/schema/#0000006": "http://www.pantree.org/node/annotationNode.jsp?id=$1", - "https://bioregistry.io/schema/#0000008": "^PTN\\d{9}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.pantree.org/node/annotationNode.jsp?id=", + "https://bioregistry.io/schema/#0000005": "0020", + "https://bioregistry.io/schema/#0000006": "https://world-2dpage.expasy.org/repository/$1", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://world-2dpage.expasy.org/repository/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.pantree.org/node/annotationNode.jsp?id=PTN000000026" + "@id": "https://world-2dpage.expasy.org/repository/0020" }, "https://bioregistry.io/schema/#0000029": { - "@value": "panther.node" - } - }, - { - "@id": "http://edamontology.org/data_3103", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.ref", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mxx5rp", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@value": "world2dpage" } }, { - "@id": "https://bioregistry.io/registry/edam", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).", + "@id": "https://bioregistry.io/metaregistry/agroportal", + "@type": "https://bioregistry.io/schema/#0000002", + "http://purl.org/dc/elements/1.1/description": { + "@value": "A vocabulary and ontology repository for agronomy and related domains." + }, "http://purl.org/dc/terms/hasPart": [ { - "@id": "https://bioregistry.io/registry/edam.data" + "@id": "http://agroportal.lirmm.fr/ontologies/STY" }, { - "@id": "https://bioregistry.io/registry/edam.format" + "@id": "http://agroportal.lirmm.fr/ontologies/PPO" }, { - "@id": "https://bioregistry.io/registry/edam.topic" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_346" }, { - "@id": "https://bioregistry.io/registry/edam.operation" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/edamontology/edamontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EDAM Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://agroportal.lirmm.fr/ontologies/EO" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EDAM" + "@id": "http://agroportal.lirmm.fr/ontologies/CDNO" }, { - "@id": "http://aber-owl.net/ontology/EDAM" + "@id": "http://agroportal.lirmm.fr/ontologies/VT" }, { - "@id": "https://registry.bio2kg.org/resource/edam" + "@id": "http://agroportal.lirmm.fr/ontologies/FOODEX2" }, { - "@id": "https://fairsharing.org/FAIRsharing.a6r7zs" + "@id": "http://agroportal.lirmm.fr/ontologies/NCBITAXON" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/edam" + "@id": "http://agroportal.lirmm.fr/ontologies/EOL" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PCO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/EFO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_336" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/SDGIO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/AGRO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/FOODON" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/CO_357" }, { "@id": "http://agroportal.lirmm.fr/ontologies/EDAM" }, { - "@id": "http://www.ontobee.org/ontology/EDAM" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_360" }, { - "@id": "https://registry.identifiers.org/registry/edam" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_331" }, { - "@id": "https://bioportal.bioontology.org/ontologies/EDAM" + "@id": "http://agroportal.lirmm.fr/ontologies/RO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/edam" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://agroportal.lirmm.fr/ontologies/CO_325" + }, { - "@value": "obo" + "@id": "http://agroportal.lirmm.fr/ontologies/AGROVOC" }, { - "@value": "ontology" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_337" }, { - "@value": "subject agnostic" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_359" }, { - "@value": "life science" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_335" }, { - "@value": "bioinformatics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://edamontology.org" - }, - "https://bioregistry.io/schema/#0000005": "data_1664", - "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1", - "https://bioregistry.io/schema/#0000008": "^(data|topic|operation|format)\\_\\d{4}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/edamontology/edamontology/master/releases/EDAM.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1509-4981" - }, - "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/data_1664" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "edam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.3axym7", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ctd.disease", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/biomodels", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biomodels.db", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/ado", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Alzheimer's Disease Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://agroportal.lirmm.fr/ontologies/FALDO" + }, { - "@id": "https://fairsharing.org/FAIRsharing.ckd4rf" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_333" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ADO" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_339" }, { - "@id": "http://aber-owl.net/ontology/ADO" + "@id": "http://agroportal.lirmm.fr/ontologies/LBO" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ado" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_341" }, { - "@id": "http://www.ontobee.org/ontology/ADO" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_327" }, { - "@id": "https://www.obofoundry.org/ontology/ado" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://agroportal.lirmm.fr/ontologies/GO" + }, { - "@value": "ontology" + "@id": "http://agroportal.lirmm.fr/ontologies/TO" }, { - "@value": "health science" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_350" }, { - "@value": "obo" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/Fraunhofer-SCAI-Applied-Semantics/ADO" - }, - "https://bioregistry.io/schema/#0000005": "0000001", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ADO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ado.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": { - "@id": "https://bioregistry.io/registry/bfo" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9896-3531" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ADO_", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ADO_0000001" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "ado" - } - }, - { - "@id": "http://edamontology.org/data_1027", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/edam" - } - }, - { - "@id": "https://bioregistry.io/registry/sdbs", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Spectral Database for Organic Compounds" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://agroportal.lirmm.fr/ontologies/CO_322" + }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/SDBS" + "@id": "http://agroportal.lirmm.fr/ontologies/ATOL" }, { - "@id": "https://registry.identifiers.org/registry/sdbs" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_370" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sdbs" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/direct_frame_top.cgi" - }, - "https://bioregistry.io/schema/#0000005": "4544", - "https://bioregistry.io/schema/#0000006": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=4544" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "sdbs" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://orcid.org/0000-0003-3062-8192", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bernd Müller" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "bernd.mueller@zbmed.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/ctd.gene", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://orcid.org/0000-0003-0705-9809", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Rahuman Sheriff" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "sheriff@ebi.ac.uk" - } - }, - { - "@id": "http://www.ontobee.org/ontology/HANCESTRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "https://bioregistry.io/registry/uniprot", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information.", - "http://purl.org/dc/terms/hasPart": [ + "@id": "http://agroportal.lirmm.fr/ontologies/CO_366" + }, { - "@id": "https://bioregistry.io/registry/uniprot.tissue" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_358" }, { - "@id": "https://bioregistry.io/registry/uniprot.keyword" + "@id": "http://agroportal.lirmm.fr/ontologies/LPT" }, { - "@id": "https://bioregistry.io/registry/uniprot.chain" + "@id": "http://agroportal.lirmm.fr/ontologies/PECO" }, { - "@id": "https://bioregistry.io/registry/uniprot.ptm" + "@id": "http://agroportal.lirmm.fr/ontologies/CL" }, { - "@id": "https://bioregistry.io/registry/uniprot.location" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_320" }, { - "@id": "https://bioregistry.io/registry/uniprot.resource" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_340" }, { - "@id": "https://bioregistry.io/registry/uniprot.var" + "@id": "http://agroportal.lirmm.fr/ontologies/SIO" }, { - "@id": "https://bioregistry.io/registry/uniprot.proteome" + "@id": "http://agroportal.lirmm.fr/ontologies/ONS" }, { - "@id": "https://bioregistry.io/registry/uniprot.disease" + "@id": "http://agroportal.lirmm.fr/ontologies/FOBI" }, { - "@id": "https://bioregistry.io/registry/uniprot.isoform" - } - ], - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UniProt Protein" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "@id": "http://agroportal.lirmm.fr/ontologies/CO_348" + }, { - "@id": "https://registry.identifiers.org/registry/uniprot" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_323" }, { - "@id": "http://www.wikidata.org/entity/P352" + "@id": "http://agroportal.lirmm.fr/ontologies/CDAO" }, { - "@id": "http://edamontology.org/data_3021" + "@id": "http://agroportal.lirmm.fr/ontologies/SIREN" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/UniProtKB" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_334" }, { - "@id": "https://www.re3data.org/repository/r3d100011521" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_345" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/UniProtKB" + "@id": "http://agroportal.lirmm.fr/ontologies/OM" }, { - "@id": "https://registry.bio2kg.org/resource/uniprot" + "@id": "http://agroportal.lirmm.fr/ontologies/VARIO" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_330" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/UniProt" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_321" }, { - "@id": "https://fairsharing.org/FAIRsharing.wf28wm" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_343" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/uniprot" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_356" }, { - "@id": "http://aber-owl.net/ontology/UP" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_338" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/UniProtKB" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ + "@id": "http://agroportal.lirmm.fr/ontologies/PO" + }, { - "@value": "protein" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_347" }, { - "@value": "biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.uniprot.org" - }, - "https://bioregistry.io/schema/#0000005": "P0DP23", - "https://bioregistry.io/schema/#0000006": "https://purl.uniprot.org/uniprot/$1", - "https://bioregistry.io/schema/#0000008": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "@id": "http://agroportal.lirmm.fr/ontologies/GEMET" + }, { - "@value": "UniProtKB" + "@id": "http://agroportal.lirmm.fr/ontologies/BFO" }, { - "@value": "uniprot/swiss-prot" + "@id": "http://agroportal.lirmm.fr/ontologies/BCO" }, { - "@value": "UniProt" + "@id": "http://agroportal.lirmm.fr/ontologies/PR" }, { - "@value": "SwissProt" + "@id": "http://agroportal.lirmm.fr/ontologies/ENVO" }, { - "@value": "UP" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_365" }, { - "@value": "Uniprot ID" + "@id": "http://agroportal.lirmm.fr/ontologies/CO_324" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/FLOPO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/SO" + }, + { + "@id": "http://agroportal.lirmm.fr/ontologies/PATO" } ], - "https://bioregistry.io/schema/#0000024": "https://purl.uniprot.org/uniprot/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://purl.uniprot.org/uniprot/P0DP23" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "uniprot" - } - }, - { - "@id": "https://registry.identifiers.org/registry/atfdb.family", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/NGBO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://bioregistry.io/registry/pennsieve", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. ", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Pennsieve" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/ps" + "@value": "AgroPortal" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://discover.pennsieve.io" + "@value": "http://agroportal.lirmm.fr" }, - "https://bioregistry.io/schema/#0000005": "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a", - "https://bioregistry.io/schema/#0000006": "https://discover.pennsieve.io/package/$1", - "https://bioregistry.io/schema/#0000008": "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://discover.pennsieve.io/package/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://discover.pennsieve.io/package/N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a" + "https://bioregistry.io/schema/#0000005": { + "@value": "ENVO" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "pennsieve" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.5701h1", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "https://bioregistry.io/schema/#0000006": { + "@value": "http://agroportal.lirmm.fr/ontologies/$1" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-2404-1582" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.GCMS", + "@id": "https://bioregistry.io/metaregistry/biocontext/BEETLEBASE", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinvar.submission", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/ecogene", + "@id": "https://bioregistry.io/registry/tritrypdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites.", + "http://purl.org/dc/terms/description": "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Database of Escherichia coli Sequence and Function" + "@value": "TriTrypDB" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.3q3kvn" - }, - { - "@id": "https://registry.identifiers.org/registry/ecogene" + "@id": "https://bioregistry.io/metaregistry/go/resolve/TriTrypDB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ecogene" + "@id": "https://registry.identifiers.org/registry/tritrypdb" }, { - "@id": "https://registry.bio2kg.org/resource/ecogene" + "@id": "https://bioregistry.io/metaregistry/biocontext/TRITRYPDB" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EcoGene" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tritrypdb" }, { - "@id": "https://www.re3data.org/repository/r3d100010546" + "@id": "https://fairsharing.org/FAIRsharing.fs1z27" }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/EcoGene" + "@id": "https://www.re3data.org/repository/r3d100011479" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "genome" + "@value": "comparative genomics" }, { - "@value": "protein" + "@value": "infectious disease medicine" + }, + { + "@value": "genomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://ecogene.org/" + "@id": "http://tritrypdb.org/tritrypdb/" }, - "https://bioregistry.io/schema/#0000005": "EG10173", - "https://bioregistry.io/schema/#0000006": "http://www.ecogene.org/gene/$1", - "https://bioregistry.io/schema/#0000008": "^EG\\d+$", + "https://bioregistry.io/schema/#0000005": "Tb927.8.620", + "https://bioregistry.io/schema/#0000006": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^\\w+(\\.)?\\w+(\\.)?\\w+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.ecogene.org/gene/", + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-4446-6200" + }, + "https://bioregistry.io/schema/#0000024": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ecogene.org/gene/EG10173" + "@id": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=Tb927.8.620" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ecogene" + "@value": "tritrypdb" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/AISM", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/bila", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "http://edamontology.org/data_2390", + "@id": "http://edamontology.org/data_3274", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/edam" } }, { - "@id": "http://aber-owl.net/ontology/NCRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/cl", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "https://cropontology.org/ontology/CO_358", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cropoct" - } - }, - { - "@id": "https://bioregistry.io/registry/bigg.model", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.", + "@id": "https://bioregistry.io/metaregistry/biocontext/UMBBD.PATHWAY", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "BiGG Model" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.identifiers.org/registry/bigg.model" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/BIGG.MODEL" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bigg.model" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bigg.ucsd.edu/models" - }, - "https://bioregistry.io/schema/#0000005": "iECABU_c1320", - "https://bioregistry.io/schema/#0000006": "http://bigg.ucsd.edu/models/$1", - "https://bioregistry.io/schema/#0000008": "^[a-z_A-Z0-9]+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bigg.ucsd.edu/models/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://bigg.ucsd.edu/models/iECABU_c1320" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bigg.model" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://www.re3data.org/repository/r3d100010417", + "@id": "http://www.wikidata.org/entity/P492", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.bio2kg.org/resource/flybase", + "@id": "https://registry.bio2kg.org/resource/ddanat", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/schema/#0000025", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "An organization" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Organization" + "@id": "https://registry.identifiers.org/registry/t3db", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/nextprot", + "@id": "https://bioregistry.io/registry/vsao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases.", + "http://purl.org/dc/terms/description": "Vertebrate skeletal anatomy ontology.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "nextProt" + "@value": "Vertebrate Skeletal Anatomy Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/nextprot" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/vsao" }, { - "@id": "https://www.uniprot.org/database/DB-0161" + "@id": "https://www.obofoundry.org/ontology/vsao" }, { - "@id": "https://fairsharing.org/FAIRsharing.62evqh" + "@id": "https://bioregistry.io/metaregistry/biocontext/VSAO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NEXTPROT" + "@id": "http://aber-owl.net/ontology/VSAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nextprot" + "@id": "https://registry.bio2kg.org/resource/vao" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/VSAO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" + "@value": "ontology" }, { - "@value": "proteomics" + "@value": "anatomy" + }, + { + "@value": "obo" + }, + { + "@value": "vertebrate" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.nextprot.org/" + "@id": "https://www.nescent.org/phenoscape/Main_Page" }, - "https://bioregistry.io/schema/#0000005": "NX_O00165", - "https://bioregistry.io/schema/#0000006": "https://www.nextprot.org/db/entry/$1", - "https://bioregistry.io/schema/#0000008": "^NX_\\w+$", - "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000005": "VSAO_0000183", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/VSAO_$1", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/vsao.owl" + }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-7961-6091" + "@id": "https://orcid.org/0000-0003-3162-7490" }, "https://bioregistry.io/schema/#0000023": { - "@value": "NXP" - }, - "https://bioregistry.io/schema/#0000024": "https://www.nextprot.org/db/entry/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.nextprot.org/db/entry/NX_O00165" + "@value": "VSAO_RETIRED" }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/VSAO_", "https://bioregistry.io/schema/#0000029": { - "@value": "nextprot" + "@value": "vsao" } }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EDAM", + "@id": "https://fairsharing.org/FAIRsharing.27rndz", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/agroportal" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.re3data.org/repository/r3d100012388", + "@id": "https://bioregistry.io/metaregistry/biocontext/CEPH", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/kegg.genome", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/oryzabase.strain", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/tto", + "@id": "https://bioregistry.io/metaregistry/biocontext/PGDSO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/c4o", + "@id": "https://bioregistry.io/registry/conso", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date.", + "http://purl.org/dc/terms/description": "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/sparontologies/c4o" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Citation Counting and Context Characterisation Ontology" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://fairsharing.org/FAIRsharing.beb855" - }, - "http://www.w3.org/ns/dcat#keyword": { - "@value": "subject agnostic" + "@value": "Curation of Neurodegeneration Supporting Ontology" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "biology" + }, + { + "@value": "neurodegeneration" + }, + { + "@value": "ontology" + }, + { + "@value": "life science" + }, + { + "@value": "neuroscience" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.sparontologies.net/ontologies/c4o" + "@id": "https://pharmacome.github.io/conso/" }, - "https://bioregistry.io/schema/#0000005": "InTextReferencePointer", - "https://bioregistry.io/schema/#0000006": "http://purl.org/spar/c4o/$1", + "https://bioregistry.io/schema/#0000005": "CONSO00010", + "https://bioregistry.io/schema/#0000006": "https://pharmacome.github.io/conso/$1", + "https://bioregistry.io/schema/#0000008": "^CONSO\\d{5}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0530-4305" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.org/spar/c4o/", + "https://bioregistry.io/schema/#0000024": "https://pharmacome.github.io/conso/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.org/spar/c4o/InTextReferencePointer" + "@id": "https://pharmacome.github.io/conso/CONSO00010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "c4o" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/drsc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://www.obofoundry.org/ontology/rex", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" - } - }, - { - "@id": "http://www.ontobee.org/ontology/FLOPO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" - } - }, - { - "@id": "http://aber-owl.net/ontology/ERO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@value": "conso" } }, { - "@id": "https://bioregistry.io/registry/noncodev3", + "@id": "https://bioregistry.io/registry/rapdb.transcript", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4.", + "http://purl.org/dc/terms/description": "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NONCODE v3" + "@value": "Rice annotation Project database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/noncodev3" + "@id": "https://bioregistry.io/metaregistry/go/resolve/RAP-DB" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/noncodev3" + "@id": "https://registry.identifiers.org/registry/rapdb.transcript" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NONCODEV3" + "@id": "https://registry.bio2kg.org/resource/rapdb" }, { - "@id": "https://registry.bio2kg.org/resource/noncode" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/RAP-DB" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "expression" + "@value": "genome" }, { - "@value": "nucleotide" + "@value": "dna" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.noncode.org/" - }, - "https://bioregistry.io/schema/#0000005": "377550", - "https://bioregistry.io/schema/#0000006": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=377550" + "@id": "https://rapdb.dna.affrc.go.jp/" }, - "https://bioregistry.io/schema/#0000029": { - "@value": "noncodev3" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.plant", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.identifiers.org/registry/sabiork.compound", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.s19src", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://orcid.org/0000-0002-6242-2167", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nikolaos Moustakas" + "https://bioregistry.io/schema/#0000005": "Os01t0883800-02", + "https://bioregistry.io/schema/#0000006": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1", + "https://bioregistry.io/schema/#0000008": "^Os\\S+t\\d{7}-\\d{2}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=Os01t0883800-02" }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "nikolaos.moustakas@catalysis.de" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SMART", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "http://aber-owl.net/ontology/RDFS", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "https://bioregistry.io/schema/#0000029": { + "@value": "rapdb.transcript" } }, { - "@id": "https://bioregistry.io/registry/msigdb", + "@id": "https://bioregistry.io/registry/pathoplant", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can", + "http://purl.org/dc/terms/description": "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Molecular Signatures Database" + "@value": "PathoPlant®" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/MSigDB" + "@id": "https://registry.bio2kg.org/resource/pathoplant" }, + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "protein" + }, + { + "@value": "interaction" + }, + { + "@value": "gene expression" + }, + { + "@value": "pathway" + }, + { + "@value": "small molecule" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.gsea-msigdb.org" + "@id": "http://www.pathoplant.de" }, - "https://bioregistry.io/schema/#0000005": "M1", - "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/msigdb/$1", - "https://bioregistry.io/schema/#0000008": "^M\\d+$", + "https://bioregistry.io/schema/#0000005": "MO000027", + "https://bioregistry.io/schema/#0000006": "http://www.pathoplant.de/detail.php?accNo=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "msig" + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" }, - "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/msigdb/", + "https://bioregistry.io/schema/#0000024": "http://www.pathoplant.de/detail.php?accNo=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://biopragmatics.github.io/providers/msigdb/M1" + "@id": "http://www.pathoplant.de/detail.php?accNo=MO000027" }, "https://bioregistry.io/schema/#0000029": { - "@value": "msigdb" - } - }, - { - "@id": "https://registry.identifiers.org/registry/mobidb", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "pathoplant" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nbn", + "@id": "https://bioregistry.io/registry/biofactoid", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/registry/civic", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/civic.tid" - }, - { - "@id": "https://bioregistry.io/registry/civic.gid" - }, - { - "@id": "https://bioregistry.io/registry/civic.sid" - }, - { - "@id": "https://bioregistry.io/registry/civic.did" - }, + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/PathwayCommons/factoid" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Biofactoid" + }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/registry/civic.vid" + "@value": "biocuration" }, { - "@id": "https://bioregistry.io/registry/civic.aid" + "@value": "database" }, { - "@id": "https://bioregistry.io/registry/civic.eid" + "@value": "relationships" } - ] + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://biofactoid.org/" + }, + "https://bioregistry.io/schema/#0000005": "fdb8a927-45c3-48b7-9743-cbb5e16837fa", + "https://bioregistry.io/schema/#0000006": "https://biofactoid.org/document/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-8912-5699" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://biofactoid.org/document/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://biofactoid.org/document/fdb8a927-45c3-48b7-9743-cbb5e16837fa" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "biofactoid" + } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PASS2", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/RGD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/umls", + "@id": "https://registry.identifiers.org/registry/pdb.ligand", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://registry.identifiers.org/registry/cattleqtldb", + "@id": "https://bioportal.bioontology.org/ontologies/MAT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.obofoundry.org/ontology/wbls", + "@id": "https://registry.bio2kg.org/resource/worfdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/htn", + "@id": "https://bioregistry.io/registry/probonto", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines", + "http://purl.org/dc/terms/description": "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/aellenhicks/htn_owl" + "@id": "https://github.com/probonto/ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Hypertension Ontology" + "@value": "Probability Distribution Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioportal.bioontology.org/ontologies/HTN" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/probonto" }, { - "@id": "http://aber-owl.net/ontology/HTN" + "@id": "https://fairsharing.org/FAIRsharing.8zqzm9" }, { - "@id": "http://www.ontobee.org/ontology/HTN" + "@id": "https://registry.identifiers.org/registry/probonto" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/htn" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/probonto" }, { - "@id": "https://www.obofoundry.org/ontology/htn" + "@id": "https://bioregistry.io/metaregistry/biocontext/PROBONTO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" + "@value": "ontology" }, { - "@value": "ontology" + "@value": "statistics" + }, + { + "@value": "computational biology" + }, + { + "@value": "systems biology" + }, + { + "@value": "mathematics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/aellenhicks/htn_owl" + "@id": "http://probonto.org" }, - "https://bioregistry.io/schema/#0000005": "00000014", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/HTN_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000005": "c0000005", + "https://bioregistry.io/schema/#0000006": "http://www.probonto.org/ontology#PROB_$1", + "https://bioregistry.io/schema/#0000008": "^(c|k)\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/htn.owl" + "@id": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/probonto.ttl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-1795-5570" + "@id": "https://orcid.org/0000-0003-4614-562X" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/HTN_", + "https://bioregistry.io/schema/#0000024": "http://www.probonto.org/ontology#PROB_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/HTN_00000014" + "@id": "http://www.probonto.org/ontology#PROB_c0000005" }, "https://bioregistry.io/schema/#0000029": { - "@value": "htn" + "@value": "probonto" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PAO", + "@id": "http://aber-owl.net/ontology/CTCAE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pass2", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.EXPT", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/homd.taxon", + "@id": "https://bioregistry.io/registry/xuo", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Oral Microbiome Database" + "@value": "XUO" + }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/hsapdv" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "xuo" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/tgma", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/genpept", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "GenPept" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/homd.taxon" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/HOMD" - }, - { - "@id": "https://registry.identifiers.org/registry/homd.taxon" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/homd.taxon" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/genpept" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HOMD.TAXON" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "taxonomy" + "@id": "https://registry.identifiers.org/registry/genpept" }, { - "@value": "microbial" + "@id": "https://bioregistry.io/metaregistry/biocontext/GENPEPT" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.homd.org/index.php" + "@id": "https://www.ncbi.nlm.nih.gov/protein" }, - "https://bioregistry.io/schema/#0000005": "811", - "https://bioregistry.io/schema/#0000006": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "CAA71118.1", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept", + "https://bioregistry.io/schema/#0000008": "^\\w{3}\\d{5}(\\.\\d+)?$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/genpept:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=811" + "@id": "https://www.ncbi.nlm.nih.gov/protein/CAA71118.1?report=genpept" }, "https://bioregistry.io/schema/#0000029": { - "@value": "homd.taxon" + "@value": "genpept" } }, { - "@id": "https://bioregistry.io/registry/lpt", + "@id": "https://registry.identifiers.org/registry/atc", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/registry/pride", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit.", + "http://purl.org/dc/terms/description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology" + "@id": "https://github.com/PRIDE-Utilities/pride-ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Livestock Product Trait Ontology" + "@value": "PRIDE Controlled Vocabulary" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.g78mbm" + "@id": "https://bioregistry.io/metaregistry/biocontext/PRIDE" }, { - "@id": "https://bioportal.bioontology.org/ontologies/LPT" + "@id": "https://registry.bio2kg.org/resource/pride" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/LPT" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/pride" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/LPT" + "@id": "https://fairsharing.org/FAIRsharing.e1byny" }, { - "@id": "http://aber-owl.net/ontology/LPT" + "@id": "http://aber-owl.net/ontology/PRIDE" + }, + { + "@id": "https://www.uniprot.org/database/DB-0130" + }, + { + "@id": "https://www.re3data.org/repository/r3d100010137" + }, + { + "@id": "https://registry.identifiers.org/registry/pride" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pride" } ], "http://www.w3.org/ns/dcat#keyword": [ @@ -151718,2470 +151729,2500 @@ "@value": "ontology" }, { - "@value": "animal husbandry" + "@value": "protein" + }, + { + "@value": "proteomics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology" + "@id": "https://github.com/PRIDE-Utilities/pride-ontology" }, - "https://bioregistry.io/schema/#0000005": "0000156", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/LPT_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "0000006", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/PRIDE_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "https://github.com/AnimalGenome/livestock-product-trait-ontology/raw/master/current_release/lpt.owl" + "@id": "https://raw.githubusercontent.com/PRIDE-Utilities/pride-ontology/master/pride_cv.owl" }, "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-2346-5201" + "@id": "https://orcid.org/0000-0001-6579-6941" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/LPT_", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/PRIDE_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/LPT_0000156" + "@id": "http://purl.obolibrary.org/obo/PRIDE_0000006" }, "https://bioregistry.io/schema/#0000029": { - "@value": "lpt" + "@value": "pride" } }, { - "@id": "https://www.obofoundry.org/ontology/bfo", + "@id": "https://cropontology.org/ontology/CO_320", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/iobc", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\".", + "@id": "https://www.ebi.ac.uk/ols4/ontologies/sio", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/kushidat/IOBC" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Interlinking Ontology for Biological Concepts" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioportal.bioontology.org/ontologies/IOBC" - }, - { - "@id": "http://aber-owl.net/ontology/IOBC" - } - ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/kushidat/IOBC" - }, - "https://bioregistry.io/schema/#0000005": "200906038218908385", - "https://bioregistry.io/schema/#0000006": "http://purl.jp/bio/4/id/$1", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://aber-owl.net/media/ontologies/IOBC/25/iobc.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0784-4113" - }, - "https://bioregistry.io/schema/#0000024": "http://purl.jp/bio/4/id/", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.jp/bio/4/id/200906038218908385" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "iobc" + "@id": "https://bioregistry.io/metaregistry/ols" } }, { - "@id": "https://fairsharing.org/FAIRsharing.gdszhh", + "@id": "https://registry.identifiers.org/registry/iuphar.family", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/PMR", + "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.re3data.org/repository/r3d100011931", + "@id": "https://www.obofoundry.org/ontology/disdriv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/smid", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIREX", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "https://bioregistry.io/registry/piroplasma", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. ", + "http://purl.org/dc/terms/description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "C. elegans Small Molecule Identifier Database" + "@value": "PiroplasmaDB" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/piroplasma" + }, + { + "@id": "https://registry.identifiers.org/registry/piroplasma" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PIROPLASMA" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://smid-db.org/" + "@id": "http://piroplasmadb.org/" }, - "https://bioregistry.io/schema/#0000005": "137", - "https://bioregistry.io/schema/#0000006": "https://smid-db.org/smid/$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "TA14985", + "https://bioregistry.io/schema/#0000006": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1", + "https://bioregistry.io/schema/#0000008": "^TA\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "SMID-DB" - }, - "https://bioregistry.io/schema/#0000024": "https://smid-db.org/smid/", + "https://bioregistry.io/schema/#0000024": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "https://bioregistry.io/schema/#0000027": { - "@id": "https://smid-db.org/smid/137" + "@id": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=TA14985" }, "https://bioregistry.io/schema/#0000029": { - "@value": "smid" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011301", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "piroplasma" } }, { - "@id": "https://registry.identifiers.org/registry/genprop", + "@id": "https://registry.identifiers.org/registry/vfb", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.174", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/hl7" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ensembl.bacteria", + "@id": "https://registry.identifiers.org/registry/datanator.gene", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.ENZYME", + "@id": "https://registry.bio2kg.org/resource/pato", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biolink" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/atc", + "@id": "https://bioregistry.io/metaregistry/biocontext/TOXOPLASMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/GEO", + "@id": "https://registry.bio2kg.org/resource/sheepqtldb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/fovt", + "@id": "https://registry.identifiers.org/registry/pmr.workspace", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ORYZABASE.GENE", + "@id": "http://www.wikidata.org/entity/P2065", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/peptideatlas.dataset", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/MycoBank", + "@id": "https://registry.identifiers.org/registry/hgmd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P2871", + "@id": "http://www.wikidata.org/entity/P2796", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/wikidata" } }, { - "@id": "https://registry.identifiers.org/registry/pmap.substratedb", + "@id": "https://registry.identifiers.org/registry/charprot", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "http://www.wikidata.org/entity/P4317", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://orcid.org/0000-0002-0629-0446", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Andreas Ledl" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "andreas.ledl1@fhnw.ch" } }, { - "@id": "http://aber-owl.net/ontology/PORO", + "@id": "https://www.obofoundry.org/ontology/dideo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://bioregistry.io/registry/runbiosimulations", + "@id": "https://bioregistry.io/registry/mmp.ref", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive.", + "http://purl.org/dc/terms/description": "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "runBioSimulations" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/runbiosimulations" + "@value": "MarRef" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mmp.ref" + }, + { + "@id": "https://registry.identifiers.org/registry/mmp.ref" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MMP.REF" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icahn.mssm.edu/" + "@id": "https://mmp.sfb.uit.no/databases/marref/" }, - "https://bioregistry.io/schema/#0000005": "5fde96bdc5f1aa9ff0cce18a", - "https://bioregistry.io/schema/#0000006": "https://run.biosimulations.org/simulations/$1", - "https://bioregistry.io/schema/#0000008": "^[0-9a-z]{24,24}$", + "https://bioregistry.io/schema/#0000005": "MMP3312982.2", + "https://bioregistry.io/schema/#0000006": "https://mmp.sfb.uit.no/databases/marref/#/records/$1", + "https://bioregistry.io/schema/#0000008": "^MMP\\d+.\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://run.biosimulations.org/simulations/", + "https://bioregistry.io/schema/#0000024": "https://mmp.sfb.uit.no/databases/marref/#/records/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://run.biosimulations.org/simulations/5fde96bdc5f1aa9ff0cce18a" + "@id": "https://mmp.sfb.uit.no/databases/marref/#/records/MMP3312982.2" }, "https://bioregistry.io/schema/#0000029": { - "@value": "runbiosimulations" - } - }, - { - "@id": "http://www.wikidata.org/entity/P683", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@value": "mmp.ref" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tair.gene", + "@id": "https://bioregistry.io/metaregistry/biocontext/NCIT", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "http://aber-owl.net/ontology/SIBO", + "@id": "https://cropontology.org/ontology/CO_331", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/cropoct" } }, { - "@id": "https://bioregistry.io/registry/insdc.gcf", + "@id": "https://bioregistry.io/registry/cryoem", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage.", + "http://purl.org/dc/terms/description": "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Genome assembly database - RefSeq accessions" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://registry.identifiers.org/registry/refseq.gcf" + "@value": "Cryo Electron Microscopy ontology" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "https://bioportal.bioontology.org/ontologies/CRYOEM" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/cryoem" + }, + { + "@id": "http://aber-owl.net/ontology/CRYOEM" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.q47I0t" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "ontology" + }, + { + "@value": "structural biology" + } + ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.ncbi.nlm.nih.gov/" + "@id": "http://scipion.i2pc.es/ontology/cryoem" }, - "https://bioregistry.io/schema/#0000005": "GCF_000001405", - "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/datasets/genome/$1", - "https://bioregistry.io/schema/#0000008": "^GCF_[0-9]{9}(\\.[0-9]+)?$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000016": { - "@id": "https://bioregistry.io/registry/ncbi.assembly" + "https://bioregistry.io/schema/#0000005": "0000052", + "https://bioregistry.io/schema/#0000006": "http://scipion.i2pc.es/ontology/CRYOEM_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://scipion.i2pc.es/ontology/cryoem/releases/2021-03-09/cryoem.owl" }, - "https://bioregistry.io/schema/#0000023": { - "@value": "insdc.gcf" + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9473-283X" }, - "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/datasets/genome/", + "https://bioregistry.io/schema/#0000024": "http://scipion.i2pc.es/ontology/CRYOEM_", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405" + "@id": "http://scipion.i2pc.es/ontology/CRYOEM_0000052" }, "https://bioregistry.io/schema/#0000029": { - "@value": "insdc.gcf" + "@value": "cryoem" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/co_341", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dpv", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/efo", + "@id": "https://bioregistry.io/registry/ecao", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.", + "http://purl.org/dc/terms/description": "None", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/efo/" + "@id": "https://github.com/echinoderm-ontology/ecao_ontology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Experimental Factor Ontology" + "@value": "The Echinoderm Anatomy and Development Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/EFO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/EFO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EFO" + "@id": "http://www.ontobee.org/ontology/ECAO" }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/EFO" + "@id": "https://bioportal.bioontology.org/ontologies/ECAO" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EFO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/ecao" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/efo" + "@id": "http://aber-owl.net/ontology/ECAO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/efo" - }, + "@id": "https://www.obofoundry.org/ontology/ecao" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "http://aber-owl.net/ontology/EFO" + "@value": "obo" }, { - "@id": "https://fairsharing.org/FAIRsharing.1gr4tz" - }, + "@value": "ontology" + } + ], + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/echinoderm-ontology/ecao_ontology" + }, + "https://bioregistry.io/schema/#0000005": "0107180", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ECAO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/ecao.owl" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000017": [ { - "@id": "https://registry.identifiers.org/registry/efo" + "@id": "https://bioregistry.io/registry/uberon" }, { - "@id": "http://www.wikidata.org/entity/P11956" + "@id": "https://bioregistry.io/registry/cl" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/EFO" + "@id": "https://bioregistry.io/registry/ro" } ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-3625-0955" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ECAO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/ECAO_0107180" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "ecao" + } + }, + { + "@id": "https://bioregistry.io/registry/vita", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Virus' miRNA target" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.bio2kg.org/resource/vita" + }, "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "functional genomics" + "@value": "rna" }, { - "@value": "ontology" + "@value": "gene expression" + }, + { + "@value": "structure" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/efo" - }, - "https://bioregistry.io/schema/#0000005": "0005147", - "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/efo/EFO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.ebi.ac.uk/efo/efo.owl" + "@id": "http://vita.mbc.nctu.edu.tw/" }, + "https://bioregistry.io/schema/#0000005": "AB016785", + "https://bioregistry.io/schema/#0000006": "http://vita.mbc.nctu.edu.tw/search.php?acc=$1", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3458-4839" - }, - "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/efo/EFO_", - "https://bioregistry.io/schema/#0000026": { - "@id": "https://ror.org/02catss52" - }, + "https://bioregistry.io/schema/#0000024": "http://vita.mbc.nctu.edu.tw/search.php?acc=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ebi.ac.uk/efo/EFO_0005147" + "@id": "http://vita.mbc.nctu.edu.tw/search.php?acc=AB016785" }, "https://bioregistry.io/schema/#0000029": { - "@value": "efo" + "@value": "vita" } }, { - "@id": "https://bioregistry.io/registry/envo", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/hPSCreg", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/cellosaurus" + } + }, + { + "@id": "https://orcid.org/0000-0002-0784-4113", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Tatsuya Kushida" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "kushida@biosciencedbc.jp" + } + }, + { + "@id": "http://aber-owl.net/ontology/ZP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/OMP", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/pato", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/symp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations.", + "http://purl.org/dc/terms/description": "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EnvironmentOntology/envo" + "@id": "https://github.com/DiseaseOntology/SymptomOntology" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Environment Ontology" + "@value": "Symptom Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://www.ontobee.org/ontology/ENVO" - }, - { - "@id": "https://www.obofoundry.org/ontology/envo" + "@id": "https://fairsharing.org/FAIRsharing.ay74mj" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/envo" + "@id": "https://bioregistry.io/metaregistry/biocontext/SYMP" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/envo" + "@id": "https://www.obofoundry.org/ontology/symp" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENVO" + "@id": "http://aber-owl.net/ontology/SYMP" }, { - "@id": "http://aber-owl.net/ontology/ENVO" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/symp" }, { - "@id": "https://fairsharing.org/FAIRsharing.azqskx" + "@id": "https://bioportal.bioontology.org/ontologies/SYMP" }, { - "@id": "https://bioportal.bioontology.org/ontologies/ENVO" + "@id": "http://www.wikidata.org/entity/P8656" }, { - "@id": "http://agroportal.lirmm.fr/ontologies/ENVO" + "@id": "https://registry.bio2kg.org/resource/symptom" }, { - "@id": "https://registry.identifiers.org/registry/envo" + "@id": "http://www.ontobee.org/ontology/SYMP" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "nutritional science" + "@value": "pain medicine" }, { - "@value": "life science" + "@value": "ontology" }, { - "@value": "ecology" + "@value": "biomedical science" }, { - "@value": "environmental science" + "@value": "life science" }, { "@value": "obo" - }, - { - "@value": "ontology" - }, - { - "@value": "epidemiology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://environmentontology.org/" + "@id": "http://symptomontologywiki.igs.umaryland.edu/mediawiki/index.php/Main_Page" }, - "https://bioregistry.io/schema/#0000005": "09200010", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ENVO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7,8}$", + "https://bioregistry.io/schema/#0000005": "0019171", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SYMP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/envo.owl" + "@id": "http://purl.obolibrary.org/obo/symp.owl" }, "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/po" - }, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/scdo" + }, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-8910-9851" + }, + "https://bioregistry.io/schema/#0000023": { + "@value": "SYMP" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SYMP_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/SYMP_0019171" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "symp" + } + }, + { + "@id": "https://bioregistry.io/registry/repeatsdb.structure", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "RepeatsDB Structure" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/repeatsdb.structure" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://repeatsdb.org/" + }, + "https://bioregistry.io/schema/#0000005": "2gc4E", + "https://bioregistry.io/schema/#0000006": "https://repeatsdb.org/structure/$1", + "https://bioregistry.io/schema/#0000008": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://repeatsdb.org/structure/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://repeatsdb.org/structure/2gc4E" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "repeatsdb.structure" + } + }, + { + "@id": "http://www.ontobee.org/ontology/TRANS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.re3data.org/repository/r3d100012731", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/re3data" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/sgd.pathways", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/fungidb", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "FungiDB" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNGIDB" }, { - "@id": "https://bioregistry.io/registry/ro" + "@id": "https://www.re3data.org/repository/r3d100011906" }, { - "@id": "https://bioregistry.io/registry/foodon" + "@id": "https://registry.identifiers.org/registry/fungidb" }, { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fungidb" }, { - "@id": "https://bioregistry.io/registry/chebi" + "@id": "https://fairsharing.org/FAIRsharing.xf30yc" } ], - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/agro" - }, - { - "@id": "https://bioregistry.io/registry/ecto" - }, - { - "@id": "https://bioregistry.io/registry/ons" - }, - { - "@id": "https://bioregistry.io/registry/foodon" - }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "genomics" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://fungidb.org/fungidb" + }, + "https://bioregistry.io/schema/#0000005": "CNBG_0001", + "https://bioregistry.io/schema/#0000006": "https://fungidb.org/fungidb/app/record/gene/$1", + "https://bioregistry.io/schema/#0000008": "^[A-Za-z_0-9]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-7591-0020" + }, + "https://bioregistry.io/schema/#0000024": "https://fungidb.org/fungidb/app/record/gene/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://fungidb.org/fungidb/app/record/gene/CNBG_0001" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fungidb" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.v9n3gk", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/pseudo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://registry.identifiers.org/registry/opb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/FMA", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.qx2rvz", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/bionumbers", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "BioNumbers" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/pco" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bionumbers" }, { - "@id": "https://bioregistry.io/registry/rbo" + "@id": "http://edamontology.org/data_2660" }, { - "@id": "https://bioregistry.io/registry/cdno" + "@id": "https://registry.identifiers.org/registry/bionumbers" }, { - "@id": "https://bioregistry.io/registry/scdo" + "@id": "https://registry.bio2kg.org/resource/bionumbers" }, { - "@id": "https://bioregistry.io/registry/ecocore" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIONUMBERS" } ], - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4366-3088" + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://bionumbers.hms.harvard.edu" + }, + "https://bioregistry.io/schema/#0000005": "104674", + "https://bioregistry.io/schema/#0000006": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=104674" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "bionumbers" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/biocontext" + } + }, + { + "@id": "http://www.ontobee.org/ontology/ORNASEQ", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://orcid.org/0000-0002-0142-5591", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Citlalli Mejía-Almonte" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "citlalli.mejiaalmonte@gmail.com" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/OBI", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" + } + }, + { + "@id": "https://bioregistry.io/registry/linguist", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Registry of programming languages for the Linguist program for detecting and highlighting programming languages.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/github/linguist" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Linguist" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/linguist" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ENVO_", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://github.com/github/linguist" + }, + "https://bioregistry.io/schema/#0000005": "Python", + "https://bioregistry.io/schema/#0000006": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1", + "https://bioregistry.io/schema/#0000008": "^[a-zA-Z0-9 +#'*]+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/ENVO_09200010" + "@id": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#Python" }, "https://bioregistry.io/schema/#0000029": { - "@value": "envo" + "@value": "linguist" } }, { - "@id": "https://www.uniprot.org/database/DB-0221", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/pubchem.compound", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/DepMap", + "@id": "https://registry.bio2kg.org/resource/genetree", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/cdpd", + "@id": "https://bioregistry.io/registry/pesticides", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients.", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Alan Wood's Pesticides" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.alanwood.net/pesticides" + }, + "https://bioregistry.io/schema/#0000005": "derivatives%2Fthiocyclam%20hydrochloride", + "https://bioregistry.io/schema/#0000006": "http://www.alanwood.net/pesticides/$1.html", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/pesticides:", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.alanwood.net/pesticides/derivatives%2Fthiocyclam%20hydrochloride.html" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "pesticides" } }, { - "@id": "https://www.obofoundry.org/ontology/chmo", + "@id": "https://bioregistry.io/metaregistry/biocontext/D1ID", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/obofoundry" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ncbiprotein", + "@id": "https://fairsharing.org/FAIRsharing.mjnypw", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://www.uniprot.org/database/DB-0144", + "@id": "https://bioportal.bioontology.org/ontologies/ROLEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/icd11", + "@id": "https://bioregistry.io/registry/ppdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.", + "http://purl.org/dc/terms/description": "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. ", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 11th Revision" + "@value": "Pesticide Properties DataBase" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.7k8zh0" + }, + "http://www.w3.org/ns/dcat#keyword": { + "@value": "life science" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://www.wikidata.org/entity/P7807" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.97805c" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biomedical science" - }, - { - "@value": "health science" - }, - { - "@value": "epidemiology" - }, - { - "@value": "global health" - } - ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://icd.who.int/" + "@id": "https://sitem.herts.ac.uk/aeru/ppdb/" }, - "https://bioregistry.io/schema/#0000005": "402558626", - "https://bioregistry.io/schema/#0000006": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1", - "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", + "https://bioregistry.io/schema/#0000005": "1484", + "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "ICD-11" + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9667-0572" }, - "https://bioregistry.io/schema/#0000024": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/ppdb:", "https://bioregistry.io/schema/#0000027": { - "@id": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/402558626" + "@id": "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/1484.htm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icd11" + "@value": "ppdb" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/BGEE.ORGAN", + "@id": "https://bioportal.bioontology.org/ontologies/BTO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/cmecs", + "@id": "https://bioportal.bioontology.org/ontologies/EFO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioportal" + } + }, + { + "@id": "https://orcid.org/0000-0002-4858-8056", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Mathias Uhlen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "mathias.uhlen@scilifelab.se" + } + }, + { + "@id": "https://bioregistry.io/registry/miro", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.", + "http://purl.org/dc/terms/description": "Application ontology for entities related to insecticide resistance in mosquitos", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/VEuPathDB-ontology/MIRO" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Costal and Marine Ecological Classification Standard" + "@value": "Mosquito insecticide resistance" }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ + { + "@id": "http://aber-owl.net/ontology/MIRO" + }, + { + "@id": "https://www.obofoundry.org/ontology/miro" + }, + { + "@id": "http://www.ontobee.org/ontology/MIRO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/miro" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRO" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sjf113" + }, + { + "@id": "https://bioportal.bioontology.org/ontologies/MIRO" + } + ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ecology" + "@value": "ontology" }, { - "@value": "marine ecology" + "@value": "life science" + }, + { + "@value": "obo" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://cmecscatalog.org/cmecs" + "@id": "https://github.com/VEuPathDB-ontology/MIRO" }, - "https://bioregistry.io/schema/#0000005": "595", - "https://bioregistry.io/schema/#0000006": "https://cmecscatalog.org/cmecs/classification/unit/$1.html", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/cmecs:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://cmecscatalog.org/cmecs/classification/unit/595.html" + "https://bioregistry.io/schema/#0000005": "40000617", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/MIRO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{8}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/miro.owl" }, + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-2497-2210" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/MIRO_", "https://bioregistry.io/schema/#0000029": { - "@value": "cmecs" + "@value": "miro" } }, { - "@id": "https://bioregistry.io/registry/norine", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/cst.ab", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/zp", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings.", + "http://purl.org/dc/terms/description": "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obophenotype/zebrafish-phenotype-ontology" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Nonribosomal Peptides Database" + "@value": "Zebrafish Phenotype Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/norine" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/zp" }, { - "@id": "https://registry.identifiers.org/registry/norine" + "@id": "https://bioregistry.io/metaregistry/biocontext/ZP" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/NORINE" + "@id": "http://www.ontobee.org/ontology/ZP" }, { - "@id": "https://registry.bio2kg.org/resource/norine" + "@id": "http://aber-owl.net/ontology/ZP" }, { - "@id": "https://fairsharing.org/FAIRsharing.gf8yhy" + "@id": "https://bioportal.bioontology.org/ontologies/ZP" + }, + { + "@id": "https://www.obofoundry.org/ontology/zp" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "obo" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://bioinfo.lifl.fr/norine/" + "@id": "https://github.com/obophenotype/zebrafish-phenotype-ontology" + }, + "https://bioregistry.io/schema/#0000005": "0019030", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/ZP_$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/zp.owl" }, - "https://bioregistry.io/schema/#0000005": "NOR00681", - "https://bioregistry.io/schema/#0000006": "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1", - "https://bioregistry.io/schema/#0000008": "^NOR\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://bioinfo.lifl.fr/norine/result.jsp?ID=", + "https://bioregistry.io/schema/#0000017": [ + { + "@id": "https://bioregistry.io/registry/bspo" + }, + { + "@id": "https://bioregistry.io/registry/uberon" + }, + { + "@id": "https://bioregistry.io/registry/go" + }, + { + "@id": "https://bioregistry.io/registry/zfa" + }, + { + "@id": "https://bioregistry.io/registry/ro" + }, + { + "@id": "https://bioregistry.io/registry/pato" + }, + { + "@id": "https://bioregistry.io/registry/bfo" + } + ], + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0002-9900-7880" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/ZP_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://bioinfo.lifl.fr/norine/result.jsp?ID=NOR00681" + "@id": "http://purl.obolibrary.org/obo/ZP_0019030" }, "https://bioregistry.io/schema/#0000029": { - "@value": "norine" + "@value": "zp" } }, { - "@id": "https://fairsharing.org/FAIRsharing.d2d84f", + "@id": "https://bioregistry.io/metaregistry/biocontext/SMPDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://registry.bio2kg.org/resource/grin", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/neurondb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "http://www.ontobee.org/ontology/OMIABIS", + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.256", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ontobee" + "@id": "https://bioregistry.io/metaregistry/hl7" } }, { - "@id": "https://registry.bio2kg.org/resource/biocatalogue", + "@id": "https://registry.bio2kg.org/resource/ensembl.metazoa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/registry/euclinicaltrials", + "@id": "https://bioregistry.io/registry/uniprot.ptm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/uniprot" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "EU Clinical Trials" + "@value": "UniProt Post-Translational Modification" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/EUCLINICALTRIALS" + "@value": "biochemistry" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/euclinicaltrials" + "@value": "structural biology" }, { - "@id": "https://registry.identifiers.org/registry/euclinicaltrials" + "@value": "post-translational modification" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.clinicaltrialsregister.eu/" + "@id": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/docs/ptmlist" }, - "https://bioregistry.io/schema/#0000005": "2008-005144-16", - "https://bioregistry.io/schema/#0000006": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1", - "https://bioregistry.io/schema/#0000008": "^\\d{4}\\-\\d{6}\\-\\d{2}$", + "https://bioregistry.io/schema/#0000005": "PTM-0450", + "https://bioregistry.io/schema/#0000006": "https://biopragmatics.github.io/providers/uniprot.ptm/$1", + "https://bioregistry.io/schema/#0000008": "^PTM-\\d{4}$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000023": { - "@value": "EUCTR" + "@value": "PTM" }, - "https://bioregistry.io/schema/#0000024": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=", + "https://bioregistry.io/schema/#0000024": "https://biopragmatics.github.io/providers/uniprot.ptm/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.clinicaltrialsregister.eu/ctr-search/search?query=2008-005144-16" + "@id": "https://biopragmatics.github.io/providers/uniprot.ptm/PTM-0450" }, "https://bioregistry.io/schema/#0000029": { - "@value": "euclinicaltrials" + "@value": "uniprot.ptm" } }, { - "@id": "https://bioregistry.io/registry/isbn", + "@id": "https://registry.identifiers.org/registry/validatordb", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/eo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/encode", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Standard Book Number (ISBN) is for identifying printed books.", + "http://purl.org/dc/terms/description": "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Standard Book Number" + "@value": "Encyclopedia of DNA Elements" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.bio2kg.org/resource/isbn" - }, - { - "@id": "http://edamontology.org/data_2634" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ISBN-13" + "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE" }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/isbn" + "@id": "https://www.re3data.org/repository/r3d100013051" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ISBN" + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE" }, { - "@id": "https://registry.identifiers.org/registry/isbn" + "@id": "https://fairsharing.org/FAIRsharing.v0hbjs" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/isbn" + "@id": "https://registry.identifiers.org/registry/encode" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "bibliography" - }, - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://isbndb.com/" - }, - "https://bioregistry.io/schema/#0000005": "9781584885658", - "https://bioregistry.io/schema/#0000006": "http://isbndb.com/search-all.html?kw=$1", - "https://bioregistry.io/schema/#0000008": "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": [ + "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ISBN-13" + "@value": "functional genomics" }, { - "@value": "ISBN-10" + "@value": "epigenetics" } ], - "https://bioregistry.io/schema/#0000024": "http://isbndb.com/search-all.html?kw=", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.encodeproject.org" + }, + "https://bioregistry.io/schema/#0000005": "ENCSR163RYW", + "https://bioregistry.io/schema/#0000006": "https://www.encodeproject.org/$1", + "https://bioregistry.io/schema/#0000008": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0001-5025-5886" + }, + "https://bioregistry.io/schema/#0000024": "https://www.encodeproject.org/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://isbndb.com/search-all.html?kw=9781584885658" + "@id": "https://www.encodeproject.org/ENCSR163RYW" }, "https://bioregistry.io/schema/#0000029": { - "@value": "isbn" - } - }, - { - "@id": "https://registry.identifiers.org/registry/4dn", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://registry.identifiers.org/registry/vectorbase", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@value": "encode" } }, { - "@id": "https://bioregistry.io/registry/go", + "@id": "https://bioregistry.io/registry/medlineplus", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.", - "http://purl.org/dc/terms/hasPart": { - "@id": "https://bioregistry.io/registry/go.rule" - }, + "http://purl.org/dc/terms/description": "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/geneontology/go-ontology" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Gene Ontology" + "@value": "MedlinePlus Health Topics" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.128" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GO" - }, - { - "@id": "https://bartoc.org/en/node/572" - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/go" - }, - { - "@id": "https://registry.bio2kg.org/resource/go" - }, - { - "@id": "http://agroportal.lirmm.fr/ontologies/GO" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/GO" - }, - { - "@id": "https://www.obofoundry.org/ontology/go" - }, - { - "@id": "http://www.wikidata.org/entity/P686" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/GO" - }, - { - "@id": "https://bioregistry.io/metaregistry/go/resolve/GO" - }, - { - "@id": "http://www.ontobee.org/ontology/GO" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.6xq0ee" + "@id": "http://aber-owl.net/ontology/MEDLINEPLUS" }, { - "@id": "https://registry.identifiers.org/registry/go" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.173" }, { - "@id": "https://www.re3data.org/repository/r3d100014165" + "@id": "https://registry.identifiers.org/registry/medlineplus" }, { - "@id": "https://www.uniprot.org/database/DB-0037" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/medlineplus" }, { - "@id": "http://edamontology.org/data_1176" + "@id": "https://bioregistry.io/metaregistry/biocontext/MEDLINEPLUS" }, { - "@id": "http://aber-owl.net/ontology/GO" + "@id": "https://fairsharing.org/FAIRsharing.bf8dsb" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/go" + "@id": "https://bioportal.bioontology.org/ontologies/MEDLINEPLUS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "gene" + "@value": "health science" }, { - "@value": "obo" + "@value": "medicine" }, { - "@value": "ontology" + "@value": "biomedical science" }, { - "@value": "life science" + "@value": "ontology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://geneontology.org/" - }, - "https://bioregistry.io/schema/#0000005": "0032571", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/GO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/go.owl" + "@id": "http://www.nlm.nih.gov/medlineplus/" }, + "https://bioregistry.io/schema/#0000005": "002804", + "https://bioregistry.io/schema/#0000006": "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000017": [ - { - "@id": "https://bioregistry.io/registry/ro" - }, - { - "@id": "https://bioregistry.io/registry/ncbitaxon" - }, - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/cl" - } - ], - "https://bioregistry.io/schema/#0000018": [ - { - "@id": "https://bioregistry.io/registry/uberon" - }, - { - "@id": "https://bioregistry.io/registry/agro" - }, - { - "@id": "https://bioregistry.io/registry/cl" - }, - { - "@id": "https://bioregistry.io/registry/ecto" - }, - { - "@id": "https://bioregistry.io/registry/maxo" - }, - { - "@id": "https://bioregistry.io/registry/pcl" - }, - { - "@id": "https://bioregistry.io/registry/planp" - }, - { - "@id": "https://bioregistry.io/registry/pco" - }, - { - "@id": "https://bioregistry.io/registry/envo" - }, - { - "@id": "https://bioregistry.io/registry/chiro" - }, - { - "@id": "https://bioregistry.io/registry/zp" - }, - { - "@id": "https://bioregistry.io/registry/xpo" - }, - { - "@id": "https://bioregistry.io/registry/ecocore" - } - ], "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-6787-2901" + "@id": "_:Nf56ce5accf304c63a0b83fc5a0e113c4" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "gomfid" - }, - { - "@value": "gobp" - }, - { - "@value": "gomf" - }, - { - "@value": "gocc" - }, - { - "@value": "goccid" - }, - { - "@value": "gobpid" - } - ], - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/GO_", + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/medlineplus:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/GO_0032571" + "@id": "http://www.nlm.nih.gov/medlineplus/ency/article/002804.htm" }, "https://bioregistry.io/schema/#0000029": { - "@value": "go" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/ydpm", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/TOPDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/RFAM", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://registry.identifiers.org/registry/gmd", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100012575", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/pmc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "medlineplus" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/BIOLINK", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "_:Nf56ce5accf304c63a0b83fc5a0e113c4", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "NLM Customer Service" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "custserv@nlm.nih.gov" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/clinicaltrials", + "@id": "https://www.obofoundry.org/ontology/mcro", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/dbprobe", + "@id": "https://bioregistry.io/metaregistry/go/resolve/KEGG_LIGAND", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://bioregistry.io/metaregistry/biolink/resolve/EDAM-OPERATION", + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/KEGG.PATHWAY", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biolink" } }, { - "@id": "https://bioregistry.io/registry/itis", + "@id": "https://bioregistry.io/registry/biostudies", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world.", + "http://purl.org/dc/terms/description": "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Integrated Taxonomic Information System" + "@value": "BioStudies database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bartoc.org/en/node/17791" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biostudies" }, { - "@id": "http://www.wikidata.org/entity/P815" + "@id": "https://www.re3data.org/repository/r3d100012627" }, { - "@id": "https://fairsharing.org/FAIRsharing.t19hpa" + "@id": "https://fairsharing.org/FAIRsharing.mtjvme" }, { - "@id": "https://www.re3data.org/repository/r3d100011213" + "@id": "https://registry.identifiers.org/registry/biostudies" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "life science" - }, - { - "@value": "taxonomy" + "@value": "biomedical science" }, { - "@value": "biodiversity" + "@value": "life science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.itis.gov/" + "@id": "https://www.ebi.ac.uk/biostudies/" }, - "https://bioregistry.io/schema/#0000005": "589462", - "https://bioregistry.io/schema/#0000006": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "S-EPMC6266652", + "https://bioregistry.io/schema/#0000006": "https://www.ebi.ac.uk/biostudies/studies/$1", + "https://bioregistry.io/schema/#0000008": "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4972-3782" - }, - "https://bioregistry.io/schema/#0000024": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", + "https://bioregistry.io/schema/#0000024": "https://www.ebi.ac.uk/biostudies/studies/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=589462" + "@id": "https://www.ebi.ac.uk/biostudies/studies/S-EPMC6266652" }, "https://bioregistry.io/schema/#0000029": { - "@value": "itis" + "@value": "biostudies" } }, { - "@id": "https://registry.identifiers.org/registry/flowrepository", + "@id": "https://registry.identifiers.org/registry/jaxmice", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/nlx.org", + "@id": "https://bioregistry.io/registry/tigrfam", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "NLXORG covers organisms.", - "http://purl.org/dc/terms/isPartOf": [ + "http://purl.org/dc/terms/description": "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "TIGR protein families" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/registry/nif" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/tigrfam" }, { - "@id": "https://bioregistry.io/metaregistry/bioregistry" + "@id": "http://edamontology.org/data_1141" + }, + { + "@id": "https://registry.identifiers.org/registry/tigrfam" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/TIGRFAM" + }, + { + "@id": "https://registry.bio2kg.org/resource/tigrfams" + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/TIGRFAM" } ], - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "NIF Standard Ontology: Organisms" - }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "taxonomy" + "@value": "protein" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/SciCrunch/NIF-Ontology" + "@id": "http://www.jcvi.org/cgi-bin/tigrfams/Listing.cgi" }, - "https://bioregistry.io/schema/#0000005": "090701", - "https://bioregistry.io/schema/#0000006": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000005": "TIGR00010", + "https://bioregistry.io/schema/#0000006": "https://www.ncbi.nlm.nih.gov/cdd?term=$1", + "https://bioregistry.io/schema/#0000008": "^TIGR\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7509-4801" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "NLXORG" - }, - "https://bioregistry.io/schema/#0000024": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_", + "https://bioregistry.io/schema/#0000024": "https://www.ncbi.nlm.nih.gov/cdd?term=", "https://bioregistry.io/schema/#0000027": { - "@id": "http://uri.neuinfo.org/nif/nifstd/nlx_organ_090701" + "@id": "https://www.ncbi.nlm.nih.gov/cdd?term=TIGR00010" }, "https://bioregistry.io/schema/#0000029": { - "@value": "nlx.org" + "@value": "tigrfam" } }, { - "@id": "https://bioregistry.io/registry/ogg", + "@id": "https://bioregistry.io/registry/dragondb.dna", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets.", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://bitbucket.org/hegroup/ogg" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "The Ontology of Genes and Genomes" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ogg" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.zmx7nn" - }, - { - "@id": "https://www.obofoundry.org/ontology/ogg" - }, - { - "@id": "http://aber-owl.net/ontology/OGG" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/OGG" - }, + "http://purl.org/dc/terms/description": "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information.", + "http://purl.org/dc/terms/isPartOf": [ { - "@id": "http://www.ontobee.org/ontology/OGG" + "@id": "https://bioregistry.io/registry/dragondb" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OGG" + "@id": "https://bioregistry.io/metaregistry/bioregistry" } ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "DragonDB DNA" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "obo" + "@id": "https://registry.identifiers.org/registry/dragondb.dna" }, { - "@value": "ontology" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/dragondb.dna" }, { - "@value": "biology" + "@id": "https://bioregistry.io/metaregistry/biocontext/DRAGONDB.DNA" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bitbucket.org/hegroup/ogg" - }, - "https://bioregistry.io/schema/#0000005": "3000887619", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OGG_$1", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.obolibrary.org/obo/ogg.owl" - }, - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-9189-9661" + "@id": "http://www.antirrhinum.net/" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OGG_", + "https://bioregistry.io/schema/#0000005": "3hB06", + "https://bioregistry.io/schema/#0000006": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA", + "https://bioregistry.io/schema/#0000008": "^\\d\\w+$", + "https://bioregistry.io/schema/#0000012": true, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/dragondb.dna:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://purl.obolibrary.org/obo/OGG_3000887619" + "@id": "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=3hB06;class=DNA" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ogg" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/reto", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "dragondb.dna" } }, { - "@id": "https://bioregistry.io/registry/hpa", + "@id": "https://bioregistry.io/registry/so", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers.", + "http://purl.org/dc/terms/description": "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/The-Sequence-Ontology/SO-Ontologies" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Protein Atlas tissue profile information" + "@value": "Sequence types and features ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/go/resolve/HPA" + "@id": "http://aber-owl.net/ontology/SO" }, { - "@id": "https://fairsharing.org/FAIRsharing.j0t0pe" + "@id": "https://bioportal.bioontology.org/ontologies/SO" }, { - "@id": "https://www.re3data.org/repository/r3d100010931" + "@id": "https://www.obofoundry.org/ontology/so" }, { - "@id": "https://registry.bio2kg.org/resource/hpa" + "@id": "https://registry.identifiers.org/registry/so" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/HPA" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/so" }, { - "@id": "https://registry.identifiers.org/registry/hpa" + "@id": "https://fairsharing.org/FAIRsharing.6bc7h9" }, { - "@id": "https://www.uniprot.org/database/DB-0046" + "@id": "https://bioregistry.io/metaregistry/biocontext/SO" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hpa" + "@id": "http://agroportal.lirmm.fr/ontologies/SO" + }, + { + "@id": "http://www.ontobee.org/ontology/SO" + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/so" + }, + { + "@id": "https://registry.bio2kg.org/resource/so" + }, + { + "@id": "https://bioregistry.io/metaregistry/go/resolve/SO" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "protein" + "@value": "dna" }, { - "@value": "biomedical science" + "@value": "ontology" }, { - "@value": "proteomics" + "@value": "bioinformatics" }, { - "@value": "structure" + "@value": "rna" }, { - "@value": "transcriptomics" + "@value": "life science" }, { - "@value": "systems biology" + "@value": "obo" + }, + { + "@value": "structure" + }, + { + "@value": "biology" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.proteinatlas.org/" + "@id": "http://www.sequenceontology.org/" + }, + "https://bioregistry.io/schema/#0000005": "0001157", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/so.owl" }, - "https://bioregistry.io/schema/#0000005": "ENSG00000026508", - "https://bioregistry.io/schema/#0000006": "http://www.proteinatlas.org/$1", - "https://bioregistry.io/schema/#0000008": "^ENSG\\d{11}$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000018": { + "@id": "https://bioregistry.io/registry/pcl" + }, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-4858-8056" + "@id": "https://orcid.org/0000-0002-0831-6427" }, - "https://bioregistry.io/schema/#0000024": "http://www.proteinatlas.org/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SO_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.proteinatlas.org/ENSG00000026508" + "@id": "http://purl.obolibrary.org/obo/SO_0001157" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hpa" + "@value": "so" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/BioCyc", + "@id": "https://bioregistry.io/metaregistry/biocontext/FlyBase", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.f1777e", + "@id": "https://registry.bio2kg.org/resource/sabiork.kinetic", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/PLASMODB", + "@id": "https://registry.identifiers.org/registry/odor", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/miriam" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/RICEGAP", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/bpdb", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database of biopesticides maintained by the University of Hertfordshire ", + "@id": "https://fairsharing.org/FAIRsharing.6xq0ee", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Bio-Pesticides DataBase" - }, - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "biopesticides" - }, - { - "@value": "pesticides" - }, - { - "@value": "biology" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://sitem.herts.ac.uk/aeru/bpdb/index.htm" - }, - "https://bioregistry.io/schema/#0000005": "2404", - "https://bioregistry.io/schema/#0000006": "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm", - "https://bioregistry.io/schema/#0000008": "^\\d+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/bpdb:", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://sitem.herts.ac.uk/aeru/bpdb/Reports/2404.htm" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "bpdb" + "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/swo", + "@id": "http://aber-owl.net/ontology/OM", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/Phytozome", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ncbi" + } + }, + { + "@id": "http://www.ontobee.org/ontology/OMO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ontobee" + } + }, + { + "@id": "https://www.obofoundry.org/ontology/xlmod", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/obofoundry" + } + }, + { + "@id": "https://bioregistry.io/registry/jcm", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community.", + "http://purl.org/dc/terms/description": "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/allysonlister/swo" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Software ontology" + "@value": "Japan Collection of Microorganisms" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "http://aber-owl.net/ontology/SWO" - }, - { - "@id": "http://www.ontobee.org/ontology/SWO" - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SWO" + "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/JCM" }, { - "@id": "https://fairsharing.org/FAIRsharing.sp3szt" + "@id": "https://bioregistry.io/metaregistry/biocontext/JCM" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/swo" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/jcm" }, { - "@id": "https://www.obofoundry.org/ontology/swo" + "@id": "https://registry.bio2kg.org/resource/jcm" }, { - "@id": "https://registry.bio2kg.org/resource/swo" + "@id": "https://registry.identifiers.org/registry/jcm" }, { - "@id": "https://bioportal.bioontology.org/ontologies/SWO" + "@id": "https://fairsharing.org/FAIRsharing.h2wrt2" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "obo" - }, - { - "@value": "ontology" + "@value": "microbial" }, { - "@value": "computer science" + "@value": "life science" }, { - "@value": "bioinformatics" + "@value": "taxonomy" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://github.com/allysonlister/swo" - }, - "https://bioregistry.io/schema/#0000005": "0000144", - "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/SWO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "https://raw.githubusercontent.com/allysonlister/swo/master/swo.owl" + "@id": "http://www.jcm.riken.go.jp/" }, + "https://bioregistry.io/schema/#0000005": "17254", + "https://bioregistry.io/schema/#0000006": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000018": { - "@id": "https://bioregistry.io/registry/mcro" - }, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-7702-4495" + "https://bioregistry.io/schema/#0000024": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=17254" }, - "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/SWO_", "https://bioregistry.io/schema/#0000029": { - "@value": "swo" + "@value": "jcm" } }, { - "@id": "https://bioregistry.io/registry/pfr", + "@id": "https://fairsharing.org/FAIRsharing.b7z8by", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/fairsharing" + } + }, + { + "@id": "https://bioregistry.io/registry/ssbd.dataset", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets.", + "http://purl.org/dc/terms/description": "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Proteoform Atlas" + "@value": "System Science of Biological Dynamics dataset" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://fairsharing.org/FAIRsharing.we2r5a" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://www.re3data.org/repository/r3d100012385" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.wqsxtg" - } - ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "data management" + "@value": "developmental biology" + }, + { + "@value": "cell biology" }, { - "@value": "subject agnostic" + "@value": "molecular dynamics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://repository.topdownproteomics.org/proteoforms" + "@id": "https://ssbd.riken.jp" }, - "https://bioregistry.io/schema/#0000005": "1001", - "https://bioregistry.io/schema/#0000006": "http://repository.topdownproteomics.org/proteoforms/$1", + "https://bioregistry.io/schema/#0000005": "1", + "https://bioregistry.io/schema/#0000006": "https://ssbd.riken.jp/database/dataset/$1", "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000023": { - "@value": "TDR" - }, - "https://bioregistry.io/schema/#0000024": "http://repository.topdownproteomics.org/proteoforms/", + "https://bioregistry.io/schema/#0000024": "https://ssbd.riken.jp/database/dataset/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://repository.topdownproteomics.org/proteoforms/1001" + "@id": "https://ssbd.riken.jp/database/dataset/1" }, "https://bioregistry.io/schema/#0000029": { - "@value": "pfr" + "@value": "ssbd.dataset" } }, { - "@id": "https://www.re3data.org/repository/r3d100012429", + "@id": "https://www.re3data.org/repository/r3d100011301", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/re3data" } }, { - "@id": "https://bioregistry.io/registry/ccf", + "@id": "https://registry.bio2kg.org/resource/ygob", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/prefixcommons" + } + }, + { + "@id": "http://www.wikidata.org/entity/P356", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/wikidata" + } + }, + { + "@id": "https://bioregistry.io/registry/commoncoreontology", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA.", + "http://purl.org/dc/terms/description": "The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest.\n\nCCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). Accordingly, CCO classes and relations are heavily constrained by the BFO framework, from which it inherits much of its basic semantic relationships.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/hubmapconsortium/ccf-ontology" + "@id": "https://github.com/CommonCoreOntology/CommonCoreOntologies" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Reference Atlas Common Coordinate Framework Ontology" + "@value": "Common Core Ontologies" }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "http://aber-owl.net/ontology/CCF" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012657" - }, + "http://www.w3.org/ns/dcat#keyword": [ { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/ccf" + "@value": "ontology" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CCF" + "@value": "upper-level ontology" } ], - "http://www.w3.org/ns/dcat#keyword": { - "@value": "ontology" - }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://bioportal.bioontology.org/ontologies/CCF" - }, - "https://bioregistry.io/schema/#0000005": "extraction_set", - "https://bioregistry.io/schema/#0000006": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1", - "https://bioregistry.io/schema/#0000008": "^\\S+$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://purl.org/ccf/releases/2.2.1/ccf.owl" + "@id": "http://www.ontologyrepository.com" }, + "https://bioregistry.io/schema/#0000005": "DirectiveInformationContentEntity", + "https://bioregistry.io/schema/#0000006": "http://www.ontologyrepository.com/CommonCoreOntologies/$1", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-3321-6137" - }, - "https://bioregistry.io/schema/#0000021": { - "@id": "https://orcid.org/0000-0003-4423-4370" + "@id": "https://orcid.org/0000-0001-9228-8838" }, - "https://bioregistry.io/schema/#0000024": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F", + "https://bioregistry.io/schema/#0000024": "http://www.ontologyrepository.com/CommonCoreOntologies/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2Fextraction_set" + "@id": "http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ccf" + "@value": "commoncoreontology" } }, { - "@id": "https://www.obofoundry.org/ontology/colao", + "@id": "https://www.obofoundry.org/ontology/miapa", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://registry.bio2kg.org/resource/ehda", + "@id": "https://bioregistry.io/metaregistry/biocontext/MIRBASE.MATURE", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://fairsharing.org/FAIRsharing.b1xD9f", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://orcid.org/0000-0001-9625-1899", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Bill Duncan" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "wdduncan@gmail.com" } }, { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/rrid" + "@id": "https://orcid.org/0000-0002-5520-6597", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Imke Tammen" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "imke.tammen@sydney.edu.au" } }, { - "@id": "http://aber-owl.net/ontology/ITO", + "@id": "https://registry.bio2kg.org/resource/kegg.orthology", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://registry.identifiers.org/registry/nuclearbd", + "@id": "http://www.ontobee.org/ontology/SPD", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/ontobee" } }, { - "@id": "https://bioregistry.io/registry/gmd.profile", + "@id": "https://bioregistry.io/registry/icd11", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.", + "http://purl.org/dc/terms/description": "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Golm Metabolome Database Profile" + "@value": "International Classification of Diseases, 11th Revision" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/GMD.PROFILE" + "@id": "https://fairsharing.org/FAIRsharing.97805c" }, { - "@id": "https://registry.identifiers.org/registry/gmd.profile" + "@id": "http://oid-info.com/get/2.16.840.1.113883.6.347" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/gmd.profile" + "@id": "http://www.wikidata.org/entity/P7807" + } + ], + "http://www.w3.org/ns/dcat#keyword": [ + { + "@value": "health science" + }, + { + "@value": "epidemiology" + }, + { + "@value": "global health" + }, + { + "@value": "biomedical science" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://gmd.mpimp-golm.mpg.de/" + "@id": "https://icd.who.int/" }, - "https://bioregistry.io/schema/#0000005": "10b38aaf-b977-4950-85b8-f4775f66658d", - "https://bioregistry.io/schema/#0000006": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1", - "https://bioregistry.io/schema/#0000008": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", + "https://bioregistry.io/schema/#0000005": "402558626", + "https://bioregistry.io/schema/#0000006": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1", + "https://bioregistry.io/schema/#0000008": "^[1-9]\\d*$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=", + "https://bioregistry.io/schema/#0000023": { + "@value": "ICD-11" + }, + "https://bioregistry.io/schema/#0000024": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=10b38aaf-b977-4950-85b8-f4775f66658d" + "@id": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/402558626" }, "https://bioregistry.io/schema/#0000029": { - "@value": "gmd.profile" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ap169a", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/nbo", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bdgp.est", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/JAX", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "icd11" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ASPGD.LOCUS", + "@id": "https://registry.bio2kg.org/resource/pt", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "http://aber-owl.net/ontology/FAO", + "@id": "https://registry.identifiers.org/registry/mobidb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/aberowl" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/hipsci", + "@id": "https://bioregistry.io/registry/uniprot.chain", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Cell line databases/resources", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, + "http://purl.org/dc/terms/description": "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/uniprot" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Human Induced Pluripotent Stem Cells Initiative" + "@value": "UniProt Chain" }, "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/HipSci" + "@id": "https://registry.identifiers.org/registry/uniprot.chain" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.hipsci.org" + "@id": "https://www.uniprot.org" }, - "https://bioregistry.io/schema/#0000005": "HPSI0114i-bezi_1", - "https://bioregistry.io/schema/#0000006": "https://www.hipsci.org/lines/#/lines/$1", + "https://bioregistry.io/schema/#0000005": "PRO_0000016681", + "https://bioregistry.io/schema/#0000006": "http://purl.uniprot.org/annotation/$1", + "https://bioregistry.io/schema/#0000008": "^PRO_[0-9]{10}$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.hipsci.org/lines/#/lines/", + "https://bioregistry.io/schema/#0000023": { + "@value": "UPPRO" + }, + "https://bioregistry.io/schema/#0000024": "http://purl.uniprot.org/annotation/", "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.hipsci.org/lines/#/lines/HPSI0114i-bezi_1" + "@id": "http://purl.uniprot.org/annotation/PRO_0000016681" }, "https://bioregistry.io/schema/#0000029": { - "@value": "hipsci" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/geno", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@value": "uniprot.chain" } }, { - "@id": "https://bioregistry.io/registry/ucsc", + "@id": "https://bioregistry.io/registry/phenolexplorer", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations.", + "http://purl.org/dc/terms/description": "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "UCSC Genome Browser" + "@value": "Phenol-Explorer" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/UCSC" + "@id": "https://www.re3data.org/repository/r3d100012197" }, { - "@id": "http://www.wikidata.org/entity/P2576" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/phenolexplorer" }, { - "@id": "https://www.uniprot.org/database/DB-0139" + "@id": "https://registry.identifiers.org/registry/phenolexplorer" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/PHENOLEXPLORER" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://genome.ucsc.edu/" + "@id": "http://www.phenol-explorer.eu/foods/" }, - "https://bioregistry.io/schema/#0000005": "uc001rvw.5", - "https://bioregistry.io/schema/#0000006": "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1", + "https://bioregistry.io/schema/#0000005": "75", + "https://bioregistry.io/schema/#0000006": "http://phenol-explorer.eu/foods/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "ftp://hgdownload.cse.ucsc.edu/goldenPath/", + "https://bioregistry.io/schema/#0000024": "http://phenol-explorer.eu/foods/", "https://bioregistry.io/schema/#0000027": { - "@id": "ftp://hgdownload.cse.ucsc.edu/goldenPath/uc001rvw.5" + "@id": "http://phenol-explorer.eu/foods/75" }, "https://bioregistry.io/schema/#0000029": { - "@value": "ucsc" + "@value": "phenolexplorer" } }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/MA", + "@id": "https://bioregistry.io/metaregistry/biocontext/BYKDB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/go" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/encode", + "@id": "http://aber-owl.net/ontology/VO", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "http://aber-owl.net/ontology/OMRSE", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://bioregistry.io/registry/vmc", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Encyclopedia of DNA Elements" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://bioregistry.io/metaregistry/biocontext/ENCODE" - }, - { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/ENCODE" - }, - { - "@id": "https://www.re3data.org/repository/r3d100013051" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.v0hbjs" - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/encode" - }, - { - "@id": "https://registry.identifiers.org/registry/encode" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "functional genomics" - }, - { - "@value": "epigenetics" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.encodeproject.org" - }, - "https://bioregistry.io/schema/#0000005": "ENCSR163RYW", - "https://bioregistry.io/schema/#0000006": "https://www.encodeproject.org/$1", - "https://bioregistry.io/schema/#0000008": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5025-5886" + "@value": "Variation Modelling Collaboration" }, - "https://bioregistry.io/schema/#0000024": "https://www.encodeproject.org/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.encodeproject.org/ENCSR163RYW" + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://bioregistry.io/metaregistry/biolink/resolve/VMC" }, + "https://bioregistry.io/schema/#0000012": true, "https://bioregistry.io/schema/#0000029": { - "@value": "encode" + "@value": "vmc" } }, { - "@id": "https://registry.identifiers.org/registry/encode", + "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/Cell_Biolabs", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/cellosaurus" } }, { - "@id": "https://registry.bio2kg.org/resource/aclame", + "@id": "https://bioregistry.io/metaregistry/biocontext/ICO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/registry/ihw", + "@id": "https://bioregistry.io/registry/hms.lincs.dataset", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics.", + "http://purl.org/dc/terms/description": "", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Histocompatibility Workshop cell lines" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": { - "@id": "https://bioregistry.io/metaregistry/cellosaurus/resolve/IHW" + "@value": "HMS Library of Integrated Network-based Cellular Signatures Datasets" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.fredhutch.org/en/research/institutes-networks-ircs/international-histocompatibility-working-group.html" + "@id": "https://lincs.hms.harvard.edu/db/datasets/" }, - "https://bioregistry.io/schema/#0000005": "IHW09326", - "https://bioregistry.io/schema/#0000008": "^IHW\\d+$", + "https://bioregistry.io/schema/#0000005": "20003", + "https://bioregistry.io/schema/#0000006": "https://lincs.hms.harvard.edu/db/datasets/$1", + "https://bioregistry.io/schema/#0000008": "^2\\d{4}$", "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://lincs.hms.harvard.edu/db/datasets/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://lincs.hms.harvard.edu/db/datasets/20003" + }, "https://bioregistry.io/schema/#0000029": { - "@value": "ihw" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/GeneDB", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ncbi" + "@value": "hms.lincs.dataset" } }, { - "@id": "https://bartoc.org/en/node/822", + "@id": "https://bioregistry.io/metaregistry/biocontext/FUNCBASE.HUMAN", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bartoc" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/bgee.stage", + "@id": "https://bioregistry.io/metaregistry/rrid/resolve/TSC", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/rrid" } }, { - "@id": "https://bioregistry.io/registry/fsnp", + "@id": "https://bioregistry.io/registry/biocatalogue.service", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification.", + "http://purl.org/dc/terms/description": "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "F-SNP" + "@value": "BioCatalogue Service" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://bioregistry.io/metaregistry/biocontext/FSNP" - }, - { - "@id": "https://registry.identifiers.org/registry/fsnp" + "@id": "https://registry.bio2kg.org/resource/biocatalogue" }, { - "@id": "https://registry.bio2kg.org/resource/fsnp" + "@id": "https://registry.identifiers.org/registry/biocatalogue.service" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/fsnp" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "protein" + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOCATALOGUE.SERVICE" }, { - "@value": "dna" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biocatalogue.service" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "registry" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://compbio.cs.queensu.ca/F-SNP/" + "@id": "https://www.biocatalogue.org/" }, - "https://bioregistry.io/schema/#0000005": "rs17852708", - "https://bioregistry.io/schema/#0000006": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1", - "https://bioregistry.io/schema/#0000008": "^rs\\d+$", + "https://bioregistry.io/schema/#0000005": "614", + "https://bioregistry.io/schema/#0000006": "https://www.biocatalogue.org/services/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=", + "https://bioregistry.io/schema/#0000024": "https://www.biocatalogue.org/services/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=rs17852708" + "@id": "https://www.biocatalogue.org/services/614" }, "https://bioregistry.io/schema/#0000029": { - "@value": "fsnp" + "@value": "biocatalogue.service" } }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/ligandexpo", + "@id": "http://aber-owl.net/ontology/ROLEO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/VHOG", + "@id": "https://orcid.org/0000-0002-3684-0031", + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Li-San Wang" + }, + "http://xmlns.com/foaf/0.1/mbox": { + "@value": "dashr@lisanwanglab.org" + } + }, + { + "@id": "https://registry.bio2kg.org/resource/come", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://fairsharing.org/FAIRsharing.ge8y23", + "@id": "http://aber-owl.net/ontology/RDFS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/aberowl" + } + }, + { + "@id": "https://www.ebi.ac.uk/ols4/ontologies/exo", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/ols" + } + }, + { + "@id": "https://fairsharing.org/FAIRsharing.fex4c8", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/registry/zfin", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/biominder", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/n2t" + } + }, + { + "@id": "https://bioregistry.io/registry/fcb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.", + "http://purl.org/dc/terms/description": "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).\n\n", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Zebrafish Information Network Gene" + "@value": "the FAIR Cookbook" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": { + "@id": "https://registry.identifiers.org/registry/fcb" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://w3id.org" + }, + "https://bioregistry.io/schema/#0000005": "FCB005", + "https://bioregistry.io/schema/#0000006": "https://w3id.org/faircookbook/$1", + "https://bioregistry.io/schema/#0000008": "^FCB\\d{3}$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://w3id.org/faircookbook/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://w3id.org/faircookbook/FCB005" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "fcb" + } + }, + { + "@id": "https://bioregistry.io/registry/obcs", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/obcs/obcs" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Ontology of Biological and Clinical Statistics" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://registry.identifiers.org/registry/zfin" - }, - { - "@id": "https://bioregistry.io/metaregistry/rrid/resolve/ZIRC" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.ybxnhg" - }, - { - "@id": "https://www.uniprot.org/database/DB-0113" - }, - { - "@id": "https://bioregistry.io/metaregistry/ncbi/resolve/ZFIN" + "@id": "https://bioportal.bioontology.org/ontologies/OBCS" }, { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/zfin" + "@id": "https://bioregistry.io/metaregistry/biocontext/OBCS" }, { - "@id": "https://www.re3data.org/repository/r3d100010421" + "@id": "https://fairsharing.org/FAIRsharing.5p12xh" }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/ZFIN" + "@id": "https://www.obofoundry.org/ontology/obcs" }, { - "@id": "https://registry.bio2kg.org/resource/zfin" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/obcs" }, { - "@id": "https://bioregistry.io/metaregistry/go/resolve/ZFIN" + "@id": "http://aber-owl.net/ontology/OBCS" }, { - "@id": "http://www.wikidata.org/entity/P3870" + "@id": "http://www.ontobee.org/ontology/OBCS" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "embryo" - }, - { - "@value": "animal physiology" - }, - { - "@value": "genomics" - }, - { - "@value": "expressed sequence tag" - }, - { - "@value": "research" - }, - { - "@value": "antibody" - }, - { - "@value": "genetics" - }, - { - "@value": "adult" - }, - { - "@value": "fish" - }, - { - "@value": "zebrafish line" + "@value": "obo" }, { - "@value": "genome" + "@value": "biology" }, { - "@value": "cdna" + "@value": "medicine" }, { - "@value": "developmental biology" + "@value": "medical informatics" }, { - "@value": "pathology" + "@value": "ontology" }, { - "@value": "gene" + "@value": "biomedical science" }, { - "@value": "zebrafish" + "@value": "statistics" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://zfin.org" + "@id": "https://github.com/obcs/obcs" + }, + "https://bioregistry.io/schema/#0000005": "0000121", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/OBCS_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "http://purl.obolibrary.org/obo/obcs.owl" }, - "https://bioregistry.io/schema/#0000005": "ZDB-GENE-041118-11", - "https://bioregistry.io/schema/#0000006": "http://zfin.org/$1", - "https://bioregistry.io/schema/#0000008": "^ZDB\\-\\w+\\-\\d+\\-\\d+$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0001-5831-7439" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "ZFIN" + "@id": "https://orcid.org/0000-0002-2999-0103" }, - "https://bioregistry.io/schema/#0000024": "http://zfin.org/", + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/OBCS_", "https://bioregistry.io/schema/#0000027": { - "@id": "http://zfin.org/ZDB-GENE-041118-11" + "@id": "http://purl.obolibrary.org/obo/OBCS_0000121" }, "https://bioregistry.io/schema/#0000029": { - "@value": "zfin" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100011373", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" + "@value": "obcs" } }, { - "@id": "https://www.uniprot.org/database/DB-0185", + "@id": "https://registry.bio2kg.org/resource/wikipathways", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/uniprot" + "@id": "https://bioregistry.io/metaregistry/prefixcommons" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/TGMA", + "@id": "https://bioportal.bioontology.org/ontologies/OPL", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://bioregistry.io/registry/vega", - "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes.", + "@id": "http://aber-owl.net/ontology/NEMO", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioregistry" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Vertebrate Genome Annotation Database" - }, - "http://www.w3.org/2004/02/skos/core#exactMatch": [ - { - "@id": "https://registry.bio2kg.org/resource/vega" - }, - { - "@id": "https://www.re3data.org/repository/r3d100012575" - }, - { - "@id": "https://fairsharing.org/FAIRsharing.mr293q" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "life science" - }, - { - "@value": "genome" - } - ], - "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://vega.archive.ensembl.org/index.html" - }, - "https://bioregistry.io/schema/#0000005": "OTTHUMG00000169812", - "https://bioregistry.io/schema/#0000006": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0003-0338-3070" - }, - "https://bioregistry.io/schema/#0000023": { - "@value": "VEGA" - }, - "https://bioregistry.io/schema/#0000024": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=", - "https://bioregistry.io/schema/#0000027": { - "@id": "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=OTTHUMG00000169812" - }, - "https://bioregistry.io/schema/#0000029": { - "@value": "vega" + "@id": "https://bioregistry.io/metaregistry/aberowl" } }, { - "@id": "http://www.wikidata.org/entity/P661", + "@id": "https://registry.identifiers.org/registry/euclinicaltrials", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/wikidata" + "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/registry/webelements", + "@id": "https://bioregistry.io/registry/worldavatar.compchem", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "Browser for the periodic table of the elements", + "http://purl.org/dc/terms/description": "Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Web Elements" + "@value": "Computational Chemistry Ontology" }, "http://www.w3.org/ns/dcat#keyword": { - "@value": "chemistry" + "@value": "ontology" }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.webelements.com/" + "@id": "https://como.ceb.cam.ac.uk/preprints/223/" }, - "https://bioregistry.io/schema/#0000005": "chromium", - "https://bioregistry.io/schema/#0000006": "https://www.webelements.com/$1", - "https://bioregistry.io/schema/#0000008": "^\\w+$", - "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000024": "https://www.webelements.com/", - "https://bioregistry.io/schema/#0000027": { - "@id": "https://www.webelements.com/chromium" + "https://bioregistry.io/schema/#0000010": { + "@id": "http://www.theworldavatar.com/ontology/ontocompchem/ontocompchem.owl" }, + "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000029": { - "@value": "webelements" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/symptom", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" + "@value": "worldavatar.compchem" } }, { - "@id": "https://registry.identifiers.org/registry/clinicaltrials", + "@id": "https://bioportal.bioontology.org/ontologies/TGMA", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/miriam" + "@id": "https://bioregistry.io/metaregistry/bioportal" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/mfmo", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hprd", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://bioregistry.io/registry/pubchem", - "http://purl.org/dc/terms/hasPart": [ - { - "@id": "https://bioregistry.io/registry/pubchem.classification" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.bioassay" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.substance" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.cell" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.compound" - }, - { - "@id": "https://bioregistry.io/registry/pubchem.element" - } - ] - }, - { - "@id": "https://bioregistry.io/registry/icd9cm", + "@id": "https://bioregistry.io/registry/idocovid19", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States.", + "http://purl.org/dc/terms/description": "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" + }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "International Classification of Diseases, 9th Revision, Clinical Modification" + "@value": "The COVID-19 Infectious Disease Ontology" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.10zsxb" - }, - { - "@id": "http://www.wikidata.org/entity/P1692" - }, - { - "@id": "http://aber-owl.net/ontology/ICD9CM" - }, - { - "@id": "http://oid-info.com/get/2.16.840.1.113883.6.2" - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICD9CM" - } - ], - "http://www.w3.org/ns/dcat#keyword": [ - { - "@value": "epidemiology" - }, - { - "@value": "biomedical science" - }, - { - "@value": "health science" - }, - { - "@value": "medicine" + "@id": "https://www.ebi.ac.uk/ols4/ontologies/idocovid19" }, { - "@value": "preclinical studies" + "@id": "https://bioportal.bioontology.org/ontologies/IDO-COVID-19" }, { - "@value": "ontology" + "@id": "http://aber-owl.net/ontology/IDO-COVID-19" } ], + "http://www.w3.org/ns/dcat#keyword": { + "@value": "ontology" + }, "http://xmlns.com/foaf/0.1/homepage": { - "@id": "https://www.cdc.gov/nchs/icd/icd9cm.htm" + "@id": "https://github.com/infectious-disease-ontology-extensions/ido-covid-19" + }, + "https://bioregistry.io/schema/#0000005": "0001191", + "https://bioregistry.io/schema/#0000006": "http://purl.obolibrary.org/obo/COVIDO_$1", + "https://bioregistry.io/schema/#0000008": "^\\d{7}$", + "https://bioregistry.io/schema/#0000010": { + "@id": "https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-covid-19/master/ontology/ido%20covid-19" }, - "https://bioregistry.io/schema/#0000005": "784", - "https://bioregistry.io/schema/#0000006": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1", - "https://bioregistry.io/schema/#0000008": "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$", "https://bioregistry.io/schema/#0000012": false, "https://bioregistry.io/schema/#0000019": { - "@id": "_:Nf2b505d63be24469901c6814285d166b" + "@id": "https://orcid.org/0000-0002-1118-1738" }, - "https://bioregistry.io/schema/#0000023": [ - { - "@value": "ICD9CM_2005" - }, - { - "@value": "ICD9CM_2006" - }, + "https://bioregistry.io/schema/#0000024": "http://purl.obolibrary.org/obo/COVIDO_", + "https://bioregistry.io/schema/#0000027": { + "@id": "http://purl.obolibrary.org/obo/COVIDO_0001191" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "idocovid19" + } + }, + { + "@id": "https://bioregistry.io/registry/wikigenes", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "WikiGenes" + }, + "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@value": "ICDCM_2005" + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/wikigenes" }, { - "@value": "ICD9CM" + "@id": "https://registry.identifiers.org/registry/wikigenes" }, { - "@value": "IC9CM" + "@id": "https://bioregistry.io/metaregistry/biocontext/WIKIGENES" } ], - "https://bioregistry.io/schema/#0000024": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=", + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "http://www.wikigenes.org/" + }, + "https://bioregistry.io/schema/#0000005": "3771877", + "https://bioregistry.io/schema/#0000006": "http://www.wikigenes.org/e/gene/e/$1.html", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000011": { + "@id": "https://bioregistry.io/registry/ncbigene" + }, + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000024": "https://bioregistry.io/wikigenes:", "https://bioregistry.io/schema/#0000027": { - "@id": "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=784" + "@id": "http://www.wikigenes.org/e/gene/e/3771877.html" }, "https://bioregistry.io/schema/#0000029": { - "@value": "icd9cm" + "@value": "wikigenes" } }, { - "@id": "_:Nf2b505d63be24469901c6814285d166b", - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Patricia Brooks" - }, - "http://xmlns.com/foaf/0.1/mbox": { - "@value": "pbrooks@hcfa.gov" + "@id": "https://bioregistry.io/metaregistry/go/resolve/MEROPS", + "http://purl.org/dc/terms/isPartOf": { + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://registry.identifiers.org/registry/zfin", + "@id": "https://registry.identifiers.org/registry/maxo", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/KEGG.ENVIRON", + "@id": "https://bioregistry.io/metaregistry/biocontext/DEV.GA4GHDOS", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/VARIO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.re3data.org/repository/r3d100013816", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/re3data" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CMO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/emap", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/mirex", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://registry.identifiers.org/registry/metlin", + "@id": "https://registry.identifiers.org/registry/kegg.genes", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/miriam" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/TAXONOMY", + "@id": "https://www.obofoundry.org/ontology/nbo", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/metaregistry/obofoundry" } }, { - "@id": "https://fairsharing.org/FAIRsharing.sm90nh", + "@id": "https://fairsharing.org/FAIRsharing.atygwy", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/fairsharing" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/OLATDV", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/ICF", + "@id": "https://bioregistry.io/metaregistry/go/resolve/UniProtKB", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/go" } }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/stato", + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/smpdb", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/ols" + "@id": "https://bioregistry.io/metaregistry/n2t" } }, { - "@id": "https://fairsharing.org/FAIRsharing.x39h5y", + "@id": "https://bioregistry.io/metaregistry/biocontext/BIOMINDER", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/EPO", + "@id": "https://bioregistry.io/metaregistry/biocontext/ASIN", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioportal.bioontology.org/ontologies/HSAPDV", + "@id": "https://bioregistry.io/metaregistry/biocontext/MP", "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" + "@id": "https://bioregistry.io/metaregistry/biocontext" } }, { - "@id": "https://bioregistry.io/metaregistry/biocontext/GXA.GENE", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@id": "https://bioregistry.io/registry/sharkipedia.trait", + "@type": "https://bioregistry.io/schema/#0000001", + "http://purl.org/dc/terms/description": "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone.", + "http://purl.org/dc/terms/isPartOf": [ + { + "@id": "https://bioregistry.io/registry/sharkipedia" + }, + { + "@id": "https://bioregistry.io/metaregistry/bioregistry" + } + ], + "http://usefulinc.com/ns/doap#GitRepository": { + "@id": "https://github.com/sharkipedia/sharkipedia" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Sharkipedia Trait" + }, + "http://xmlns.com/foaf/0.1/homepage": { + "@id": "https://www.sharkipedia.org/" + }, + "https://bioregistry.io/schema/#0000005": "13", + "https://bioregistry.io/schema/#0000006": "https://www.sharkipedia.org/traits/$1", + "https://bioregistry.io/schema/#0000008": "^\\d+$", + "https://bioregistry.io/schema/#0000012": false, + "https://bioregistry.io/schema/#0000019": { + "@id": "https://orcid.org/0000-0003-1710-8256" + }, + "https://bioregistry.io/schema/#0000021": { + "@id": "https://orcid.org/0000-0003-4423-4370" + }, + "https://bioregistry.io/schema/#0000024": "https://www.sharkipedia.org/traits/", + "https://bioregistry.io/schema/#0000027": { + "@id": "https://www.sharkipedia.org/traits/13" + }, + "https://bioregistry.io/schema/#0000029": { + "@value": "sharkipedia.trait" } }, { - "@id": "https://bioregistry.io/registry/cmpo", + "@id": "https://bioregistry.io/registry/hmdb", "@type": "https://bioregistry.io/schema/#0000001", - "http://purl.org/dc/terms/description": "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations.", + "http://purl.org/dc/terms/description": "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.", "http://purl.org/dc/terms/isPartOf": { "@id": "https://bioregistry.io/metaregistry/bioregistry" }, - "http://usefulinc.com/ns/doap#GitRepository": { - "@id": "https://github.com/EBISPOT/CMPO" - }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Cellular Microscopy Phenotype Ontology" + "@value": "Human Metabolome Database" }, "http://www.w3.org/2004/02/skos/core#exactMatch": [ { - "@id": "https://fairsharing.org/FAIRsharing.knp11s" + "@id": "http://edamontology.org/data_2622" }, { - "@id": "https://bioportal.bioontology.org/ontologies/CMPO" + "@id": "https://www.re3data.org/repository/r3d100011285" }, { - "@id": "https://www.ebi.ac.uk/ols4/ontologies/cmpo" + "@id": "https://registry.identifiers.org/registry/hmdb" }, { - "@id": "http://aber-owl.net/ontology/CMPO" + "@id": "https://registry.bio2kg.org/resource/hmdb" + }, + { + "@id": "https://semanticscience.org/resource/CHEMINF_000408" + }, + { + "@id": "https://bioregistry.io/metaregistry/n2t/resolve/hmdb" + }, + { + "@id": "https://bioregistry.io/metaregistry/biocontext/HMDB" + }, + { + "@id": "https://fairsharing.org/FAIRsharing.sye5js" + }, + { + "@id": "http://www.wikidata.org/entity/P2057" } ], "http://www.w3.org/ns/dcat#keyword": [ { - "@value": "ontology" + "@value": "molecular biology" }, { - "@value": "cell biology" + "@value": "omics" + }, + { + "@value": "biochemistry" + }, + { + "@value": "human" + }, + { + "@value": "phenomics" + }, + { + "@value": "chemical" + }, + { + "@value": "metabolomics" + }, + { + "@value": "bioinformatics" + }, + { + "@value": "life science" + }, + { + "@value": "proteomics" + }, + { + "@value": "metabolite" } ], "http://xmlns.com/foaf/0.1/homepage": { - "@id": "http://www.ebi.ac.uk/cmpo" - }, - "https://bioregistry.io/schema/#0000005": "0000435", - "https://bioregistry.io/schema/#0000006": "http://www.ebi.ac.uk/cmpo/CMPO_$1", - "https://bioregistry.io/schema/#0000008": "^\\d{7}$", - "https://bioregistry.io/schema/#0000010": { - "@id": "http://www.ebi.ac.uk/cmpo/releases/2017-12-19/cmpo.owl" + "@id": "http://www.hmdb.ca/" }, + "https://bioregistry.io/schema/#0000005": "HMDB00001", + "https://bioregistry.io/schema/#0000006": "http://www.hmdb.ca/metabolites/$1", + "https://bioregistry.io/schema/#0000008": "^HMDB\\d+$", "https://bioregistry.io/schema/#0000012": false, - "https://bioregistry.io/schema/#0000019": { - "@id": "https://orcid.org/0000-0002-0643-3144" + "https://bioregistry.io/schema/#0000023": { + "@value": "HMDB" }, - "https://bioregistry.io/schema/#0000024": "http://www.ebi.ac.uk/cmpo/CMPO_", + "https://bioregistry.io/schema/#0000024": "http://www.hmdb.ca/metabolites/", "https://bioregistry.io/schema/#0000027": { - "@id": "http://www.ebi.ac.uk/cmpo/CMPO_0000435" + "@id": "http://www.hmdb.ca/metabolites/HMDB00001" }, "https://bioregistry.io/schema/#0000029": { - "@value": "cmpo" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/nasc", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://registry.bio2kg.org/resource/dip", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/prefixcommons" - } - }, - { - "@id": "https://bioportal.bioontology.org/ontologies/CHIRO", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/bioportal" - } - }, - { - "@id": "https://fairsharing.org/FAIRsharing.8qzmtr", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/fairsharing" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/yid", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/n2t/resolve/doqcs.model", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/n2t" - } - }, - { - "@id": "https://bioregistry.io/metaregistry/biocontext/SUBTILIST", - "http://purl.org/dc/terms/isPartOf": { - "@id": "https://bioregistry.io/metaregistry/biocontext" + "@value": "hmdb" } } ] diff --git a/exports/rdf/bioregistry.nt b/exports/rdf/bioregistry.nt index d76e8a922..8331bf53a 100644 --- a/exports/rdf/bioregistry.nt +++ b/exports/rdf/bioregistry.nt @@ -1,48585 +1,48601 @@ - "0000ffeb-36e0-4a29-b21d-84423bda979d"^^ . - . - "genome" . - "^[a-z]+/[0-9]+$"^^ . - . - . - . - . - . - . - "https://gpcrdb.org/protein/$1"^^ . - "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase."^^ . - . - . - "life science" . - . - . - "^\\d*$"^^ . - "plant genetics" . - . - . - "Maxwell L. Neal" . - . - "bel" . - . - . - . - "http://purl.obolibrary.org/obo/DINTO_$1"^^ . - "https://morpheus.gitlab.io/models/"^^ . - . - . - "Amazon Standard Identification Number" . - . - "Database of Sequence Tagged Sites" . - . - "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc."^^ . - . - . - . - . - . - . - . - . - . - "life science" . - "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."^^ . - . - . - . - . - . - "neuronames" . - . - . - . - . - "ontology" . - "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. "^^ . - . - "https://scicrunch.org/resolver/RRID:IMSR_TAC_"^^ . - . - . - . - . - . - . - . - "^[A-Za-z0-9]+$"^^ . - "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"^^ . - "0000198"^^ . - . - . - . - . - "COlleCtion of Open Natural ProdUcTs" . - . - . - . - "subject agnostic" . - "^\\d{7}$"^^ . - . - . - "^(STUDY|FILE|DATASET)\\d+$"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_chem_"^^ . - . - . - "NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system."^^ . - . - . - "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . - . - . - "false"^^ . - . - . - . - . - . - "edam" . - . - "^AB\\d+$"^^ . - "Mass spectrometry ontology" . - . - . - . - . - . - "egon.willighagen@gmail.com" . - "false"^^ . - . - "EAWAG Biocatalysis/Biodegradation Database" . - . - . - . - . - "annika.jahnke-bornemann@uni-hamburg.de" . - "https://w3id.org/reproduceme#"^^ . - . - "false"^^ . - . - . - "https://www.datascienceontology.org/concept/$1"^^ . - . - "http://rdfs.org/ns/void#$1"^^ . -_:N8ef12b59b027479eb344e1d2a05132be "Tim Vandermeersch" . - . - . - . - "http://purl.obolibrary.org/obo/AEON_$1"^^ . - . - . - . - "e0333"^^ . - . - "snornabase" . - "mass spectrometry" . - "genomics" . - . - . - . - "Manually curated collections of resources stored in the bioregistry"^^ . - "^\\d{7}$"^^ . - "^\\d+$"^^ . - . - . - "https://bioregistry.io/phosphopoint.kinase:"^^ . - . - . - "john.garavelli@ebi.ac.uk" . - . - . - "ontology" . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/HAO_$1"^^ . - . - . - . - . - . - . - . - "ybradford@zfin.org" . - "noncodev3" . - . - "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." . - "false"^^ . - . - . - "5"^^ . - . - . - "STOREDB at University of Cambridge" . - "https://hl7.org/fhir/us/$1"^^ . - . - "627"^^ . - . - . - "Broad Fungal Genome Initiative" . - . - . - "false"^^ . - "MeDRA" . - . - . - "issaku@noguchi.or.jp" . - "^MIRT\\d{6}$"^^ . - . - . + "semantic web" . + . + "ModelDB concept" . + . + "http://www.radiomics.org/RO/"^^ . + . + . + . + . + "plwhetzel@gmail.com" . + "MGD" . + "^\\d+$"^^ . + "^MCDS_S_[a-zA-Z0-9]{1,10}$"^^ . + . + . + "GCF_000005845.2"^^ . + . + . + "pathobiochemistry" . + . + . + "immunology" . + . + . + "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells."^^ . + . + . + "^\\d{7}$"^^ . + "protein" . + "unite" . + . + . + "TopFind" . + . + . + . + . + "Unique Ingredient Identifier" . + . + "gene" . + . + . + "embryonic stem cell line" . + "The Arabidopsis Information Resource" . + "https://bioregistry.io/dragondb.allele:"^^ . + "obo" . + "http://bacmap.wishartlab.com/organisms/$1"^^ . + "obo" . + . + "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record."^^ . + . + "UBERON" . + . + . + . + . + . + "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1"^^ . + . + "phylogenetics" . + "false"^^ . + . + . + . + . + . + "http://bigg.ucsd.edu/models/universal/reactions/$1"^^ . + "BIOMD0000000048"^^ . + . + . + "ontology and terminology" . + . + . + . + . + . + . + . + "https://neurovault.org/images/$1"^^ . + . + "http://www.pantherdb.org/panther/family.do?clsAccession="^^ . . - . - . - . - "Unified Medical Language System Concept Unique Identifier" . - . - "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."^^ . - . - "434"^^ . - "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology."^^ . - . - "oma.protein" . - . - "Chickpea ontology" . - . - . - . - "http://purl.obolibrary.org/obo/FOODON_$1"^^ . - . - . - . - . - . - . - . - . - "drug-drug interactions" . - "^\\d+$"^^ . - . - "^[0-9]+$"^^ . - . - "National Drug Data File" . - . - . - "HMS Library of Integrated Network-based Cellular Signatures Antibodies" . - "Phenol-Explorer" . - . - "https://www.yeastgenome.org/locus/$1"^^ . - . - . - . - . - "^GCST\\d{6}\\d*$"^^ . - . - "deepak.unni3@lbl.gov" . - . - . - . - "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"^^ . - "IRCT20080904001199N7"^^ . - . - "zfin" . - "CategorialBibliometricData"^^ . - . - . - "false"^^ . - "Telethon Network of Genetic Biobanks" . - "http://tolweb.org/$1"^^ . - . - "9861/3"^^ . - "gsso" . - . - "^\\w+$"^^ . - . - . - "false"^^ . - . - . - "aclame" . - . - "ontology" . - . - . - . - "life science" . - . - . - "http://purl.obolibrary.org/obo/MIRO_$1"^^ . - "database management" . - . - . - . - . - "https://disprot.org/"^^ . - "Spectral Database for Organic Compounds" . - . - "ISO 15926-14" . - . - . - "protein" . - . - . - "^\\d+$"^^ . - "dna" . - . - . - "hrehm@mgh.harvard.edu" . - . - "http://purl.obolibrary.org/obo/T4FS_"^^ . - . - . - . - . - "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form."^^ . - . - . - "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . - "false"^^ . - . - "life science" . - . - . - . - . - "ecoliwiki" . - . - . - . - "dna" . - . - "Sample processing and separation techniques" . - . - . - . - "false"^^ . - . - . - . - "ensembl.protist" . - . - "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1"^^ . - . - . - "http://phylomedb.org/?seqid=$1"^^ . - "agriculture" . - "bpeters@lji.org" . - . - "https://purl.dataone.org/odo/SALMON_$1"^^ . - . - . - . - . - . - "false"^^ . - . - "preclinical studies" . - "36"^^ . - . - "Issaku Yamada" . - . - "metascience" . - . - . - "Gene Product Information Schema" . - . - . - . - "MGYA00002270"^^ . - "^e\\d+$"^^ . - . - "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database."^^ . - . - . - . - "molecule" . - "http://purl.obolibrary.org/obo/ICEO_"^^ . - "^\\d+$"^^ . - . - . - . - "ark" . - "false"^^ . - . - "http://ddinter.scbdd.com/ddinter/drug-detail/$1"^^ . - "^\\d+/.+$"^^ . - . - "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system."^^ . - "^\\d+$"^^ . - . - . - . - "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation."^^ . - . - "GPIb_IX_V"^^ . - . - . - . - . - . - . - . - "https://bioregistry.io/cghdb:"^^ . - . - . - "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$"^^ . - . - . - . - "life science" . - "Gene Normal Tissue Expression" . - . - . - . - "allele" . - . - . - "ontology" . - . - . - "MMAR_2462"^^ . - "molecular biology" . - . - "002804"^^ . - . - "fisheries science" . - "Philip Strömert" . - . - . - "http://purl.obolibrary.org/obo/OBIB_"^^ . - . - "metanetx.reaction" . - "ChemBank" . - "false"^^ . - . - . - "Registry of programming languages for the Linguist program for detecting and highlighting programming languages."^^ . - "false"^^ . - "obo" . - "ontology" . - . - . - "protein" . -_:Nf22035a46e7c43d2b632a2ab5a697c5e "slarson@ncmir.ucsd.edu" . - . - . - . - . - . - "A database-specific registry supporting curation in the Gene Ontology"^^ . - . - . - . - . - . - . - "genomics" . - "life science" . - "iNaturalist User" . - "^\\d+$"^^ . - "0000054"^^ . - "goldbook" . - . - . - . - . - . - . - "agriculture" . - . - "genetic resource" . - . - "Maize ontology" . - "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid="^^ . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/PATO_$1"^^ . - . - "GrassBase" . - . - "false"^^ . - . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/VIDO_"^^ . + . + . + . + . + . + "obo" . + "life science" . + "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"^^ . + . + . + . + "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1"^^ . + . + . + . + "elvira@imbb.forth.gr" . + "https://pubchem.ncbi.nlm.nih.gov/cell/"^^ . + "ontology" . + . + "aism" . + . + . + "ExO" . + . + "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits."^^ . + . + . + "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1"^^ . + . + . + . + . + "jesper.friis@sintef.no" . + . + "biomaterial supply resource" . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities."^^ . + . + . + . + . + . + . + "https://www.uniprot.org/journals/$1"^^ . + . + . + "BRAF"^^ . + . + "genomics" . + . + . + . + . + . + . + . + . + "false"^^ . + . + "^[AEP]-\\w{4}-\\d+$"^^ . + "http://purl.obolibrary.org/obo/CIO_$1"^^ . + . + . + "https://w3id.org/sssom/"^^ . + . + . + . + "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1"^^ . + . + . + . + . + . + . + . + . + . + "http://degradome.uniovi.es/cgi-bin/protease/"^^ . + . + "PhylomeDB" . + . + "^A_\\d+_.+$"^^ . + "HUMAN16963"^^ . + . + "https://www.kegg.jp/entry/$1"^^ . + . + "obo" . + "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" . + "https://cropontology.org/rdf/CO_370:"^^ . + . + . + . + "http://purl.obolibrary.org/obo/OBIB_$1"^^ . + "https://www.uniprot.org/proteomes/"^^ . + . + "OASIS Open Services for Lifecycle Collaboration Core Vocabulary" . + "GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability."^^ . + "0000080"^^ . + "natural producs" . + . + . + . + . + "decimal"^^ . + . + "zp" . + . + . + "^\\d{9,9}$"^^ . + "https://zenodo.org/record/$1"^^ . + . + . + . + "http://birdgenenames.org/cgnc/GeneReport?id="^^ . + . + . + . + . + "FullySpecifiedAtom"^^ . + "Codon Usage Tabulated from GenBank" . + "false"^^ . + . + "http://www.w3.org/2001/XMLSchema#$1"^^ . + "^\\d+$"^^ . + . + . + "Christopher Baker" . + . + . + . + "Orthology Ontology" . + . + . + . + . + . + "UM-BBD_pathwayID" . + . + "computer science" . + . + . + . + "small molecule" . + . + . + "MMs00000001"^^ . + "https://bioregistry.io/collection/"^^ . + . + . + . +_:N81e62e4253624b5f99ab3c6a630b2315 "Crop Ontology Helpdesk" . + . + . + "The Drug-Drug Interactions Ontology" . + "biomedical science" . + . + . + "false"^^ . + "bioregistry" . + . + . + . + . + "pesticides" . + . + . + . + . + . + "false"^^ . + "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1"^^ . + . + "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"^^ . + . + "mir" . + . + . + "false"^^ . + "protein" . + . + . + . + . + . + . + . + . + "false"^^ . + "intact.molecule" . + . + . + . + . + . + "dna" . + "http://www.proteinatlas.org/$1"^^ . + . + . + "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."^^ . + . + . + . + "Database of Genotypes and Phenotypes" . + . + "molecular biology" . + . + . + . + . + . + "version Dec 2019"^^ . + . + . + . + . + "microbiology" . + . + . + "^A[A-Z]+\\d+$"^^ . + . + "^\\w+$"^^ . + . + . + . + . + . + . + . + . + "mKIAA4200"^^ . + "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1"^^ . + "tctr" . + "Protein Structural Change Database" . + "gateway" . + . + . + . + "bdgp.insertion" . + . + "75121530"^^ . + . + . + . + . + . + . + . + "http://www.obofoundry.org/" . + . + "^GPM\\d+$"^^ . + . + "http://viroligo.okstate.edu/main.php?vid="^^ . + . + . + . + "Vertebrate Gene Nomenclature Committee" . + "https://www.webelements.com/$1"^^ . + . + . + . + "Maciej.Antczak@cs.put.poznan.pl" . + "true"^^ . + . + "life science" . + . + . + . + "nif.cell" . + . + "UP000005640"^^ . + "http://purl.obolibrary.org/obo/SWO_"^^ . + . + . + . + . + "false"^^ . + . + . + "https://www.webofscience.com/wos/woscc/full-record/WOS:$1"^^ . + . + "^\\d+$"^^ . + . + . + "genome" . + . + "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases"^^ . + "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC."^^ . + . + . + "Immune Epitope Database" . + . + . + "false"^^ . + . + . + "clinvar.submission" . + . + . + "co_357" . + "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life."^^ . + . + "https://www.enzolifesciences.com/$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/ADO_$1"^^ . + . + . + . + . + "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies."^^ . + . + "environmental science" . + . + "https://biopragmatics.github.io/providers/uniprot.ptm/"^^ . + "ped.ensemble" . + . . - "http://purl.obolibrary.org/obo/EHDA_$1"^^ . - . - . - . - "biochemistry" . - . - "small molecule" . - . - "false"^^ . - . - . - . - . - "life science" . - "bgee.gene" . - "systems biology" . - . - . - "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition."^^ . - . - "https://pubchem.ncbi.nlm.nih.gov/compound/$1"^^ . - . - . - . - . - . - . - . - "ontology" . - "obo" . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l="^^ . - "clinical studies" . - "polbase" . - . - "http://bioportal.bioontology.org/ontologies/"^^ . - . - . - . - "https://www.deciphergenomics.org/syndrome/$1"^^ . - . - . - . - . - . - "https://doulix.com/constructs/$1"^^ . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid="^^ . - . - "https://www.gwascentral.org/marker/$1"^^ . - . - "RL3R1_HUMAN"^^ . - . - . - "Ontology for Parasite LifeCycle" . - "CDC2"^^ . - "https://civicdb.org/links/drugs/"^^ . - . - . - "BG11523"^^ . - . - . - . - . - . - "life science" . - . - "botany" . - . - "multicellds" . - "National Academic Research and Collaborations Information System" . - . - . - "gene" . - . - . - . - "ontology" . - "genomics" . - . - "neurology" . - "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs."^^ . - "http://mirbase.org/cgi-bin/mature.pl?mature_acc="^^ . - "PubChem Cell Line" . - . - . - . - . - "http://purl.bioontology.org/ontology/VANDF/$1"^^ . - "https://cropontology.org/rdf/CO_341:"^^ . - . - . - "ontology" . - "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/"^^ . - . - . - "CHEBIID" . - . - . - . - . - "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_="^^ . - . - . - "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species."^^ . - . - . - . - "wikidata" . - "The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan."^^ . - . - . - . - "0000127"^^ . - . - "false"^^ . - "comparative genomics" . - "gdsc" . - "John Westbrook" . - . - . - . - . - . - "hc.trial" . - . - "https://www.ebi.ac.uk/biostudies/studies/$1"^^ . - "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities."^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/FOVT_"^^ . - . - "https://www.ncbi.nlm.nih.gov/gene/"^^ . - . - . - . - . - "animal model" . - "estdab" . - . - "health" . - . - "^[1-9]\\d{0,5}$"^^ . - . - . - "NCI Metathesaurus" . - . - "life science" . - . - . - "Plasmodium Life Cycle" . - "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."^^ . - "has local unique identifier example" . - "pathway" . - . - . - "false"^^ . - . - . - . - "ADM1"^^ . - "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1"^^ . - "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/"^^ . - . - . - . - . - "true"^^ . - "false"^^ . - "H-InvDb Protein" . - . - "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information."^^ . - . - . - . - "BioModels Database" . - . - . - "^\\d{7}$"^^ . - . - "structure" . - . - "obo" . - "https://www.internationalgenome.org/data-portal/sample/$1"^^ . - "mcc" . - . - . - . - "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)."^^ . - . - . - . - "http://metlin.scripps.edu/metabo_info.php?molid="^^ . - "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones."^^ . - "PTPN1"^^ . - "obo" . - . - . - . - "http://purl.obolibrary.org/obo/SYMP_"^^ . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - "Adnan Malik" . - "ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States."^^ . - "obo" . - . - . - . - . - . - "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."^^ . - . - "Protein Ensemble Database" . - "preclinical studies" . - . - . - . -_:Nc287de27a14b496ea3776eeac440e444 "Heinrich Herre" . - . - . - . - . - . -_:N6afd81d0b18c4d788763e7e1cf916125 "World Health Organization" . - . - . + "ClinVar Submission" . + . + . + . + "ligandbox" . + "Li7"^^ . + "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA."^^ . + "https://urgi.versailles.inra.fr/gnpis/#result/term="^^ . + . + "^RC\\d+$"^^ . + "humIGHV025"^^ . + "false"^^ . + . + "false"^^ . + . + . + . + "false"^^ . + . + "vega" . + "78073"^^ . + . + . + "A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods"^^ . + . + "A0014"^^ . + . + . + "genome" . + . + "000017"^^ . + . + "msaier@ucsd.edu" . + . + . + "regulation" . + "ontology" . + . + "http://opendata.inra.fr/ATOL/ATOL_"^^ . + . + "glida.gpcr" . + "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID="^^ . + . + "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . + . + "^\\w+$"^^ . + . + . + . + . + "http://exac.broadinstitute.org/variant/"^^ . + . + . + . + . + . + "https://prefix.cc/" . + "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease."^^ . + . + "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^ . + . + "disease" . + "matthias.samwald@meduniwien.ac.at" . + . + . + . + . + . + . + "^\\d{7}$"^^ . + "genome" . + " http://edamontology.org" . + . + "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1"^^ . + . + . + . + . + . + . + . + "dna" . + . + "false"^^ . + . + "5ede4273-b26c-4ea4-adb7-3ce294ab3397"^^ . + . + . + . + . + "transcriptomics" . + "sharkipedia.trait" . + "c4o" . + "artificial intelligence" . + . + . + . + . + . + . + "uc001rvw.5"^^ . + . "https://glycopost.glycosmos.org/entry/$1"^^ . - . - . - "true"^^ . - . - . - . - "ontology" . - . - "^[0-9]*$"^^ . - . - . - . - . - . - . - . - . - "https://pk-db.com/data/$1"^^ . - "MOSAiC Ontology" . - . - "ontology" . - "HGNC Gene Group" . - . - "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$"^^ . - "ACTRN12623000498695"^^ . - . - . - . - . - "Clinical Trial Registries" . - "cath" . - "false"^^ . - . - "assays" . - . - . - "0000319"^^ . - "liumeng94@sjtu.edu.cn" . - "bioinformatics" . - . - . - "small molecule" . - "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."^^ . - "false"^^ . - . - "false"^^ . - . - . - "^[0-9]{4}$"^^ . - "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)." . - . - . - "https://licebase.org/?q="^^ . - "glycomics" . - . - "http://viaf.org/viaf/$1"^^ . - . - . - . - "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object="^^ . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/CIO_"^^ . - . - "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . - . - . - . - . - "foaf" . - "AKR"^^ . - . - "TR0000001"^^ . - . - . - . - "cheminformatics" . - . - "true"^^ . - . - "OUYCCCASQSFEME-MRVPVSSYSA-N"^^ . - . - . - . - . - . - . - "biomedical science" . - "fao.asfis" . - . - "IPR016380"^^ . - "protein" . - "21393"^^ . - . - . - "^\\d{7}$"^^ . - "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli."^^ . - . - "https://cropontology.org/ontology/$1" . - . - "http://isbndb.com/search-all.html?kw=$1"^^ . - . - "Dublin Core Types" . - "ChEBI" . - . - . - "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1"^^ . - . - "kegg_genomes" . - . - . - . - . - "Human Cell Atlas Ontology" . - "traumatology" . - . - "uniprot.disease" . - "https://schema.org/"^^ . - . - . - . - . - "98346"^^ . - . - . - "https://repo.napdi.org/study/"^^ . - "^\\d+$"^^ . - . - . - "ontology" . - "https://cropontology.org/rdf/CO_358:$1"^^ . - "psychology" . - "false"^^ . - . - . - "^\\w+(\\.\\d+)?(\\.\\d+)?$"^^ . - "miaa" . - . - "RCB0002"^^ . - . - "structural bioinformatcs" . - . - . - . - . - "117"^^ . - "^\\d{7}$"^^ . - . - "Protein Structural Change Database" . - . - "ontology" . - . - . - . - "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest."^^ . - . - . - . - "^\\d+$"^^ . - . - . - . - "Shur-Jen Wang" . - . - . - "http://purl.obolibrary.org/obo/CEPH_$1"^^ . - . - "https://publons.com/publon/"^^ . - "http://www.fao.org/gsfaonline/additives/details.html?id=$1"^^ . - . - . - . - "oncology" . - . - . - "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid="^^ . - . - "^\\d+$"^^ . - . - . - . - . - "faseb list" . - "https://www.rhea-db.org/rhea/$1"^^ . - . - . - "MIRIAM Legacy Registry Identifier" . - . - . - . - "CIViC Variant Group" . - . - . - . - . - "obi" . - . - . - "CY077097"^^ . - . - . - . - "reaxys" . - "fibroblast" . - "pathway" . - . - . - "phylomedb" . - . - . - "^\\d+$"^^ . - . - . - . - . - . - "developmental biology" . - . - . - "1"^^ . - "obo" . - . - "^\\d+$"^^ . - . - . - "Feature Type Thesaurus" . - . - . - . - . - . - "https://fcs-free.org/fcs-database?$1"^^ . - . - . - "JRC Data Catalogue" . - . - . - . - . - "https://bioregistry.io/dragondb.allele:"^^ . - . - . - "https://bioregistry.io/gabi:"^^ . - "Surjeet Kumar Arya" . - . - "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI)."^^ . - . - . - "98034"^^ . - . - "http://oid-info.com/get/"^^ . - "organic chemistry" . - . - "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications."^^ . - "http://purl.obolibrary.org/obo/VT_$1"^^ . - . - "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"^^ . - . - . - . - . - "Maria Taboada" . - . - . - . - . - . - . - . - "https://www.ebi.ac.uk/interpro/set/pfam/$1"^^ . - . - . - . - "structure" . - "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease."^^ . - "Aspergillus Genome Database" . - "http://www.gramene.org/db/ontology/search?id=GRO:"^^ . - . - "ontology" . - "false"^^ . - . - "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$"^^ . - "ontology" . - . - . - . - . - "http://www-snorna.biotoul.fr/plus.php?id="^^ . - "false"^^ . - . - . - "transyt" . - . - "false"^^ . - . - . - "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data."^^ . - . - "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$"^^ . - . - . - . - . - . - "hcvdb" . - "dna" . - . - . - . - . - . - "World Wildlife Fund Ecoregion" . - . - . - . - . - "RE" . - "emmo.cif" . - "FlyBase Qualifiers" . - . - "false"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "sssom" . - . - "http://www.w3.org/2003/11/swrl#$1"^^ . - . - . - . - "1537"^^ . - "immunology" . - . - "Add"^^ . - . - . - "false"^^ . - . - "gene" . - . - . - . - . - . - "Dictyostelium discoideum phenotype ontology" . - "0010316"^^ . - . - . - . - . - "The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]"^^ . - "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups."^^ . - . - "http://vita.mbc.nctu.edu.tw/search.php?acc="^^ . - "Ribocentre is designed to contain comprehensive information of all natural ribozymes."^^ . -_:N5067726a33d144dc8361a944c2151384 "bert.van.nuffelen@tenforce.com" . - . - . - . - . - "http://purl.org/obo/owlEOL_$1"^^ . - . - . - . - "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."^^ . - . - . - "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id="^^ . - . - . - "neuroscience" . - "false"^^ . - . - . - . - . - "https://www.swisslipids.org/#/entity/SLM:"^^ . - . - "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species."^^ . - . - . - . - "Hilmar Lapp" . - . - "false"^^ . - "Richard Boyce" . - "false"^^ . - . - . - "timrobertson100@gmail.com" . - "^\\d{7}$"^^ . - "^FR\\-FCM\\-\\w{4}$"^^ . - . - . - . - . - . - "biomedical science" . - . - . - . - . - "https://www.deciphergenomics.org/syndrome/"^^ . - "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."^^ . - . - "^S\\d+$"^^ . - . - . - . - "https://www.checklistbank.org/dataset/3LR/taxon/"^^ . - . - . - "MESHCS" . - . - "0001998"^^ . - . - . - "Geographical Entity Ontology" . - . - "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1"^^ . - "Name-to-Thing" . - . - "false"^^ . - . - . - "protein" . - . - . - . - . - "structure" . - "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1"^^ . - . - "life science" . - "obo" . - "1000160"^^ . - . - . - "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages."^^ . - . - . - . - "false"^^ . - "life science" . - "19333"^^ . - . - "research" . - . - . - . - . - "http://senselab.med.yale.edu/ORDB/Data/"^^ . - . - . - "000000001"^^ . - . - "kegg.genes" . - "http://biohackathon.org/resource/faldo#$1"^^ . - "Wyeth W. Wasserman" . - "Global Natural Products Social Molecular Networking Task" . - "^[a-z]+(\\..*?)?$"^^ . - "biomedical science" . - "http://purl.obolibrary.org/obo/IAO_"^^ . - . - . - "false"^^ . - . - . - . - "GLDS-141"^^ . - . - "http://multicellds.org/MultiCellDB/"^^ . - . - . - "disease" . - . - . - "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis."^^ . - . - . - . - "biomedical science" . - "http://purl.obolibrary.org/obo/OBI_$1"^^ . - . - "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1"^^ . - "Metabolomics Workbench Study" . - . - "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID="^^ . - . - . - "31253.11.sciencedb.j00001.00123"^^ . - . - . - . - "http://degradome.uniovi.es/cgi-bin/protease/$1"^^ . - . - "epidemiology" . - "transposon" . - "Identifier for a journal article in the fossilworks website"^^ . - "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs."^^ . - . - "http://vocabularies.bridgedb.org/ops#"^^ . - . - . - "1466"^^ . - . - . - . - "biology" . - . - . - . - . - "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them."^^ . - "false"^^ . - "The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems."^^ . - "obo" . - . - . - . - . - "ECMDB00005"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - "Drosophila Phenotype Ontology" . - . - "AllSomeInterpretation"^^ . - . - . - "dlxc" . - . - . - . - . - . - . - . - "genetic analysis" . - "C. elegans ORFeome cloning project" . - "Ontology of Precision Medicine and Investigation" . - "https://glycopost.glycosmos.org/entry/"^^ . - . - . - . - "forest management" . - . - . - "PACTR202304525632216"^^ . - . - "false"^^ . - . - "^\\d+$"^^ . - "^PTM-\\d{4}$"^^ . - "eukaryotic" . - . - . - "VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences."^^ . - . - "Database of experimentally verified IRES structures" . - . - . - . - . - "comparative genomics" . - . - . - "http://purl.obolibrary.org/obo/HABRONATTUS_$1"^^ . - "Shorthand representations of languages and their subtypes"^^ . - . - "http://id.who.int/icd/entity/"^^ . - . - . - . - "live mouse" . - . - "idpo" . - . - "ontology" . - . - "ms" . - . - "http://www.kegg.jp/entry/"^^ . - "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . - "Oral Health and Disease Ontology" . - "https://www.metanetx.org/equa_info/$1"^^ . - "false"^^ . - . - "Germplasm Resources Information Network" . - . - . - . - . - . - . - . - . - . - "Minimum PDDI Information Ontology" . - . - . - . - "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1"^^ . - . - "hsa-let-7a-2-3p"^^ . - "aceview.worm" . - "Structural Database of Allergenic Proteins" . - "bioinformatics" . - . - . - . - "statistics" . - "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)."^^ . - . - "https://www.fao.org/fishery/en/species/$1"^^ . - . - . - "COG Categories" . - "biomedical science" . - . - . - "https://www.signalingpathways.org/datasets/dataset.jsf?doi="^^ . - . - . - . - . - . - . - "life science" . - "^\\d+$"^^ . - . - "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"^^ . - . - "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"^^ . - . - "Sharkipedia Trend" . - . - . - . - . - . - . - . - . - "vbo" . - "^\\d+$"^^ . - . - . - "http://purl.obolibrary.org/obo/ECO_$1"^^ . - "^([a-z]{3,5}_)?M\\d{5}$"^^ . - "bioregistry.collection" . - "http://sabiork.h-its.org/newSearch?q=$1"^^ . - . - "ontology" . - "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes."^^ . - . - . - "hgnc.symbol" . - "kegg.ligand" . - . - . - "Basic Register of Thesauri, Ontologies & Classifications" . - "https://www.sharkipedia.org/species/$1"^^ . - "ohmi" . - "false"^^ . - "^\\d{7}$"^^ . - "https://purl.dataone.org/odo/SASAP_$1"^^ . - . - . - . - . - "Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)"^^ . - . - "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - . - . - . - . - "http://purl.org/dc/elements/1.1/"^^ . - "^[0-9]+$"^^ . - . - . - . - . - "https://viralzone.expasy.org/"^^ . - . - . - . - . - "ontology" . - . - "bork@embl.de" . - "^\\d{7}$"^^ . - "lincs.cell" . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/OPMI_"^^ . - "protein" . - . - . - . - . - "true"^^ . - "Citation Counting and Context Characterisation Ontology" . - . - "pain medicine" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "knockout" . - . - "biology" . - . - "^\\d{7}$"^^ . - . - . - . + "false"^^ . + "https://mobidb.org/"^^ . + "odam" . + . + . + . + "A comprehensive database of\n\nhuman H/ACA and C/D box snoRNAs."^^ . + "hpo" . + "qtldb" . + "false"^^ . + . + . "obo" . - "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG"^^ . - . - . - . - . - . - . - . - "http://qudt.org/schema/qudt#$1"^^ . - "cao" . - "https://www.disprot.org/"^^ . - . - "https://www.nextprot.org/term/FA-$1"^^ . - "^\\d+$"^^ . - . - . - . - . - "obo" . - "SNOMED CT (International Edition)" . - . - "PRIDE Project" . - . - "false"^^ . - "Bactibase" . - "plant anatomy" . + . + . + "biomedical science" . + . + "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession="^^ . + . + . + . + "hathitrust" . + "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms."^^ . + "An alternative or synonymous prefix" . + "^L\\d+$"^^ . + "microbial" . + . + "life science" . + "botany" . . - "0000001"^^ . - "2842"^^ . -_:N4ddba5cc6d3848468da76008f7a33671 "agrovoc@fao.org" . - "https://mobidb.org/$1"^^ . - "^\\d(\\d|\\w)$"^^ . - . - . - "genetics" . - "stock" . - . - "https://books.google.com/books?id="^^ . - . - . - . - . - "http://purl.jp/bio/4/id/"^^ . - "^DRKS\\d+$"^^ . - "^\\d{8}$"^^ . - "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1"^^ . - . - . - . - . - . - "false"^^ . - "^IID\\d+$"^^ . - "cells" . - . - . - . - "false"^^ . - "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID="^^ . - . - . - "neuromorpho" . - "biochemistry" . - . - "Miguel A. Fortuna" . - . - . - . - . - "UCSC Genome Browser" . - . - "utrdb" . - . - "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology."^^ . - . - . - "https://assets.nemoarchive.org/$1"^^ . - . - . - "Akt_PKB"^^ . - "ontology" . - . - "^.*?--%3E.*?$"^^ . - "http://www.coloncanceratlas.org/search_cell_line?cell_line=$1"^^ . - "YeTFasCo" . - . - . - "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)."^^ . - "reagents" . - "^\\d+$"^^ . - . - "obo" . - "Drug_Central" . - "4238"^^ . - . - "biomedical science" . - . - "David Blackburn" . - . - "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)"^^ . - "CiteXplore" . - "ontology" . - . - "cog.category" . - "https://icd.codes/icd10cm/$1"^^ . - . - . - . - "Hazardous Substances Data Bank" . - . - "http://wodaklab.org/iRefWeb/interaction/show/$1"^^ . - . - . - "http://purl.obolibrary.org/obo/NCIT_"^^ . - . - . - . - "https://bioregistry.io/panorama:"^^ . - "duret@biomserv.univ-lyon1.fr" . - . - "^\\d+$"^^ . - . - . - "gamete" . - . - "rna" . - "^\\d+$"^^ . - . - . - . - "http://purl.obolibrary.org/obo/OBI_"^^ . - "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/"^^ . - . - . - . - . - "2244"^^ . - . - . - . - . - "SAMEA2397676"^^ . - "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases."^^ . - "bioinformatics" . - "false"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - "false"^^ . - . -_:Nd772a1887b1e4e43ab904ab8cad89d95 "Michelle Futornick" . - . - . - . - . - "nihhesc" . - . - "mzspec" . - "http://www.co-ode.org/ontologies/galen#$1"^^ . - . - . - . - . - . - "GN_G03681DA"^^ . - . - . - . - "IUPHAR_LIGAND" . - . - . - . - . - "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"^^ . - . - . - "biodiversity" . - "false"^^ . - . - "^\\d{8}$"^^ . - . - "false"^^ . - "http://purl.obolibrary.org/obo/SEP_$1"^^ . - "375364"^^ . - "0000001"^^ . - . - "ontology" . - . - "2023"^^ . - "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/"^^ . - "false"^^ . - "P00747__P07355"^^ . - "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^ . - "https://terminology.hl7.org/CodeSystem-v3-"^^ . - "Brachiaria ontology" . - "genome" . - "biodiversity" . - . - . - . - "http://www.pathwaycommons.org/pc/record2.do?id=$1"^^ . - . - "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB."^^ . - . - . - "Electrocardiogram Ontology" . - . - "http://purl.obolibrary.org/obo/AMPHX_"^^ . - "http://aber-owl.net/ontology/$1" . - "http://purl.obolibrary.org/obo/MAO_$1"^^ . - . - . - . - "false"^^ . - . - "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id="^^ . - . - . - "http://usefulinc.com/ns/doap#"^^ . - . - . - "biomedical science" . - . - . - . - . - . - . - "geno" . - "false"^^ . - . - "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database."^^ . - . - . - . - . - . - . - . - . - "rouge" . - "daniel.c.berrios@nasa.gov" . - "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. "^^ . - . - "structure" . - . - . - "ADH1"^^ . - "life science" . - "anatomy" . - . - "subject agnostic" . - . - "cbioportal" . - . - "dna" . - . - "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1"^^ . - . - . - "ontology" . - "EAWAG Biocatalysis/Biodegradation Database" . - "protein" . - . - "http://www.pathoplant.de/detail.php?accNo=$1"^^ . - "Scientific Event Ontology" . - . - . - . - "false"^^ . - "iclc" . - . - . - . - . - "protein" . - . - "Maria Gould" . - . - . - . - . - . - . - . - . - . - "An anatomical and developmental ontology for ctenophores (Comb Jellies)"^^ . - . - "webelements" . - . - "protein-protein interactions" . - . - "The Virus Infectious Disease Ontology" . - . - . - . - . - . - . - . - . - . - . - . - . - "OTTHUMG00000169812"^^ . - . - . - . - . - "SNOMEDCTCT_2018_03_01" . - . - . - "https://biomedit.ch/rdf/sphn-ontology/sphn#"^^ . - . - "false"^^ . - . - "^[1-9]\\d{0,6}$"^^ . - . - . - . - "The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence."^^ . - . - . - . - "tccd" . - . - . - . - "hsdb" . - . - "http://purl.obolibrary.org/obo/RoleO_"^^ . - . - . - . - . - "arraymap" . - "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally."^^ . - . - "https://w3id.org/mixs/$1"^^ . - "ontology" . - . - . - . - "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world."^^ . - . - . - . - . - "google.book" . - "The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies."^^ . - "false"^^ . - "earth science" . - . - "https://bartoc.org/" . - "dsm-iv" . - "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas."^^ . - . - . - "National Uniform Claim Committee Characteristic" . - . - . - "topdb" . - . - "DDB_G0267522"^^ . - "ontology" . - . - . - . - . - "development" . - . - "false"^^ . - "skos" . - . - . - "meetings" . - "^\\d+$"^^ . - . - . - . - . - "^EBI\\-[0-9]+$"^^ . - . - "bibliography" . - . - . - . - . - "^\\w+(\\.)?\\w+(\\.)?\\w+$"^^ . - . - . - "dna" . - . - "Jonathan Karr" . - "http://vita.mbc.nctu.edu.tw/search.php?acc=$1"^^ . - . - . - "maize" . - "food chemistry" . - . - . - . - . - . - "0000460"^^ . - "adult" . - . - . - . - "go.ref" . - "70"^^ . - . - . - "genome" . - . - "The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public."^^ . - . - "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies."^^ . - . - . - . - "^\\d+$"^^ . - "ebf69ca24298b28b2361e7d43eb52d6c"^^ . - . - . - . + "^T3\\d+$"^^ . + . + . + . + "https://www.thermofisher.com/antibody/product/$1"^^ . + . + . + . + "gene" . + . + . + "https://identifiers.org" . + . + "Pol Castellano Escuder" . + . + "pkdb" . + . + . + . + . + . + . + . + . + . + "Enzo Life Sciences" . + "data management" . + . + . + "false"^^ . + . + "http://purl.obolibrary.org/obo/SIBO_"^^ . . - . - . - . - . - . - . - "http://purl.dataone.org/odo/SENSO_"^^ . - "MEROPS Clan" . - . - . - . - . - . - "HD+118-001"^^ . - . - . - . - "SWISS-MODEL Repository" . - . - "genetics" . - . - . - "true"^^ . - . - . - . - . - "validatordb" . - . - . - "rnamods" . - "microbiology" . - "CNBG_0001"^^ . - "false"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_"^^ . - . - "false"^^ . - "fetal fibroblast" . - "OGI.owl" . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - . - "Influenza Sequence and Epitope Database" . - . - . - "International repository of Adverse Outcome Pathways."^^ . - . - "life science" . - . - . - . - . - . - . - "obo" . - . - . - . - "false"^^ . - . - "https://bacdive.dsmz.de/strain/$1"^^ . - "^\\d{7}$"^^ . - . - "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . - "ontology" . - . - "0000504"^^ . - . - "^\\d{7}$"^^ . - . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/NCRO_$1"^^ . - . - . - . - "http://www.interfil.org/details.php?id=$1"^^ . - . - . - "MaizeGDB is the maize research community's central repository for genetics and genomics information."^^ . - . - . - "SABIO-RK EC Record" . - . - . - . - "gerhard.mayer@rub.de" . - . - "CRW_00469"^^ . - . - . - "chickenqtldb" . - . - . - . - . - . - . + . + . + . + "structure" . + . + . + . + . + "NCBI Probe database Public registry of nucleic acid reagents" . + "biology" . + "Minimum Anformation About a Phylogenetic Analysis Ontology" . + "interaction" . + "false"^^ . + . + "r0001"^^ . + . + "The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.\n\nThe Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:\n\n- [ZFIN](https://zfin.org) - Zebrafish Information Network\n- [WormBase](https://wormbase.org)\n- [MGI](https://www.mgi.org) - Mouse Genome Informatics\n- [RGD](https://rgd.mcw.edu) - Rat Genome Database\n- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database\n- [FlyBase](https://flybase.org)\n- [Xenbase](https://www.xenbase.org)"^^ . + "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid="^^ . + . + . + . + . + "nextprot.family" . + . + "ontology" . + . + . + . + . + . + . + . + . + "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses."^^ . + "biochemistry" . + "ecology" . + "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T"^^ . + . + "surjeet.arya@uky.edu" . + . + . + . + . + "Cuban Registry of Clinical Trials" . + "Simon Cox" . + . + "pao" . + "obo" . + "^\\d+$"^^ . + . + "HL7 External Code Systems are stored within the greater OID system" . + . + "0000780"^^ . + . + "ontology" . + . + . + . + . + "0000121"^^ . + "obo" . + . + "molecular physical chemistry" . + "LNCRNADB" . + "1a05"^^ . + "interaction" . + . + . + . + . + . + "63250"^^ . + . + . + . . - "false"^^ . - "Selventa Complexes" . - . - "false"^^ . - . - . - . - . - . - . - . - "An ontology developed as part of the Chemical Analysis Metadata Project (ChAMP) as a resource to semantically annotate standards developed using the ChAMP platform. (source: CAO ontology)"^^ . - . - . - . - . - . - "^S\\w+(\\.)?\\w+(\\.)?$"^^ . - . - . - . - "uniprot" . - "Ada Hamosh" . - "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics."^^ . - "https://dandiarchive.org/dandiset/"^^ . - "linguistics" . - . - "proteomics" . - . - "FlyBase_Cell_line" . - . - . - . - . - . - . - . - . - . - "interaction" . - "model" . - . - . - "Insertion sequence elements database" . - "STUDY1040"^^ . - "protein" . - "life science" . - "agriculture" . - . - . - "^\\d{7}$"^^ . - . - . - "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1"^^ . - . - . - . - . - "00000"^^ . - "BARC-013845-01256"^^ . - "Ensembl Protists" . - . - "https://www.ensembl.org/id/"^^ . - . - "REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs)."^^ . - . - . - "Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research."^^ . - . - "bmrb.restraint" . - _:Nb3677b93e9364253a0a9a9c51e4ac0c6 . - "genetic material" . - "mondo" . - . - "life science" . - "easychair.cfp" . - "https://cropontology.org/rdf/CO_320:"^^ . - . - . - "radiology" . - . - "MGnify Sample" . - . - "^\\d+$"^^ . - "false"^^ . - . - "Sofia Robb" . - "NHMRC Australian PhenomeBank" . - . - "dsm5" . - . - "glida.gpcr" . - . - . - "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]"^^ . - . - . - . - "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes."^^ . - . - . - . - "^TIGR\\d+$"^^ . - "false"^^ . - . - "structure" . - . - . - "Human developmental anatomy, timed version" . - . - "http://pepbank.mgh.harvard.edu/interactions/details/"^^ . - "REBASE Enzyme Number" . -_:Nb6c39353d8c84018a7010dde85517963 "helpdesk@cropontology-curationtool.org" . - . - "false"^^ . - . - "uniparc" . - . - "cellbank.australia" . - "ontology" . - . - . - "dna" . - "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID="^^ . - "http://multicellds.org/MultiCellDB/"^^ . - "obo" . - . - . - . - "agriculture" . - . - "genome" . - . - . - . - . - . - . - "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."^^ . - "https://eds.gene.le.ac.uk/home.php?select_db=$1"^^ . + . + . + . + "marine ecology" . + . + . + . + . + . + . + . + . + . + . + "HEX1"^^ . + . + . + . + "false"^^ . + "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"^^ . + "^URS[0-9A-F]{10}(\\_\\d+)?$"^^ . + "ontology" . + . + . + "vegbank" . + "https://vocab.org/vann/"^^ . + . + . + "Antibiotic resistance genes and mutations"^^ . + "https://www.kew.org/data/grasses-db/www/"^^ . + "https://cropontology.org/rdf/CO_359:$1"^^ . + "Coronavirus Infectious Disease Ontology" . + . + "Cell line collections (Providers)"^^ . + "cgrove@caltech.edu" . + . + "false"^^ . + . + "^\\d+$"^^ . + . + . + "MAM01234c"^^ . + . + "false"^^ . + "false"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + "Basic Formal Ontology" . + "http://cutdb.burnham.org/relation/show/$1"^^ . + "kegg.orthology" . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + "nmrcv" . + . + . + "COVID-19 Surveillance Ontology" . + "funcbase.yeast" . + . + "Elvira Mitraka" . + . + . + . + . + . + . + "false"^^ . + . + . + . + "^\\d+$"^^ . + . + . + "ucas" . + . + . + . + . + . + "https://bioregistry.io/reo:"^^ . + . + . + . + . + . + "false"^^ . . - . - . - . - . - . - . - . - "AddexBio cell line products" . - . - "Ontology of rat strains"^^ . - . - . - . - "virus" . - . - . - . - "None"^^ . - "^\\d{7}$"^^ . - "rexo" . -_:N040aa6c5b3974c7da6cda302541b8bb3 "po-discuss@plantontology.org" . - "false"^^ . - . - "046"^^ . - . - . - "life science" . - . - "Deepak Unni" . - "http://www.depod.bioss.uni-freiburg.de/showp.php?gene="^^ . - "CharProt" . - . - . - "genome" . - . - . - . - "0000390"^^ . - . - . - . - . - . - . - "reaction" . - "false"^^ . - . - "0005250"^^ . - . - . - . - "dan5@georgetown.edu" . - . - "obo" . - . - . - . - "https://www.disprot.org/idpo/IDPO:$1"^^ . - . - "knowledge and information systems" . - . - . - "^PA\\d+$"^^ . - . - "https://www.ncbi.nlm.nih.gov/genome/$1"^^ . - . - . - . - "https://bioregistry.io/mesh.2012:"^^ . - "https://w3id.org/sssom/$1"^^ . - . - . - . - . - "Feature Annotation Location Description Ontology " . - . - . - . - . - "^TCTR\\d+$"^^ . - . - "Yeast Intron Database v4.3" . - "https://bioregistry.io/cadsr:"^^ . - . - . - . + "human" . + . + "anatomy" . + . + "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical."^^ . + . + . + . + . + "https://fungi.ensembl.org/id/$1"^^ . + "human" . + "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1"^^ . + . + . + . + . + "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks."^^ . + . . - "Paragraph"^^ . - "emsl.project" . - . - . - . - . - . - . - . - "http://www.whocc.no/atcvet/atcvet_index/?code="^^ . - "^\\d{7}$"^^ . - . - . - "^[A-Z0-9]+$"^^ . - "1250"^^ . + . + "arXiv" . + . + . + . + . + "biodiversity" . + "signaling-gateway" . + "endocrinology" . + "false"^^ . + "false"^^ . + . + . + . + . + . + "https://viralzone.expasy.org/"^^ . + . + . + . + "ecology" . + . + . + . + "http://purl.obolibrary.org/obo/MPIO_$1"^^ . + . + . + . + "nucleotide" . + "unpd" . + "^\\d+$"^^ . + . + . + "probesanddrugs" . + . + . + . + . + "Platynereis Developmental Stages" . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families."^^ . + . + . + . + . + "false"^^ . + . + "Cell Signaling Technology Pathways" . + . + . + "An ontology to standardize research output of nutritional epidemiologic studies."^^ . + . + "obo" . + . + . + . + . + . + "social science" . + "IA"^^ . + . + . + . + . + . + . + "Sebastien Moretti" . + "https://bioregistry.io/ecoliwiki:"^^ . + "metabolites" . + "MGI" . + . + . + "http://exac.broadinstitute.org/transcript/$1"^^ . + . . - . - "enzyme" . - . - . - . - . - . - "^PR[0-9]{6}$"^^ . - . - "ribocentre" . - . - . - "https://www.storedb.org/?STOREDB:DATASET$1"^^ . - "0000013"^^ . - "0004828"^^ . - . - "http://zfin.org/$1"^^ . - . - "phenomics" . - "data management" . - . - . - . - . - . - _:N7c54b74df1bf4d98878dd82a0b518dd4 . - "false"^^ . - . - "http://purl.obolibrary.org/obo/CMF_$1"^^ . - . - "false"^^ . - "The cell line vocabulary inside FlyBase"^^ . - . - . - . - . - . - "ontology" . - . - . - "T01B6.1"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." . - . - . - . - "0000093"^^ . - . - "Cell line databases/resources"^^ . - "owl" . - "AOPWiki (Key Event Relationship)" . - "CIViC Molecular Profile" . - . - . - "amphx" . - . - . - . - . - "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."^^ . - . - . - "life science" . - . - "false"^^ . - . - "CIViC Evidence" . - . - "biochemistry" . - "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information."^^ . - . - . - . - . - "http://www.gramene.org/db/protein/protein_search?protein_id="^^ . - . - "protein" . - . - "health science" . - . - . - . - "https://neurovault.org/images/"^^ . - "Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)"^^ . - . - . - "paxdb.organism" . - "https://biosimulators.org/simulators/$1"^^ . - "ontology" . - "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"^^ . - . - "harukin@protein.osaka-u.ac.jp" . - . - "Metabolic Atlas" . - "http://biobanknetwork.telethon.it/Sample/View?sampleId=$1"^^ . - "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved."^^ . - "http://purl.obolibrary.org/obo/WBls_"^^ . - . - . - . - "ontology and terminology" . - . - . - . - . - . - . - . - . - . - "Mammalian Phenotype Ontology" . - . - . - "http://purl.org/gc/"^^ . - . - . - "biology" . - . - . - "ontology" . - "ontie" . - "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures."^^ . - . - "1755"^^ . - . - . - "http://scop.berkeley.edu/sunid=$1"^^ . - "^F\\d{4}$"^^ . - "SNOMEDCT_US_2018_09_01" . - . - . - . - . - . - "small molecule" . - "xpo" . - "data integration" . - "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"^^ . - "so" . - . - . - . - . - . - . - . - . - . - . - "swo" . - "false"^^ . - . - . - . - "Ontology for MicroRNA Target" . - . - . - . - . - "ontology" . - . - . - "cob" . - "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes."^^ . - . - "The identifier for an observation in iNaturalist"^^ . - . - . - . - . - "false"^^ . - "dna" . - . - . - . - . - . - "ILMN_129894"^^ . - "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer."^^ . - "ITMCTR2023000002"^^ . - _:N167e307fdbd04948979ace60f0f6d68e . - . - . - . - . - . - . - . - . - . - . - "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID="^^ . - . - . - "false"^^ . - "Open Data for Access and Mining" . - "The LifeWatch ERIC repository of semantic resources for the ecological domain." . - . - . - . - . - . - . - "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books."^^ . - . - "https://www.ebi.ac.uk/chembl/entity/$1"^^ . - . - "Kristian Axelsen" . - "Cell Cycle Ontology" . - "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models."^^ . - . - "congenic rat" . - . - "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession="^^ . - . - . - "biochemistry" . - "biogrid" . - . - . - . - "systems biology" . - . - "http://www.candidagenome.org/cgi-bin/locus.pl?dbid="^^ . - . - . - "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information."^^ . - . - . - . - . - "19"^^ . - . - . - . - . - "false"^^ . - "obo" . - . - "true"^^ . - . - "GitHub is an online host of Git source code repositories."^^ . - . - "ontology" . - "uniprot.location" . - "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"^^ . - "neurophysiology" . - "https://viperdb.org/Info_Page.php?VDB=$1"^^ . - . - . - "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . - . - "^\\d{7}$"^^ . - . - . - . - . - "obo" . - "begdb" . - "Computational Chemistry Ontology" . - . - . - . - . - . - "4"^^ . - "http://opendata.inra.fr/ATOL/ATOL_"^^ . - "ls-c35719-120"^^ . - . - . - . - . - "cell lines" . - . + . + . + "false"^^ . + . + "http://purl.obolibrary.org/obo/WBls_$1"^^ . + . + . + "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA="^^ . + . + . + . + . + "http://scicrunch.org/resolver/SCR_"^^ . + "RXCUI" . + . + . + "dc_cl" . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent."^^ . + "Vocabulary of Interlinked Datasets" . + . + "http://arabidopsis.info/StockInfo?NASC_id=$1"^^ . + . + "C. elegans ORFeome cloning project" . + . + . + . + . + . + . + "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016"^^ . + . + "0001011"^^ . + . + . + "Maize ontology" . + . + . + . + . + . + . + "http://purl.bioontology.org/ontology/VANDF/"^^ . + . + "ontology" . + "http://thebiogrid.org/$1"^^ . + . + . + . + "http://www.whocc.no/atc_ddd_index/?code=$1"^^ . + "https://schema.org/$1"^^ . + "18030"^^ . + "false"^^ . + . + . + "https://bioregistry.io/resolve/github/pull/$1"^^ . + . + . + "Database of small human noncoding RNAs" . + . + "ontology" . + . + . + . + "Dictyostelium discoideum phenotype ontology" . + . + . + "PhosphoPoint Kinase" . + . + . + . + "biosample" . + . + "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object="^^ . + . + . + "Babelon" . + "false"^^ . + . + . + . + "hms.lincs.antibody" . + . + . + "ligandexpo" . + . + . + . + . + . + "Ontology for genetic interval" . + . + "ligandbook" . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . . - "Luis A. Gonzalez-Montana" . - . - "ontology" . - "NIST Chemistry WebBook" . - . - "ontology" . - . - "phenotype" . - . - . - . - . - "GenPept" . - . - . - . - . - . - . - "^MSMEG\\w+$"^^ . - "biology" . - . - "^\\d+$"^^ . - . - . - "http://purl.bioontology.org/ontology/NDDF/$1"^^ . - . - "false"^^ . - "^\\d+$"^^ . - . - "Genomes Online Database" . - "https://omim.org/MIM:PS"^^ . - "Allotrope Merged Ontology Suite" . - . - . - . - "selventa" . - . - "interaction" . - "tol" . - "dna" . - . - "co_340" . - "eVOC mouse development stage" . - . - . - "genome" . - . - . - . - "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales."^^ . - "ontology" . - "selventa" . - . - . - . - . - . - . - . - . - "inchikey" . - . - "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - . - . - . - . - . - . - . - . - . - "^RF\\d{5}$"^^ . - . - "SUBSET_SIREN" . - "CAS_RN" . - . - . - . - "https://www.langual.org/langual_thesaurus.asp?termid=$1"^^ . - . - "gomfid" . - . - . - . - . - "ietf.language" . - . - . - . - . - "sfam" . - . - "XML Schema Definition" . - . - . - "Novus Biologicals" . - "co_326" . - . - "molecular dynamics" . - . - . - "101"^^ . - . - . - "159787"^^ . - "LCL-2085"^^ . - "^\\d{7}$"^^ . - "virology" . - "ecology" . - . - "http://www.w3.org/2001/XMLSchema#"^^ . - . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1"^^ . - "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1"^^ . - "dbvar.study" . - . - . - . - . - . - "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^ . - "meteorology" . - . - "Psychology Ontology" . - . - "T06648"^^ . - . - "chemical" . - . - "chemical" . - . - "computational biology" . - "Model Card Report Ontology" . - "https://cropontology.org/rdf/CO_367:$1"^^ . - "biology" . - "microbiology" . - "benjamin_gyori@hms.harvard.edu" . - . - . - . - . - . - . - . - . - . - . - "0010039"^^ . - . - . - "http://purl.obolibrary.org/obo/BTO_$1"^^ . - "http://cerevisiae.oridb.org/details.php?id=$1"^^ . - . + . + "00001234"^^ . + . + . + . + . + . + "^\\d+$"^^ . + "http://www.ebi.ac.uk/cmpo/CMPO_$1"^^ . + . + . + . + "cgsc" . + . + "4900"^^ . + . + . + . + . + "cytology" . + . + "The Dietary Restriction Gene Database" . + . + "https://www.uniprot.org/tissues/"^^ . + . + . + "tsc" . + . + . + . + . + "gpcrnava" . + "false"^^ . + "false"^^ . + . + . + "mtbd" . + . + "obo" . + . + "http://purl.obolibrary.org/obo/TTO_"^^ . + . + . + "GrainGenes" . + . + . + "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" . + . + . + "biomedical science" . + "88"^^ . + "false"^^ . + _:Ndd908229bd3749e79cfbb01b1a38ec97 . + "emapa" . + "^(\\w+)?\\d+$"^^ . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components."^^ . + . + . + . + "omics" . + "^CHEMBL\\d+$"^^ . + . + . + "l.andres.hernandez.18@student.scu.edu.au" . + . + "UM-BBD_ruleID" . + "A comprehensive compendium of human long non-coding RNAs"^^ . + . + . "false"^^ . - . - . - . - "https://www.beiresources.org/Catalog/cellBanks/$1.aspx"^^ . - . - . - . - "true"^^ . - . - . - "anatomy" . - . - "http://ratmap.org/Showgene.php?gene_stable_id="^^ . - "^phs[0-9]{6}(.v\\d+.p\\d+)?$"^^ . - "Blue Brain Project's published data as knowledge graphs and Web Studios."^^ . - "interaction" . - "Publication Provenance Prefixes" . - "false"^^ . - . - "ontology" . - . - . - "sequence" . - . - . - "false"^^ . - . - . - . - "http://purl.obolibrary.org/obo/CMO_$1"^^ . - . - . - . - "true"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1"^^ . - "cell lines" . - "false"^^ . - "small molecules" . - . - "^FB\\d{8}$"^^ . - . - "http://modelseed.org/biochem/compounds/"^^ . - "subject agnostic" . - . - . - . - "^\\w+$"^^ . - . - . - . - . - "rutgeraldo@gmail.com" . - . - "true"^^ . - "Catalog of purchasable reagents and building blocks"^^ . - . - . - "Comprehensive hierarchy of extinct and extant vertebrate taxa."^^ . - "false"^^ . - "worldavatar.compchem" . - . - "UniProtKB" . - . - . - . - "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . - "Plant Genome Network" . - . - . + . + . + . + "http://stormo.wustl.edu/ScerTF/details/"^^ . + . + . + . + . + . + . + "ThermoFisher is a life sciences supply vendor."^^ . + . + . + . + . + "Bgee organ" . + . + "john.garavelli@ebi.ac.uk" . + . + . + . + . + . + . + . + "biochemistry" . + . + "genetics" . + . + . + "0003"^^ . + "http://purl.obolibrary.org/obo/VSAO_$1"^^ . + . + "health science" . + . + "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1"^^ . + . + "DrugBank" . + . + . + "https://chem.nlm.nih.gov/chemidplus/rn/$1"^^ . + "jgi.proposal" . + . + . + "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols."^^ . + "http://purl.obolibrary.org/obo/DERMO_"^^ . + . + . + . + . + "^CH_\\d+$"^^ . + . + . + . + "NIH Human Embryonic Stem Cell Registry" . + "Uber-anatomy ontology" . + . + "false"^^ . + . + . + . + "mirnest" . + "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid="^^ . + . + . + . + . + . + . + "glycopost" . + . + "^\\d+$"^^ . + "ontology" . + . + . + "false"^^ . + . + "^[A-Za-z_0-9]+$"^^ . + "david.gloriam@sund.ku.dk" . + . + "false"^^ . + "biochemistry" . + . + . + "neurobiology" . + "false"^^ . + "neurondb" . + . + "Biolink Model" . + . + . + . + "false"^^ . + "^\\d+$"^^ . + . + . + . + . + . + . + "obo" . + "gcst" . + . + "false"^^ . + "000000024"^^ . + . + "The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada."^^ . + "AGR" . + . + "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1"^^ . + "pharmacodb.cell" . +_:Nd282c8c166964c4586fa4146207b2dc9 "Bert Van Nuffelen" . + . + "ontology" . + "gene" . + . + . + . + . + "biology" . + "Consensus CDS" . + _:N302b31c103cb46c785d4f40b23c155e9 . + "^(\\d+)|(\\w+)$"^^ . + . + . + "^\\d{7}$"^^ . + . + "nif_subcellular" . + "epidemiology" . + . + "Feature Annotation Location Description Ontology " . + . + "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"^^ . + . + "true"^^ . + . + . + "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val="^^ . + . + . + "Anvil" . + "^\\d{7}$"^^ . + "physiology" . + "depends on" . + . + . + . + . + . + . + . + . + . + "^\\w+$"^^ . + . + "false"^^ . + . + "bcrj" . + "true"^^ . + . + "http://www.w3.org/ns/activitystreams#"^^ . + "cmpo" . + "pathguide" . + "Nucleic Acids Phylogenetic Profiling" . + . + . + . + . + "false"^^ . + . + . + . + . + "gold standard" . + . + "agriculture" . + . + . + . + . + "ontology" . +_:Na0f17686c21a4cc9adb495d45d340149 "Allen Institute for Brain Science" . + "cls" . + "kegg.dgroup" . + "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" . + "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties"^^ . + "repository" . + . + . + "false"^^ . + . + . + . + "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1"^^ . + . + . + . + . + "^PA\\d+$"^^ . + . + "health science" . + . + "classification" . + "1981638"^^ . +_:Nd76b03d6e7bf479999c04bf3d1889fcd "Stephen Larson" . . - . - "robert.thacker@stonybrook.edu" . - . - "Sergio José Rodríguez Méndez" . - "KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks."^^ . - . - . - . + "https://www.gleif.org/lei/"^^ . + . + . + "false"^^ . + "dna" . + "UniProt Keywords" . + . + . + . + . + "facebase" . + . + "Yongqunh He" . + "paul.fabry@usherbrooke.ca" . + . + . + . + . + "NIHhESC-10-0083"^^ . + . + . + "false"^^ . + . + "https://www.clinicaltrials.gov/study/"^^ . + . + "http://purl.obolibrary.org/obo/OMP_"^^ . + . + "function" . + . + "https://comptox.epa.gov/dashboard/$1"^^ . + . + . + . + . + . + "hagr.gendr" . + . + "burkesquires@gmail.com" . + . + "MetaboLights Compound" . + "Distributed Archives for Neurophysiology Data Integration" . + "^\\d+$"^^ . + . + . + . + "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." . + . + . + . + "false"^^ . + . + "Saccharomyces Genome Database" . + "homologene" . + . + "bioproject" . + . + "https://ssbd.riken.jp/database/dataset/$1"^^ . + . + . + . + . + . + . + "life science" . + "0000000"^^ . + . + . + . + . + . + . + . + . + "ena.embl" . + "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$1"^^ . + . + . + "obo" . + "microbial" . + . + "^C\\d{4}$"^^ . + . + "10007835"^^ . + "https://cells.ebisc.org/"^^ . + . + . + . + "drugbank.bioentity" . + . + . + "agrkb" . + . + "planttfdb" . + . + . + . + "glygen" . + "pathways" . + "kegg.genes" . + "Event (INOH pathway ontology)" . + . + . + . + "UniProt Archive" . + _:Nfc0f489e36ce453cac43f91508c63245 . + "http://www.cathdb.info/cathnode/$1"^^ . + . + . + . + . + . + . + . + . + "molecular microbiology" . + . + . + . + . . - . - . - "pathway" . - . - "http://www.t3db.org/toxins/"^^ . - "Mouse Developmental Anatomy Ontology" . - "sopharm" . - . - "https://jjj.bio.vu.nl/models/"^^ . - . - "supply" . - "http://purl.obolibrary.org/obo/LEPAO_$1"^^ . - "molecular biology" . - "http://hawaii.eagle-i.net/i/$1"^^ . - "genetics" . - . - "Mingxun Wang" . - . - . - . - . - "http://www.gramene.org/db/protein/protein_search?protein_id=$1"^^ . - . - "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . - . - "APID Interactomes" . - "rna" . - . - "false"^^ . - . - "obo" . - . - "function" . - . - . - . - "life sciences" . - . - . - . + "https://archive.softwareheritage.org/browse/swh:$1"^^ . + . + . + "transcriptomics" . + . + . + "http://purl.bioontology.org/ontology/CSP/"^^ . + . + . + . + . + . + "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research. "^^ . + . + . + "false"^^ . + . + . + "https://www.datanator.info/gene/$1"^^ . + . + "phenomics" . + . + . + . + . + . + "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them."^^ . + . + "Alex Bateman" . + . + . + . + . + . + . + "http://www.scopus.com/record/display.url?origin=inward&eid="^^ . + "^\\d+$"^^ . + "ontology" . + "Stress Knowledge Map" . + "ohd" . + "traits" . + "http://id.nlm.nih.gov/mesh/vocab#"^^ . + "biomaterial manufacture" . + . + . + . + . + "Melanoma Molecular Map Project Biomaps" . + . + "dce" . + . + . + . + . + . + . + . + . + "biology" . + . + "nstd102"^^ . + . + "false"^^ . + . + . + . + . + . + . + . + "^[0-9]{15}[0-9X]{1}$"^^ . + "0002066"^^ . + "CorrDB" . + "virology" . + "http://www.interfil.org/details.php?id="^^ . + "49"^^ . + . + . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . + "0000001"^^ . + "CropMRepository" . + "health science" . + "obo" . + . + . + . + . + . + . + "molecule" . + . + . + . + . + . + . + "biocuration" . + "PRJDB3"^^ . + . + . + . + "http://dictybase.org/gene/$1"^^ . + . + "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models."^^ . + . + "life science" . + "false"^^ . + "bmrb.restraint" . + . + "Genomics of Drug Sensitivity in Cancer" . + . + "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo="^^ . + "oio" . + . + . + "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."^^ . + "BIOZIL" . + "physiology" . + "http://www.bioinfo.org/NONCODEv4/show_rna.php?id="^^ . + "Aromatic"^^ . + "mouse" . + "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types."^^ . + "chemical biology" . + . + . + "social and behavioural science" . + . + "false"^^ . + . + "HBB"^^ . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . . - . - "GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio."^^ . - "A user of FAIRsharing"^^ . - . - "Tetrahymena Genome Database" . - . - "ontology" . - . - . - "gene" . - . - "gobp" . - . - "false"^^ . - . - . - . - . - "true"^^ . - . - . - . - "https://www.novusbio.com/products/$1"^^ . - . - . - . - "Regulation of Gene Expression Ontology" . - . - "NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.\n\nKnowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004)."^^ . - . - . - "3"^^ . - . - "https://w3id.org/reproduceme#$1"^^ . - "pathway" . - "molmedb" . - . - . - "http://purl.org/spar/cito/$1"^^ . - "obo" . - . - "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name="^^ . - . - . - . - "MobiDB is a database of protein disorder and mobility annotations."^^ . - . - "fobi" . - . - . - . - . - . - . - "pathway" . - "epidemiology" . - . - . - . - . - . - "Database containing promotor sequences found in Saccharomyces cerevisiae."^^ . - . - "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"^^ . - "^\\d+$"^^ . - . - . - . - "https://mediadive.dsmz.de/ingredients/"^^ . - "small molecule" . - . - . - "Simple Standard for Sharing Ontological Mappings" . - . - . - "life science" . - . - . - . - . - . - "cellimage" . - . - "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process."^^ . - . - . - . - . - . - . - . - "Locus Reference Genomic" . - . - . - . - "biomedical science" . - . - . - "75"^^ . - . - "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_$1"^^ . - "false"^^ . - "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1"^^ . - "hms.lincs.cell" . - . - . - "Sequence Read Archive" . - . - . - "life science" . - "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol="^^ . - "umls.sty" . - "epigenetics" . - . - "A vocabulary for the catalysis disciplines" . - . - . - . - . - . - "false"^^ . - "ISBN-13" . - "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key="^^ . - "634515043"^^ . - "3618"^^ . - "Leigh.Carmody@jax.org" . - "gene" . - "491187"^^ . - "larvae" . - . - "^NRFC\\d+$"^^ . - "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence."^^ . - "ontology" . - "^\\d+$"^^ . - . - "life science" . - . - . + . + . + "https://catalog.hathitrust.org/Record/$1"^^ . + . + "Andrew G. McArthur" . + . + . + . + "https://bbp.epfl.ch/nexus/web/studios/public/"^^ . + "true"^^ . + . + "virus" . + "mutant mouse repository" . + . + . + "modularmassactionprimer"^^ . + . + . + . + . + . + . + . + . + "ontology" . + "metagenomics" . + . + . + "violinID" . + . + . + . + . + . +_:N4b3abacffda54ddcb05fdf06621a953e "InterPro Help" . + "false"^^ . + . + . + "functional genomics" . + . + . + . + . + "https://entomology.ca.uky.edu/content/$1"^^ . + . + . + . + "obo" . + . + . + "5HT3Arano"^^ . + . + . + "gene" . + "gene" . + "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id="^^ . + "http://qudt.org/schema/qudt#$1"^^ . + "owl" . + "^spike\\d{5}$"^^ . + . + . + . + . + "phenotype" . + "The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)"^^ . + "bioinformatics" . + . + "74"^^ . + . + . + . + . + "IPP900099"^^ . + . + "false"^^ . + "^\\d+$"^^ . + . + . + . + . + . + "co_324" . + . + "http://purl.obolibrary.org/obo/OAE_"^^ . + "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)."^^ . + . + "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG"^^ . + . + . + "functional genomics" . + . + "life-cycle" . + . + "Jie Zheng" . + . + "tads" . + . + "ArrayMap" . + . + . + . + "owl" . + . + "^\\d+$"^^ . + "cheminformatics" . + "dg.6vts" . + . + "^\\d+$"^^ . + . + . + . + . + . + . + . + "ontology" . + "rna" . + . + "^\\d{7}$"^^ . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . . - "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data."^^ . - "false"^^ . - . - . - . - . - "ontology" . - . - . - "bioactivities" . - "^[AMCST][0-9x][0-9]$"^^ . - "apo" . - "http://lincsportal.ccs.miami.edu/cells/#/view/$1"^^ . - "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals."^^ . - "false"^^ . - . - "^\\d+$"^^ . - . - . - "CASID" . - "https://models.physiomeproject.org/exposure/$1"^^ . - . - "^\\d+$"^^ . - . - . - "FAIRsharing.62qk8w" . - . - . - . - . - . - "true"^^ . - . - . - . - . - . - "biomedical science" . - . - "The State of Alaska's Salmon and People Ontology" . - . - . - "neurovault.image" . - . - "^(cd)?\\d{5}$"^^ . - "false"^^ . - "health science" . - . - . - . - "ontology" . - . - . - . - . - "pd_st" . - . - . - "poro" . - . - . - . - . - . - . - . - "A Database of Human Hemoglobin Variants and Thalassemias" . - . - . - "^\\d{7}$"^^ . - . - . - "BAMSC981"^^ . - "0000519"^^ . - "0003"^^ . - . - "^\\d+$"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." . - "false"^^ . - "anatomy" . - . - "classification" . - "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules."^^ . - . - . - "MaizeGDB" . - . - "medicine" . - "icdo" . - "scretf" . - . - "bibliometrics" . - "knowledge and information systems" . - "Ontology"^^ . - . - . - . - "InterLex" . - . - . - . - . - . - "ribocenter" . - . - "COSMIC Gene" . - . - . - "Peroxibase" . - . - "https://datalab.rwth-aachen.de/MINDER/resource/$1"^^ . - "^\\d+$"^^ . - . - "NLXQUAL" . - . - . - "rna" . - . - "https://stemcells.nindsgenetics.org?line=$1"^^ . - "UMLS CUI" . - . - . - . - "^\\d+$"^^ . - . - . - "protein trap" . - "oryzabase.mutant" . - . - "^DTXSID\\d+$"^^ . - . - "MetaCyc Reaction" . - . - "33607"^^ . - . - . - . - . - . - "genome" . - . - "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1"^^ . - . - "^DBCOND\\d+$"^^ . - "biomedical science" . - "false"^^ . - . - . - "https://bioregistry.io/metaregistry/scholia/$1"^^ . - "false"^^ . - . - "false"^^ . - . - . - "^\\d{5}$"^^ . - . - . - . - "fdb8a927-45c3-48b7-9743-cbb5e16837fa"^^ . - . - "https://medical-data-models.org/forms/$1"^^ . - "Networked Knowledge Organization Systems/Services/Structures" . - . - "jgi.proposal" . - . - . - . - . - . - "5282"^^ . - "false"^^ . - . - "life science" . - "molbase.sheffield" . - "false"^^ . - . - . - "http://www.bindingdb.org/compact/$1"^^ . - . - "http://cegg.unige.ch/orthodb/results?searchtext=$1"^^ . - . - "qb" . - . - . - "systems biology" . - . - . - . - . - "Q5BJF6-3"^^ . - . - . - "Pathway ontology" . - . - . - . - "tm.shah@cgiar.org" . - . - "https://www.ebi.ac.uk/QuickGO/GProtein?ac="^^ . - . - . - "^C\\d+$"^^ . - "traditional medicine" . - "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . - "ev" . - "EC" . - . - . - . - "^[A-Za-z0-9\\/]+$"^^ . - "^M\\d+$"^^ . - "maria.gould@ucop.edu" . - . - . - . - . - . - . - . - . - "http://zfin.org/"^^ . - . - "00000001"^^ . - "http://www.pharmgkb.org/pathway/"^^ . - . - . - . - . - "false"^^ . - . - "10.1038/s41597-022-01807-3"^^ . - . - . - . - "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . - "false"^^ . - "false"^^ . - "true"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - . - "0005"^^ . - "0000080"^^ . - . - "kristian.axelsen@sib.swiss" . - "^\\S+$"^^ . - . - . - "csd" . - "0000057"^^ . - . - . - "false"^^ . - . - . - "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID="^^ . - "false"^^ . - . - "Christine.Pourcel@u-psud.fr" . - . - . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - "https://www.kegg.jp/entry/$1"^^ . - . - . - "ontology" . - . - . - . - . - "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1"^^ . - . - . - "life science" . - "DB14938"^^ . - "Description of Plant Viruses" . - . - . - . - "mouse" . - "microscope" . - "life science" . - "4447"^^ . - . - . - . - . - . - "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:"^^ . - "tetrahymena thermophila" . - . - "https://www.ebi.ac.uk/metagenomics/analyses/"^^ . - "protein" . - "structure" . - "false"^^ . - . - . - . - . - . - "dip" . - "https://pubchem.ncbi.nlm.nih.gov/cell/$1"^^ . - . - . - . - "usageNote"^^ . - . - "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures."^^ . - _:Naea93ab07d90452c8a5dfa9ac16f0589 . - . - . - . - . - "Eukaryotic Promoter Database" . - . - "ontology" . - . - . - . - . - "CropMRepository" . - . - "https://semanticscience.org/resource/CHEMINF_$1" . - . - . - "AGRICOLA_ID" . - . - . - . - . - . - . - "0000295"^^ . - . - . - "protein" . - . - "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."^^ . - "kegg.environ" . - . - "http://ctdbase.org/detail.go?type=chem&acc=$1"^^ . - "genome" . - "https://eol.org/pages/"^^ . - . - . - "PM0012345"^^ . - "An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus."^^ . - . - . - "Ontology for Biobanking" . - . - . + "http://purl.obolibrary.org/obo/MFMO_"^^ . + . + . + . + . + . + . + "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors."^^ . + . + "WBls" . + "genome" . + . + "https://bioregistry.io/cabri:"^^ . + . + . + . + . + . + . + . + "http://purl.enanomapper.org/onto/ENM_"^^ . + "https://meshb.nlm.nih.gov/record/ui?ui="^^ . + "http://fossilworks.org/?a=referenceInfo&reference_no=$1"^^ . + . + . + "https://bioregistry.io/kyinno:"^^ . + . + . + . + . + "MGYA00002270"^^ . + . + "^\\d{7,}$"^^ . + . + . + "abm" . + . + . + . + . + . + . + . + "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$"^^ . + "dclunie@dclunie.com" . + . + . + "1"^^ . + "false"^^ . + . + "cellosaurus.resource" . + "biro" . + "bold.taxonomy" . + . + . + . + . + . + "P3DB Protein" . + . + . + . + . + . + . + . + "gene expression" . + . + "Identifiers.org Ontology" . + . + . + "National Science Foundation Award" . + "^UPI[A-F0-9]{10}$"^^ . + "false"^^ . + . + . + "https://progenetix.org/services/ids/$1"^^ . + . + . + "http://darcsite.genzentrum.lmu.de/darc/view.php?id="^^ . + "https://bioregistry.io/ligandexpo:"^^ . + . + "false"^^ . + "^\\d{7}$"^^ . + "ontology" . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "Trish Whetzel" . + . + . + . + "false"^^ . + . + . + "webelements" . + "epidemiology" . + "Quantities, Units, Dimensions, and Types Ontology" . + "Reactome" . + "false"^^ . + . + . + . + "ontology" . + "http://genomics.senescence.info/diet/details.php?id=$1"^^ . + . + "https://pharmacodb.ca/cell_lines/"^^ . + . + "false"^^ . + . + "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information."^^ . + "EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.)."^^ . + "cgnc" . + . + . + . + . + "cpd15380"^^ . + "https://www.abcam.com/$1.html"^^ . + "http://www.probonto.org/ontology#PROB_$1"^^ . + . + . + . + . + . + . + "medical microbiology" . + . + . + . + . + . + . + "false"^^ . + . + . . - . - "ontology" . - "phylogeny" . - "ECCODE" . - "PharmacoDB Datasets" . - . - . - . - . - . - . - "NIF Standard Ontology: Brain Regions" . - . - "EGID" . - "GC06M052656"^^ . - . - . - . - . - . - "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR."^^ . - "2673500"^^ . - . - "http://www.w3.org/2003/01/geo/wgs84_pos#"^^ . - . - . - . - . - "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_cell_"^^ . - . - . - "xmetdb" . - . - "subject agnostic" . - "dg.4503" . - . - "muamith@utmb.edu" . - "co_320" . - "12300"^^ . - "The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)"^^ . - . - "obo" . - . - "^\\d{7}$"^^ . - . - . - "Xeni Kechagioglou" . - . - "false"^^ . - . - "scomp" . - . - . - "matt@tislab.org" . - "3075966"^^ . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - "Scopus Researcher" . - "false"^^ . - . - . - . - "protein" . - . - "life science" . - "Sigma Aldrich is a life sciences supply vendor."^^ . - . - . - . - . - "life science" . - . - . - . - . - . - "^(\\d|\\w)+-\\d$"^^ . - . - "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1"^^ . - . - . - "nucleic acid" . - "false"^^ . - . - "Website with general information about Arabidopsis and functionalities such as a genomic viewer"^^ . - . - . - . - "^\\d\\w+$"^^ . - . - . - "taxonomy" . - "http://purl.obolibrary.org/obo/RO_"^^ . - . - "expression" . - . - . - "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." . - . - . - . - . - . - . - "lincs" . - "classification" . - . - . - . - "Wikidata" . - "http://biomodels.net/rdf/vocabulary.rdf#$1"^^ . - "true"^^ . - "http://www.molmovdb.org/cgi-bin/morph.cgi?ID="^^ . - . - "UniChem compound" . - . - "life science" . - "mamo" . - "The [Alliance of Genome Resources](https://www.alliancegenome.org/about-us) creates identifiers for several biological entity types including genes, other sequence features, constructs, morpholinos, TALENs, CRISPRs, variants, alleles, genotypes, strains, environments and experiments, phenotype annotations, expression annotations, disease annotations, interactions, and variant annotations.\n\nThe Alliance of Genome Resources was founded by the following Model Organism databases and the Gene Ontology Consortium and distributes high-quality, curated knowledge about several model organisms in a single, unified location:\n\n- [ZFIN](https://zfin.org) - Zebrafish Information Network\n- [WormBase](https://wormbase.org)\n- [MGI](https://www.mgi.org) - Mouse Genome Informatics\n- [RGD](https://rgd.mcw.edu) - Rat Genome Database\n- [SGD](https://www.yeastgenome.org) - Saccharomyces Genome Database\n- [FlyBase](https://flybase.org)\n- [Xenbase](https://www.xenbase.org)"^^ . - "AC00963334"^^ . - . - . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - "wikidata.property" . - . - "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/"^^ . - . - . - . - . - . - . - . - "dictyBase" . - . - . - "https://biosimulations.org/projects/"^^ . - "unipathway.pathway" . - . - . - "selventa" . - "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity."^^ . - . - "inhibitors" . - "animal physiology" . - . - "An ontology that enables the description of reviews of scientific articles and other scholarly resources."^^ . - "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$"^^ . - "funderregistry" . - "Database of Escherichia coli Sequence and Function" . - . - "^\\d+$"^^ . - "eugenes" . - "CQG5"^^ . - _:Ndfe615d02a6241f0848428d135ebbbd9 . - "1017"^^ . - . - . - . - "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)."^^ . - . - "artificial intelligence" . - "PomBase" . - . - "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId="^^ . - . - . - . - . - "false"^^ . - . - . - "https://plants.ensembl.org/id/"^^ . - "http://purl.enanomapper.org/onto/ENM_$1"^^ . - "47419"^^ . - . - . - . - . - "false"^^ . - "cell_biolabs" . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - "genome" . - "human genetics" . - . - . - . - "false"^^ . - . - . - . - . - "23"^^ . - . - "obo" . - . - . - . - . - "https://chemkg.github.io/chemrof/"^^ . - . - . - . - . - . - "Database of structurally defined protein interfaces" . - . - . - "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible."^^ . - "numpy"^^ . - "Environmental conditions, treatments and exposures ontology" . - "https://bioregistry.io/matrixdb.association:"^^ . - . - "false"^^ . - . - . - "https://www.geonames.org/$1"^^ . - . - . - "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id="^^ . - . - . - "mouse" . - . - . - . - "An identifier for a resource or metaresource." . - "Traits and phenotypes of flowering plants occurring in digitized Floras"^^ . - . - "false"^^ . - "false"^^ . - "obo" . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/ECOCORE_"^^ . - . - . - "xao" . - . - "https://www.inaturalist.org/places/$1"^^ . - "computational biology" . - . - "botany" . - "qualities" . - . - "mediadive.solution" . - "MobiDB" . - . - . - . - "https://gudmap.org/id/"^^ . - . - . - "Sierra Moxon" . - "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1"^^ . - . - . - . - . - "false"^^ . - "morpheus" . - . - . - "^\\d{4,}$"^^ . - . - . - . - "idot" . - "ontology" . - . - . - . - . - "environmental science" . - "data science" . - "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e="^^ . - . - "uberon" . - . - "false"^^ . - . - . - . - . - "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1"^^ . - "nfdi4chem.osmo" . - . - "dragondb.dna" . - . - . - . - . - "hmsl_id" . - . - "life science" . - . - . - . - . - "false"^^ . - "Metabolomics Standards Initiative Ontology" . - . - "ontology" . - . - "genecards" . - . - . - . - "PGOHUM00000289843"^^ . - . - . - . - . - "cheminf" . - "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype."^^ . - . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID="^^ . - . - "neuroscience" . - "Represents chemical kinetic reaction mechanisms."^^ . + "false"^^ . + "multicellds.collection" . + . + . + "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry."^^ . + . + . + . + . + "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id="^^ . + "botany" . + . + . + "TS-0285"^^ . + . + "false"^^ . + . + "entrez gene/locuslink" . + . + . + "false"^^ . + "true"^^ . + . + "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome."^^ . + "^NRFC\\d+$"^^ . + "Pfam Clans" . + . + . + . + "^\\d{4}$"^^ . + "https://drugs.ncats.io/drug/"^^ . + . + "CRISP Thesaurus, 2006" . + . + . + . + . + "false"^^ . + "birnlex" . + "true"^^ . + . + "1000003"^^ . + "linguistics" . + . + . + . + "ddinter.interaction" . + "12929"^^ . + "1178"^^ . + "^ST[0-9]{6}$"^^ . + . + . + . + "laml_tcga_pub"^^ . + . + . + . + "https://www.google.com/patents/$1"^^ . + "http://purl.obolibrary.org/obo/INO_$1"^^ . + "^\\d+$"^^ . . - "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1"^^ . - "eggnog" . - . - . - . - . - "^\\d+$"^^ . - . - . - "false"^^ . - "http://www.pharmgkb.org/disease/$1"^^ . - . - . - . - . - . - . - . - . - "ped" . - . - "massive" . - "Glyma0021s00410"^^ . - . - . - . - . - . - . - . - "ftp://hgdownload.cse.ucsc.edu/goldenPath/"^^ . - . - . - . - . - . - "Linguist" . - "biomedical science" . - . - . - . -_:Naea93ab07d90452c8a5dfa9ac16f0589 "Crop Ontology Helpdesk" . - . - . - . - "Yam ontology" . - . - "iedb" . - . - . - . - "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."^^ . - . -_:N06dae87cab9f4b78b60ddc858172f693 "chEBI" . - . - "https://viralzone.expasy.org/$1"^^ . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/SYMP_$1"^^ . - . - . - . - . - . - "https://datacommons.org/browser/$1"^^ . - "http://purl.obolibrary.org/obo/LABO_$1"^^ . - "Data Catalog" . - . - . - . - "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1"^^ . - . - "^[1-9]\\d*$"^^ . - . - . - . - "http://purl.obolibrary.org/obo/OOSTT_$1"^^ . - . - "MSV000082131"^^ . - . - . - . - . - "protein" . - . - . - "Unified Medical Language System Atomic Unique Identifier" . - . - . - "688"^^ . - . - . - . - "CIViC gene" . - . - . - . - "^KW-\\d{4}$"^^ . - . - "false"^^ . - . - "^\\d{7}$"^^ . - "https://www.ebi.ac.uk/gwas/studies/"^^ . - "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession."^^ . - _:N906e186161904af98dd7f472fd03689b . - "http://purl.obolibrary.org/obo/NBO_"^^ . - . - "A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number."^^ . - . - . - . - . - . - . - . - . - "A0014"^^ . - . - "http://tables.pseudogene.org/[?species_name]/$1"^^ . - . - . - "NIST" . - "false"^^ . - "ChemIDplus" . - . - . - . - "rs17852708"^^ . - . - . - "https://chemkg.github.io/chemrof/$1"^^ . - "Cardiovascular Disease Ontology" . - . - . - "phylogenetics" . - . - "Property"^^ . - . - "genome" . - "br/1"^^ . - "ontology" . - . - "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$"^^ . - "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea."^^ . - . - . - . - "^\\d{6}$"^^ . - . - "false"^^ . - "http://purl.obolibrary.org/obo/MAXO_"^^ . - "AS000060"^^ . - "Next Generation Biobanking Ontology" . - . - "https://bioregistry.io/schema/#"^^ . + . + "https://models.physiomeproject.org/workspace/"^^ . + "^[AMCST][0-9x][0-9]$"^^ . + . + "biomodels.teddy" . + "^\\d{7}$"^^ . + . . - . - "David Clunie" . - "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1"^^ . - . - . - "Terminology of Anatomy of Human Embryology" . -_:Nf7642f249190476898c7f16d563ba940 "nospam@iandavis.com" . - . - "false"^^ . - . - "ncim" . - "subject agnostic" . - . - . - . - . - . - . - "http://zinc15.docking.org/substances/"^^ . + . + . + "RF00230"^^ . + "HS000015122"^^ . + "GO Evidence Code" . + "The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR)."^^ . + "^\\d{4}$"^^ . + "Ontological Interpretations for Web Property Graphs" . + . + . + . + "http://purl.obolibrary.org/obo/CVDO_"^^ . + . + . + . + . + . + . + "CAPS-DB" . + . + . + "The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data."^^ . + "false"^^ . + . + . + . + . . - . - "008893080"^^ . - "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1="^^ . - . - . - "ontology" . - "false"^^ . - . - "JCGG-STR008690"^^ . - "00001"^^ . - . - . + "https://w3id.org/faircookbook/"^^ . + "false"^^ . + "PIR Superfamily Classification System" . + . + "false"^^ . + . . - . - . - . - . - . - "http://www.w3.org/2004/02/skos/core#"^^ . - "chembl.target" . - "Tick Anatomy Ontology" . - . - "http://www.ecogene.org/gene/$1"^^ . - "r3d100010772"^^ . - "Gemina Symptom Ontology" . - "141"^^ . - "A Semantic Web Rule Language Combining OWL and RuleML" . - "protein" . - . - . - "biomedical science" . - . - . - "false"^^ . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - "pao" . - . - "has prefix" . - . - . - "icdom:8500_3"^^ . - . - "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM."^^ . - . - . - . - "http://purl.org/dc/dcmitype/$1"^^ . - . - "structure" . - "hpscreg" . - "wawong@gmail.com" . - . - . - . - . - . - "Christine Pourcel" . - . - . - "^\\d{7}$"^^ . - . - "montana.smith@pnnl.gov" . - . - "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR)."^^ . - . - . - "life science" . - . - . - . - "^\\d+$"^^ . - "dna" . - "Chemistry resources"^^ . - "ontology" . - . - . - . - . - "anatomy" . - . - . - "http://crdd.osdd.net/servers/virsirnadb/record.php?details="^^ . - "Saccharomyces Genome Database" . - . - . - . - "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . - "LinJ.20.0070"^^ . - "rna" . - "EC number" . - "Michael K. Gilson" . - . - "^[dp]\\.[a-z0-9]{8}$"^^ . - . - "A comprehensive listing of post-transcriptionally modified nucleosides from RNA -"^^ . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/MSIO_"^^ . - . - "http://www.ebi.ac.uk/astd/geneview.html?acc=$1"^^ . - . - "NCI Metathesaurus (NCIm) is a wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. It integrates terms and definitions from different terminologies, including NCI Thesaurus, however the representation is not identical."^^ . - . - "1948"^^ . - . - "medical biotechnology" . - "subject" . - . - "TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available."^^ . - "vo" . - "^\\d+$"^^ . - . - "^\\d+$"^^ . - . - "RDF"^^ . - "https://biofactoid.org/document/"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "https://www.uniprot.org/uniref/"^^ . - "International Fungal Working Group Fungal Barcoding." . - . - . - "Molecule role (INOH Protein name/family name ontology)" . - . - . - . - . - . - "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."^^ . - . - . - . - "https://www.kegg.jp/entry/"^^ . - . - "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica."^^ . - . - . - . - . - . - "false"^^ . - "AY109603"^^ . - . - . - . - "life science" . - . - "data management" . - "BacMap Map" . - "false"^^ . - . - . - . - . - . - . - "eukaryotic" . - "molecular biology" . - . - . - . - "https://cn.dataone.org/cn/v2/resolve/{$1}"^^ . - "anatomy" . - . - . - . - . - . - . - . - "protein" . - "Bgee gene" . - "vgnc" . - . - . - "https://www.ncbi.nlm.nih.gov/biosystems/"^^ . - "DirectiveInformationContentEntity"^^ . - . - . - . - . - . - . - . - . - "^\\w+$"^^ . - "Jianmin Wu" . - . - "ontology" . - . - . - . - . - "dna" . - . - "^(cl|tum)\\d+$"^^ . - "ECOLI:CYT-D-UBIOX-CPLX"^^ . - "life-cycle" . - . - . - . - . - . - "nutritional science" . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "topfind" . - . - . - . - . - "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1"^^ . - . - "protein" . - "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms."^^ . - . - . - . - . - . - "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1"^^ . - . - . - "1001"^^ . - "NCITm" . - . - "support@bioontology.org" . - . - . - . - "http://purl.obolibrary.org/obo/ONS_"^^ . - . - "DataONE" . - . - . - . - "Brassica ontology" . - . - . - . - . - "vendor" . - "EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways."^^ . - . - . - . - . - . - "https://reporter.nih.gov/project-details/"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/ARO_$1"^^ . - . - "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1"^^ . - . - . - . - "false"^^ . - . - . - "storedb.study" . - "dna" . - "0000630"^^ . + . + "https://www.ribocentre.org/docs/$1"^^ . + "Gi07796"^^ . + . + "https://fairsharing.org/organisations/"^^ . + "ato" . + "false"^^ . + . + . + . + . + . + "^CCDS\\d+\\.\\d+$"^^ . + . + . + "protein" . + "^\\d+$"^^ . + . + "ontology" . + . + . + "false"^^ . + . + . + . + _:N48b7279c0aaa4cfba617c45096343b1a . + "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId="^^ . + "Mike Cherry" . + . + "http://purl.bioontology.org/ontology/NDDF/$1"^^ . + . + . + "false"^^ . + "false"^^ . + . + "false"^^ . + "ontology" . + . + . + "https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx"^^ . + . + "^(ENSFM|ENSGTV:)\\d+$"^^ . + . + "http://purl.obolibrary.org/obo/ECAO_$1"^^ . + "ontology" . + . + . + . + . + . + . + "genetics" . + "interaction" . + "unipathway.reaction" . + . + . + . + . + "http://func.mshri.on.ca/fly/genes/list_functional_scores/$1"^^ . + "Physico-chemical process" . + "false"^^ . + . + . + "PK-DB" . + . + "0110974"^^ . + . + "relationships" . + "bitterdb.cpd" . + . + . + "http://pombe.oridb.org/details.php?id="^^ . + . + "mediadive.medium" . . - "http://purl.obolibrary.org/obo/OGSF_"^^ . - . - "A database containing predicted viral miRNA candidate hairpins."^^ . - "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations."^^ . - "rna" . - . - "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language."^^ . - . - . - . - "Curated Drug-Drug Interactions Database - Drug" . - . - . - . - "Veterans Administration National Drug File" . - . - "^\\w+$"^^ . - . - "false"^^ . - . - "agriculture" . - "tfclass" . - . - "true"^^ . - . - "false"^^ . - . - "1023371"^^ . - . - . - "Rice ontology" . - "medical informatics" . - . - . - . - "000004"^^ . - . - . - . - . - . - . - "1"^^ . - . - "Ecological terms"^^ . - "co_321" . - . - . - . - . - . - . - . - . - . - . - "Minimal Viable Identifier" . - . - . - "embryo" . - . - "neurolex" . - . - . - . - "cubedb" . - "bioregistry"^^ . - "http://www.bind.ca/Action?identifier=bindid&idsearch="^^ . - . - "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies."^^ . - "false"^^ . - "The World-2DPAGE database" . - . - "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."^^ . - "Taconic Biosciences" . - . - . - . - . - "protein" . - "j.a.moore@dundee.ac.uk" . - . - . - . - "Workflow"^^ . - . - . - . - "thesaurus" . - "https://civicdb.org/links/evidence/"^^ . - . - . - "VSAO_0000183"^^ . - . - . - . - . - "Contains information about cells and data sheets related to transfection."^^ . - . - . - "0000029"^^ . - . - . - "ontology" . - "https://bacteria.ensembl.org/id/"^^ . - . - . - "http://hdl.handle.net/$1"^^ . - . - . - . - . - "biomedical science" . - . - . - "false"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/BSPO_"^^ . - . - . - "BatchelorC@rsc.org" . - . - "https://www.ebi.ac.uk/ols4" . -_:N77a0b5ac24044f6e9515254331151ed1 "hajo.rijgersberg@wur.nl" . - . - . - . - . + "dna" . + "http://modelseed.org/biochem/compounds/"^^ . + . + . + "subject agnostic" . + . + "NCBI Registry" . + . + "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$"^^ . + . + "Liver Cancer Model Repository" . + "https://www.ncbi.nlm.nih.gov/biosystems/$1"^^ . + . + "^F\\d{4}$"^^ . + . + "http://www.w3.org/ns/dcat#"^^ . + "^\\d{7}$"^^ . + . + . + "24801"^^ . + "Beet Ontology ontology" . + . +_:Nf81ca7c123934d1fad4db7af794f82eb "helpdesk@cropontology-curationtool.org" . + . + "2200934"^^ . + . + "false"^^ . + . + "span" . + "botany" . + . + . + . + "signor.relation" . + . + "NeuroLex Anatomy" . + "transcriptomics" . + . + "topics" . + . + "https://www.facebase.org/data/record/#1/isa:dataset/accession="^^ . + . + "https://giardiadb.org/giardiadb/app/record/gene/$1"^^ . + . + "M1"^^ . + "health science" . + . + "gene" . + "International Fungal Working Group Fungal Barcoding." . + "structure" . + . + "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."^^ . + . + "ricenetdb.compound" . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_$1"^^ . + . + . + . + "false"^^ . + . + "http://purl.obolibrary.org/obo/KISAO_$1"^^ . + . + "https://biopragmatics.github.io/providers/diseaseclass/"^^ . + . + . + . + "https://cameochemicals.noaa.gov/chemical/$1"^^ . + . + . + "XB-GENE-922462"^^ . + . + . + "http://igsn.org/"^^ . + . + . + . + . + . + . + . + . + . + "urmas.koljalg@ut.ee" . + . + . + . + "CAID" . + . + . + . + . + . + . + "virology" . + . + "https://www.geonames.org/$1"^^ . + . + . + "Addgene is a non-profit plasmid repository. Addgene facilitates the exchange of genetic material between laboratories by offering plasmids and their associated cloning data to not-for-profit laboratories around the world."^^ . + "CIViC Molecular Profile" . + "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1"^^ . + . + . + "112081"^^ . + . + "http://www.cs.tau.ac.il/~spike/maps/$1.html"^^ . + . + "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated."^^ . + . + . + . + . + "^\\d+$"^^ . + . + . + "Signaling Pathways Project" . + . + "^DDB\\d+$"^^ . + . + "taxonomy" . + "true"^^ . + "animal genetics" . + . + . + . + . + "cheminformatics" . + . + . + . + . + "protein" . + "ontology" . + "false"^^ . + . + . + . + "statistics" . + . "^\\d+$"^^ . - "biology" . - "bmrb" . - "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"^^ . - . - "biomedical science" . - . - . - "genome" . - "gene" . - "rxn00001"^^ . - . - . - "http://purl.obolibrary.org/obo/PDRO_$1"^^ . - "http://purl.obolibrary.org/obo/MCRO_"^^ . - . - . - "http://scop.berkeley.edu/sccs="^^ . - . - "obo" . - . - . + "multicellds.cell_line" . + "00077f1c-c45a-47ba-8e6c-1bf6b6b43fce"^^ . + "AphidBase Transcript" . + "Drug Central" . + . + "The Natural Product-Drug Interaction Research Data Repository, a publicly accessible database where researchers can access scientific results, raw data, and recommended approaches to optimally assess the clinical significance of pharmacokinetic natural product-drug interactions (PK-NPDIs)."^^ . + . + "ontology" . + "genetics" . + "^\\d{7}$"^^ . + . + "eVOC mouse development stage" . + "^\\d+$"^^ . + . + . + . + "david.sehnal@gmail.com" . + . + . + . + . + . + . + . + . + . + . + "53d583d8-40c6-40e1-9296-23f821cd77a5"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Fossilworks Journal" . + "Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings."^^ . + . + . + . + . + . + "obstetrics" . + "skosxl" . + . + . + "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]"^^ . + . + . + . + . + . + . + . + "expression" . + . + "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."^^ . + . + "10.1621/vwN2g2HaX3"^^ . + "false"^^ . + "^\\d{7}$"^^ . + . + . + . + . + "https://scicrunch.org/resolver/RRID:IMSR_TAC_$1"^^ . + . + "https://medlineplus.gov/genetics/condition/"^^ . + "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found."^^ . + . + "A vocabulary for the catalysis disciplines" . + . + . + . + . + . + . + . "http://ligand-depot.rutgers.edu/pyapps/ldHandler.py?formid=cc-index-search&target=$1&operation=ccid"^^ . - "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1"^^ . - . - . - . - "Janna Hastings" . - . - "ST000900"^^ . - . - . - . - . - . - . - . - "Suggested Ontology for Pharmacogenomics" . - "sael" . - . - . - . - . - . - "ncbigi" . - . - . - . - "https://datanator.info/reaction/"^^ . - . - "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries."^^ . - "false"^^ . - . - . - . - . - . - "https://europepmc.org/article/CTX/$1"^^ . - "drugbankv4.target" . - "https://horizondiscovery.com/en/search?searchterm=$1"^^ . - "^Rv\\d{4}(A|B|c)?$"^^ . - . - . - . - . - "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources."^^ . - . - "famplex" . - . - "life science" . - . - . - . - "Dictyostelium discoideum anatomy" . - . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . - "https://www.uniprot.org/unirule/$1"^^ . - "Imke Tammen" . - . - "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"^^ . - . - "data analysis" . - . - . - "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . - . - . - . - "Coronavirus Infectious Disease Ontology" . - "https://lincs.hms.harvard.edu/db/proteins/"^^ . - "rtecs" . - . - "ShareLoc" . - . - . - . - . - . - . - . - . - "false"^^ . - . - "mgi" . - . - "The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. "^^ . - "Biolink Model Registry" . - "niaid.chemdb" . + . + . + . + . + . + . + . + . + "Dictybase Gene" . + "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . + . + . + . + "neuronames" . + "^HIT\\d{9}(\\.\\d+)?$"^^ . + . + "http://www.treefam.org/family/$1"^^ . + . + . + "ehdaa" . + "^\\d{7}$"^^ . + "https://bioregistry.io/metaregistry/go/"^^ . + . + "mauno.vihinen@med.lu.se" . + "Accession number of an entry from the BIND database."^^ . + . + "PELNAW"^^ . + "UMLS CUI" . + . + . + "biodiversity" . + . + . + . + . + "life science" . + . + "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1"^^ . + . + . + . + "http://www.w3.org/2004/02/skos/core#"^^ . + . + "1250"^^ . + "oma.protein" . + . + . + . + . "true"^^ . - "false"^^ . - "AGR" . - . - "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)."^^ . - "https://www.ncbi.nlm.nih.gov/snp/"^^ . - . - . - . - . - "Rafael Richards" . - "dna" . - . - "91005"^^ . - . - "fetus" . - "cell" . - . - . - "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/WBPhenotype_$1"^^ . - "ontology" . - . - "metabolomics" . - "disease model" . - "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . - . - "hsa-mir-200a"^^ . - . - "0290"^^ . - . - . - "biomedical science" . - "00000000"^^ . - "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically."^^ . - . - "false"^^ . - . - . - "Identifiers.org namespace" . - "mirTarBase" . - . - . - . - . - . - "false"^^ . - . - . - "^[0-9]+$"^^ . - . - . - "regulation" . - "Natural Product-Drug Interaction Research Data Repository" . - "Phy000CLXM_RAT"^^ . - . - "false"^^ . - "chebi" . - "https://cropontology.org/rdf/CO_346:"^^ . - . - "^\\d+$"^^ . - "SNOMEDCT_US_2020_03_01" . - . - "http://purl.obolibrary.org/obo/FBSP_"^^ . - . - "interaction" . - "http://www.cathdb.info/domain/"^^ . - . - . - "^GLDS-\\d+$"^^ . - "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm"^^ . - "^\\d+$"^^ . - . - . - . - . + "STOREDB at University of Cambridge" . + . + . + . + "http://purl.obolibrary.org/obo/VT_$1"^^ . + . + . + . + . + . . - . - . - "life science" . - . - "TripleExpression"^^ . - . - . - "uniprot.taxonomy" . - "obo" . - . - . - "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE."^^ . - . - "Porifera Ontology" . - "6"^^ . - "biology" . - . - "International Classification of Diseases, 11th Revision" . - . - . - . - "0000046"^^ . - "life science" . - "pmc" . - "dhowe@zfin.org" . - . - "Ontology of Organizational Structures of Trauma centers and Trauma systems" . - . - "PharmacoDB Cells" . - . - . - "UPC04349"^^ . - . - "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"^^ . - "GlycoEpitope" . - "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1"^^ . - . - "obo" . - "Protein modification" . - . - . - . - "developed by ICARDA - Dec 2018"^^ . - "https://www.cellbiolabs.com/search?keywords="^^ . - . - . - . - "SNOMEDCT_US_2020_09_01" . - . - . - . - "Application ontology for entities related to insecticide resistance in mosquitos"^^ . - . - . - . - . - . - . - "^DP\\d{5}r\\d{3}$"^^ . - "GLIDA Ligand" . - "protein" . - "mir" . - . - . - "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project."^^ . - . - "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term="^^ . - "https://www.alliancegenome.org/accession/"^^ . - . - . - . - "961"^^ . - . - . - "anatomy" . - "false"^^ . - . - "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."^^ . - "http://multicellds.org/MultiCellDB/$1"^^ . - "This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts"^^ . - . - . - . - . - "genomics" . - . - . - . - . - "false"^^ . - . - . - . - "genome" . - . - . - "0009089"^^ . - "fly" . - . - "dashr" . - . - . - . - "obo" . - . - . - . - . + . + . + . + . + "nathan.baker@pnnl.gov" . + . + . + "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources."^^ . + . + . + . + "false"^^ . + . + . + . + . + . + . + "ontology" . + . + "http://purl.uniprot.org/annotation/VAR_$1"^^ . + "^DP\\d{5}$"^^ . + . + "0000047"^^ . + . + "http://purl.obolibrary.org/obo/PHIPO_$1"^^ . + "International Classification of Diseases, 9th Revision, Clinical Modification" . + . + . + "http://purl.obolibrary.org/obo/ONE_$1"^^ . + "obo" . + . + . + . + . + "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections."^^ . + . + . + "ado" . + "https://www.geonames.org/"^^ . + . + . + "pypi" . + . + . + . + . + . + . + . + . + . + "harukin@protein.osaka-u.ac.jp" . + "Web Elements" . + . + . + . + "reaxys" . + . + "https://www.biorxiv.org/content/10.1101/"^^ . + "https://doulix.com/constructs/$1"^^ . + "false"^^ . + "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary."^^ . + . + "false"^^ . + "NLXQUAL" . + "https://smpdb.ca/view/$1"^^ . + . + "Catalytic Site Atlas" . + . + "https://protists.ensembl.org/id/"^^ . + . + . + . + "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."^^ . + . + "false"^^ . + "drugs" . + . + "obo" . + "EOL Secretariat" . + "http://purl.obolibrary.org/obo/UPHENO_$1"^^ . + "https://www.uniprot.org/diseases/$1"^^ . + "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1"^^ . + "SitEx" . + "^HIX\\d{7}(\\.\\d+)?$"^^ . + "false"^^ . + . + "Python"^^ . + . + "false"^^ . + . + "virus" . + "GPST000024"^^ . + . + . + "false"^^ . + "dna" . + "2639"^^ . + "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn="^^ . + . + . + . + . + . + "^[0-9][A-Za-z0-9]{3}$"^^ . + . + . + "preclinical studies" . + . + . + . + "10.1038/s41597-022-01807-3"^^ . + . + . + "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)."^^ . + "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. "^^ . + . + . + "cogs@ncbi.nlm.nih.gov" . + "chemical" . + "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally."^^ . + . + "http://purl.obolibrary.org/obo/AAO_"^^ . + "classification" . + . + . + "^\\d+$"^^ . + . + "dna" . + . + . + . + "false"^^ . + . + "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"^^ . + . + . + . + . + "software engineering" . + "GLDS-141"^^ . + . + "functional genomics" . + . + . + "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc."^^ . + . + . + "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally."^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + . + "42840"^^ . + . + "biomedical science" . + "ontology" . + . + "wawong@gmail.com" . + . + . + "Entrez Gene" . + . + . + "rgd.qtl" . + "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1"^^ . + "inbred rat strain" . + . + . + "https://biopragmatics.github.io/providers/goche/$1"^^ . + . + . + . + . + . + . + . + . + "Marijane White" . + _:N81e62e4253624b5f99ab3c6a630b2315 . + . + "false"^^ . + . + . + "0000411"^^ . + "false"^^ . + . + "GARD" . + "ebisc" . + . + . + . + . + . + . + "http://genomics.senescence.info/genes/details.php?id=$1"^^ . + "^\\d+$"^^ . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + "https://europepmc.org/article/CBA/$1"^^ . + . + "ComplexPortal" . + "protein" . + . + "false"^^ . + . + . + "https://www.ebi.ac.uk/intact/interaction/$1"^^ . + "^\\d{7}$"^^ . + "^[8-9]\\d{3}(/[0-3])?$"^^ . + . + . + . + "life science" . + . + . + . + "interaction" . + . + . + . + . + "^UMIN\\d+$"^^ . + "CAL0003079"^^ . + . + "An ontology of minimum information regarding potential drug-drug interaction information."^^ . + "biodiversity" . + . + . + "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac="^^ . + "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products."^^ . + . + "obo" . + . + . + . + "civic.vid" . + . + "C138986"^^ . + . + . + "IRD Segment Sequence" . + . + . + "^ZDB\\-\\w+\\-\\d+\\-\\d+$"^^ . + . + . + . + "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid="^^ . + . + . + . + "http://purl.obolibrary.org/obo/EUPATH_"^^ . + "http://purl.dataone.org/odo/SENSO_"^^ . + "https://cropontology.org/rdf/CO_320:$1"^^ . + "00005643"^^ . + . + "subject agnostic" . + "http://www.chemspider.com/inchikey=$1"^^ . + "243002_at"^^ . + . + "Descriptive Ontology for Linguistic and Cognitive Engineering" . + . + . + . + . + "Spider Ontology" . + . + "^\\d+$"^^ . + . + . + . + "pspub" . + . + . + . + . + "^[0-9]{12}$"^^ . + . + "The Behaviour Change Intervention Ontology" . + . + . + . + . + . + "orthology assignment" . + . + . + "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name="^^ . + "earth science" . + . + "sedml.language" . + . + "FlyMine Chromosome Band" . + "interaction" . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . + . + . + "AICARTRANSIMPCYCLO-CPLX"^^ . + "27223"^^ . + . + . + . + . + . + . + . + "celia.michotey@inrae.fr" . + "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum="^^ . + . + . + "eagle-i" . + . + . + . + . + . + . + . + "metatlas.metabolite" . + "developmental biology" . + . + . + . + "03yrm5c26"^^ . + . + "molecule" . + . + "obo" . + . + . + "pharmacy" . + . + . + . + . + "mge" . + . + . + "false"^^ . + "GlycoPOST" . + "CTRI/2023/04/052053"^^ . + . + . + "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."^^ . + . + . + "https://pharmacodb.ca/tissues/$1"^^ . + . + "clinical veterinary medicine" . + "DAP000773"^^ . + . + "false"^^ . + . + "Semantic Web Context" . + . + . + . + . + . + "CLO" . + . + . + "HsapDO:0000004"^^ . + "http://data.crossref.org/fundingdata/funder/10.13039/$1"^^ . + "^\\d+$"^^ . + . + . + "true"^^ . + "https://www.arabidopsis.org/servlets/TairObject?type=locus&name="^^ . + "biology" . + . + . + "20021"^^ . + "vmc" . + . +_:Ndd908229bd3749e79cfbb01b1a38ec97 "sschurer@med.miami.edu" . + . + "https://s3.us-east-2.amazonaws.com/lg.cede/"^^ . + "protein" . + "false"^^ . . - . - . - . - "imotdb" . - "Antibiotic Resistance Genes Database" . - "sequence" . - . - . - . - . - . - . - "P01116"^^ . - . - . - "SCTID_2010_1_31" . - "tair.gene" . - . - . - "http://bigg.ucsd.edu/models/universal/metabolites/$1"^^ . - . - . - "sasbdb" . - "Higher order grouping of Pfam families"^^ . - . - . - . - . - . - . - "tarbase" . - "^\\d+$"^^ . - . - "obo" . - . - . - "1484"^^ . - "Gmelins Handbuch der anorganischen Chemie" . - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1"^^ . - . - . - "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone="^^ . - . - . - . - "gramene.protein" . - "genome" . - "^\\d+$"^^ . - "http://purl.uniprot.org/annotation/"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "small molecule" . - . - . - . - . - . - "pandey@jhmi.edu" . - . - . - "Benchmark Energy & Geometry Database" . - "1199"^^ . - . - . - "http://fossilworks.org/?a=referenceInfo&reference_no="^^ . - . - "15"^^ . - "AphidBase Transcript" . - . - . - . - . - "life science" . - . - . - . - "obo" . - "Al Kikhney" . - "iNaturalist Observation" . - "seinet" . - "infectious" . - . - . - "https://grants.nih.gov/stem_cells/registry/current.htm?ID="^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/FOODON_"^^ . - "https://bbp.epfl.ch/nexus/web/studios/public/$1"^^ . - . - "obo" . - . - "false"^^ . - . - . - "MIRBASEM" . - . - . - . - "col" . - . - . - . - . - . - "Tim Robertson" . - "^\\d{7}$"^^ . - . + . + "false"^^ . + "Dublin Core Metadata Initiative Terms" . + . + "ecto" . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/"^^ . + . + . + . + . + "^(data|topic|operation|format)\\_\\d{4}$"^^ . + "life science" . + "http://rebase.neb.com/rebase/enz/$1.html"^^ . + . + . + "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1"^^ . + . + "false"^^ . + "fossilworks.taxon" . + . + "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id="^^ . + "https://bioregistry.io/dragondb.protein:"^^ . + "Flybase Cell Line" . + "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$"^^ . + . + "cas_id" . + "ontology" . + "obo" . + . + . + . + . + "door" . + "paleodb" . + _:Ne20487b8cfc54ee38941aca52616a216 . + . + "STOREDB at University of Cambridge" . + "^GPST[0-9]{6}$"^^ . + . + "nsv3875336"^^ . + . + "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref="^^ . + . + . + "false"^^ . + . + . + . + . + "sebastien.moretti@sib.swiss" . + . + "genomics" . + . + "Pigeonpea ontology" . + "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n"^^ . + . + "Person"^^ . + "conferences" . + . + . + . + . + . + "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" . + . + . + . + "GCF_000001405"^^ . + . + . + "false"^^ . + "10020.2"^^ . + "life science" . + . + . + "http://purl.obolibrary.org/obo/BCO_$1"^^ . + . + . + . + "false"^^ . + "Miguel A. Fortuna" . + "botany" . + . + . + . + . + . + . + . + "SNOMEDCT" . + "^JCGG-STR\\d{6}$"^^ . + . + "functional genomics" . + "ApiDB_PlasmoDB" . + "hhe@ebi.ac.uk" . + . + . + "NCBI_Taxon_ID" . + . + . + . + "true"^^ . + . + "false"^^ . + . + . + . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . + . + . + "http://purl.obolibrary.org/obo/RNAO_$1"^^ . + . + "umbbd.pathway" . + . + . + . + . + . + . + "environmental science" . + . + "omics" . + . + . + "classification" . + . + . + . + . + . + "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$"^^ . + . + . + . + . + "0000001"^^ . + "icd9" . + "GCA_000155495.1"^^ . + . + . + . + . + "^\\d{7}$"^^ . + "embryonic stem cell" . + "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id="^^ . + . + "false"^^ . + "https://ssbd.riken.jp/database/project/"^^ . + . + "emmo.cif" . + . + "PRIDE Project" . + . + . + . + . + . + . + . + "microRNA Ontology" . + . + . + . + "false"^^ . + . + . + . + . +_:N7c9c314d0f544ed4a266982796905960 "ncictcaehelp@mail.nih.gov" . + . + . + "subject agnostic" . + . + . + . + . + . + "Reference Sequence Collection" . + "^\\d+$"^^ . + . + . + "vandf" . + . + "E. coli Metabolite Database" . + "biomedical science" . + . + "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms."^^ . . - . - . - . - "^\\d+$"^^ . - . - . - . - . - "false"^^ . - . - . - "bandrow@gmail.com" . - . - "false"^^ . - . - "disease" . - . - . - "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways."^^ . - "SNOMEDCT_2010_1_31" . - . - "false"^^ . - . - . - "DepMap Cell Lines" . - . - . - . - . - . - . - "https://ximbio.com/reagent/"^^ . - . - . - . - . - "nkos" . - . - "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_"^^ . - "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"^^ . - . - . - . - "http://foodb.ca/compounds/$1"^^ . - "ACC-1"^^ . - "http://purl.obolibrary.org/obo/PCL_"^^ . - . - . - "sio" . - . - "1100107"^^ . - . - "obo" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . -_:N9278d875d4954bfe96e8c9fb58122b64 "Pierre Sprumont" . - . - "Literature references in Gramene"^^ . - . - . - "structure" . - "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1"^^ . - "^\\d+$"^^ . - "vfdb.genus" . - . - . - "https://scicrunch.org/resolver/RRID:NXR_"^^ . - "http://purl.obolibrary.org/obo/APO_$1"^^ . + . + . + "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications."^^ . . - . - . - . - "Kim Durante" . - . - "gene" . - . - . - "The pre-IND tracking number for submissions to the FDA"^^ . - . - . - "false"^^ . - . - "The Bioregistry's meta-registry"^^ . - . - . - . - . - . - "https://bioregistry.io/diseasesdb:"^^ . - . - "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . - "false"^^ . - . - . - "CIViC Disease" . - . - . - "interaction" . - "https://cropontology.org/rdf/CO_321:"^^ . - "^\\d{7}$"^^ . - "^\\d+$"^^ . - "This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data."^^ . - . - "false"^^ . - "Carissa Park" . - . - . - . - . - . - "cell line" . - . - . -_:N167e307fdbd04948979ace60f0f6d68e "helpdesk@cropontology-curationtool.org" . - . - "false"^^ . - "biotools" . - . - "^[WAICV]\\d{2,}$"^^ . - . - "http://www.ontobee.org/ontology/$1" . - . - . - "false"^^ . - . - . - "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999)."^^ . - "F-SNP" . - . - "https://www.animalgenome.org/CorrDB/q/?id=CorrID:$1"^^ . - . - . - "identifier for chemicals linked to information on occurrence in plants"^^ . - . - "https://easychair.org/cfp/$1"^^ . - "plant" . - . - "false"^^ . - . - . - "https://cropontology.org/rdf/CO_340:$1"^^ . - . - . - . - . - "pibase" . - "metabolomics" . - . - . - "classification" . - . - . - . - . - . - . - "ncats.drug" . - . - . - "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions."^^ . - . - "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."^^ . - "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt="^^ . - "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1"^^ . - "obo" . - "CH_001923"^^ . - "Biological Expression Language" . - . - . - . - . - . - . - . - . - . - "transgene" . - "^\\d+$"^^ . - "Foundational Model of Anatomy" . - . - . - . - . - . - "ico" . - "true"^^ . - . - "molecule" . - . - . - "hbvar" . - . - . - . - . - . - . - "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."^^ . - . - . - . - . - . - . - "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/"^^ . - . - "gene" . - . - "^\\d+$"^^ . - . - . - . - . - . - "phismith@buffalo.edu" . - "https://pubchem.ncbi.nlm.nih.gov/substance/$1"^^ . - . - "ontology" . - . - . - . - . - "The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors."^^ . - . - "subject agnostic" . - . - . - "http://www.w3.org/1999/02/22-rdf-syntax-ns#"^^ . - . - . - "https://bioregistry.io/cst.ab:"^^ . - "http://purl.obolibrary.org/obo/OBCS_"^^ . - . - . - . - . - "Medaka Developmental Stages" . - . - . - . - "T3D0001"^^ . - . - "biology" . - . - . - "0000001"^^ . - . - . - . - "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl."^^ . - . - . - . - . - "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]"^^ . - "^KIAA\\d{4}$"^^ . - "https://glytoucan.org/Structures/Glycans/$1"^^ . - . - . - "^\\w+$"^^ . - "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?"^^ . - "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1"^^ . - . - . - . - . - "http://bacmap.wishartlab.com/organisms/$1"^^ . - "GitHub Issue" . - . - "false"^^ . - "classification" . - . - "false"^^ . - . - . - . - . - "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels."^^ . - . - . - . - . - . - . - "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)"^^ . - "ShiBASE" . - . - _:N7601a7cf89f14dbb930c2ae48240994c . - . - . - . - . - . - . - . - . - . -_:Nb3677b93e9364253a0a9a9c51e4ac0c6 "info@who.int" . - . - . - "pathway" . - . - "^\\d+$"^^ . - "proteomics" . - . - . - "Stemcell Knowledge and Information Portal" . - "https://biopragmatics.github.io/providers/cvx/"^^ . - "Cell line databases/resources"^^ . - "^[1-9]\\d{0,5}$"^^ . - . - . - . - . - "conoserver" . - . - . - . - . - "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_"^^ . - "genatlas" . - . - . - . - "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId="^^ . - "anatomy" . - "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"^^ . - . - "http://purl.obolibrary.org/obo/GO_$1"^^ . - . - . - . - . - . - . - . - "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1"^^ . - "false"^^ . - "genomics" . - . - . - . - . - . - . - "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype."^^ . - . - "Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys."^^ . - . - . - . - . - . - . - "https://ssbd.riken.jp/database/project/$1"^^ . - . - . - . - . - "0000086"^^ . - . - "ctcae" . - "http://purl.org/obo/owlEOL_"^^ . - . - "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid="^^ . - . - "transcriptomics" . - . + "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain"^^ . + . + . + . + . + . + . + "PharmacoDB Tissues" . + "^GCA_[0-9]{9}(\\.[0-9]+)?$"^^ . + . + "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"^^ . + . + . + . + "0000004"^^ . + . + "DrugBank Metabolite" . + . + . + . + . + . + . + . + . + "NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."^^ . + "Sue Bello" . + "false"^^ . + . + "https://bioregistry.io/discoverx:"^^ . + . + "ontology" . + "https://books.google.com/books?id="^^ . + "http://purl.obolibrary.org/obo/COVIDO_$1"^^ . + "http://www.w3.org/ns/prov#$1"^^ . + "life science" . + . + "hgnc.family" . + . + . + . + . + . + . + "http://www.drugbank.ca/drugs/"^^ . + . + . + . + . + . + . + . + . + . + . + . . - . - . - . - . + . + . + . + "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . + "false"^^ . + . + . + "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." . + . + . + . + . + "false"^^ . + "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland."^^ . + . + . + "Plant Anatomy Ontology" . +_:N94ef09fe5186469496b5929a73d32bf9 "helpdesk@cropontology-curationtool.org" . + "translation_language"^^ . + . + "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." . + . + . + . + . + . + . + "obo" . + "RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments."^^ . + . + "^NONHSAG\\d{5}$"^^ . + "false"^^ . + "Long Term Ecological Research Controlled Vocabulary" . + . + . + "obo" . + . + "013681"^^ . + . + "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid="^^ . + "iceberg.ime" . + "Mechanism, Annotation and Classification in Enzymes" . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "^[1-9][0-9]*$"^^ . + "dna" . + . + . + . + . + . + . + "Xenopus Phenotype Ontology" . + . + . + . + . + . + "genetics" . + "2gc4"^^ . + . + "^[1-9][0-9]*$"^^ . + . + "https://w3id.org/babelon/$1"^^ . + . + . + "051"^^ . + . + . + "SugarBind" . + "life science" . + . + . + . + . + . + . + . + . + . + "Anatomy, development and life cycle stages - planula, polyp, medusa/jellyfish - of the cnidarian hydrozoan species, Clytia hemiphaerica."^^ . + . + . + "ontology" . + . + . + "false"^^ . + . + "An ontology that enables characterization of the nature or type of citations, both factually and rhetorically."^^ . + . + "spike.map" . + . + . + . + "false"^^ . +_:Ndd908229bd3749e79cfbb01b1a38ec97 "Stephan Schurer" . + . + "taxonomy" . + . + "KYinno cell lines" . + . + . + . + . + "ontology" . + . + . + . + "PiroplasmaDB" . + . + "obo" . + . + . + . + "ised" . + "chemistry" . + . + "MatrixDB" . + "Nicole Vasilevsky" . + . + . + . + . + "CPD-10330"^^ . + . + "xl" . + . + "false"^^ . + "67"^^ . + . + . + "obo" . + "Simple Modular Architecture Research Tool" . + "genetics" . + . + . + . + "http://purl.obolibrary.org/obo/OBA_"^^ . + . + . + . + . + . + "A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data."^^ . + "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines"^^ . + "classification" . + . + . + "shex" . + . + . + . + . + . + . + "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." . + "gene" . + "National Repository of Fish Cell Lines" . + . + "biomedical science" . + . + "The World-2DPAGE database" . + . + "cabri" . + . + "G00054MO"^^ . + . + . + . + "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi."^^ . + "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$"^^ . + . + . + . + . . - . - "ruili.huang@nih.gov" . - "gene expression" . - . - . - . - . - "Database of Interacting Proteins" . - "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1"^^ . - . - . - "Unified Code for Units of Measure" . - . - . - "life science" . - "jesper.friis@sintef.no" . - "http://www.pantherdb.org/panther/family.do?clsAccession="^^ . - "obo" . - "^\\w+$"^^ . - "6038"^^ . - "https://identifiers.org" . - . - . - "life sciences" . - . - "biochemistry" . - . - "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology."^^ . - "http://topdb.enzim.hu/?m=show&id="^^ . - "http://purl.obolibrary.org/obo/OMRSE_"^^ . - "gnpis" . - "http://id.who.int/icd/entity/$1"^^ . - . - "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons."^^ . - . - . - "AU124"^^ . - . - . - . - . - "https://www.picb.ac.cn/limore/cellLines/single?para=$1"^^ . - "embryonic stem cell line" . - "https://www.ncbi.nlm.nih.gov/clinvar/variation/"^^ . - . - . - "false"^^ . -_:N8ac8ba2b4326434e857290d3799d8f7a "custserv@nlm.nih.gov" . - . - . - . - "fortuna@ebd.csic.es" . - "regulation" . - . - . - . - . - . - . - . - "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas."^^ . - . - . - . - . - "http://www.w3.org/ns/adms#"^^ . - "https://glytoucan.org/Structures/Glycans/"^^ . - "0007807"^^ . - "label"^^ . - "variants" . - . - . - . - "1"^^ . - "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1"^^ . - . - . - . - . - . - . - "false"^^ . - "Christian-Alexander Dudek" . - "false"^^ . - . - . - . - . - "GFAM" . - . - . - . - "Amos Bairoch" . - "ontology" . - "surjeet.arya@uky.edu" . - . - "^(bmr|bmse|bmst)?[0-9]{1,6}$"^^ . - "^DIP(\\:)?\\-\\d{1,}[ENXS]$"^^ . - . - . - "http://substrate.burnham.org/protein/annotation/$1/html"^^ . - . - "protein" . - "knowledge and information systems" . - . - . - . - . - "Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]"^^ . - . - . - "Mouse Developmental Anatomy Ontology with Theiler Stage" . - . - . - . - "^5\\d{4}$"^^ . - . -_:Ndb2ef7d265d64641aedff7e10678a2d4 "helpdesk@cropontology-curationtool.org" . - . - "A vocabulary and ontology repository for agronomy and related domains." . - . - "false"^^ . - "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . - "4140"^^ . - "3403"^^ . - . - "g.gkoutos@bham.ac.uk" . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - "scopus.author" . - . - . - "nstd102"^^ . - . - . - "false"^^ . - . - . - . - "miapa" . - "uberon"^^ . - . - . - . - . - . - . - . - . - "https://www.brenda-enzymes.de/ligand.php?brenda_group_id="^^ . - "^\\d+$"^^ . - "ontology" . - . - . - "alayne.cuzick@rothamsted.ac.uk" . - "Bioregistry" . - . - . - . - . - . - . - . - . - . - . - "subject agnostic" . - . - . - . - . - . - "life science" . - "MycoBrowser smegmatis" . - "^\\d+$"^^ . -_:N06dae87cab9f4b78b60ddc858172f693 "chebi-help@ebi.ac.uk" . - "false"^^ . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - "IUPHARfam" . - . - "false"^^ . - "false"^^ . - . - "dictybase.est" . - . - . - "ontology" . - . - "botany" . - . - "http://purl.obolibrary.org/obo/CMO_"^^ . -_:Nea597ba9607343dfad7d0285b1773c07 "evoc@sanbi.ac.za" . - "has URI pattern" . - "Organization" . - "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$"^^ . - . - . - "proco" . - . - . - . - . - . - . - "^\\d+$"^^ . - "tair.locus" . - . - "0000080"^^ . - "NCBI Gene Expression Omnibus" . - . - . - . - "https://w3id.org/faircookbook/"^^ . - "http://uri.neuinfo.org/nif/nifstd/oen_"^^ . - . - "0000001"^^ . - . - . - "https://e-cyanobacterium.org/bcs/rule/$1"^^ . - . - . - "https://registry.identifiers.org/registry/$1"^^ . - "https://bioregistry.io/cnrs:"^^ . - . - . - . - "http://purl.obolibrary.org/obo/LIPRO_$1"^^ . - . - . - . - "ontology" . - . - . + . + . + . + . + . + . + . + . + "ricecyc" . + "genetics" . + . + . + . + . + . + "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma."^^ . + . + . + . + "obo" . + . "human" . - . - . - . - . - . - . - . - . - . - . - . - "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease"^^ . - . - . - . - "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences."^^ . - . - "inhand" . - . - . - . - . - "http://nava.liacs.nl/cgi-bin/nava.py?id="^^ . - . - . - "ontology" . - . - . - . - "International Protein Index" . - . - . - . - . - . - "Trushar Shah" . - "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"^^ . - "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables"^^ . - . - . - "epidemiology" . - . - "dna" . - . - . - . - . - . - . - "false"^^ . - . - . - "^\\d+$"^^ . - . - "http://www.innatedb.ca/getGeneCard.do?id="^^ . - . - "https://bioregistry.io/cst:"^^ . - "GlycoNAVI" . - . - . - . - . - . - . - . - . - "gene expression" . - . - . - "human" . - . - . - . - . - . - . - . - . - "ctd.chemical" . - . - . - . - "metabolomics" . - "http://purl.obolibrary.org/obo/CIDO_$1"^^ . - "protein" . - . - "gmd.gcms" . - "biomaterial supply resource" . - "http://purl.obolibrary.org/obo/EHDAA2_"^^ . - . - . - "^[a-zA-Z0-9_\\.]+$"^^ . - . - "life science" . - "false"^^ . - . - . - "goeco" . - . - "https://web.expasy.org/cellosaurus/" . - "ontology" . - "false"^^ . - "https://discover.pennsieve.io/package/$1"^^ . - . - . - . - "rxno" . - "https://cordis.europa.eu/project/id/"^^ . - . - . - . - . - "anatomy" . - "http://edamontology.org/operation_"^^ . - . - "A registry of life science prefxes"^^ . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - "^PF\\d{5}$"^^ . - . - "life science" . - . - _:Nc5c44dad323647e49e9b04c786ba774e . - . - . - . - "https://www.biorxiv.org/content/10.1101/$1"^^ . - . - "dragondb.protein" . - "http://multicellds.org/MultiCellDB/$1"^^ . - . - . - "http://www.whocc.no/atc_ddd_index/?code="^^ . - "structure" . - "life science" . -_:N167e307fdbd04948979ace60f0f6d68e "Crop Ontology Helpdesk" . - "ons" . - . - . - . - . - . - "metatlas.metabolite" . - "biomedical science" . - "rlwalls2008@gmail.com" . - "^\\d{8}$"^^ . - "MIMIC III Database" . - . - . - . - "false"^^ . - "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1"^^ . - . - . - . - "ontology" . - . - . - . - . - "biology" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/HOM_"^^ . - "zinc" . - . - . - "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts."^^ . - . - . - "Probes and Drugs" . - "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity."^^ . - . - "PA131"^^ . - "ogsf" . - . - . - . - . - "Handle" . - . - . - . - "dbg2introns" . - "DBCOND0066902"^^ . - "development" . - "Cotton ontology" . - . - "FishBase" . - . - . - . - "issn" . - . - . - "ontology" . - . - . - "enzyme" . - "^PKDB[0-9]{5}$"^^ . - . - "Name-to-Thing" . - . - . - . - . - . - "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId="^^ . - . - . - . - "ontology" . - . - "Environment Ontology for Livestock" . - "d4akea1"^^ . - . - . - . - . - . - . - "doi" . - . - "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."^^ . -_:N7c54b74df1bf4d98878dd82a0b518dd4 "J.Bard@ed.ac.uk" . - . - "false"^^ . - . - . - . - . - . - "rdf" . - . - "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element."^^ . - . - . - . - "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$"^^ . - . - "http://purl.obolibrary.org/obo/PAO_"^^ . - "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors."^^ . - . - "An ontology for glycans based on GlyTouCan, but organized by subsumption."^^ . - "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products."^^ . - . - . - . - . - . - . - . - "Rice Genome Annotation Project" . - . - "reproduceme" . - . - . - . - "NCITt" . - . - "false"^^ . - . - . - . - . - "false"^^ . - "pmap.cutdb" . - . - "Animal TFDB Family" . - . - "Human Ancestry Ontology" . - . - "ontology" . - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:"^^ . - . - . - . - "transcriptomics" . - "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. The CIViC Assertion (AID) summarizes a collection of Evidence Items (EIDs) that covers predictive/therapeutic, diagnostic, prognostic or predisposing clinical information for a variant in a specific cancer context. CIViC currently has two main types of Assertions: those based on variants of primarily somatic origin (predictive/therapeutic, prognostic, and diagnostic) and those based on variants of primarily germline origin (predisposing). When the number and quality of Predictive, Prognostic, Diagnostic or Predisposing Evidence Items (EIDs) in CIViC sufficiently cover what is known for a particular variant and cancer type, then a corresponding assertion be created in CIViC."^^ . - "pscdb" . - . - . - "An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO."^^ . - . - "https://cropontology.org/rdf/CO_345:"^^ . - "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?"^^ . - "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5"^^ . - . - . - "ogg" . - "pdc.study" . - "MicrobeamManipulation"^^ . - . - . - . - . - . - . - "hypercldb" . - . - "Adverse Event Reporting Ontology" . - . - . - . - "nuclearbd" . - . - "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$"^^ . - "http://antibodyregistry.org/AB_$1"^^ . - . - . - . - . - "gene" . - . - . - . - . - . - . - "Simon Cox" . - "Drosophila Genomics Resource Center" . - . - . - . - "http://drugcentral.org/drugcard/"^^ . - . - . - . - . - "MESH_SUPPLEMENTAL_RECORD_UI" . - . - . - "jla1@sanger.ac.uk" . - . - . - "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:"^^ . - . - "human disease model" . - "drugbank.salt" . - . - . - . - "ontology" . - . - . - "PD10000"^^ . - "false"^^ . - "Austrian Library Network" . - . - "Alvin Walker" . - "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1"^^ . - . - . - . - "ZFIN" . - . - "8cf84adb-b4db-4807-ac98-0004247c35df"^^ . - . - . - "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."^^ . - . - . - . - "envipath" . - "organic molecular chemistry" . - "This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)"^^ . - . - "false"^^ . - . - . - . - . - . - "^\\d+$"^^ . - "false"^^ . - . - . - . - . - . - . - "http://sweetontology.net/matrMineral/$1"^^ . - . - . - . - . - . - . - . - . - . - . - "http://birdgenenames.org/cgnc/GeneReport?id=$1"^^ . - . - . - "fly" . - . - . - . - . - . - . - . - "obo" . - "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id="^^ . - "Castor bean ontology" . - . - "http://purl.obolibrary.org/obo/ATO_"^^ . - . - . - "bactibase" . - . - . - . - . - . - "^2-s2\\.0-\\d+$"^^ . - "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId="^^ . - . - "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$"^^ . - "anatomy" . - "Jakob Voß" . - "structure" . - "neurophysiology" . - "chemistry" . - . - . - . - "obo" . - "false"^^ . - . - "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id="^^ . - . - . - . - "comparative genomics" . - . - "Medical Subject Headings" . - . - . - "false"^^ . - . - "https://www.findacode.com/code.php?set=ICD10PCS&c="^^ . - "clinical veterinary medicine" . - . - "omp" . - . - "uniprot.keyword" . - . - "false"^^ . - . - "MeSH 2013" . - "^UP\\d{9}$"^^ . - . - . - "false"^^ . - . - . - "https://foodb.ca/foods/$1"^^ . - . - "5UTR_107_ENST00000517291.2"^^ . - . - . - "CA981206459"^^ . - "false"^^ . - . - . - "obo" . - . - . - . - "^\\d+$"^^ . - "^[0-9]+$"^^ . - . - . - . - . - "false"^^ . - "National Science Foundation Award" . - "Zebrafish Information Network Gene" . - . - "http://purl.obolibrary.org/obo/EMAP_$1"^^ . - . - "^r\\d+$"^^ . - "phenomics" . - . - . - . - "https://www.thermofisher.com/antibody/product/$1"^^ . - . - . - . - "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)." . - . - . - "UM-BBD_reactionID" . - . - "^\\d+$"^^ . - "false"^^ . - "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information."^^ . - . - . - . - "safisher@upenn.edu" . - . - "^\\d+$"^^ . - . - . - "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome."^^ . - . - . - . - . - . - . - . - "3"^^ . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "^\\w.+$"^^ . - . - . - . - . - . - "The International Harmonization of Nomenclature and Diagnostic criteria" . - "NIF Standard Ontology: Subcellular Entities" . - . - . - . - "false"^^ . - "Experimental Factor Ontology" . - . - . - . - . - "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails."^^ . - . - . - . - . - "NeuroLex Anatomy" . - . - . - . - . - . - "protein" . - "topalis@imbb.forth.gr" . - . - . - . - . - . - "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations."^^ . - . - "SNOMEDCT_US_2015_03_01" . - . - . - "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."^^ . - "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies."^^ . - . - . - . - . - . - . - "http://noctua.geneontology.org/editor/graph/gomodel:$1"^^ . - . - . - "http://bioportal.bioontology.org/ontologies/$1"^^ . - "pdbe" . - . - . - . - . - "gomf" . - . - . - . - "NASC code" . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/VHOG_$1"^^ . - . - . - . - . + "ExAC Transcript" . + . + . + . + . + . + . + "false"^^ . + . + "^PD\\d{6}$"^^ . + . + . + . + . + . + "metascience" . + "medicine" . + "http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/$1/"^^ . + "https://github.com/biolink/biolink-model" . + . + . + . + . + "biology" . + . + . + "EcoCyc" . + . + "cell biology" . + . + "https://envipath.org/package/$1"^^ . + . + "ontology" . + . + . + "research" . + . + . + . + . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data."^^ . + . + . + . + "agriculture" . + "provenance"^^ . + "ChemSpiderID" . + "A user of FAIRsharing"^^ . + "Cross-linker reagents ontology" . + . + . + . + "false"^^ . + . + . + . + "^FR\\-FCM\\-\\w{4}$"^^ . . - . - . - "Pan African Clinical Trials Registry" . - "genomics" . - . - . - . - "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion."^^ . - . - "nemo2" . - "false"^^ . - . - "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases."^^ . - "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies)."^^ . - . - . - . - . - . - . - "false"^^ . - . - . - "Karen Eilbeck" . - . - . - . - "https://biopragmatics.github.io/providers/hba/$1"^^ . - "ontology" . - "https://biopragmatics.github.io/providers/dmba/"^^ . - . - . - "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors."^^ . - "UK Higher Education Statistics Agency" . - . - . - "16S rRNA gene database" . - . - . - . - . - "^\\d+$"^^ . - . - . - "^\\w\\d+$"^^ . - "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed."^^ . - "^\\d{7}$"^^ . - . - . - . - "biomedical science" . - "Rosemary Shrestha" . - . - . - . - "http://ecoportal.lifewatch.eu/ontologies/$1" . - "gxa.gene" . - "pubchem.classification" . - "^\\d+$"^^ . - . - "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]="^^ . - "microarray" . - "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc="^^ . - . - . - "comparative genomics" . - "Reaxys" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "functional genomics" . - "http://www.ncbi.nlm.nih.gov/clinvar?term="^^ . - "health science" . - . - . - . - . - . - "SRS086444"^^ . - . - . - . - . - . - "ClinVar Submission" . - . - "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO="^^ . - "http://purl.bioontology.org/ontology/VANDF/"^^ . - . - "Danielle Welter" . - . - "pharmacology" . - . - . - "hom" . - . - "anatomy" . - . - . - . - "Candida Genome Database" . - "https://www.langual.org/langual_thesaurus.asp?termid="^^ . - . - . - . - . - "nanotechnology" . - "^\\d{7}$"^^ . - . - "http://www.jcvi.org/charprotdb/index.cgi/view/$1"^^ . - . - . - "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera."^^ . - . - . - . - . - "uniprot/swiss-prot" . - "https://models.physiomeproject.org/workspace/"^^ . - "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . - . - "monique.zahn@sib.swiss" . - "http://erop.inbi.ras.ru/result2.php?PepName="^^ . - "http://purl.obolibrary.org/obo/TAHE_"^^ . - . - "^MCDS_L_[a-zA-Z0-9]{1,10}$"^^ . - . - . -_:N3592e45525ca4d49ad9426f35d117032 "Stephan Schurer" . - . - . - . - . - . - " Christos Louis" . - "NCIT" . - . - "dylan.mcgagh@magd.ox.ac.uk" . - . - "DisProt region" . - . - . - "molecules" . - . - "faseb list" . - . - . - . - "nlx" . - "https://www.ncbi.nlm.nih.gov/books/"^^ . - "false"^^ . - . - . - "^\\d{7}$"^^ . -_:Nc287de27a14b496ea3776eeac440e444 "heinrich.herre@imise.uni-leipzig.de" . - "00042"^^ . - . - "R00100"^^ . - . - . - . - "imr" . - "structural biology" . - "http://purl.obolibrary.org/obo/NOMEN_"^^ . - . - "gene" . - . - "molecule" . - . - . - . - . - . - . - . - . - . - "human" . - "registry" . - . - . - . - "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." . - . - "Simple Knowledge Organization System eXtension for Labels" . - "obo" . - . - . - . - "co_360" . - "Insect Cell Line Database" . - "ontology" . - . - "icd11" . - "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research."^^ . - "comparative genomics" . - . - "^\\d+$"^^ . - "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1"^^ . - "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . - . - . - . - "http://www.icd9data.com/getICD9Code.ashx?icd9=$1"^^ . - "http://standards.iso.org/iso/15926/part14/"^^ . - . - . - . - . - "https://reactome.org/content/detail/$1"^^ . - . - . - . - "datf" . - "^[A-Za-z0-9\\-\\/]+$"^^ . - "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1"^^ . - "http://www.gramene.org/db/literature/pub_search?ref_id="^^ . - . - "^[AEP]-\\w{4}-\\d+$"^^ . - "http://purl.obolibrary.org/obo/MICRO_"^^ . - . - . - . - . - . - . - . - "structure" . - "https://aopwiki.org/relationships/$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "http://purl.org/spar/pwo/"^^ . - . - . - . - . - . - . - "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."^^ . - . - . - "genomics" . - . - "lbctr" . - . - "false"^^ . - "biology" . - "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences."^^ . - "Provenance, Authoring, and Versioning Vocabulary" . - . - "false"^^ . - . - "MTBLS1"^^ . + "fairsharing.user" . + . + . + . + "Core Ontology for Biology and Biomedicine" . + . + . + . + . + . + . + . + "DailyMed" . + . + . + . + . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$"^^ . + . + "UDB000691"^^ . + . + "ontology" . + . + . + . + . + . + "rna" . + . + . + "false"^^ . + . + . + "Idan Gabdank" . + . + "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded"^^ . + . + . + . + . . - . - "DrugBank Target v4" . -_:N7ba3234bbb0040258a3439900b0e2440 "helpdesk cropontology" . - "statistics" . - . - . - . - "09200010"^^ . - . - "^m\\w+$"^^ . - "false"^^ . - . - "1000560"^^ . - . - "Werner Müller" . - "pathway" . - . - "skip" . - . - . - . - . - "https://gnomad.broadinstitute.org/variant/$1"^^ . - . - . - . - . - . - . - "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations."^^ . - . - . - . - . - . - "eagle-i resource ontology" . - "AntiBodies Chemically Defined database" . - "Bitbucket" . - . - "265"^^ . - . - "DRSC05221"^^ . - . - . - "0001011"^^ . - . - "EDAM Data" . - . - "http://www.genomesize.com/result_species.php?id=$1"^^ . - "biomedical science" . - "0278"^^ . - "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . - . - . - . - . - "false"^^ . - . - . - "Orientations of Proteins in Membranes Database" . - . - "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project."^^ . - . - "inaturalist.observation" . - "https://bacteria.ensembl.org/id/$1"^^ . - . - . - . - . - . - "NONHSAG00001"^^ . - . - . - "bioinformatics" . - . - . - "BioKC" . - . - . - . - . - . - . - "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression."^^ . - "life science" . - . - "Cell line databases/resources"^^ . - "Ontology of Vaccine Adverse Events" . - . - . - "false"^^ . - "false"^^ . - . - "ISCW007415"^^ . - . - . - . - . - . - "MGgn0008978"^^ . - "https://sciflection.com/"^^ . - "cognitive neuroscience" . - . - . - . - "biomodels.db" . -_:Na7005e8d9c2d4562a087947131137d39 "GenBank Support" . - . - "false"^^ . - "Genotype Ontology" . - "false"^^ . - . - . - . - . - . - . - "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$"^^ . - "false"^^ . - . - . - . - "physiology" . - "https://www.gwascentral.org/marker/"^^ . - . - . - "Drug Central" . - "ontology" . - "false"^^ . - "326705068"^^ . - . - "SRX000007"^^ . - "http://www.w3.org/ns/adms#$1"^^ . - . - . - "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . - . - . - . - . - . - "http://plugins.biogps.org/cgi-bin/wp.cgi?id="^^ . - "chemistry" . - . - "https://ensaiosclinicos.gov.br/rg/$1"^^ . - . - "comptox" . - "unipathway.reaction" . - . - . - "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]"^^ . - . - "1000001"^^ . - . - . - . - "Anatomical Entity Ontology" . - . - . - . - . - . - "^[A-Za-z-0-9_]+(\\@)?$"^^ . - . - . - . - . - . - . - . - . + . + . + . + . + . + . + "decipher" . + . + "NMR-instrument specific component of metabolomics investigations" . + . + "https://biopragmatics.github.io/providers/dhba/"^^ . + . + . + . + . + "https://scicrunch.org/resolver/RRID:AGSC_$1"^^ . + . + . + . + . + . + "chemdb" . + . + "ontology" . + . + . + . + . + . + . + "false"^^ . + . + "obo" . + . + . + "false"^^ . + . + "FunderRegistry" . + . + . + . + . + . + . + . + . + . + . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs."^^ . + . + "315.1"^^ . + . + "AGROVOC" . + . + . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)."^^ . + "ontology" . + "^KCT\\d+$"^^ . + . + . + . + "Rat Strain Ontology" . + . + . + . + . + "T039"^^ . + "BT20_BREAST"^^ . + . + . + . + . + "functional genomics" . + . + "Hector Escriva" . + "The Artificial Intelligence Ontology" . + "28789"^^ . + . + "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records."^^ . + . + "Southwestern Environmental Information Network" . + . + . + . + . + "http://purl.obolibrary.org/obo/CL_"^^ . + "EV_0100011"^^ . + "Lynn Schriml" . + . + "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]"^^ . + "^\\d+$"^^ . + . + . + "^[CN]*\\d{4,7}$"^^ . + . + . + . + . + "lang"^^ . + . + "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements."^^ . + . + . + . + . + . + . + "aop.relationships" . + . + . + "false"^^ . "http://www.pantherdb.org/panther/family.do?clsAccession=$1"^^ . - "Symposium"^^ . - . - . - "http://pax-db.org/#!species/"^^ . - . - "wormmart" . - "nlx.res" . - . - . - "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1"^^ . - "rs" . - "computational biology" . - . - . - "Morpheus model repository" . - "expression" . - . - . - "http://cell-lines.toku-e.com/Cell-Lines_$1.html"^^ . - . - "biomedical science" . - . - . - . - . - . - . -_:Nd9a3ed545fc949169d71f3ee1eee9f9e "wbug@ncmir.ucsd.edu" . - "http://purl.bioontology.org/ontology/HOIP/HOIP_"^^ . - . - . - . - . - "AD834"^^ . - "PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them."^^ . - "^SD\\d+$"^^ . - . - "http://purl.obolibrary.org/obo/OBCS_$1"^^ . - . - . - "Gramene Gene" . - . - . - . - . - . - "epidemiology" . - . - "goche" . - . - "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"^^ . - . - . - "obo" . - . - . - . - . - . - "Distributed Archives for Neurophysiology Data Integration" . - . - . - . - . - "https://gnomad.broadinstitute.org/variant/"^^ . - . - "Social Behavior in insects"^^ . - . - "Richard Cyganiak" . - "JCRB1355"^^ . - . - "https://drs.microbiomedata.org/objects/$1"^^ . - "false"^^ . - . - . - . - "obo" . - . - "false"^^ . - . - "Christopher Mull" . - . - "false"^^ . - . - . - . - "Food-Biomarker Ontology" . - . - "genomics" . - . - "protein" . - "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes."^^ . - . - "^[0-9a-zA-Z]+$"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/TXPO_$1"^^ . - "chromium"^^ . - . - "chemistry" . - . - . - "biomedical science" . - . - "https://doulix.com/constructs/"^^ . - . - . - . - . - . - "Cellosaurus identifeirs for publications, like Pubmed"^^ . - . - "21723"^^ . - "046-19"^^ . - _:N3b57495f01bb4011887043a296cc3f83 . - "SIGNOR-C41"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - "biomedical science" . - "^\\d+$"^^ . - "https://www.ncbi.nlm.nih.gov/snp/$1"^^ . - "mcourtot@gmail.com" . - . - . - . - "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/"^^ . - "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1"^^ . - . - . - . - . - "438782"^^ . - . - . - . - . - . - . - "life science" . - . - . - "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . - . - "http://ddinter.scbdd.com/ddinter/interact/"^^ . - "dron" . - "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"^^ . - . - "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/"^^ . - . - . - . - . - "nlx.dys" . - . - . - . - "^\\d+$"^^ . - . - "qtldb" . - "Erik van Nimwegen" . - . - . - . - . - "genomics" . - . - . - "false"^^ . - "^\\d{1,7}\\-\\d{2}\\-\\d$"^^ . - . - . - . - . - . - . - . - . - "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$"^^ . - "https://cropontology.org/rdf/CO_367:"^^ . - . - . - . - "false"^^ . - "Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology" . - . - . - "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database."^^ . - . - . - "The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies."^^ . - . - . - . - . - "BT20_BREAST"^^ . - "life science" . - . - . - "false"^^ . - "https://molmedb.upol.cz/mol/$1"^^ . - _:N61e212a4682e4665ab4cc6dd850a2aa6 . - . - "ontology" . - . - . - "TransportDB" . - "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"^^ . - . - "Célia Michotey" . - . - . - . - "stem cell" . - "^\\d+$"^^ . - . - . - . - . - . - "https://bioregistry.io/ppdb:"^^ . - "eVOC (Expressed Sequence Annotation for Humans)" . - . - "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research."^^ . - "false"^^ . - . - . - "00000d53-99bc-4d3e-8ed7-6dc358baccb7"^^ . - . - . - "false"^^ . - . - "ontology" . - "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. "^^ . - "Cell lines used in the Dependency Map (DepMap). Highly related to CCLE Cells."^^ . - "addexbio" . - . - . - "evolutionary biology" . - . - "0000072"^^ . - . - "^(ENSFM|ENSGTV:)\\d+$"^^ . - . - . - . - "ontology" . - "TrichDB" . - "Steven E. Wilson" . - . - . - . - "info@casrai.org" . - . - . - . - . - "VFG2154"^^ . - "EUCTR" . - "obo" . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/XLMOD_"^^ . - "false"^^ . - "false"^^ . - . - . - . - . - "ontology" . - "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it."^^ . - "^\\d+(-\\d+)?$"^^ . - . - . - . - . - . - "false"^^ . - "WD_Entity" . - "aero" . - . - . - . - "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1"^^ . - . - . - "gene" . - "STOREDB at University of Cambridge" . - . - . - . - . - "false"^^ . - "^\\d+$"^^ . - . - . - . - . - "ised" . - "Global Biodata Coalition - Global Core Biodata Resources" . - . - "jkissing@uga.edu" . - . - . - "health sciences" . - . - . - "Computer Retrieval of Information on Science Projects Thesaurus" . - "false"^^ . - "0116"^^ . - . - "invertebrate" . - . - . - "kegg.rclass" . - . - . - "Pathway Commons" . - "nikolaos.moustakas@catalysis.de" . - . - "https://www.glycoepitope.jp/epitopes/"^^ . - "Genetics Home Reference" . - "false"^^ . - "false"^^ . - . - "https://www.encodeproject.org/$1"^^ . - "genome" . - "small molecule" . - . - . - . - . - . - "^[m,M]{2}[0-9]{5}[0-9]*$"^^ . - "MassIVE" . - "IUPHARobj" . -_:N3b57495f01bb4011887043a296cc3f83 "Anita Ghebeles" . - "VHOG_RETIRED" . - "classification" . - . - . - . - . - . - . - . - . - . - "The Python Package Index (PyPI) is a repository for Python packages."^^ . - . - . + . + . + . + "COG Pathways" . + . + "evolutionary biology" . + . + "GlyTouCan" . + . + . + "Tohoku University cell line catalog" . + . + . + "^[SED]R[APRSXZ]\\d+$"^^ . + "has alternative prefix" . + . + "data management" . + . + "life science" . + . + . + . +_:N2c879c99261d461d9a37ca99cbbfcbb7 "rafael.goncalves@stanford.edu" . + "uniprot.location" . + "https://glyconavi.org/hub/?id="^^ . + . + . + . + "0001350"^^ . + "cd00400"^^ . . - . - . - "Mathias Uhlen" . - . - . - . - "false"^^ . - "biomedical science" . - . - "3000887619"^^ . - . - . - "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."^^ . - . - "Leafsnap" . - "biology" . - "dg5b0d" . - "A database-specific registry supporting curation in the Gene Ontology" . - "^\\d{7}$"^^ . - . - . - . - "The Bioinorganic Motif Database" . - . - "000912"^^ . - . - . - . - "false"^^ . - . - "Medical Subject Headings Vocabulary" . - "false"^^ . - . - "ohd" . - . - . - "IMGT/HLA human major histocompatibility complex sequence database" . - . - . - . - . - . - "https://medlineplus.gov/genetics/condition/$1"^^ . - "0000947"^^ . - . - "true"^^ . - . - "http://standards.iso.org/iso/15926/part14/$1"^^ . - . - "nucc.taxonomy" . - . - . - . - . - "^B\\d{5}$"^^ . - . - . - "DrugBank Salts" . - . - . - "false"^^ . - . - "obo" . - "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use."^^ . - . - . - . - "0000000"^^ . - "^.*/.*$"^^ . - "Patrice Buche" . - "57-27-2"^^ . - "abs" . - . - . - "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars."^^ . - . - . - "protein" . - . - . - "Cowpea Trait Dictionary in template v5 - IITA - August 2015"^^ . - . - . - . - . - . - . - "dna" . - "vertebrate" . - "araport" . - . - "iso.3166" . - "gene" . - . - "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease."^^ . - . - . - . - . - . - "^\\d+$"^^ . - "PSI Extended File Format" . - "Melanie Courtot" . - . - "https://books.google.com/books?id=$1"^^ . - . - "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#"^^ . - . - . - "biomedical science" . - "genomics" . - . - "0001079"^^ . - . - . - . - "^TB[1,2]?:[A-Z][a-z]?\\d+$"^^ . - . - . - . - "ArrayExpress Platform" . - . - "https://radlex.org/RID/"^^ . - . - . - . - . - . - . - . - "Simple Knowledge Organization System" . - . - "^\\d+$"^^ . - . - . - . - "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date."^^ . - . - . - . - . - . - . - "This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations."^^ . - . - "CGNC" . - . - . - . - "Enzo Life Sciences" . - . - . - . - . - . - . - "0000066"^^ . - . - . - . - . - . - "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . - "human" . - "drsbello@gmail.com" . - . - "^[\\w\\d\\.-]*$"^^ . - "CATH domain" . - . - "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1"^^ . - . - "Datasets around different cancer cell lines generated by the Broad Institute and Novartis"^^ . - . - . - . - . - . - . - . - . - . - "rna" . - . - . - "systems biology" . - "mosquito" . - . - . - . - . - . - "false"^^ . - "life science" . - . - . - . - . - "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia."^^ . - . - . - . - . - . - "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms."^^ . - . - "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2)."^^ . - "Open Tree of Life" . - . - "The anatomy of the Tick, Families: Ixodidae, Argassidae"^^ . - . - "^\\d+$"^^ . - . - "LINCS Protein" . - . - "July 2018"^^ . - . - "false"^^ . - . - . - . - . - . - "biomedical science" . - . - . - . - . - "These resources were listed in [Sharing biological data: why, when, and how](https://doi.org/10.1002/1873-3468.14067), which prompted further novel curation of the Bioregistry which included the addition of GenBank, Panorama Public, EMPIAR, and SSBD. It also prompted the curation of mappings to FAIRSharing when possible." . - . - "https://nanbyodata.jp/disease/NANDO:"^^ . - . - "^\\d+$"^^ . - . - . - "^[A-Z-_0-9]+$"^^ . - . - . - . - "NeuroLex Dysfunction" . - "Thorsten Henrich" . - "EBI-2307691"^^ . - "zachll@umich.edu" . - "NXPFA" . - "kegg" . - "false"^^ . - "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research)."^^ . - "biomedical science" . - "structure" . - "false"^^ . - "http://purl.obolibrary.org/obo/PLO_"^^ . - . - "https://www.worldcat.org/oclc/"^^ . - . - "http://purl.obolibrary.org/obo/BFO_"^^ . - "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1"^^ . - . - . - "life science" . - . - . - "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis="^^ . - . - . - . - . - . - "false"^^ . - . - "false"^^ . - . - . - . - . - "protein" . - . - "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_"^^ . - . - "http://purl.obolibrary.org/obo/SCDO_"^^ . - . - . - "insertion" . - . - "0000079"^^ . - "life science" . - . - . - . - . - "inxight-drugs" . - . - . - . - . - "http://purl.obolibrary.org/obo/SO_$1"^^ . - . - . - "EHDAA2_RETIRED" . - . - . - "protein" . - . - . - . - "phylogenetics" . - "false"^^ . - . - . - "Hathi Trust Digital Library" . - "https://www.ebi.ac.uk/intact/search?query=$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/ZFA_$1"^^ . - "300108/p3934_A-172"^^ . - . - . - "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets"^^ . - "http://purl.obolibrary.org/obo/TAHH_$1"^^ . - "true"^^ . - "false"^^ . - "bibliometrics" . - . - "sheriff@ebi.ac.uk" . - "natural science" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "ctd.gene" . - "brenda.ligand" . - "gene mapping" . - . - . - . - . - . - "SEED Reactions" . - "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)"^^ . - "Arabidopsis Information Portal" . - "^[A-Za-z0-9]+$"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "image" . - "345201101230312003"^^ . - "functional genomics" . - . - . - "obo" . - "ontology" . - . - . - "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location."^^ . - . - . - . - . - "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1"^^ . - . - . - "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)"^^ . - . - "The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web."^^ . - . - . - . - . - "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . - . - . - "false"^^ . - . - "^DP\\d{5}$"^^ . - . - "prints" . - . - . - . - "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information."^^ . - . - "FHIR United States Implementation Guides" . - . - . - . - . - "^MMAR\\_\\d+$"^^ . - "false"^^ . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1"^^ . - . - . - . - "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database"^^ . - . - "alignment" . - . - . - . - . - . - "cp390@cam.ac.uk" . - "false"^^ . - . - "^DI-\\d{5}$"^^ . - . - . - "huanglin36@mail.sysu.edu.cn" . - "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO."^^ . - . - . - . - "UPI000000000A"^^ . - . - . - "The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database."^^ . - . - "false"^^ . - . - . - . - "https://datalab.rwth-aachen.de/MINDER/resource/"^^ . - "^\\d{7}$"^^ . - . - . - . - "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information."^^ . - "anatomy" . - "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students."^^ . - . - . - "http://icd9cm.chrisendres.com/index.php?action=search&srchtext="^^ . - "http://purl.obolibrary.org/obo/MF_"^^ . - . - . - . - . - "structure" . - . - . + "false"^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + . + "^[A-Z0-9]+$"^^ . + "d4e2515"^^ . + . + "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"^^ . + "Metabolomics Standards Initiative Ontology" . + . + "false"^^ . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "false"^^ . + "astd" . + . + "GR_PROTEIN" . + . + "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process."^^ . + . + . + . + . + . + "false"^^ . + . + . + . + "David Sehnal" . + . + . + . + . + "http://purl.obolibrary.org/obo/VO_"^^ . + . + . + . + "AHR"^^ . + "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver."^^ . + . + "obo" . + . + . + . + "wwf.ecoregion" . + "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."^^ . + . + "https://www.grid.ac/institutes/$1"^^ . + "http://purl.org/sig/ont/fma/fma"^^ . + "http://purl.obolibrary.org/obo/GO_$1"^^ . + "protein" . + . + "Panorama Public" . + "Medical Dictionary for Regulatory Activities Terminology" . + . + . + "comparative genomics" . + "evolutionary biology" . + . + "anatomy" . + "Ontology of units of Measure" . + "http://purl.obolibrary.org/obo/MAT_$1"^^ . + "obo" . + . + . + "CIViC Therapy" . + "false"^^ . + "life science" . + . + . + . + . + "immunology" . + . + . + . + . + . + . + . + . + . + . + . + "anne.morgat@sib.swiss" . + "Diseases Database" . + . + "artificial intelligence" . + . + "Coriell Institute for Medical Research" . + . + "false"^^ . + . + . + . + . + "Person" . + "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)."^^ . + . + "obo" . + . + . + "agro" . + "datasubs@ebi.ac.uk" . + "false"^^ . + . + . + . + "https://www.ncbi.nlm.nih.gov/research/cog/cog/"^^ . + . + "slctr" . + "genatlas" . . - . - . - . - . - "co_334" . - "nlx.oen" . - . - . - . - . - "ontology" . - . - "molecules" . - . - . - . - . - "agriculture" . - . - "SNOMEDCT_US_2023_02_28" . - . - . - . - "true"^^ . - . - "gene" . - . - . - "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections."^^ . - . - . - . - "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments."^^ . - . - . - . - . - . - "http://igsn.org/$1"^^ . - . - "phipo" . - "repec" . - "bko" . - . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/GECKO_$1"^^ . - . - "dermo" . - "metabolomics" . - "planttfdb" . - "knowledge and information systems" . - . - "obib" . - "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . - . - . - "false"^^ . - "cas" . - . - . - "European Bank for induced pluripotent Stem Cells" . - . - . - "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$"^^ . - "false"^^ . - . - . - "true"^^ . - "life science" . - . - . - "true"^^ . - . - "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . - "duo" . - "PROV Namespace" . - "KESTREL Ontology" . - . - . - "http://www.chemspider.com/inchikey=$1"^^ . - "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A collection groups one or more individual uniquely identified cell lines, snapshots, or collections. Primary uses are times series (collections of snapshots), patient cohorts (collections of cell lines), and studies (collections of time series collections)."^^ . - "cryopreserved" . - . - . - . - "Genotype-Tissue Expression" . - . - . - "^\\d+$"^^ . - . - "Supplier of mice for research purposes. [from RRID]"^^ . - "^[0-9]+$"^^ . - "PIRSF000100"^^ . - "ontology" . - _:N9ff3b0b9e9be44da9da4229138535296 . - "TC" . - "subject agnostic" . - . - "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]."^^ . - . - . - . - . - . - . - . - . - "ComplexPortal" . - . - . - "hovergen" . - . - . - "NCI Pathway Interaction Database: Pathway" . - . - . - . - . - . - "https://www.ebi.ac.uk/chembl/cell_line_report_card/"^^ . - "^\\d{7}$"^^ . - . - . - "The Echinoderm Anatomy and Development Ontology" . - . - . - . - . - . - . - . - . - . - "Lentil ontology" . - "https://bioregistry.io/lrg:"^^ . - . - . - . - . - . - . - "biology" . - . - "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law."^^ . - "mmp.cat" . - . - . - "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699."^^ . - . - . - . - . - _:Nb7cba4c2ffc54d749f40667db69bc6d1 . - "Reactions in drugbank"^^ . - . - . - "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . - "m.a.laporte@cgiar.org" . - . - . - "ontology" . - . - "PyPI" . - "0000712_1"^^ . - . - . - . - "uniprot.db" . - . - "^[A-Z-a-z0-9]+$"^^ . - . - . - . - . - . - . - . - "embryo" . - . - . - . - "^\\d{6,7}$"^^ . - . - . - "^ENSGT\\d+$"^^ . - "http://leafsnap.com/species/$1/"^^ . - . - . - "false"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/DC_CL_$1"^^ . - "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database."^^ . - "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract)."^^ . - . - "^\\d+$"^^ . - . - . - . - . - . - "human geography" . - . - "https://bioregistry.io/skm:"^^ . - . - . - . - "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"^^ . - . - . - . - . - . - . - "gmd.profile" . - . - . - . - . - . - "502930"^^ . - "ontology" . - . - "bbtp" . - "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue="^^ . - . - "Costal and Marine Ecological Classification Standard" . - "NIAID ChemDB ID" . - . - . - "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"^^ . - "false"^^ . - . - "https://www.wormbase.org/species/c_elegans/rnai/"^^ . - "bpdb" . - "648028003"^^ . - . - "false"^^ . - "0000001"^^ . - "false"^^ . - . - . - . - . - "confident.event" . - . + . + "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1"^^ . + . + . + "sstoss" . + "^\\d{7}$"^^ . + "http://purl.obolibrary.org/obo/SIBO_$1"^^ . + . + "GeneCards" . + . + . + "A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state."^^ . + "^\\d{5,6}$"^^ . + "172"^^ . + . + . + "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments."^^ . + . + "biomedical science" . + . + "Encyclopedia of Life" . + . + "Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities."^^ . + "http://lipidbank.jp/cgi-bin/detail.cgi?id="^^ . + . + . + . + . + . + "https://www.ebi.ac.uk/pdbsum/"^^ . + . + . + . + "foodb.compound" . + . + "^\\d{7}$"^^ . + "https://knowledge.lonza.com/cell?id=$1"^^ . + . + "ontology" . + . + . + . + . + . + "Proteomics data and process provenance" . + . + . + . + "structure" . + "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format"^^ . + . + . + "1484"^^ . + "^\\d+$"^^ . + . + "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1"^^ . + . + "small molecule" . + . + . + "http://www.phosphosite.org/proteinAction.do?id="^^ . + "mhb120@gmail.com" . + . + "experimental animal" . + "ProDom" . + . + "^ACH-\\d+$"^^ . + "2-s2.0-0030770923"^^ . + . + "insdc" . + . + . + "E00002"^^ . + . + . + "Environmental conditions, treatments and exposures ontology" . + "http://www.pantree.org/node/annotationNode.jsp?id=$1"^^ . + "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes."^^ . + . + . + "biomedical science" . + . + . + "gene" . + . + . + . + . + . + "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available."^^ . + . + "PSEEN0001"^^ . + "Yeast Genome Order Browser" . + . + . + . + "marine biology" . + . +_:N8085bf80823543a98709bfd02a116783 "helpdesk@cropontology-curationtool.org" . + . + "http://multicellds.org/MultiCellDB/"^^ . + "https://www.biolegend.com/Default.aspx?ID=6664&productid="^^ . + . + "mipmod" . + . + "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID="^^ . + . + . + . + . + "https://odc-sci.org/data/$1"^^ . + . "false"^^ . - . - "0001290"^^ . - . - . - . - . - "https://www.addexbio.com/productdetail?pid=$1"^^ . - . - . - . - . - "1868"^^ . - "environmental science" . - "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots."^^ . - . - "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . - . - . - "person" . - . - "https://www.eionet.europa.eu/gemet/en/concept/"^^ . - . - . - "^CE\\d{5}$"^^ . - "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds."^^ . - . - "Integrated Microbial Genomes Gene" . - . - "genetics" . - . - . - "ADA"^^ . - "DragonDB Protein" . - _:N2ccf485d4a424189ba97a59849c5d815 . - . - "https://www.alzforum.org/mutations/"^^ . - "ontology" . - "http://purl.obolibrary.org/obo/KISAO_$1"^^ . - . - . - "http://www.orpha.net/ORDO/Orphanet_"^^ . - . - . - . - . - . - "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/"^^ . - . - "^TTHERM\\_\\d+$"^^ . - . - . - "PRO_0000016681"^^ . - . - . - . - "Q2207226"^^ . - . - . - "GnpIS" . - "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae."^^ . - . - "http://www.pharmgkb.org/disease/"^^ . - "^\\d+$"^^ . - . - . - . - . - . - "AT1G01030.1"^^ . - . - "Jessica Kissinger" . - . - . - . - "http://www.signaling-gateway.org/molecule/query?afcsid="^^ . - . - "Hepatitis C Virus Database Project" . - . - . - "The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources."^^ . - "https://www.uniprot.org/tissues/$1"^^ . - . - "ontology" . - "Biosapiens Protein Feature Ontology" . - . - . - . - . - . - . - . - . - . - . - . - . - "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities"^^ . - "0005452"^^ . - . - . - . - . - "obo" . - . - . - . - "https://omim.org/MIM:PS$1"^^ . - "https://biopragmatics.github.io/providers/peff/$1"^^ . - . - "^\\d+$"^^ . - . - "https://www.hivreagentprogram.org/Catalog/HRPCellLines/$1.aspx"^^ . - . - . - . - "The VirOligo database (1) is part of an effort to provide methods suitable for assessing what viruses are present in samples. Such methods should faciliate studies of the spatial and temporal distribution of viruses and their diversity at any one time and place."^^ . - "false"^^ . - "SNOMEDCT_US_2016_03_01" . - "comparative genomics" . - . - "http://www.pathwaycommons.org/pc/record2.do?id="^^ . - . - . - "oral surgery" . - . - . - . - "genomics" . - . - . - . - "Affymetrix Probeset" . - "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF." . - "miw023@ucsd.edu" . - "Benjamin M. Gyori" . - . - . - "false"^^ . - "T30002"^^ . - "biomedical science" . - "https://bioregistry.io/metaregistry/ncbi/"^^ . - . - . - . - "Q9UKQ2"^^ . - . - . - . - "true"^^ . - "^\\d+$"^^ . - "aphidbase.transcript" . - . - "genome" . - . - . - . - "Spider Ontology" . - . - . - . - "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively."^^ . - "27267"^^ . - . - . - . - . - . -_:N399ec073fe08407c9358ec8cdfa97db1 "Stephan Schurer" . - . - . - . - . - "Transporter Classification Database" . - . - . - "^\\w+(\\_)?\\d+(\\.\\d+)?$"^^ . - . - "false"^^ . - "RHEA" . - "^[a-z]+(\\..*?)?$"^^ . - . - . - "http://www.kegg.jp/entry/"^^ . - "gold" . - "life science" . - "odc.tbi" . - . - . - . - "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification."^^ . - . - . - . - "structure" . - "oriental-cds@163.com" . - . - . + . + . + . + . + "BLL"^^ . + "torsten.schwede@unibas.ch" . + . + . + . + . + . + "biology" . + "gnomad" . + "gc" . + "^KIAA\\d{4}$"^^ . + "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . + . + "^\\d{7}$"^^ . + "^\\d+$"^^ . + . + "pathway" . + . + . + . + "paolo.romano@hsanmartino.it" . + . + _:N092d4e4b63024aba99662c1cea59992d . + . + . + "https://bitbucket.org/$1"^^ . + . + "development" . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information."^^ . + . + . + "ubprop" . + . + "Clinical Trials Information System" . + "edong@umich.edu" . + . + . + . + . + . + "^[1-9][0-9]*$"^^ . + "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id="^^ . + . + . + . + . + . + "FOOD00020"^^ . + . + "life science" . + "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands."^^ . + "0000858"^^ . + . + . + . + "^[0-9]+$"^^ . + . + . + "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."^^ . + . + . + "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation."^^ . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . . - . - . - "MSMEG_3769"^^ . - "animal physiology" . - "GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release)."^^ . - . - . - . - . - "P23298"^^ . - . - "ontology" . - . - . - . - "natural science" . - . - . - "dmba" . - . - . - . - . - . - "Python"^^ . - . - "AntWeb" . - . - . - . - . - . - . - "culture" . - . - "LNCRNADB" . - "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"^^ . - . - . - "https://swissmodel.expasy.org/repository/uniprot/"^^ . - "dna" . - . - . - . - "life science" . - "life science" . - . - . - "false"^^ . - . - . - . - . - "https://bioregistry.io/chemspider:"^^ . - . - "^G\\d+$"^^ . - . - "^\\d{7}$"^^ . - . - . - "Cell Lines in PubChem"^^ . - . - . - "true"^^ . - "An organization" . - "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . - "sgd.pathways" . - . - "http://genomics.senescence.info/genes/details.php?id=$1"^^ . - . - . - "false"^^ . - "128011350"^^ . - "^\\d+$"^^ . - "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome."^^ . - "neurobiology" . - "nucleotide" . - . - . - "pharmacogenomics" . - "Reaxys eMolecules" . - . - . - . - . - . - . - "false"^^ . - . - . - "false"^^ . - _:N8ac8ba2b4326434e857290d3799d8f7a . - "^\\S+$"^^ . - "itis" . - . - "Sorghum TDv5 - Oct 2019"^^ . - "genetree" . - . - . - . - "https://datacommons.org/browser/"^^ . - . - "http://purl.obolibrary.org/obo/XPO_$1"^^ . - . - . -_:N77a0b5ac24044f6e9515254331151ed1 "Hajo Rijgersberg" . - "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. "^^ . - "false"^^ . - . - "false"^^ . - . - . - . - . - . - . - "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea"^^ . - "software engineering" . - "protein" . - "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1"^^ . - "false"^^ . - "28"^^ . - "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org" . - . - . - . - . - "http://unite.ut.ee/bl_forw.php?nimi=$1"^^ . - . - "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB."^^ . - . - . - . - "Life cycle stages for Mus Musculus"^^ . - "ontology" . - . - . - . - "chmo" . - . - . - . - "proteomics" . - . - . - . - . - "MCDS_C_0000000001"^^ . - "https://www.ncbi.nlm.nih.gov/pubmed/"^^ . - . - . - . - . - "http://www.antweb.org/specimen.do?name=$1"^^ . - "https://www.nextprot.org/db/entry/$1"^^ . - . - "life science" . - . - . - . - . - . - "https://www.dsmz.de/collection/catalogue/details/culture/$1"^^ . - . - . - "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$"^^ . - . - . - "Ontology for Avida digital evolution platform" . - "SABIO-RK Compound" . - "rbrinkman@bccrc.ca" . - . - . - "http://purl.obolibrary.org/obo/OVAE_"^^ . - "true"^^ . - "sugarbind" . - "pns12@hermes.cam.ac.uk" . - . - "life science" . - "Hans Ienasescu" . - "Val Wood" . - . - "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types."^^ . - "artificial intelligence" . - . - . - . - . - . - "false"^^ . - "v2_1b0f158a-86e2-3887-b990-89e3cf2d9082"^^ . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - "false"^^ . - . - "37"^^ . - "pancreatic development" . - . - . - "http://snomed.info/id/"^^ . - . - . - "HMDB00001"^^ . - . - "Human Reference Atlas Common Coordinate Framework Ontology" . - "Legacy disease classes that later became MONDO"^^ . - "http://purl.obolibrary.org/obo/NIF_CELL_$1"^^ . - "false"^^ . - . - . - . - . - . - . - . - "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database."^^ . - "4776"^^ . - . - . - "Cell line collections"^^ . - "http://vocabularies.bridgedb.org/ops#$1"^^ . - . - "http://purl.obolibrary.org/obo/OMIABIS_$1"^^ . - . - . -_:Nbc75e354242843bbb93bfd83febcc1f4 "Crop Ontology Helpdesk" . - . - "plana" . - "pathobiochemistry" . - "marine biology" . - . - . - . - . - . - "viperdb" . - "MarRef" . - "false"^^ . - . - . - "false"^^ . - "clinical decision support systems" . - "false"^^ . - . - "miR-1"^^ . - _:N4b6f177c38fa4e3db98464cdf5ad524a . - . - . - . - . - "false"^^ . - . - "https://easychair.org/cfp/"^^ . + . + . + . + "false"^^ . + "genome" . + . + . + "false"^^ . + . + . + "rdf" . + . + "VEuPathDB ontology" . + . + "Don Gilbert" . + "iso15926" . + . + "https://pypi.org/project/$1"^^ . + "false"^^ . + "Mouse Tumor Biology Database" . + "false"^^ . + . + . + "true"^^ . + "Jim Balhoff" . + "5013"^^ . + "false"^^ . + . + "1398574"^^ . + . + . + . + "^BG\\d+$"^^ . + "marilyn.safran@weizmann.ac.il" . + "false"^^ . + . + . + "false"^^ . + . + "^\\d+$"^^ . + . + _:Nc976beb3ec914342b8df47f37d623366 . + . + . + . + . + . + "^\\d+$"^^ . + . + "ASPL0000349247"^^ . + "false"^^ . + "An identifier for a resource or metaresource." . + . + . + . + "false"^^ . + "genomics" . + "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)"^^ . + . + . + . + "^\\d{7}$"^^ . + "pathway" . + "WB_REF" . + . + . + . + . + "^PPR\\d+$"^^ . + "false"^^ . + "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)"^^ . + "https://ligandbook.org/package/$1"^^ . +_:Na482dcd018c24879b9da354f861d92d8 "Radiological Society of North America" . + . + . + . + "http://purl.obolibrary.org/obo/ATO_$1"^^ . + . + "anatomy" . + . + "ecolexicon" . + . + . + . + . + "A language for validating RDF graphs against a set of conditions"^^ . + . + . + . + . + . + "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web."^^ . + "hgnc.symbol" . + . + . + "Drosophila development" . + . + . + . + . + . + "2GC4"^^ . + "life science" . + . + . + . + . + "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . + . + . + "drug discovery" . + "life science" . + . + "scopus.publication" . + . + . + . + "disease" . + "biology" . + "protein" . + . + . + . + . + "^\\d{7}$"^^ . + "obo" . + . + . + . + . + "https://bionumbers.hms.harvard.edu/bionumber.aspx?id="^^ . + "MultiCellDS" . + . + . + "LSM-6306"^^ . + . + . + . + . + . + "obo" . + "genome" . + . + "en-GB"^^ . + . + . + "molecular biology" . + . + "https://www.gleif.org/lei/$1"^^ . + "sabiork.reaction" . + . + "Raymond Lee" . + "functional genomics" . + . + . + . + . + "^GCF_[0-9]{9}(\\.[0-9]+)?$"^^ . + . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4."^^ . + "https://senselab.med.yale.edu/ModelDB/ModelList?id="^^ . + "https://www.wormbase.org/species/c_elegans/rnai/$1"^^ . + "protein" . + "true"^^ . + "genomics" . + . + "Philip.Stroemert@tib.eu" . + . + . + . + . . - . - . - "Metabolic Atlas Metabolite" . - . - . - . - . - . - . - "23159291"^^ . - "false"^^ . - . - "http://www.allergome.org/script/dettaglio.php?id_molecule="^^ . - . - "http://purl.obolibrary.org/obo/DDANAT_"^^ . - . - "nlx.inv" . - . - . - . - . - "frim1"^^ . - "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1"^^ . - "fbtc" . - . - . - . - "http://purl.obolibrary.org/obo/MS_"^^ . - . - "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code="^^ . - . - "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules."^^ . - "LiceBase" . - . - "http://purl.obolibrary.org/obo/NIF_CELL_"^^ . - . - "false"^^ . - "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1"^^ . - "data mining" . - "biomedical science" . - . - "ontology" . - "Protein Alignment organised as Structural Superfamily" . - . -_:N11a4fc5962bd4af29b75e3ad1cf69ed3 "custserv@nlm.nih.gov" . - . - . - "NCIT_Thesaurus" . - . - . - "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."^^ . - . - . - . - "The Austrian Library Network (OBV) is the largest network of scientific and administrative libraries in Austria with 70 participants, representing more than 90 individual institutions - including the Austrian National Library, university libraries, the colleges of education, individual ministries, numerous technical colleges and other important collections."^^ . - . - "This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files."^^ . + . + "cheminformatics" . + . + . + "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1"^^ . + . + "http://purl.bioontology.org/ontology/HOIP/HOIP_"^^ . + "ISBN-13" . + "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1"^^ . + "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID="^^ . + "^[AEP]-\\w{4}-\\d+$"^^ . + "https://www.ncbi.nlm.nih.gov/medgen/$1"^^ . + . + . + "https://registry.bio2kg.org" . + . + . + . + . + . + . + . + . + "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer."^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/LOGGERHEAD_$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "^(ev\\:)?E\\d+$"^^ . + . + . + . + "npo" . + . + . + . + "nxr" . + . + . + . + "https://www.genome.jp/virushostdb/$1"^^ . + . + . + "http://opendata.inra.fr/ATOL/ATOL_$1"^^ . + . + . + . + "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes."^^ . + . + . + "http://www.pathoplant.de/detail.php?accNo=$1"^^ . + "false"^^ . + . + "cio" . + . + . + . + . + "ricenetdb.protein" . + "Sequencing Initiative Suomi" . + "cath" . + . + . + "life science" . + . + . + "subject agnostic" . + "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."^^ . + "life science" . + . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references models."^^ . + . + . + . + "life science" . +_:N267f4cae13944491a75150835ad69478 "johardi@stanford.edu" . + . + . + . + "anatomy" . + "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process."^^ . + . + . . - . - . - . - "Ontology of Host-Microbiome Interactions" . - "http://purl.org/ontology/bibo/"^^ . - . - "gold standard" . - . - "C. elegans development ontology" . - . - "false"^^ . - "^\\d+$"^^ . - . - . - "214100"^^ . - . - . - . - . - . - . - "An application ontology for use with miRNA databases."^^ . - . - "SED-ML model format" . - "BBA0001"^^ . - . - . - "subject agnostic" . - "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . - . - . - "functional genomics" . - "46"^^ . - "EMD-1001"^^ . - "ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS)."^^ . - "http://purl.obolibrary.org/obo/UPHENO_"^^ . - "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM="^^ . - "interpro" . - . - . - "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . - . - "false"^^ . - . - . - . - . - "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."^^ . - . - "A collection of molecular interaction maps and pathways involved in cancer development and progression with a focus on melanoma."^^ . - . - . - . - "https://www.ebi.ac.uk/metagenomics/projects/$1"^^ . - "P3DB Protein" . - . - . - . - "gaz" . - . - . - . - . - . - . - "false"^^ . - . - "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases."^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "https://biopragmatics.github.io/providers/pba/$1"^^ . - . - "true"^^ . - "false"^^ . - "false"^^ . - . - . - . - . - "Minimal Information about any Sequence" . - "57"^^ . - . - "FlyMine Chromosome Band" . - "gmelin" . - . - "ICARDA - TDv5 - Sept 2018"^^ . - . - . - "http://purl.obolibrary.org/obo/UO_"^^ . - . - . - . - "co_325" . - . - "^\\d{7}$"^^ . - "protcom" . - "coconut" . -_:N402ce698581442dcae89e6da831fb81e "INOH curators" . - . - . - "161671"^^ . - . - "prov" . - . - "gc_id" . - . - . - "spider" . - . - "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"^^ . - "BRIP1"^^ . - . - . - . - "https://rnacentral.org/rna/"^^ . - . - . - . - "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections."^^ . - . - "http://purl.obolibrary.org/obo/XAO_$1"^^ . - "nmr" . - . - "ontology" . - . - . - "co_324" . - . - "http://purl.obolibrary.org/obo/SOPHARM_$1"^^ . - . - "pombase" . - . - . - "obo" . - "co_339" . - . - "health science" . - . - "false"^^ . - "http://purl.obolibrary.org/obo/EUPATH_"^^ . - "obo" . - "Fossilworks Journal" . - . - . - . - . - . - "iso15926" . - "MESHPP" . - "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."^^ . - . - "1150"^^ . - . - "life science" . - . - . - . - . - . - "obo" . - . - . - "https://fairsharing.org/organisations/"^^ . - . - . - . - . - . - . - "go.chemicals" . - "https://www.pgscatalog.org/pgs/"^^ . - . - . - . - . - "https://www.ebi.ac.uk/ena/data/view/"^^ . - "Human Proteome Map Peptide" . - . - "true"^^ . - "^COG\\d+$"^^ . - . - "natural producs" . - . - "234"^^ . - "addiehl@buffalo.edu" . - . - . - "obo" . - "http://www.w3.org/2003/01/geo/wgs84_pos#$1"^^ . - . - . - . - "CGH Data Base" . - "https://cameochemicals.noaa.gov/chemical/$1"^^ . - "^IHW\\d+$"^^ . - . - . - . - . - "http://database.deepsolar.space:18080/dbs/nlfff/$1"^^ . - . - . - . - "srodriguez142857@gmail.com" . - . - . - . - "research" . - "https://swissmodel.expasy.org/repository/uniprot/$1"^^ . - . - . - . - . - "^\\d+$"^^ . - . - . - . - "earth science" . - . - "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"^^ . - . - "comparative genomics" . - . - . - "HPA000698"^^ . - . - . - . - . - . - . - . - . - "rdf" . - . - . - "0000144"^^ . - "^\\d+$"^^ . - "agro" . - . - "http://purl.obolibrary.org/obo/TTO_$1"^^ . - . - . - . - "http://www.fao.org/gsfaonline/additives/details.html?id="^^ . - . - "pharmacogenomics" . - "pancreatic islet function" . - "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML)."^^ . - "domain" . - "clyh" . - "http://www.drugtargetontology.org/dto/DTO_"^^ . -_:N8b7c2badcabc42edbc9571418c5a1d77 "helpdesk@cropontology-curationtool.org" . - "https://herv.img.cas.cz/s/"^^ . - . - . - . - "http://purl.obolibrary.org/obo/kestrelo_$1"^^ . - . - "health science" . - . - "horizon_discovery" . - "false"^^ . - "https://entomology.ca.uky.edu/content/$1"^^ . - . - . - . - . - . - . - . - "^HGVM\\d+$"^^ . - . - "12345"^^ . - . - . - . - "https://www.swisslipids.org/#/entity/SLM:$1"^^ . - . - "http://www.cathdb.info/cathnode/$1"^^ . - . - . - . - . - "https://lincs.hms.harvard.edu/db/antibodies/"^^ . - . - . - "gene" . - "pdbechem" . - . - . - . - . - . - . - . - "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$"^^ . - "catalog" . - . - "^\\d+$"^^ . - . - "All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes."^^ . - . - "http://bioinfo.lifl.fr/norine/result.jsp?ID="^^ . - "0000773"^^ . - . - "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."^^ . - "project management" . - . - . - . - . - . -_:Nfbd37b7f4f0847ebb98bf2d1b7f2fd90 "support@bioontology.org" . - . - . - "development" . - . - . - . - . - "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a"^^ . - "Ardan Patwardhan" . - "false"^^ . - "n.lenovere@gmail.com" . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data."^^ . + . + . + "^DI-\\d{5}$"^^ . + . + . + "Bacterial Tyrosine Kinase Database" . + "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"^^ . + "beetlebase" . + "Progenetix" . + . + "genomics" . + "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks."^^ . + . + "obo" . + "ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG)."^^ . + . + . + "chemrof" . + . + . + . + . + . + "GnpIS" . + . + . + . + "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . + "health science" . + "casspc" . + . + "earth science" . + . + . + . + "Clair Kronk" . + . + "false"^^ . + . + . + "false"^^ . + "1"^^ . + . + "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis."^^ . + . . - . - "2029"^^ . - . - . - "protein" . - . - . - . - "BOLD Systems taxon" . - "false"^^ . - . - . - . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/AEO_"^^ . - "the FAIR Cookbook" . - . - . - "447860"^^ . - . - "https://biopragmatics.github.io/providers/dmba/$1"^^ . - . - . - "true"^^ . - . - . - . - . - . - . - "https://mediadive.dsmz.de/medium/$1"^^ . - . - "^[-A-Za-z0-9\\_]*$"^^ . - "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound="^^ . - . - "70"^^ . - . - . - . - . - "ihw" . - . - . - . - . - . - "false"^^ . - "environmental science" . - . - . - . - . - "protein" . - . - . - . - "false"^^ . - . - . - . - . - . - "peco" . - "mim" . - "ontology" . - "http://topdb.enzim.hu/?m=show&id=$1"^^ . - "obo" . - . - . - . - "genomics" . - . - . - . - . - . - . - "help@emdatabank.org" . - "http://www.narcis.nl/publication/RecordID/"^^ . - . - . -_:Nb7cba4c2ffc54d749f40667db69bc6d1 "patricia.brooks2@cms.hhs.gov" . - . - "https://cells.ebisc.org/"^^ . - "^\\d{8}$"^^ . - "https://bitbucket.org/$1"^^ . - "biokc" . - "botany" . - . - "The ISRCTN registry is a primary clinical trial registry recognised by WHO and ICMJE that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)"^^ . - . - . - "http://purl.org/spar/datacite/$1"^^ . - . - . - . - "broad" . - "ontology" . - "http://purl.org/spar/pro/$1"^^ . - . - . - "subject agnostic" . - . - "National Center for Biotechnology Information Registry" . - . - . - "protein" . - . - "true"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library"^^ . - "true"^^ . - "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"^^ . - . - . - "false"^^ . - "ontology" . - . - "^\\w{2,4}\\d{5}$"^^ . - . - . - . - . - . - . - "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - . - "imanis" . - . - . - "dna" . - . - . - "^[A-Z0-9]+$"^^ . - "https://sorgerlab.github.io/famplex/$1"^^ . - . - . - "000000159"^^ . - . - . - "col.taiwan" . - "bsweeney@ebi.ac.uk" . - . - . - "Association-Rule-Based Annotator" . - "ontology" . - "http://unite.ut.ee/bl_forw.php?nimi="^^ . - "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information."^^ . - . - . - . - "^\\d{4,6}$"^^ . - "^\\d{7}$"^^ . - "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." . - "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl="^^ . - "0001410"^^ . - . - . - "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1"^^ . - . - "life science" . - . -_:Naea93ab07d90452c8a5dfa9ac16f0589 "helpdesk@cropontology-curationtool.org" . - . - "Guide to Pharmacology Target" . - "https://www.nextprot.org/db/entry/"^^ . - "gene expression" . - . - "NXP" . - . - "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century."^^ . - . - . - . - . - "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored."^^ . - . - . - "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . - . - "data management" . - . - . - "https://bioregistry.io/discoverx:"^^ . - "CAA71118.1"^^ . - . - . - "https://bioregistry.io/dragondb.locus:"^^ . - . - . - . - . - "Food Classification and Description System" . - . - "http://www.nematodes.org/nembase4/cluster.php?cluster=$1"^^ . - . - "Software ontology" . - . - . - "drug discovery" . - . - . - . - "Saccharomyces cerevisiae promoter database" . - . - . - "gene" . - . - "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1"^^ . - "The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels."^^ . - . - "peptideatlas" . - "false"^^ . - . - . - . - "FCB005"^^ . - "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format."^^ . - "false"^^ . - . - . - "http://www.hmdb.ca/metabolites/$1"^^ . - . - "IPP900099"^^ . - "bsg-000052"^^ . - "The Chemistry Dashboard is a part of a suite of databases and web applications developed by the US Environmental Protection Agency's Chemical Safety for Sustainability Research Program. These databases and apps support EPA's computational toxicology research efforts to develop innovative methods to change how chemicals are currently evaluated for potential health risks."^^ . - "dietary restriction" . - . - "false"^^ . - . - . - "kestrelo" . - . - . - "0000598"^^ . - . - . - "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession="^^ . - . - . - . - . - "protein" . - . - . - "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^ . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years."^^ . - "ctri" . - "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases."^^ . - "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "life science" . - "metagenomics" . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - . - . - . - "http://wodaklab.org/iRefWeb/interaction/show/"^^ . - . - . - . - . - . - "ontology" . - "Encyclopedia of Life" . - . - . - "https://tetrahymena.vet.cornell.edu/display.php?stockid="^^ . - . - . - "phenotype" . - . - . - "life science" . - "Stefan Kuhn" . - "918902"^^ . - . - . - . - "27223"^^ . - . - "true"^^ . - . - . - . - . - . - . - . - . - . - "https://www.eionet.europa.eu/gemet/en/concept/$1"^^ . - "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ="^^ . - "CHEBI" . - . - "false"^^ . - "ontology" . - . - "https://prosite.expasy.org/$1"^^ . - . - "INN_ID" . - . - "orthology assignment" . - . - . - "LNC" . - . - . - . - . - "^\\d+$"^^ . - . - . - "https://bartoc.org/en/node/"^^ . - . - . - . - "AA0001"^^ . - . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code="^^ . - "false"^^ . - . - . - . - . - . - . - . - "data management" . - . - . - "PXD000440"^^ . - . - "http://purl.obolibrary.org/obo/CVDO_"^^ . - "Close to 5K Categorizations for drugs, similar to ATCC."^^ . - . - "konigmatt@googlemail.com" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "ma" . - "FAIRsharing Organization" . - "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures."^^ . - . - . - . - "health_care_quality_assessment"^^ . - "784"^^ . - "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1"^^ . - "metascience" . - . - "true"^^ . - . - "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma."^^ . - . - . - "Jeff Beck" . - . - "^MI\\d{7}$"^^ . - . - "csv"^^ . - "Neuronal cell types"^^ . - "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1"^^ . - . - . - "KEGG_REACTION_CLASS" . - "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features."^^ . - "false"^^ . - "Flora Phenotype Ontology" . - "http://autism.mindspec.org/GeneDetail/$1"^^ . - "Tom Gillespie" . - . - . - "2008-005144-16"^^ . - . - . - "MU9_3181"^^ . - "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id=$1"^^ . - . - . - . - . - . - . - . - . - . - "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1"^^ . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_res_"^^ . - . - "http://arabidopsis.org/servlets/TairObject?accession=Gene:"^^ . - . - "cghdb" . - . - . - "false"^^ . - . - "PPR103739"^^ . - . - . - . - . - "BioNumbers" . - "http://purl.org/spar/doco/"^^ . - "ontology" . - . - . - "Google Patents" . - "LL379-9"^^ . - . - . - "abm" . - . - . - . - . + . + . + "genome" . . - "epigenetics" . - . - . - "http://virtualflybrain.org/reports/"^^ . - . - . - . - "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information."^^ . - . - "eggNOG" . - . - . - . - "NCBITaxonomyID" . - "SUM Breast Cancer Cell Line Knowledge Base" . - . - . - . - "pharmacodb.cell" . - "chemistry" . - . - "awalker@apa.org" . - . - . - . - "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#"^^ . - . - . - . - . - . - . - "^DDInter\\d+$"^^ . - "allergome" . - . - "http://purl.obolibrary.org/obo/IAO_$1"^^ . - "spectrometry" . - . - . - "TAIR Gene" . - "ato" . - . - . - . - "https://protists.ensembl.org/id/"^^ . - . - "dna" . - "false"^^ . - . - . - . - . - . - "https://www.ebi.ac.uk/pride/archive/projects/"^^ . - . - . - . - "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature."^^ . - "http://www.gramene.org/db/genes/search_gene?acc=$1"^^ . - "https://www.affymetrix.com/LinkServlet?probeset=$1"^^ . - "COG0001"^^ . - . - . - "BioTools" . - . - . - . - "FMAID" . - "NLXSUB" . - . - . - . - "87"^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - "2023-503698-40-00"^^ . - "false"^^ . - . - "github.pull" . - . - "0745-4570"^^ . - . - . - . - . - "false"^^ . - . - . - . - "true"^^ . - . - . - . - . - "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1"^^ . - . - . - . - . - . - "shibase" . - "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id="^^ . - . - . - "BioPortal Prefixes" . - "https://www.genedb.org/gene/"^^ . - "false"^^ . - "biomedical science" . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - "638309541"^^ . - . - "https://dbpedia.org/ontology/"^^ . - "Developing Human Brain Atlas" . - . - . - . - "plant breeding" . - . - . - . - . - . - "http://csbl.bmb.uga.edu/DOOR/operon.php?id="^^ . - . - "^PWY\\w{2}\\-\\d{3}$"^^ . - . - . - . - . - . - . - . - "https://models.physiomeproject.org/exposure/"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/PORO_"^^ . - . - . - "life science" . - . - "http://www.knapsackfamily.com/knapsack_core/information.php?word=$1"^^ . - . - . - . - . - . - "ontology" . - "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$1"^^ . - "European Genome-phenome Archive Dataset" . - "flowrepository" . - "igrhcellid" . - . - "ontology" . - "pride.project" . - . - . - "0000139"^^ . - . - "The International Traditional Medicine Clinical Trial Registry (ITMCTR) is a non-profit online register of clinical trials being conducted in the field of traditional medicine. It isoperated by the China Academy of Chinese Medical Sciences and The China Center For Evidence Based Traditional Chinese Medicine. It is recognized as a Primary Registry of WHO, and contributes data to the WHO ICTRP. (from website)"^^ . - "17254"^^ . - "https://aopwiki.org/events/"^^ . - . - "tgd" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/PW_$1"^^ . - "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name="^^ . - . - . - . - . - . - "sjwang@mcw.edu" . - . - . - "alternative splicing" . - "OBO Foundry" . - . - "Adriano Rutz" . - "computational neuroscience" . - "Ensembl Gene" . - . - . - . - "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors."^^ . - "GenBank" . - . - "^\\w+\\_\\d+(\\.\\d+)?$"^^ . - "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"^^ . - "false"^^ . - "^\\d+$"^^ . - "MagnitudeValueType"^^ . - "ontology" . - . - "false"^^ . - . - . - "sdap" . - . - "false"^^ . - . - "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1"^^ . - . - . - . - "protein" . - . - . - "chemspider" . - . - . - "An ontology for the description of Drosophila melanogaster phenotypes."^^ . - "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$"^^ . - "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"^^ . - . - . - . - . - "false"^^ . - "0000004"^^ . - "false"^^ . - "^\\d+$"^^ . - . - . - "social science" . - . - "Japan Collection of Microorganisms" . - . - "false"^^ . - . - . - "Daniel Gautheret" . - "ontology and terminology" . - . - . - . - "Philipp Bucher" . - "civic.vid" . - "fcsfree" . - . -_:Nb500c8d05f814fa9a666feba602bbf01 "First DataBank Customer Support" . - . - "GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray" . - . - "drosophila" . - . - . - . - "NIF Standard Ontology: OEN Terms in Neurolex" . - . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/"^^ . - . - . - . - . - . - . - . - "earth science" . - . - "0000001"^^ . - "knowledge and information systems" . - . - "ontology" . - . - "dna" . - "gpcrdb" . - "^\\d{7}$"^^ . - "https://www.drugbank.ca/categories/$1"^^ . - . - "Alex Bateman" . - . - . - . - . - "false"^^ . - "http://geneontology.org/docs/gene-product-information-gpi-format/#$1"^^ . - . - "Observation"^^ . - . - . - . - . - "provides for" . - . - "biomodels.kisao" . - . - . - . - "obo" . - . - . - . - "https://fungidb.org/fungidb/app/record/gene/"^^ . - . + "Open Biomedical Annotations" . + "Meng LIU" . + "101"^^ . + . + . + . + "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam="^^ . +_:N97fe579fac334c8ca90aeb591f335afa "Jim Amsden" . + . + "animal breeding" . + . + . + "ClinVar Variation" . + . + "https://www.ndexbio.org/viewer/networks/$1"^^ . + . + . + . + . + . + "NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction]."^^ . + "Symposium"^^ . + . + "PharmacoDB Cells" . + . + . + . + "false"^^ . + "cell lines" . + . + . + "Chris Grove" . + . + . + "NIF Standard Ontology: Molecules" . + . + "Mental Functioning Ontology" . + . + "http://modelseed.org/biochem/reactions/$1"^^ . + "^\\d{7}$"^^ . + . + "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-"^^ . + . + . + "265912"^^ . + "classification" . + . + . + "asfis" . + "http://tables.pseudogene.org/[?species_name]/"^^ . . - . - "false"^^ . - . - . - . - "ontology" . - . - . - "0000199"^^ . - . - . - . - "Signaling Network Open Resource" . - "obo" . - "protein" . - "277.9"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "beetlebase" . - . - . - . - . - . - . - . - "life science" . - . - . - . - "https://www.fishbase.ca/summary/$1"^^ . - "bioinformatics" . - "http://purl.obolibrary.org/obo/HsapDv_"^^ . - . - _:N60032d4dab624076aa02184b78b7efd2 . - . - . - "false"^^ . - . - . - . - "Schema for the export of the Bioregistry as RDF"^^ . - . - . - . - "http://www.proglycprot.org/detail.aspx?ProId="^^ . - . - . - . - . - "authoredBy"^^ . - . - . - . - . - "software engineering" . - . - . - . - . - . - "https://www.wwpdb.org/pdb?id="^^ . - . - . - . - . - . - . - "Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)"^^ . - "ontology" . - . - . - . - . - . - . - "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1"^^ . - . - . - "pig" . - . - . - "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id="^^ . - . - "^\\d{7}$"^^ . - . - . - "edda" . - . - . - "http://ctdbase.org/detail.go?type=chem&acc="^^ . - "https://w3id.org/linkml/$1"^^ . - . - . - . - "0778"^^ . - . - "false"^^ . - "caripark@iastate.edu" . - "http://purl.obolibrary.org/obo/MA_$1"^^ . - . - . - "est" . - . - "https://gold.jgi.doe.gov/resolver?id="^^ . - "rna" . - "mouse" . - . - . - "Animal Genome QTL" . - . - . - . - . - . - . - . - "https://www.vmh.life/#reaction/$1"^^ . - . - . - . - . - . - "false"^^ . - . - . - "eukaryotic" . - "neurobiology" . - . - "SNOMED" . - . - . - . - "5"^^ . - . - . - . - "The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data."^^ . - "Pocketome" . - "subject agnostic" . - . - . - "http://purl.obolibrary.org/obo/HSO_"^^ . - . - . - . - "^\\d{7}$"^^ . - "BioCatalogue Service" . - . - . - . - . - "2"^^ . - "tRNA Gene Database" . - "The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)"^^ . - . - "environmental science" . - "false"^^ . - "false"^^ . - . - . - "affy.probeset" . - . - "bridgedb" . - . - "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies."^^ . - "^\\d+$"^^ . - . - "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates."^^ . - "xml" . - . - . - . - . - . - "L000001"^^ . - "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."^^ . - . - . - "srao" . - "GenAtlas is a database containing information on human genes, markers and phenotypes."^^ . - "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"^^ . - "https://www.storedb.org/store_v3/study.jsp?studyId="^^ . - . - . - "chemical" . - . - "life science" . - . - "^\\d{7}$"^^ . - . - . - "^[A-Z0-9]+$"^^ . - . - "FAIRsharing" . - "cryopreservation" . - "true"^^ . - "structural biology" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information."^^ . - "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id="^^ . + . + "http://www.w3.org/ns/adms#$1"^^ . + "Clare Pilgrim" . + . + "dcat" . + . + . + _:N4cf661d3a80e4bc29af2d32f1413fc73 . + . + . . - . - . - "Vocabulary of Interlinked Datasets" . - "A formal ontology of phenotypes observed in fission yeast."^^ . - . - . - "SPCC13B11.01"^^ . - "hasOpenAccessRating"^^ . - . - . - "glycomics" . - . - "ESi007-A"^^ . - . - . - "appears in" . - "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant."^^ . - "Suzi Aleksander" . - "UM-BBD compound" . - . - . - "salamander" . - . - . - . - . - . - "http://erop.inbi.ras.ru/result2.php?PepName=$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - "CALM1"^^ . - "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid="^^ . - . - . - "https://www.ncbi.nlm.nih.gov/dbvar/variants/$1"^^ . - "G protein-coupled receptor database" . - "cell biology" . - "http://scop.berkeley.edu/sid=$1"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - "A0TMC"^^ . - . - . - . - "d.craik@imb.uq.edu.au" . - . - . - "International Classification of Diseases, 10th Revision, Procedure Coding System" . - . - "https://bioregistry.io/tokue:"^^ . - . - . - "pfam.clan" . - . - . - "https://bioregistry.io/abs:"^^ . - . - . - "https://omim.org/MIM:$1"^^ . - . - "^\\d+$"^^ . - "MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data."^^ . - "^\\d+$"^^ . - . - . - "true"^^ . - . - . - . - "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=$1"^^ . - . - "DragonDB DNA" . - "false"^^ . - "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee."^^ . - . - "pathway" . - . - . - "https://www.re3data.org/repository/$1"^^ . - . - . - "false"^^ . - . - . - . - . - . - "0002502"^^ . - . - . - . - "cath.domain" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - "A language for validating RDF graphs against a set of conditions"^^ . - "ontology" . - . - . -_:N4b6f177c38fa4e3db98464cdf5ad524a "custserv@nlm.nih.gov" . - . - . - "http://purl.obolibrary.org/obo/MFO_"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - "RGD" . - . - "https://smpdb.ca/view/"^^ . - "http://purl.obolibrary.org/obo/CLO_"^^ . - . - . - "false"^^ . - "https://www.ncbi.nlm.nih.gov/pubmed/$1"^^ . - . - . - . - . - . - . - . - "https://sorgerlab.github.io/famplex/"^^ . - . - . - "false"^^ . - "subject agnostic" . - . - . - "1"^^ . - . - "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species."^^ . - . - . + . + . + . + "genomics" . + . + . + "3D Metabolites" . + " Christos Louis" . + . + "Pier Luigi Buttigieg" . + "0000389"^^ . + "n2t" . + "^[a-z][a-zA-Z]+$"^^ . + "false"^^ . + . + . + . + . + "life science" . + . + . + . + . + . + . + . + "chemistry" . + . + "1537"^^ . + . + . + . + . + "http://database.deepsolar.space:18080/dbs/nlfff/$1"^^ . + "pgs" . + "biomedical science" . + . + . + "http://www.dpvweb.net/dpv/showdpv.php?dpvno="^^ . + "J55.713G"^^ . + "agricola" . + "The RNA Modification Database" . + "data integration" . + "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data."^^ . + "ontology" . + "wormpep" . + "epidemiology" . + "false"^^ . + "false"^^ . + . + "http://www.interfil.org/details.php?id=$1"^^ . + "variant" . + "https://portal.gdc.cancer.gov/cases/"^^ . + . + . + . + "00000000"^^ . + "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1"^^ . + "cjmungall@lbl.gov" . + . + . + "IUPHAR_GPCR" . + "046"^^ . + . + . + "AAC"^^ . + "^\\d+$"^^ . + . + . + . + "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)."^^ . + . + . + . + . + . + . + "ontology" . + . + . + . + . + . + . + . + "^bkc[0-9]*$"^^ . + "false"^^ . + . + . + _:N80b3ec35ee2f44e1bd79e2dfa8a15987 . + . + . + "This is the Agilent SurePrint G3 Human GE v2 8x60k Microarray, Agilent design ID 039494, GridName 039494_D_F_20120628. Probe layout is 1 x 1 x 384 rows x 164 cols, which is different from a similar ADF A-GEOD-16699 (1 x 1 x 328 rows x 192 cols). Version 2 of this array contains long intergenic non-coding RNA (lincRNA) probes designed to the human catalog of lincRNAs from the Broad Institute, along with an update of mRNA content when compared to version 1. Probes were designed using GRCh37 assembly of the human genome. Annotation of probes came from the following database: RefSeq Build 50, Ensembl Release 52, Unigene Build 216, GenBank (April 2009), Broad Institute Human lincRNA catalog (Nov 2011), Broad Institute TUCP transcripts catalog (Nov 2011). Probe annotation was taken from A-GEOD-16699."^^ . + "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "obo" . + "false"^^ . + . + "ChEBI Data Sources" . + "agriculture" . + . + . + . + . + . + . + . + "SAMEA2397676"^^ . + "diseaseclass" . + . + . + . + . + . + . + . + . + . + . + . + . + . + "181" . + . + "http://www.candidagenome.org/cgi-bin/locus.pl?dbid="^^ . + "Biological Magnetic Resonance Data Bank" . + . + . + "genome" . + . + "drugbankv4.target" . + . + "288"^^ . + . + "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . + "P00024"^^ . + . + "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps."^^ . + . + . + "false"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ERO_$1"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata."^^ . + "Cellular Microscopy Phenotype Ontology" . + . + "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + "Human Intermediate Filament Database" . + . + . + . + . + . + "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1"^^ . + . . - . - . - . - . - "^\\d+$"^^ . - . - "kegg.pathway" . - . - . - . - . - . - "^\\d{7}$"^^ . - . - "biology" . - . - "ontology" . - . - . - "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. "^^ . - . - . - "Progenetix" . - "obo" . - . - . - . -_:Nb2f2dacd286c4088869c5474d4d79310 "Maria Herrero" . - "biopragmatics/bioregistry/416"^^ . - . - "hprd" . - . - "merops.family" . - . - . - . - . - . - . - "http://edamontology.org/topic_$1"^^ . - "mmmp.biomaps" . - "https://cropontology.org/rdf/CO_365:$1"^^ . - . - . - . - . - "25011"^^ . - . - . - . - "^\\d+$"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/homologene/"^^ . - . - . - . - "NCBITaxon" . - . - "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$"^^ . - . - . - . - . - . - . - . - "Open Citation Identifier" . - . - . - . - . - . - "cellopub" . - "MLCommons Association artifacts, including benchmark results, datasets, and saved models."^^ . - "A terminology for the skills necessary to make data FAIR and to keep it FAIR."^^ . - . - . - "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1"^^ . - "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . - . - "^\\d{7}$"^^ . - . - "https://prefix.cc/$1" . - . - . - . - . - . - . - . - . - . - . - "NLXFUNC" . - . - . - . - . - "small molecule" . - . - . - "BioPortal" . - "https://www.brenda-enzymes.org/php/result_flat.php4?ecno="^^ . - "^[0-9\\-_]+$"^^ . - "life science" . - . - "^\\d{8}$"^^ . - "^SL-\\d+$"^^ . - . - . - . - . - . - . - . - . - . - . - "structure" . - . - "^\\d{7}$"^^ . - "Sandra Orchard" . - . - . - . - . - . - "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#"^^ . - "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . - "ICD9CM_2005" . - . - "unite" . - . - . - . - "https://w3id.org/BCI-ontology#$1"^^ . - "biochemistry" . - . - "Diseases Database" . - . - . - "https://www.imanislife.com/?s="^^ . - . - . - "^M\\d{5}$"^^ . - "https://www.ebi.ac.uk/biosamples/sample/"^^ . - "gene" . - "54"^^ . - . - "Catalogue of Life" . - "co_337" . - "http://purl.obolibrary.org/obo/VO_$1"^^ . - . - . - "https://github.com/semanticchemistry/semanticchemistry" . - "false"^^ . - . - . - "d.a59037e8"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "http://sugarbind.expasy.org/$1"^^ . - . - "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."^^ . - . - . - "pav" . - "erik.vannimwegen@unibas.ch" . - . - . - "false"^^ . - "SwissLipid" . - . - . - . - . - "International Traditional Medicine Clinical Trial Registry" . - . - . - "ChEMBL" . - . - . - . - . - . - . - "http://www.whocc.no/atcvet/atcvet_index/?code=$1"^^ . - . - . - "https://www.uniprot.org/locations/$1"^^ . - . - . - . - . - "nlx.cell" . - . - . - "rcb" . - . - . - . - "Selventa legacy complex namespace used with the Biological Expression Language"^^ . - "gcst" . - . - "euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information."^^ . - "splash10-0zq2000000-77302b0326a418630a84"^^ . - . - . - . - "false"^^ . - . - "metadata" . - . - . - "orphanet.ordo" . - . - . - . - . - . - . - . - . - . - . - "SIDM01262"^^ . - . - . - "biology" . - . - "http://purl.obolibrary.org/obo/FYPO_$1"^^ . - . - . - "false"^^ . - . - . - . - . - . - "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"^^ . - "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . - . - . - . - . - . - "ncbi.resource" . - "FlyBrain Neuron Database" . - "ortholog" . - "YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes."^^ . - "ontology" . - . - "https://hdl.handle.net/hdl:20.500.12633/$1"^^ . - . - . - . - . - . - . - . - "jupp@ebi.ac.uk" . - "lincs.data" . - . - . - . - . - "cogs@ncbi.nlm.nih.gov" . - . - "Sabrina Toro" . - . - "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration."^^ . - . - "MetaNetX reaction" . - "^\\d+$"^^ . - . - "obo" . - . - . - "dna" . - "functional genomics" . - . - . - "Sabrina@tislab.org" . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - "^TC\\d+$"^^ . - "tokue" . - . - "immunology" . - . - "The Bibliographic Ontology" . - . - . - . - . - . - . - "bcp47" . - . - . - "nucleardb" . - "phrr" . - . - "S-EPMC6266652"^^ . - "^CH_\\d+$"^^ . - . - . - "http://purl.obolibrary.org/obo/CLYH_"^^ . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - "NCBI Probe database Public registry of nucleic acid reagents" . - . - "c0000005"^^ . - . - . - . - "http://purl.obolibrary.org/obo/PdumDv_$1"^^ . - . - . - . - "https://europepmc.org/article/CBA/"^^ . - "UPa" . - . - "000009"^^ . - "genomics" . - . - . - . - "^\\d+$"^^ . - . - "http://psb.kobic.re.kr/STAP/refinement1/result.php?search="^^ . - "https://jrct.niph.go.jp/en-latest-detail/"^^ . - . - . - . - . - . - . - "institution" . - . - . - . - . - . - "pathway" . - . - "https://www.ebi.ac.uk/biomodels/"^^ . - . - . - . - . - . - . - . - . - "genome" . - . - . - . - "steven.marsh@ucl.ac.uk" . - . - . - . - . - . - . - "408"^^ . - "subject agnostic" . - . - "https://ligandbook.org/package/$1"^^ . - . - . - "Steven G. E. Marsh" . - "false"^^ . - "http://stormo.wustl.edu/ScerTF/details/"^^ . - "false"^^ . - . - "ontology" . - "structure" . - . - . - "hba" . - . - . - "Heidi L. Rehm" . - "obo" . - "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . - "Bacillus subtilis genome sequencing project" . - . - "virgen" . - . - "http://purl.org/spar/scoro/"^^ . - . - "genecards.genenote" . - . - "nutritional science" . - "DIDs are an effort by the W3C Credentials Community Group and the wider Internet identity community to define identifiers that can be registered, updated, resolved, and revoked without any dependency on a central authority or intermediary."^^ . - _:N8d54b1a6872b486aa13afa60bc27dd39 . - . - . - "http://purl.obolibrary.org/obo/IPR_$1"^^ . - . - "Ensembl Glossary" . - "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]."^^ . - "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf"^^ . - . - "00000008"^^ . - "proteomics" . - . - . - . - . - . - "https://www.uniprot.org/keywords/"^^ . - "genomics" . - . - "subject agnostic" . - "stem cell" . - "life science" . - . - . - "genome" . - . - . - . - . - "UniPathway Compound" . - . - . - "https://progenetix.org/services/ids/"^^ . - . - . - "debio" . - . - . - "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id="^^ . - "false"^^ . - . - "https://civicdb.org/links/drugs/$1"^^ . - . - "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp="^^ . - . - . - . - . - "The COVID-19 Infectious Disease Ontology" . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - "Lebanon Clinical Trials Registry" . - "Troy Pells" . - . - . - . - . - "proteomics" . - "https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1"^^ . - . - "Human Proteome Map" . - "14"^^ . - "functional genomics" . - . - . - . - . - . - "ligandbook" . - "https://bioregistry.io" . - . - . - "Selventa legacy protein family namespace used with the Biological Expression Language"^^ . - . - "lindsey.anderson@pnnl.gov" . - . - "false"^^ . - "^[A-Z0-9]+$"^^ . - . - "YMDB00001"^^ . + . + . + . + "SNOMEDCT_US_2021_03_01" . + . + . + . + "epidemiology" . + . + "come" . + "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId="^^ . + . + . + "tritrypdb" . + . + "biomedical science" . + "^\\d{7}$"^^ . + "https://biopragmatics.github.io/providers/cemo/$1"^^ . + . + . + . + "ruili.huang@nih.gov" . + "https://omia.org/OMIA$1"^^ . + . + . + . + . + . + . + . + . + _:Nd11f509979d24a498e9719a49b64bac0 . + "Leen Vandepitte" . + . + "Classification of Transcription Factors in Mammalia" . + . + . + . + . + "phenolexplorer" . + . + . + "ensembl.protist" . + . + . + . + "https://amoebadb.org/amoeba/app/record/gene/"^^ . + . + . + . + . + "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1"^^ . + . + "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest."^^ . + . + . + . . - . - . - . - . - . - . - . - . - "drosophilidae" . - . - "hepro" . - "http://purl.obolibrary.org/obo/MmusDv_"^^ . - . - "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id="^^ . - . - "data set" . - . - . - . - . - . - . - . - . - "geonames" . - "gene expression" . - "false"^^ . - . - . - . - "0000485"^^ . - . - . - . - . - "Animal Genome Cattle QTL" . - . - "https://www.vmh.life/#reaction/"^^ . - . - . - "false"^^ . - . - "Cell Line Ontology [derivative]" . - . - . - . - "karel.berka@upol.cz" . - . - . - . - "false"^^ . - "blast" . - . - . - "false"^^ . + "subject agnostic" . + . + . + "977869"^^ . + . + . + "protocol" . + . + . + . + "chenyangnutrition@gmail.com" . + . + . + "Troy Pells" . + . + . + . + . + . + . + . + "^(HOM)?\\d{7}$"^^ . + . + . + . + . + . + . "LIPID MAPS" . - . - . - . - "OMIT" . - "Genomic Data Commons Data Portal" . - . - "fyler" . - . - "multicellds.snapshot" . - "http://purl.obolibrary.org/obo/FBbt_"^^ . - . - "E12768"^^ . - . - "International Nucleotide Sequence Database Collaboration (INSDC) Run" . - "^[\\d.]+$"^^ . - "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"^^ . - "cheminformatics" . - . - "^\\d+$"^^ . - . - "0000015"^^ . - . - . - "false"^^ . - . - . - . - . - . - "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."^^ . - . - "metaregistry" . - . - "false"^^ . - . - . - "app-d678n-tottori"^^ . - . - "0000069"^^ . - . - . - . - . - . - "ontology" . - . - . - . - . - . - "Jennifer Smith" . - "1000000"^^ . - "false"^^ . - . - . - "aop.events" . - . - "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."^^ . - . - . - . - "botany" . - _:N274e55f6ea7440dfba8452e0d6b6d9dd . - . - . - . - . - . - . - "0000000"^^ . - . - "4623"^^ . - "Product number for the European Medicines Agency"^^ . - "life science" . - "http://fossilworks.org/?a=referenceInfo&reference_no=$1"^^ . - . - "^\\d{8}$"^^ . - . - . - "http://purl.obolibrary.org/obo/BSPO_$1"^^ . - . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/ERO_"^^ . - . - "molecular neuroscience" . - "NBK331"^^ . - . - "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$"^^ . - . - "oci" . - . - "^RID\\d+$"^^ . - . - "https://bioregistry.io/collection/"^^ . - "biomedical science" . - "life science" . - . - . - . - "ZFA_RETIRED" . - . - "Human developmental anatomy, abstract" . - . - . - . - . - . - . - "Mouse adult gross anatomy" . - "life sciences" . - "Peruvian Clinical Trial Registry" . - "Hymenoptera Anatomy Ontology" . - . - "KEGG" . - "The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format."^^ . - . - . - . - . - . - "life science" . - "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur."^^ . - . - . - . - . - "0007114"^^ . - . - . - "foaf" . - . - . - "wos" . - . - . - . - . - . - . - . - "false"^^ . - "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1"^^ . - . - "HOSAPI0399"^^ . - . - "Activity Streams is an open format specification for activity stream protocols, which are used to syndicate activities taken in social web applications and services, similar to those in Facebook's, Instagram's, and Twitter's. The standard provides a general way to represent activities."^^ . - . - . - . - "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . - "MINID Test" . - "UMLS Semantic Types Ontology" . - "PubMed Central" . - . - . - . - "true"^^ . - . - "http://purl.obolibrary.org/obo/VT_"^^ . - . - . - "^UDB\\d{6}$"^^ . - "^[a-z0-9-]+$"^^ . - . - "unigene" . - . - "Prefixes useful in annotating documentation provenance." . - . - . - "false"^^ . - "Neuro Behavior Ontology" . - . - . - . - "false"^^ . - . - . - "http://www.ontologyrepository.com/CommonCoreOntologies/$1"^^ . - "pathway" . - "animal husbandry" . - "https://www.ncbi.nlm.nih.gov/dbvar/variants/"^^ . - . - "anatomy" . - "false"^^ . - . - . - "false"^^ . - "FlyBase" . - "^\\d+$"^^ . - . - "Person" . - . - . - . - . - "https://www.cbioportal.org/study/summary?id=$1"^^ . - . - "cooperl@oregonstate.edu" . - "false"^^ . - . - . - . - . - . - "https://biopragmatics.github.io/providers/hog/"^^ . - . - . - . - . - . - "frapo" . - . - . - "T039"^^ . - . - "http://www.w3.org/ns/shacl#$1"^^ . - . - . - "rna" . - . - . - . - . - . - . - . - . - "false"^^ . - "anatomy" . - . - "false"^^ . - . - "life science" . - . - "life science" . - . - "false"^^ . - . - "jax" . - "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1"^^ . - . - . - . - "ontology" . - . - "seed" . - . - . - . - . - . - "false"^^ . - . - "hinv.transcript" . - . - "cho"^^ . - . - "arxiv" . - . - "false"^^ . - . - _:Nb2f2dacd286c4088869c5474d4d79310 . - "https://www.animalgenome.org/CorrDB/q/?id=CorrID:"^^ . - "noaa" . - "NRFC051"^^ . - . - . - . - . - "International Histocompatibility Workshop cell lines" . - "obo" . - . - "eccode" . - "Terminology for Description of Dynamics" . - "https://pharmacodb.ca/tissues/"^^ . - "false"^^ . - "Scholia Registry" . - "false"^^ . - . - . - "ontology" . - . - "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid="^^ . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - "mex" . - . - "anatomy" . - "https://www.probes-drugs.org/compound/"^^ . - . - "http://www.oid-info.com/get/2.16.840.1.113883.6" . - "CONSO00010"^^ . - . - "ogi" . - . - . - "The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary."^^ . - . - . - . - . - . - "http://gmd.mpimp-golm.mpg.de/Spectrums/"^^ . - . - . - . - "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."^^ . - . - "chemistry" . - "oryzabase.stage" . - "DBMET02292"^^ . - "ontology" . - "sasap" . - . - . - . - . - . - . - _:N7ba3234bbb0040258a3439900b0e2440 . - . - . - "metabolomics" . - . - . - "Ontology for General Medical Science" . - . - "http://purl.obolibrary.org/obo/GAZ_$1"^^ . - . + . + . + . + . + "http://purl.obolibrary.org/obo/LBO_$1"^^ . + . + . + "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1"^^ . + . + "C0017565"^^ . + . + "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1"^^ . + . + . + "http://purl.obolibrary.org/obo/RoleO_$1"^^ . + "obo" . + . + . + "nextprot" . + . + "rnao" . + "Ekaterina Chuprikova" . + "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1"^^ . + . + . + "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=$1"^^ . + . + "4195"^^ . + . + . + . + . + . + . + . + "pfam.clan" . + "false"^^ . + "Francesco Vitali" . + . . - "omim.ps" . - . - "E-cyanobacterium entity" . - . - . - . - . - "false"^^ . - "0000590"^^ . - "DI-04240"^^ . - . - . - . - . - "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded"^^ . - "co_336" . - "hesa" . - . - . - . - . - "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession="^^ . - "http://purl.obolibrary.org/obo/XAO_"^^ . - . - "tctr" . - . - "glycosciences.db" . - "6VDC956"^^ . - . - "ATTC" . - . - . - "idocovid19" . - "bbkg" . - . - . - "transgenic" . - . - . - "false"^^ . - "2.7.1.1"^^ . - "pmid" . - . - . - "virus" . - "structural biology" . - . - . - . - . - . - . - "microbiology" . - "4201PAT-CCTCC00348"^^ . - . - "PDB Structure" . - . - . - . - "https://www.worldwildlife.org/ecoregions/"^^ . - . - "elisa-kits" . - . - "molecules" . - . - "http://purl.obolibrary.org/obo/UPHENO_$1"^^ . - "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject"^^ . - . - "030719"^^ . - . - . - . - "nathan.baker@pnnl.gov" . - . - "life science" . - "ontology" . - . - . - "signor.relation" . - . - "^\\w+$"^^ . - . - . - . - "protein" . - "https://commonchemistry.cas.org/detail?cas_rn=$1"^^ . - . - . - . - . - . - . - "Ontology for vector surveillance and management" . - . - . - "false"^^ . - . - . - . - "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . - . - . - . - "genome" . - . - "false"^^ . - . - "2afacf00-9a1d-4d80-8c32-69d3923d3913"^^ . - . - . - . - . - . - . - . - . - . - . - "Willy Wong" . - . - "The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species."^^ . - "life science" . - . - "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography."^^ . - "dailymed" . - . - . - . - "Neuroscience Multi-Omic BRAIN Initiative Data" . - "https://www.ebi.ac.uk/interpro/genomeproperties/#"^^ . - "Contains entries for various database identifiers" . - . - "molecular" . - . - "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. "^^ . - "The Dietary Restriction Gene Database" . - "National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]"^^ . - . - "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1"^^ . - . - . - . - . - . - . - "obo" . - "https://www.ncbi.nlm.nih.gov/sra/"^^ . - "classification" . - . - "insdc" . - . - . - . - "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$"^^ . - "ISO Object Identifier" . - "structure" . - . -_:Ndfe615d02a6241f0848428d135ebbbd9 "Rafael Gonçalves" . - "^[0-9]{1,7}$"^^ . - . - "false"^^ . - "http://pombe.oridb.org/details.php?id="^^ . - . - "http://lincsportal.ccs.miami.edu/datasets/#/view/"^^ . - . - "Metabolomics Workbench Project" . - . - . - "^ACTRN\\d+$"^^ . - . - "This meta-ontology is self-describing. OBO metamodel properties are described using OBO metamodel properties"^^ . - . - "life science" . - . - "phosphosite.sitegroup" . - . - . - "protein" . - . - _:Nd9a3ed545fc949169d71f3ee1eee9f9e . - "biomedical science" . - . - . - . - . - . - . - . - "SNOMED_CT" . - "botany" . - . - . - "https://www.cameo3d.org/sp/targets/target/"^^ . - . - . - . - . - "https://fairsharing.org/organisations/$1"^^ . - . - . - "emdb" . - "dragondb.allele" . - . - "KEGG.EDRUG" . - . - . - "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]"^^ . - . - "adrienrougny@gmail.com" . - . - . - "knowledge and information systems" . - . - "life science" . - . - "FBdv" . - . - "VirOligo" . - "David Linke" . - . - "Common Terminology Criteria for Adverse Events" . - "GR_QTL" . - . - "https://www.gwascentral.org/phenotype/$1"^^ . - "life science" . - "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . - . - . - . - "https://units-of-measurement.org/$1"^^ . - . - . - "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id="^^ . - "http://purl.obolibrary.org/obo/ATO_$1"^^ . - "https://www.webelements.com/$1"^^ . - . - . - . - . - . - "vuid" . - . - . - "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."^^ . - "false"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "https://biopragmatics.github.io/providers/dhba/"^^ . - . - . - "https://www.uniprot.org/diseases/"^^ . - . - "metabolite" . - "BCRC Strain Collection Catalog" . - . - "genetics" . - . - "^\\d{7}$"^^ . - . - . - "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.)."^^ . - . - . - "http://www.wikidata.org/entity/"^^ . - . - . - "false"^^ . - . - . - . - "https://cropontology.org/rdf/CO_335:"^^ . - . - . - "Lycalopex_vetulus"^^ . - . - "ontology" . - . - "maxneal@gmail.com" . - . - "http://purl.obolibrary.org/obo/LBO_"^^ . - . - . - "ontology" . - . - "^\\d+$"^^ . - . - . - "mycobank" . - "Cell line collections (Providers)"^^ . - . - . - "http://www.wikipathways.org/instance/"^^ . - "^NONHSAG\\d{5}$"^^ . - . - . - "https://biopragmatics.github.io/providers/peff/"^^ . - . - . -_:Nd77a505b50a148869c0fc766eb978e4c "Edd Wilder-James" . - "mutant mouse strain" . - . - . - "aellenhicks@gmail.com" . - "0000001"^^ . - "void" . - . - . - . - "biopragmatics/bioregistry/424"^^ . - . - . - . - . - "https://aopwiki.org/stressors/$1"^^ . - . - "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1"^^ . - . - "omics" . - "dna" . - "https://envipath.org/package/$1"^^ . - . - "Laurent Duret" . - . - . - . - . - . - . - "biopragmatics/bioregistry"^^ . - "^\\d{4,}((_[asx])?_at)$"^^ . - . - "rna" . - . - . - "true"^^ . - . - "classification" . - . - . - "https://www.ebi.ac.uk/chembl/entity/"^^ . - . - . - "life science" . - "Enrique Blanco" . - "https://www.genedb.org/gene/$1"^^ . - "insdc.gcf" . - . - . - . - "Rat Genome Database" . - "Sabine Oesterle" . - . - . - "^\\d+$"^^ . - "ECU03_0820i"^^ . - "subject agnostic" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "^P\\d+$"^^ . - . - . - . - . - . - . - "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1"^^ . - . - . - . - . - . - "false"^^ . - . - . - "developmental biology" . - "760050"^^ . - . - "http://purl.obolibrary.org/obo/NGBO_$1"^^ . - . - "RXN-14904"^^ . - . - . - "batchelorc@rsc.org" . - "000017"^^ . - "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."^^ . - . - . - "Josh Moore" . - . - . - "repeatsdb.protein" . - . - "MaizeGDB Locus" . - . - . - . - "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId="^^ . - . - . - . - . - "William Hogan" . - . - "KEGG_RCLASS" . - . - "false"^^ . - "14362"^^ . - "0010034"^^ . - . - "http://www.proteinmodelportal.org/query/uniprot/$1"^^ . - . - . - . - . - "asap" . - "https://www.e-cyanobacterium.org/bcs/entity/$1"^^ . - . - "http://clipserve.clip.ubc.ca/topfind/proteins/$1"^^ . - "RIKEN Bioresource Center Cell Bank" . - . - "protein" . - . - . - "130502"^^ . - . - . - . - "life science" . - "^\\d{7}$"^^ . - . - . - . - "linguistics" . - . - . - . - . - . - . - . + "Cancer Cell Line Encyclopedia Cells" . + . + . + . + "false"^^ . + . + "ontology" . + . + "galen" . "ecyano.rule" . - . - . - "https://www.arraymap.org/pgx:$1"^^ . - . - "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information."^^ . - "DDB0191090"^^ . - . - . - . - . - "protein" . - . - . - . - . - "^[a-zA-Z0-9\\-:#\\.]+$"^^ . - . - "^\\d{7}$"^^ . - . - . - . -_:N3fa0685659fd4de4814b1950f8c1dede "Onard Mejino" . - "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$"^^ . - . - . - "false"^^ . - "chemical" . - . - . - . - . - "^[A-Za-z 0-9]+$"^^ . - . - . - "Ontology of Zebrafish Experimental Conditions"^^ . - . - . - "ChiCTR2300070727"^^ . - . - "clinicaltrial" . - . - . - . - . - "^\\d{7}$"^^ . - . - "bt0001"^^ . - "omit" . - . - "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements."^^ . - "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . - "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$"^^ . - . - . - . - . - "^\\w+$"^^ . - "obo" . - . - "01027931310-01022252312"^^ . - . - . - . - . - . - . - . - "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments."^^ . - "http://purl.obolibrary.org/obo/RNAO_$1"^^ . - . - . - "cell lines" . -_:Nf7642f249190476898c7f16d563ba940 "Ian Davis" . - . - . - . - . - . - . - . - "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line="^^ . - . - . - . - . - "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1"^^ . - . - . - "http://exac.broadinstitute.org/variant/"^^ . - . - . - . -_:N4ddba5cc6d3848468da76008f7a33671 "AGROVOC Team" . - . - . - . - . - . - . - "MassBank" . - . - "false"^^ . - . - . - "Antibody Registry" . - . - "http://purl.obolibrary.org/obo/DISDRIV_$1"^^ . - . - "gene" . - . - . - . - . - "discoverx" . - . - . - . - . - . - . - . - . - . - "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1"^^ . - "salmon" . - "^ACYPI\\d{6}(-RA)?$"^^ . - . - . - "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO."^^ . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "REPRODUCE-ME Ontology" . - . - "veNOG12876"^^ . - "https://bioregistry.io/nbn:"^^ . - "glycomics" . - . - "false"^^ . - . - . - . - . - . - . - "http://lisanwanglab.org/DASHR/entry/"^^ . - . - . - "gro-cpga" . - "90806"^^ . - . - "true"^^ . - . - . - . - . - . - . - "ricenetdb.protein" . - "SP_KW" . - . - "obo" . - "pathway" . - "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id="^^ . - "http://foodb.ca/compounds/"^^ . - . - . - "neuroscience" . - "http://www.sasbdb.org/data/$1"^^ . - . - . - . - . - "AgentIdentifierScheme"^^ . - . - . - . - "false"^^ . - . - . - . - . - . - "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references."^^ . - . - . - "https://hpscreg.eu/cell-line/"^^ . - . - "2004-2820"^^ . - "sequence" . - . - "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes."^^ . - "https://cropontology.org/rdf/CO_356:$1"^^ . - "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world."^^ . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - "http://biobanknetwork.telethon.it/Sample/View?sampleId="^^ . - . - . - "anzctr" . - . - "neurophysiology" . - . - . - "false"^^ . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/DUO_"^^ . - . - . - . - "https://cellmodelpassports.sanger.ac.uk/passports/$1"^^ . - "0000000"^^ . - . - "evm" . - . - . - . - "2.1.1"^^ . - . - "obo" . - . - . - . - "^\\d{7}$"^^ . - . - . - "keilbeck@genetics.utah.edu" . - . - . - . - . - . - . - "https://comptox.epa.gov/dashboard/"^^ . - . - "hsa00190"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - "NIF Standard Ontology: External" . - . - . - . - . - . - "^\\d+$"^^ . - . + . + "agriculture" . + . + . + "disease model" . + "^[A-Z_]{3}[0-9]{4,}$"^^ . + . + . + . + . + . + . + . + "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$"^^ . + . + "ontology" . . - . - . - . - . - "biology" . - "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."^^ . - "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1"^^ . - . - . - . - . - "genome" . - . - . - . - "caloha" . - . - . - "^\\d+$"^^ . - "http://www.w3.org/2001/XMLSchema#$1"^^ . - "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0="^^ . - . - . - . - . - . - "2A"^^ . - . - "^\\d+$"^^ . - . - . - "false"^^ . - "false"^^ . - "disprot" . - "false"^^ . - . - "data integration" . - . - "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1"^^ . - . - . - "https://www.biozol.de/en/product/"^^ . - . - . - . - "animal genetics" . - . - . - . - "http://mods.rna.albany.edu/mods/modifications/view/$1"^^ . - "true"^^ . - . - "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion."^^ . - . - . - . - . - . - "https://www.facebase.org/data/record/#1/isa:dataset/accession="^^ . - . - . - . - . - . - . - "life sciences" . - . - "http://purl.obolibrary.org/obo/IPR_"^^ . - . - . - . - . - "Web Elements" . - . - "http://www.nematodes.org/nembase4/cluster.php?cluster="^^ . - . - "LINCS_LDP" . - . - "cteno" . - . - "http://purl.obolibrary.org/obo/MMO_"^^ . - "life science" . - "https://data.bloodpac.org/ga4gh/drs/v1/objects/"^^ . - "https://cropontology.org/rdf/CO_341:$1"^^ . - . - "iRefWeb" . - . - . - "https://www.ebi.ac.uk/pride/archive/projects/$1"^^ . - "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it."^^ . - "http://purl.obolibrary.org/obo/OPL_"^^ . - "A structured controlled vocabulary for the phenotypes of Ascomycete fungi."^^ . - "mutations" . - . - "chebi" . - "https://glygen.org/glycan/$1"^^ . - "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)"^^ . - "false"^^ . - . - . - . - . - . - . - "statistics" . - . - "metagenomics" . - . - . - . - . - . - "drugbank" . - "0002005"^^ . - . - "315.1"^^ . - "0000001"^^ . - "0000639"^^ . - . - . - . - "Human Pluripotent Stem Cell Registry" . - . - . - . - . - "FlyBase is the database of the Drosophila Genome Projects and of associated literature."^^ . - "https://www.ebi.ac.uk/interpro/entry/pfam/$1"^^ . - . - "topics" . - "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$"^^ . - . - . - "A frontend to Wikidata"^^ . - . - . - "Jade Hotchkiss" . - "cls" . - "om" . - . - . - . - . - . + . + . + "Scholarly Contributions and Roles Ontology" . + "Tb927.8.620"^^ . + . + . + . + . + . + . + "1"^^ . + "http://purl.obolibrary.org/obo/GECKO_$1"^^ . +_:N6f401262a7d84d76b6c84f6fcb7f2f2f "Albert Goldfain" . + "structure" . + "GO Relations" . + . + "obo" . + "EchoBASE post-genomic database for Escherichia coli" . + . + "botany" . + "http://purl.obolibrary.org/obo/HOM_$1"^^ . + "InChIKey" . + . + "genetics" . + . + . + . + "ZINC is not Commercial" . + "life science" . + . + . + "https://mips.helmholtz-muenchen.de/corum/?id="^^ . + . + "anatomy" . + . + . + "false"^^ . + "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1"^^ . + . + . + "http://degradome.uniovi.es/cgi-bin/protease/$1"^^ . + . + "https://bioregistry.io/metaregistry/prefixcommons/"^^ . + . + . + . + "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets."^^ . + "SchemaDefinition"^^ . + . + . + . + "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt."^^ . + "A0TMC"^^ . + . + "ontology" . + "classification" . + . + "mgiglio@som.umaryland.edu" . + . + . + . + "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate."^^ . +_:Nbf9b965aeb1945c0929cabc018829bf8 "datex@efsa.europa.eu" . + . + "0002927"^^ . + . + "false"^^ . + "genomics" . + . + "structure" . + . + . + . + _:N748c45da2ac44701ab1793f47c9389da . + . + . + "caro" . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + "Database for Prokaryotic Operons" . + . + . + . + . + "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/"^^ . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "ICD9CM_2005" . + . + "Semantic Mapping Vocabulary" . + "^[\\d.]+$"^^ . + "sisu" . + "mwitt@purdue.edu" . + . + . + . + "44259"^^ . + . + "fbtc" . + . + . + "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1"^^ . + . + "http://purl.org/gc/$1"^^ . + . + "FlyBase" . + . + "UMLS" . + "uniprot.keyword" . + "vmhgene" . + "dolce" . + "pathway" . + . + . + . + "The Amphioxus Development and Anatomy Ontology" . + . + . + . + "ontology" . + . + . + "biologics" . + . + "BiGG Reaction" . + . + . + "^\\d{7}$"^^ . + "000000012281955X"^^ . + "medicine" . + "true"^^ . + . + . + . + . + . +_:N7c8596a0bbc447a698650bd50784b249 "psidev-gps-dev@lists.sourceforge.net" . + . + "database" . + "emmo" . + . + . + "The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research)."^^ . + . + . + "^AT[1-5]G\\d{5}(\\.\\d+)?$"^^ . + "obo" . + . + . +_:N94ef09fe5186469496b5929a73d32bf9 "Crop Ontology Helpdesk" . +_:N609943db95f64f818021f2747975301e "curator@inoh.org" . + "A registry of commonly used prefixes in the life sciences and linked data. The source data for this registry is a spreadsheet on Google called the Life Science Registry. This registry was previously known as Prefix Commons and was available at https://prefixcommons.org." . + "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=$1"^^ . + . + . + "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl="^^ . + . + . + . + . + . + . + . + "688"^^ . + . + . + _:N28837f905bbe4f449cd65892310641e6 . + "Erik Segerdell" . + "ontology" . + "protein" . + . + . + . + . + . + "Marilyn Safran" . + . + . + "ontology" . + . + "A database of GlycoMaps containing 2585 conformational maps."^^ . + . + . "The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project."^^ . - "ftt" . - . - . - . - . - . - . - . - . - "jgraybeal@stanford.edu" . - . - . - "zhu@iastate.edu" . - . - "false"^^ . - . - . - "^YMDB\\d+$"^^ . - "http://purl.obolibrary.org/obo/MP_"^^ . - "^\\d+$"^^ . - "vendor" . - . - "Brian Aevermann" . - . - "obo" . - . - . - . - . - . - . - "hgnc.genefamily" . - . - "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available."^^ . - . - . - . - . - . - "life science" . - . - . - "9008500"^^ . - . - . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - "^\\d+$"^^ . - . - "RNA Virus Database" . - "s_mart_db" . - . - . - . - . - . - . - "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."^^ . - . - . - . - "false"^^ . - . - "4dn.biosource" . - "fyeco" . - "InChI" . - . - . - "false"^^ . - "genome" . - . - . - . - . - . - . - "biology" . - "infectious disease medicine" . - "Xenbase" . - "http://gmd.mpimp-golm.mpg.de/Analytes/$1"^^ . - "has URI prefix" . - "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources."^^ . - . - . - "ClinicalTrials.gov" . - . - "environmental science" . - . - . - . - . - . - . - "http://multicellds.org/MultiCellDB/"^^ . - . - . - "voss@gbv.de" . - "false"^^ . - . - . - . - . - . - . - . - . - . - "joerg.overmann@dsmz.de" . - "rdf" . - . - . - . - "false"^^ . - . - . - "^PTHR\\d{5}(\\:SF\\d{1,3})?$"^^ . - . - . - . - . - . - . - . - . - "Illumina Probe Identifier" . - . - . - "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1"^^ . - . - . - . - "https://protists.ensembl.org/id/$1"^^ . - "http://lipidbank.jp/cgi-bin/detail.cgi?id="^^ . - . - . - . - . - . - . - "Microbial Conditions Ontology" . - . - . - "bioportal" . - "ecyano.entity" . - . - "molecular physical chemistry" . - . - . - "0400109"^^ . - "false"^^ . - "DEF"^^ . - . - . - . - . - . - "Livestock Breed Ontology" . - . - . - . - "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "life science" . - . - . - . - "proteins" . - "protein"^^ . - "LOC_Os01g49190"^^ . - . - . - . - . - . - "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . - . - "giardiadb" . - . - "false"^^ . - "ontology" . - . - . - . - "metacyc.compound" . - "JGI Phytozome" . - "http://purl.obolibrary.org/obo/YPO_"^^ . - . - "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information."^^ . - . - . - . - "The International Standard Book Number (ISBN) is for identifying printed books."^^ . - . - "genes" . - "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line="^^ . - . - . - . - . - . - . - . - "0000022"^^ . - . - . + "nmdc" . + "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available."^^ . + . + . + . + . + . + . + . + "jcm" . + "^[a-z][a-z0-9_]+[a-z0-9]$"^^ . + "model" . + "https://genelab-data.ndc.nasa.gov/genelab/accession/"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + "http://isbndb.com/search-all.html?kw="^^ . + . + . + . . - "false"^^ . - . - . - "true"^^ . - . - "Barry Smith" . - "1"^^ . - . - . - "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-"^^ . + . + "nucleotide" . + . + . + . + "cazy" . + "Chemspider" . + "http://purl.org/spar/biro/$1"^^ . + . + "https://cropontology.org/rdf/CO_334:$1"^^ . + . + . + "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature."^^ . + . + "The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions."^^ . + . + "^AT\\d+$"^^ . + . + . + . + . + "KEGG LIGAND" . + . + . + "small molecule" . + . + "^PS\\d{5}$"^^ . + "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$"^^ . + "International Standard Serial Number" . + "0000630"^^ . + . + "bioinformatics" . + "^[1-9]\\d{0,5}$"^^ . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues."^^ . + . + . + . + "omia" . + . + . + . + "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field."^^ . + . + "^\\d+$"^^ . + . + "http://purl.obolibrary.org/obo/XLMOD_$1"^^ . + . + "health" . + "^\\w{4}$"^^ . + . + . + "gene" . + "ontology" . + . + "pmc" . +_:N7620f5ed203042c99a506f091ba3d8a8 "custserv@nlm.nih.gov" . + . + . + . + "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a"^^ . + "http://ascl.net/$1"^^ . + . . - . - . - . - . - "life science" . - "Chemical Entities of Biological Interest" . - "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems."^^ . - "medicine" . - . - . - . - . - . - . - "true"^^ . - . - "false"^^ . - "microbiome" . - . - "gene" . - . - . - . - "small molecule" . - . - . - "Mouse Brain Atlas" . - "EDAM Format" . - "^\\d{7}$"^^ . - . - . - . - "http://viroligo.okstate.edu/main.php?vid="^^ . - "https://data.terra.bio/ga4gh/drs/v1/objects/$1"^^ . - . - "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms."^^ . - "Animal Genome Sheep QTL" . - "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"^^ . - "Vertebrate Genome Annotation Database" . - "oai:cwi.nl:4725"^^ . - . - . - "BioProject" . - . - . - "^\\d{8}$"^^ . - . - . - "SNOMEDCT_US_2018_03_01" . - . - . - . - . - . - . - . - . - . - . - . - "mpjensen@buffalo.edu" . - "nif.std" . - . - . - "^virsi\\d+$"^^ . - . - . - . - . - . - . - . - . - "https://www.hipsci.org/lines/#/lines/$1"^^ . - . - . - . - . - "000000024"^^ . - . - . - . - . - . - . - . - "obo" . - "https://www.scopus.com/affil/profile.uri?afid="^^ . - . - "false"^^ . - "mutant strain" . - . - . - . - . - . - . - "genome" . - "nsrrc" . - "ro" . - . - . - . - "200906038218908385"^^ . - . - . - "false"^^ . - "Represent chemical entities having particular CHEBI roles"^^ . - "Alejandra Gonzalez-Beltran" . - . - . - . - "NBC00001"^^ . - . - . - . - "Health Surveillance Ontology" . - . - "false"^^ . - "false"^^ . - . - . - "false"^^ . - . - "^\\d+$"^^ . - "true"^^ . - "https://bioregistry.io/mirex:"^^ . - . - "http://www.probonto.org/ontology#PROB_$1"^^ . - "false"^^ . - . - . - "EY223054.1"^^ . - "https://biopragmatics.github.io/providers/hba/"^^ . - . - . - . - "The Reference Sequence (RefSeq) collection aims to provide a comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA), and protein products."^^ . - "spike00001"^^ . - . - . - . - . - "false"^^ . - "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods."^^ . - . - . - . - . - . - "http://bcrj.org.br/celula/$1"^^ . - "true"^^ . - "https://thebiogrid.org/interaction/$1"^^ . - "https://easychair.org/cfp/topic.cgi?tid=$1"^^ . - . - . - . - . - . - "andreas.ledl1@fhnw.ch" . - . - . - . - . - . - "973a9333-fec7-46dd-8eb5-25738f06ee54"^^ . - . - "1018"^^ . - . - . - "Datanator Metabolite" . - . - "http://addgene.org/$1"^^ . - . - "false"^^ . - . - "^[a-z][a-z]/[0-9]+$"^^ . - . - . - . - "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."^^ . - . - "Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . - "Guide to Pharmacology Ligand" . - . - . - . - "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."^^ . - . - . - "NIF Standard Ontology: Cell Types" . - "Entrez Gene" . - . - "119514"^^ . - . - "ontology" . - "transcriptomics" . - . - . - . - . - "4145692"^^ . - . - . - . - . - . - . - . - . - . - . - . - "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . - "https://umgear.org/p?id="^^ . - . - "ontology" . - . - . - . - . - . - . - "ECOCYC" . - . - . - . - . - . - "false"^^ . - "psdo" . - . - "ontology" . - . - . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - . - . - . - "MAM01234c"^^ . - . - "GitLab is The DevOps platform that empowers organizations to maximize the overall return on software development by delivering software faster and efficiently, while strengthening security and compliance. With GitLab, every team in your organization can collaboratively plan, build, secure, and deploy software to drive business outcomes faster with complete transparency, consistency and traceability."^^ . - "https://biomodels.net/vocab/idot.rdf#"^^ . - . - "dsm4" . - . - "dbSNP Reference SNP number" . - . - . - "Jeffrey Grethe" . - "rbk" . - . - . - . - . - . - . - . - . - . - "PMC3084216"^^ . - . - "functional genomics" . - . - . - . - "https://cls.shop/"^^ . - . - . - . - "https://www.dsmz.de/collection/catalogue/details/culture/"^^ . - . - . - . - . - . - "life science" . - "ConfIDent Event Series" . - "0001000"^^ . - "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID="^^ . - . - . - "biomedical science" . - . - . - "bioinformatics" . - "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."^^ . - "obo" . - . - . - . - . - . - . - "RiceNetDB Protein" . - "organic chemistry" . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - . - . - "EST database maintained at the NCBI." . - "ontology" . - . - . - "https://www.gbif.org/species/"^^ . - . - "mint" . - . - "ontology" . - "life science" . - "false"^^ . - . - . - . - . - "https://www.ebi.ac.uk/ega/datasets/"^^ . - "fungidb" . - . - . - . - "taxonomy" . - . - . - . - . - . - . - . - . - . - "drosophila" . - . - "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)."^^ . - . - . - . - "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1"^^ . - . - "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$"^^ . - . - "^[A-Za-z-0-9]+$"^^ . - . - . - "false"^^ . - . - . - "false"^^ . - . - . - "ontology" . - . - "http://bigg.ucsd.edu/compartments/"^^ . - . - . - . - . - "true"^^ . - . - . - . - "ApiDB_PlasmoDB" . - . + "pathogen" . + . + "Bio-MINDER Tissue Database" . + . + . + . + . + . + "bt0001"^^ . + . + . + . + . + . + . + . + . + . + "https://www.metanetx.org/chem_info/"^^ . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "TopFIND is a database of protein termini, terminus modifications and their proteolytic processing in the species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Saccharomyces cerevisiae and Escherichia coli."^^ . + . + "https://www.gwascentral.org/marker/$1"^^ . + "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry."^^ . + . + "earth science" . + "mutant mouse strain" . + . + . + . + . + . + "biopixie" . + . + . + "n.queralt_rosinach@lumc.nl" . + . + "ontology" . + . + . + "protein" . + "PA448710"^^ . + . + "https://www.webelements.com/"^^ . + . + . + "paxdb.organism" . + . + . + . + . + "http://purl.dataone.org/odo/ECSO_"^^ . + "http://pepbank.mgh.harvard.edu/interactions/details/$1"^^ . + . + . + "obo" . + "^H\\d+$"^^ . + "txpo" . + "genetics" . + . + . + "^\\d{7}$"^^ . + . + "biomedical science" . + . + . + . + . + "https://fairsharing.org/"^^ . + . + . + . +_:N079a0021d80a4a12a1492a0b06b42da6 "j@deltaflow.com" . + . + . + . + . + "cellular components" . + . + . + . + . + "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno="^^ . + . + "medicinal chemistry" . + . + "life science" . + . + . + . + . + "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research."^^ . + . + . + . + "pharmvar" . + "Oral Health and Disease Ontology" . + . + . + . + . + . + . + . + . + "genetics" . + . + . + . + . + . + . + "0290"^^ . + . + . + . + . + . + . + . + . + . + "mouse" . + . + "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$"^^ . + . + . + . + "nlx.org" . + "BEI_Resources" . + . + . + "gene" . + . + "https://www.checklistbank.org/dataset/"^^ . + "infectious" . + . + . + . + "^\\d+$"^^ . + "variation" . + "SNCTP000005580"^^ . + "false"^^ . + "NOAA Fisheries Species Directory" . + . + . + . + "gard" . + . + . + . + . + "BacMap Biography" . + . + "^MIRT\\d{6}$"^^ . + "Database of Clusters of Orthologous Genes grouped by pathways and functional systems. It includes the complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera."^^ . + "^\\d{7}$"^^ . + . + "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$"^^ . + . + "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant."^^ . + . + "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1"^^ . + . + . + . + . + . + . + "developmental biology" . +_:N753c4de613d34f5896c1c13730649c75 "MedDRA MSSO" . + . + . + "The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO."^^ . + . + . + . + . + . + . + "Document Components Ontology" . + . + . + . + . + "Ontology for Nutritional Studies" . + "https://www.ebi.ac.uk/ols4" . + "false"^^ . + . + "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . + "ChemIDplus" . + "https://mmp.sfb.uit.no/databases/marfun/#/records/"^^ . + "https://pdc.cancer.gov/pdc/study/$1"^^ . + "Raimond Winslow" . + . + . + "Ontology for Biobanking" . + "VEGA" . + "The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure."^^ . + . + "metnetdb" . + . + . + "0000773"^^ . + "hasOpenAccessRating"^^ . + . + "false"^^ . + . + "^\\d{8}$"^^ . + . + "gene" . + "ontology" . + . + "Maxwell L. Neal" . + "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project"^^ . + . + . + "FaceBase Data Repository" . + . + "http://viroligo.okstate.edu/main.php?vid=$1"^^ . + "https://dbpedia.org/ontology/$1"^^ . + . + . + . + "AgroPortal" . + "http://purl.org/sig/ont/fma/fma$1"^^ . + "development" . + . + "Jennifer C. Girón" . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/PATO_"^^ . + "false"^^ . + . + "owl" . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/protein/$1?report=genpept"^^ . + . + "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation."^^ . + . + . + "clinical data" . + "Urmas Kõljalg" . + . + . + . + "http://www.w3.org/ns/shacl#$1"^^ . + "genome" . + . + . + . + . + . + "Workflow"^^ . + "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession."^^ . + . + . + . + . + "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality."^^ . + . + "Drug_Central" . + "novus" . + . + . + . + "Molecule role (INOH Protein name/family name ontology)" . + . + . + "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line="^^ . + "https://www.probes-drugs.org/compound/"^^ . + . + . + "http://vbrc.org/gene_detail.asp?gene_id=$1"^^ . + "obo" . + . + . + . + "gene" . + "http://mycobrowser.epfl.ch/marinosearch.php?gene+name="^^ . "104674"^^ . - "false"^^ . - . - . - . - . - . - . - . - "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012."^^ . - . - . - "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."^^ . - . - . - . - . - "http://www.w3.org/ns/odrl/2/$1"^^ . - . - . - . - . - "FundRef" . - . -_:N8d459216004f4c60a3ff474a65dbf188 "Radiological Society of North America" . - . - . - "dna" . - . - . - . - "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"^^ . - . - . - . - . - . - . - . - . - . + . + "fix" . + "obo" . + . + . + . + "0000044"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium."^^ . + . + "Medical Action Ontology" . + "Biological Imaging Methods Ontology" . + . + "Annika Jahnke-Bornemann" . + . + "Deepak Unni" . + . + . + . + . + "Haruki Nakamura" . + "http://purl.obolibrary.org/obo/DRON_"^^ . + . + . + . + . + . + . + . + . + "Grape Ontology including OIV and bioversity descriptors. INRA July 2017"^^ . + "NIF Standard Ontology: Investigations" . + . + "protein" . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem="^^ . + . + "obo" . + "^B\\d+$"^^ . + "true"^^ . + . + "cl" . + "Animal Genome Pig QTL" . + . + . + "^\\d{7}$"^^ . + "Intrinsically Disordered proteins with Extensive Annotations and Literature" . + . + . + . + . + "MMP3888430"^^ . + . + . + "Robert Hoehndorf" . + "An ontology for representing the provenance of scientific claims and the evidence that supports them."^^ . + "MolBase" . + . + "1-55516888-G-GA"^^ . + "Sorghum ontology" . + . + . + "https://www.ebi.ac.uk/miriam/main/"^^ . + "0000000"^^ . + "^\\w+\\_\\w+$"^^ . + . + . + . + "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$"^^ . + "biology" . + "Robert Druzinsky" . + . + "false"^^ . + "ddinter.drug" . + . . - . - . - . - . - . - . - . - . - . - . - "intact" . - "Microbial Protein Interaction Database" . - . - "http://iflastandards.info/ns/fr/frbr/frbrer/$1"^^ . - . - "DP00086r013"^^ . - "taxonomy" . - . - . - . - "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - "dragondb.locus" . - . - . - . - "ENSG00000136147"^^ . - . - . - . - . - "Pier Luigi Buttigieg" . - "http://string.embl.de/interactions/"^^ . - "cell biology" . - . - "^C\\d+$"^^ . - "life science" . - "span" . - "00073"^^ . - . - . - "The Digital Object Identifier System is for identifying content objects in the digital environment."^^ . - "dashr@lisanwanglab.org" . - . - . - . - . - "^\\w{14}$"^^ . - . - . - . - "https://www.fishbase.ca/summary/"^^ . - . - . - . - . - . - . - "skos" . - . - "false"^^ . - . - . - . - . - . - "1.10.10.200"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "data sharing" . - . - "false"^^ . - . - . - "edeutsch@systemsbiology.org" . - "nci.drug" . - . - . - . - . - "pharmacology" . - . - . - . - . - "grin.taxonomy" . + "NLX" . + . + . + . + . + . + "0000008"^^ . + . + "sugarbind" . + . + "smp-m3w9hbe"^^ . + "materials informatics" . + . + . + "proteomics" . + . + "https://terminology.hl7.org/CodeSystem-v3-$1"^^ . + . + "This describes the metadata schema for the Gene Product Information (GPI) files in the Gene Ontology, i.e., the local unique identifiers in this identifier space refer to the columns in GPI files."^^ . + . + . + . + "false"^^ . + . + "false"^^ . + . + . + "animal model" . + . + . + _:N8723ec61d20e406aa41e6b7e1d2ee765 . + . + . + "life science" . + . + "P3DB Site" . + . + "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic."^^ . + "http://www.weizmann.ac.il/molgen/loqate/gene/view/$1"^^ . + . + . + . + . + . + "TripleExpression"^^ . + . + "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?"^^ . + "pombase" . + "protein" . + . + . + . + . + . + . + . + . + . + . + . + . + "CLPUB00496"^^ . + "genomics" . + . + . + "http://www.dpvweb.net/dpv/showdpv.php?dpvno=$1"^^ . + . + "expression" . + "nddf" . + "https://data.4dnucleome.org/experiment-set-replicates/$1"^^ . + . + . + . + . + . + . + "false"^^ . + . + "National Uniform Claim Committee Characteristic" . + . + "http://hdl.handle.net/"^^ . + . + . + . + . + "structure" . + "subject agnostic" . + . + . + "natural science" . + . + "http://www.gramene.org/db/literature/pub_search?ref_id="^^ . + "0001655"^^ . + "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId="^^ . + . + "vbase2" . + "Sustainable Development Goals Interface Ontology" . + . + "http://multicellds.org/MultiCellDB/"^^ . + "genomics" . + . + "ontology" . + "http://w3id.org/owlstar/"^^ . + . + . + . + "284196006"^^ . + "ontology" . + . + . + "http://purl.obolibrary.org/obo/BTO_"^^ . + "http://purl.obolibrary.org/obo/MRO_"^^ . + . + . + "https://www.ncbi.nlm.nih.gov/gene/$1"^^ . + "^\\d+$"^^ . + "0000062"^^ . + . + "ontology" . + . + "small molecule" . + "3403"^^ . + "alfred" . + "https://www.bgee.org/gene/"^^ . + . + . + . + "5UTR_107_ENST00000517291.2"^^ . + . + . + . + . + "https://bioregistry.io/cadsr:"^^ . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/FIDEO_"^^ . + "http://purl.obolibrary.org/obo/OAE_$1"^^ . + . + "https://herv.img.cas.cz/s/"^^ . + "^MAM\\d{5}\\w$"^^ . + . + "protein" . + "The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records."^^ . + "cho"^^ . + "https://www.sharkipedia.org/species/"^^ . + . + "The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. "^^ . + . + . + . + "SP_VAR" . + . + "false"^^ . + . + . + . + . + "^[A-Z]C\\d{1,3}$"^^ . + . + "gene" . + . + "epidemiology" . + . + "0000079"^^ . + . + . + . + . + . + . + "gendis" . + "S-EPMC6266652"^^ . + "Langual stands for \"langua alimentaria\" or \"language of food\". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases"^^ . + "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences."^^ . + . + "https://www.ebi.ac.uk/ena/data/view/$1"^^ . + . + . + . + . + . + . + . + . + . + . + "single nucleotide polymorphism" . + "DBCAT000600"^^ . + "structure" . + . + "cstr" . + . + . + . + . + "AS000060"^^ . + "true"^^ . + . + . + . . - "anatomy" . - . - "bigg.model" . - . - "longevity" . - "http://viaf.org/viaf/"^^ . - . - . - "Swiss Personalized Health Network Schema" . - "biomedical science" . - . - . - . - "MHC Restriction Ontology" . - "Metabolic Network Exchange Database" . - "https://progenetix.org/services/ids/$1"^^ . - . - . - "4390079"^^ . - "Monique Zahn" . - "gene expression" . - . - "biomedical science" . - "Matthew Brush" . - "ga4ghdos" . - "Regulation of Gene Expression"^^ . - . - . - "0000983"^^ . - "has download URL" . - . - . - . - . - "immunology" . - "https://mediadive.dsmz.de/ingredients/$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/RXNO_$1"^^ . - . - "RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project."^^ . - "Database of small human noncoding RNAs" . - . - . - . - "Carrine Blank" . - . - . - . - . - . - "MO000027"^^ . - "A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported."^^ . - . - . - . - . - . - . - . - "Michel Dumontier" . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_qual_"^^ . - . - . - "Yeast Metabolome Database" . - . - . - "life science" . - "A representation of the variety of methods used to make clinical and phenotype measurements."^^ . - . - "National Bibliography Number" . - "PubChem Element" . - "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."^^ . - . - . - . - . - . - "0040379"^^ . - . - . - "h2o"^^ . - . - . - "hoip" . - "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons."^^ . - . - . - . - . - "epidemiology" . - "0000006"^^ . - . - . - . - . - . - . - . - "agsc" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/MFOEM_"^^ . - "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network."^^ . - "Transport Systems Tracker" . - "life science" . - "immds"^^ . - . - . - . - . - . - . - "true"^^ . - . - . - "0000618"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/CLAO_"^^ . - . - . - . + "0000001"^^ . + . + "An ontology designed to support the semantic annotation of epidemiology resources"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + "http://aims.fao.org/aos/agrovoc/c_"^^ . + . + "computational biology" . + "false"^^ . + "Confidence Information Ontology" . + "genome" . + . + "KEGG Genome is a collection of organisms whose genomes have been completely sequenced."^^ . + . + . + . + . + "GiardiaDB" . + . + . + "^\\d{7}$"^^ . + . + "cdno" . + "comparative genomics" . + "obo" . + . + . + "Plant Environment Ontology" . + "https://bioregistry.io/$1:$2" . + . + . + . + "false"^^ . + . + "http://purl.obolibrary.org/obo/KISAO_"^^ . + . + "false"^^ . + . + "Cell line collections (Providers)"^^ . + . + . + . + . + . + . + _:Nf81ca7c123934d1fad4db7af794f82eb . + . + . + . + . + "The goal of the CAMEO (Continuous Automated Model EvaluatiOn) community project is to continuously evaluate the accuracy and reliability of protein structure prediction servers, offering scores on tertiary and quaternary structure prediction, model quality estimation, accessible surface area prediction, ligand binding site residue prediction and contact prediction services in a fully automated manner. These predictions are regularly compared against reference structures from PDB."^^ . + "classification" . + . + "true"^^ . + . + . + . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . + . + "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO="^^ . . - "registry" . - "http://purl.obolibrary.org/obo/PGDSO_"^^ . - . - . - "false"^^ . - . - . - "GeneAnnot: Microarray Gene Annotation" . - . - . - . - . - . - "projects_to"^^ . - "ontology" . - "imsr_tac" . - . - . - . - . - . - "genetics" . - "Tanja Bekhuis" . - . - "virology" . - "ontology" . - . - . - "A type for entries in the Bioregistry's registry." . - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id="^^ . - . - . - "true"^^ . - "20003"^^ . - "Descriptive Ontology for Linguistic and Cognitive Engineering" . - . - . - . - . - . - "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:"^^ . - . - "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization."^^ . - . - "gemet" . - "jeffvin.wong@utoronto.ca" . - . - . - . - "true"^^ . - . - . - . - . - "false"^^ . - . - "false"^^ . - . - . - . - . - "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:"^^ . - . - "apaonto" . - "transcriptomics" . - "Elspeth Bruford" . - "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"^^ . - "ontology" . - "http://purl.obolibrary.org/obo/GOREL_"^^ . - . - "gnomad" . - . - . - "pictar" . - . - . - . - "metacyc.reaction" . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/SPD_$1"^^ . - "^[\\w\\-.]{3,}$"^^ . - "false"^^ . - "Interaction Network Ontology" . - "NONCODE v3" . - "http://www.w3.org/ns/prov#"^^ . - "false"^^ . - . - "molecular biology" . - "http://www.informatics.jax.org/accession/MGI:$1"^^ . - . - . - . - . - . - . - . - . -_:Ndc3b3940e66846f99762ce35a820697b "more.info@allotrope.org" . - . - . - . - "biolegend" . - "ISO 3166-1 Country Code" . - "https://smpdb.ca/view/$1"^^ . - . - "^[A-Za-z]+\\/[0-9]+$"^^ . - "false"^^ . - . - "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA"^^ . - . - . - "An additional Japanese clinical trial registry"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "http://www.kegg.jp/entry/"^^ . - "opl" . - . - "obo" . - . - . - . - . - "pathway" . - . - "^LSM-\\d+$"^^ . - "venom" . - . - . - . - . - "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands."^^ . - . - "anatomy" . - "false"^^ . - "false"^^ . - "genetically modified pig" . - . - "Narcis Fernandez-Fuentes" . - "false"^^ . - . - . - "^\\d+\\-\\d+\\-\\d+$"^^ . - . - "ontology" . - . - . - "sdgio" . - . - . - "olatdv" . - . - . - . - . - . - . - . - "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1"^^ . - "false"^^ . - "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The reaction data set provides information regarding the organism in which a reaction is observed, pathways in which it participates, and links to further information."^^ . - "An ontology representing knowledge about salmon, features of their habitats, salmon stakeholders, and related entities. This ontology is considered to be in the early stages of development, though it is based upon considerable previous work. Contributions of all kinds are welcome and encouraged, including alignments, updates to existing terms, and new terms."^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "developmental biology" . - . - . - "metadata" . - . - . - "^\\d+$"^^ . - "false"^^ . - . - "http://purl.obolibrary.org/obo/MPIO_"^^ . - "http://www.jcvi.org/charprotdb/index.cgi/view/"^^ . - . - "OMIMPS" . - . - . - "http://getentry.ddbj.nig.ac.jp/getentry/dad/"^^ . - "RYYVLZVUVIJVGH-UHFFFAOYSA-N"^^ . - "translation_language"^^ . - . - . - . - . - . - "^\\d+$"^^ . - . - "genetics" . - . - "metagenomics" . - "co_330" . - . - "62"^^ . - "https://www.ebi.ac.uk/chembl/target/inspect/$1"^^ . - . - "ncit" . - . - "health science" . - "false"^^ . - . - . - . - . - . - . - . - "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1"^^ . - . - . - "NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites"^^ . - "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan="^^ . - "laml_tcga_pub"^^ . - "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries"^^ . - . - "obo" . - . - "computational chemistry" . - . - . - . - . - _:N11a4fc5962bd4af29b75e3ad1cf69ed3 . - "Pathogen Transmission Ontology" . - "^[0-9]+$"^^ . - . - "^\\d+$"^^ . - "false"^^ . - "SpliceNest" . - . - . + . + "false"^^ . + "Catalog of purchasable reagents and building blocks"^^ . + . + "bigg.model" . + "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_"^^ . + "http://hawaii.eagle-i.net/i/"^^ . + . + . + "AN0097748"^^ . + . + "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." . + . + "ontology" . + "bioinformatics" . + "ILMN_129894"^^ . + . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information."^^ . + . + "MGnify Analysis" . + . + . + . + . + "rebec" . + . + . + "rna" . + "Chemical Information Ontology" . + . + . + . + . + . + . + "ontology" . + "RXNO is the name reaction ontology. It contains more than 500 classes representing organic reactions such as the Diels–Alder cyclization."^^ . + . + . + "An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata."^^ . + "https://www.wormbase.org/get?name="^^ . + . + "https://athena.ohdsi.org/search-terms/terms/$1"^^ . + "biodiversity" . + . + . + . + . + . + . + . + "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID="^^ . + . + "^SIGNOR\\-[A-Z]+\\d+$"^^ . + . + "false"^^ . + "http://www.jstor.org/stable/"^^ . + . + "https://bioregistry.io/vsdb:"^^ . + . + . + "false"^^ . + . + "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases."^^ . + . + "pancreatic development" . + . + . + . + . + . + . + . + . + "NIFEXT" . + . + "biomedical science" . + . + . + . + . + "ProGlycProt" . + "false"^^ . + "repeatsdb.structure" . + . + . + . + . + . + . + "identifier of an entry in the NCI Drug Dictionary"^^ . + . + "ala"^^ . + . + "https://purl.dataone.org/odo/ADCAD_$1"^^ . + "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + . + . + . + "live mouse" . + "The Cell: An Image Library™ is a freely accessible, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes."^^ . + . + . + "dommino" . + . + "transgenic" . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "Hypertension Ontology" . + . + . + . + . + . + "Daniel Sonenshine" . + "0000194"^^ . + . + "false"^^ . + . + "Mathematical modeling ontology" . + . + . + . + "1"^^ . + . + "false"^^ . + "structure" . + "Enzo Life Sciences" . + . + . + . + . + . + "https://scicrunch.org/scicrunch/interlex/view/ilx_$1"^^ . + "protein" . + . + . + . + . + . + . + . + . + "402558626"^^ . + . + . + . + . + . + . + "lynn.schriml@gmail.com" . + . + "ISBN-10" . + . + . + . + . + . + . + "neuroname" . + "life science" . + . + . + . + . + "Identifiers.org Terms" . + "ontology" . + . + "richard@cyganiak.de" . + . + "^\\d+$"^^ . + . + . + . + "2679240"^^ . + . + . + . + "biologics" . + . + "false"^^ . + . + "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1"^^ . + . + "lincs.smallmolecule" . + . + . + . + "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins."^^ . + "botany" . + "genetic" . + . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code="^^ . + . + . + "Tetrahymena Stock Center" . + . + . + . + . + . + . + "^.*/.*$"^^ . + "http://purl.obolibrary.org/obo/MIRNAO_$1"^^ . + . + . + . + "iceberg.family" . + . + "Golm Metabolome Database Profile" . + "false"^^ . + . + . + . + "comparative genomics" . + . + "HomoloGene" . + . + . + . + "Association-Rule-Based Annotator" . + "https://www.alzforum.org/mutations/"^^ . + . + . + . + "protein" . + . + . + . + . + . + . + . + "ontology" . + . + . + "00000021"^^ . + "^YMDB\\d+$"^^ . + "ontology" . + "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=$1"^^ . "false"^^ . - "true"^^ . - . - "https://cropontology.org/rdf/CO_357:"^^ . - "gene" . - . - "FAIR* Reviews Ontology" . - . - "http://www.dpvweb.net/dpv/showdpv.php?dpvno="^^ . - . - . - . - . - . - "0002902"^^ . - "Metabolites in the Xenobiotics Metabolism Database."^^ . - . - . - . - "Current Procedural Terminology" . - "false"^^ . - . - "VMH metabolite" . - "0000095"^^ . - . - "^\\w+$"^^ . - . - . - . - "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/OHD_"^^ . - . - "false"^^ . - . - "life science" . - . - "medicine" . - "wormbase" . - . - . - "B2067"^^ . - . - "preclinical studies" . - "CHEBI" . - "1354581"^^ . - . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/MOD_$1"^^ . - . - . - . - "https://eds.gene.le.ac.uk/home.php?select_db="^^ . - "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science."^^ . - . - . - . - "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."^^ . - . - . - . - . - "ontology" . - "Genome assembly database - INSDC accessions" . - . - . - . - . - . - . - . - . - . - "tsc" . - . - . - "0000078"^^ . - "epigenetics" . - . - . - . - "^\\d{7}(_\\d)?$"^^ . - . - "Tb927.8.620"^^ . - "AmoebaDB" . - "strain" . - . - . - "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E."^^ . - "molecule" . - "The pattern for expanded URIs in the given resource" . - . - "anatomy" . - . - . - . - . - . - . - . - "^DBMET\\d+$"^^ . - . - "lpt" . - . - . - . - . - "genomics" . - "243002_at"^^ . - . - . - "0045310"^^ . - . - "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB."^^ . - "bioinformatics" . - . - . - "faldo" . - . - . - . - . - . - . - "ontology" . - "5359"^^ . - . - . - . - . - "nsv3875336"^^ . - "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name="^^ . - . - . - . - . - "https://bioregistry.io/polbase:"^^ . - "fix" . - . - . - "alan.bridge@isb-sib.ch" . - . - . - . - . - . - . - . - . - "One of the many goals of the BCBC was to develop and maintain databases of useful research resources. A total of 813 different scientific resources were generated and submitted by BCBC investigators over the 14 years it existed. Information pertaining to 495 selected resources, judged to be the most scientifically-useful, has been converted into a static catalog, as shown below. In addition, the metadata for these 495 resources have been transferred to dkNET in the form of RDF descriptors, and all genomics data have been deposited to either ArrayExpress or GEO. [from homepage]"^^ . - "^\\w{3}\\d{5}(\\.\\d+)?$"^^ . - "true"^^ . - "obo" . - . - "Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells."^^ . - "ido" . - "agriculture" . - . - "metanetx.chemical" . - . - . - . - "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions."^^ . - . - . - "http://data.food.gov.uk/codes/foodtype/id/$1"^^ . - "obo" . - . - . - . - "enzo" . - "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records."^^ . - "https://www.gleif.org/lei/$1"^^ . - . - . - "false"^^ . - . - . - . - "false"^^ . - "civic.gid" . - . - . - . - . - . - "^[0-9\\.]+$"^^ . - . - . - . - . - . - . - . - . - "elm" . - "^\\d{7}$"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/ONTOAVIDA_$1"^^ . - . - . - . - "obo" . - . - "GCF_000001405"^^ . - . - "biomedical science" . - . - . - . - "wes_schafer@merck.com" . - . - . - . - . - "HsapDO:0000004"^^ . - . - "wbbt" . - "SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web"^^ . - . - "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts."^^ . - . - . - . - . - . - "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."^^ . - "XB-GENE-922462"^^ . - . - "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"^^ . - "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid="^^ . - "MIRIAM Registry collection" . - . - "BioAssay Ontology" . - . - "DailyMed" . - . - . - "Coriell Institute for Medical Research" . - . - . - "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines."^^ . - . - "has alternative prefix" . - "http://purl.obolibrary.org/obo/LPT_"^^ . - "ChemBank is a public, web-based informatics environment created by the Broad Institute's Chemical Biology Program and funded in large part by the National Cancer Institute's Initiative for Chemical Genetics (ICG)."^^ . - . - "HOMD Sequence Metainformation" . - "https://go.drugbank.com/bio_entities/"^^ . - "preprints" . - "KEGG Drug Group" . - . - . - . - "antibodies" . - . - . - . - "ontology" . - . - . - . - . - "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1"^^ . - "IPI00000001"^^ . - "false"^^ . - . - . - . - "ontology" . - . - . - "obo" . - . - . - "false"^^ . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - "idr" . - . - . - . - . - . - . - "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1"^^ . - . - . - . - "ndc" . - . - "Dataset"^^ . - "1915"^^ . - "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"^^ . - . - . - "nucleotide" . - . - . - . - "https://zenodo.org/record/$1"^^ . - . - . - . - . - . - . - . - . - "CID" . - . - "false"^^ . - . - . - . - "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1"^^ . - . - "rgd" . - . - . - . - "http://www.ncbi.nlm.nih.gov/clinvar/$1"^^ . - . - "http://www.isni.org/isni/$1"^^ . - "ThoracicArtery"^^ . - . - . - "p.buttigieg@gmail.com" . - "https://www.aapc.com/codes/cpt-codes/$1"^^ . - . - "fsnp" . - . - . - "0019171"^^ . - . - . - "false"^^ . - "sgn" . - "sequenced strain" . - "OSR00185W"^^ . - "14"^^ . - . - . - . - "https://www.pombase.org/gene/$1"^^ . - "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." . - . - "genomics" . - . - "^MMP\\d+.\\d+$"^^ . - "^\\w+_COVID19_[-\\w]+$"^^ . - . - . - "life science" . - "biostudies" . - "https://www.genecards.org/cgi-bin/carddisp.pl?gene="^^ . - . - . - . + "^\\d+$"^^ . + . + "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO."^^ . + . + "https://bioregistry.io/vipr:"^^ . + . + "Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. [from RRID]"^^ . + "TIGR00010"^^ . + . + . + . + . + . + . + "mark@gersteinlab.org" . + "http://purl.obolibrary.org/obo/RO_"^^ . + "Internet Standard -- IETF Request for Comments" . + "https://transyt.bio.di.uminho.pt/reactions/"^^ . + . + "0000984"^^ . + . + . + "comparative genomics" . + . + "68513255-fc44-4041-bc4b-4fd2fae7541d"^^ . + . + . + . + "^[A-Z0-9*:]+$"^^ . + "botany" . + "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#"^^ . + . + . + . + . + "https://mips.helmholtz-muenchen.de/corum/?id=$1"^^ . + "agriculture" . + . + . + . + . + . + "true"^^ . + "pdb" . + . + "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides."^^ . + "CASID" . + . + . + "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1"^^ . + "CONSO00010"^^ . + . + . + "imgt.hla" . + . + . + . + . + "vfdb.gene" . + "Luana Licata" . + . + . + . + "3546"^^ . + . + "genome" . + . + . + . + . + . + . + "mim" . + . + "false"^^ . + . + "https://sciflection.com/"^^ . + . + . + . + . + . + . + . + "ontology" . + . + . + . + "Identifier used by the Cancer Chemotherapy National Service Center."^^ . + . + "preclinical studies" . + "false"^^ . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."^^ . . - "^\\d+$"^^ . - "https://www.worldwildlife.org/ecoregions/$1"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "faseb list" . - . - . - . - . - "CRISPRdb" . - "^(MNXM\\d+|BIOMASS|WATER)$"^^ . - . - "d4e2515"^^ . - . - "health science" . - . - "false"^^ . - "population genetics" . - . - . - . - "ChEMBL" . - . - "OMA Group" . - . - "https://shop.vbc.ac.at/vdrc_store/$1.html"^^ . - . + . + . + "anatomy" . + . + "biology" . + . + "false"^^ . + "polbase" . + . + "^[0-9]{1,7}$"^^ . + . + "fungorum" . + "virsirna" . + . + "false"^^ . + "false"^^ . + . + . + . + . + . + "co_356" . + . + . + . + . + . + . + . + . + . + "NIST Chemistry WebBook" . + . + . + . + "The Human Unidentified Gene-Encoded (HUGE) protein database contains results from sequence analysis of human novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . + . + "organic chemistry" . + "phylogenetics" . + . + "^\\d{8}$"^^ . "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc."^^ . - "ontology" . - . - . - . - . - . - . - . - . - . - . - . - "http://thebiogrid.org/$1"^^ . - . - "cgsc" . - "http://www.jstor.org/stable/$1"^^ . - "0000021"^^ . - . - "^[a-zA-Z0-9_-]{3,}$"^^ . - "European Collection of Authenticated Cell Culture" . - . - "genome" . - "https://publons.com/researcher/$1"^^ . - "SNR17A"^^ . - . - "T0599"^^ . - "ToxoDB" . - . - . - "1981638"^^ . - . - . - . - "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id="^^ . - "Support Email" . - "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . - "Identifier for a species on the noaa fisheries website"^^ . - "MGnify Project" . - . - . - . - "JAX Mice" . - . - "https://www.cellbankaustralia.com/$1.html"^^ . - "IMGT/PRIMER-DB" . - . - . - . - . - . - . - . - . - . - . - . - "NLX" . - "PolBase" . - . - . - "life science" . - . - . - . - "anatomy" . - . - . - "https://www.storedb.org/store_v3/download.jsp?fileId="^^ . - . - . - . - "This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki."^^ . - . - . - . - . - . - "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1"^^ . - . - . - . - . - "https://www.uniprot.org/proteomes/"^^ . - "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$"^^ . - . - . - "It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources"^^ . - . - . - "ontology" . - "The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]"^^ . - . - . - "neurobiology" . - . - "ec-code" . - . - . - . - . - . - . - . - . - "EG10173"^^ . - . - "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1"^^ . - . - "biomedical science" . - "https://amzn.com/$1"^^ . - "false"^^ . - . - . - . - "0001927"^^ . - "small molecule" . - "http://purl.dataone.org/odo/ECSO_$1"^^ . - "imdrf" . - "false"^^ . - . - . - . - "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . - "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO="^^ . - . - . - "research" . - . - "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process."^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/REO_$11"^^ . - . - "http://sweetontology.net/matrMineral/"^^ . - "Getty Thesaurus of Geographic Names" . - . - . - "bioinformatics" . - "FuncBase Mouse" . - "http://immunet.cn/bdb/index.php/mimoset/$1"^^ . - "false"^^ . - "Frederic Bastian" . - . - "https://cropontology.org/rdf/CO_333:$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/COVOC_"^^ . - "taxonomy" . - "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation."^^ . - "strain" . - . - . - . - . - . - . - . - . - "https://biopragmatics.github.io/providers/diseaseclass/"^^ . - . - . - "0000030"^^ . - . - "iceberg.ime" . - . - . - "H00076"^^ . - . - . - . - "BDGP insertion DB" . - "16941567"^^ . - . - . - . - "false"^^ . - "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id="^^ . - . - . - . - "377550"^^ . - . - . - "^\\d{3}\\.\\d{2}$"^^ . - "biomedical science" . - "false"^^ . - . - . - "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."^^ . - . - . - . - . - . - . - "piroplasma" . - . - "false"^^ . + "pier.buttigieg@awi.de" . + . + . + "fdb8a927-45c3-48b7-9743-cbb5e16837fa"^^ . + "genotype" . + . + . + . + . + . + "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form="^^ . + . + . + "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator)."^^ . + "Open Tree of Life" . + . + . + "phylogenetics" . + . + . + "false"^^ . + . + . + "seinet" . + . + "http://purl.obolibrary.org/obo/DDPHENO_"^^ . + . + "false"^^ . + . + . + . + . + "Human Metabolome Database" . + "ICD-11" . + . + "false"^^ . + "Cephalopod Ontology" . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "https://biopragmatics.github.io/providers/msigdb/"^^ . + . + "structural biology" . + "General Enquiries" . + . + . + . + . + . + . + . + . + . + . + "Kyoto Encyclopedia of Genes and Genomes" . + . + "^[0-9]+$"^^ . + "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . + . + "ontology" . + "fypo" . + "false"^^ . + "http://bigg.ucsd.edu/models/universal/metabolites/$1"^^ . + . + . + "Genetic Code" . + . + . + "spider" . + "molbase" . + . + "false"^^ . + . + . + . + . + "http://birdgenenames.org/cgnc/GeneReport?id=$1"^^ . + . + "The Veterinary Nomenclature (VeNom) is a standard set of clinical veterinary terms for use in referral veterinary hospital electronic patient records and first opinion veterinary practice management systems."^^ . + . + . + . + . + "SM00015"^^ . + "proteins" . + . + "false"^^ . + . + . + . + . + . + "Xeni Kechagioglou" . + . + "imr" . + "http://purl.obolibrary.org/obo/SOPHARM_$1"^^ . + . + "pato" . + "bykdb" . + . + "Bgee stage" . + "Hs635"^^ . + . + . + "http://purl.obolibrary.org/obo/OPMI_$1"^^ . + . + "Epidemiology Ontology" . + . + "ontology" . + . + "1000560"^^ . + . + "^[0-9]+$"^^ . + . + "structural bioinformatcs" . + "Genotype-Tissue Expression" . + . + . + "C. elegans Gross Anatomy Ontology" . + "Cell line databases/resources"^^ . + . + . + . + . + "^\\d+$"^^ . + . + "https://bioregistry.io/dragondb.dna:"^^ . + . + "The cBioPortal for Cancer Genomics" . + . + . + "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes."^^ . + "so" . + "hpm.protein" . + "http://purl.obolibrary.org/obo/OVAE_$1"^^ . + "structure" . + . + "A vocabulary about species to support the environmental research community in Arizona and New Mexico"^^ . + . + "false"^^ . + "pubchem.bioassay" . + . + . + . + . + . + . + "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs)."^^ . + . + . + . + . + . + "MCDS_C_0000000001"^^ . + . + "80001"^^ . + "molecules" . +_:N6ec02d7552d843f1b768c8c76746301a "Jonathan Bard" . + . "false"^^ . - "https://ocid.ontochem.com/prefname?ocid=$1"^^ . - . - . - "YOR172W_571.0"^^ . - "Probability Distribution Ontology" . - . - "http://purl.obolibrary.org/obo/GNO_$1"^^ . - "immunogenetics" . - "C0020004/4992"^^ . - "^\\d{7}$"^^ . - . - . - . - "240-17-488-3-4-12"^^ . - . - . - "CRISP Thesaurus" . - . - "The Behaviour Change Intervention Ontology" . - . - . - . - . - . - "genome" . - . - "envo" . - . - . - . - . - "life science" . - "Dalia Alghamdi" . - . - . - . - . - "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid="^^ . - . - "ExO" . - "Nucleotide Sequence Database" . - . - . - . - . - "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode="^^ . - . - . - . - "http://purl.bioontology.org/ontology/HCPCS/"^^ . - . - "md.tyers@umontreal.ca" . - "protein" . - . - . - . - . - "lipro" . - . - "Langual stands for \"langua alimentaria\" or \"language of food\". it is an automated method for describing, capturing and retrieving data about food. the work on langual was started in the late 1970's by the center for food safety and applied nutrition (cfsan) of the united states food and drug administration as an ongoing co-operative effort of specialists in food technology, information science and nutrition. the thesaurus provides a standardized language for describing foods, specifically for classifying food products for information retrieval. langual is based on the concept that: - any food (or food product) can be systematically described by a combination of characteristics - these characteristics can be categorized into viewpoints and coded for computer processing - the resulting viewpoint/characteristic codes can be used to retrieve data about the food from external databases"^^ . - "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation."^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/GO_"^^ . - . - . - . - "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."^^ . - "O80725"^^ . - . - . - . - . - "cell biology" . - . - "https://cropontology.org/rdf/CO_360:"^^ . - . - "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles"^^ . - "CranioMaxilloFacial ontology" . - "Scholarly Contributions and Roles Ontology" . - . - "8639.1"^^ . - . - . - "https://easychair.org/cfp/topic.cgi?tid="^^ . - . - . - . - "S7000002168151102"^^ . - . - . - . - "Yeast Intron Database v3" . - . - . - "taxonomy" . - "^\\d+$"^^ . - . - "^\\w+$"^^ . - "jwest@rcsb.rutgers.edu" . - "A01M1/026"^^ . - "^\\d+$"^^ . - . - . - "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2"^^ . - "http://ratmap.org/Showgene.php?gene_stable_id=$1"^^ . - "false"^^ . - "https://id.loc.gov/authorities/$1"^^ . - . - . - . - "sdbs" . - "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."^^ . - . - "^\\d+$"^^ . - . - "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1"^^ . - . - . - . - "metagenomics" . - . - "https://www.mlcommons.org/mlc-id/$1"^^ . - "Global Research Identifier Database" . - "UMLSSG" . - "https://lincs.hms.harvard.edu/db/cells/$1"^^ . - "biosample" . - . - . - . - "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en"^^ . - . - . - "ontology" . - . - . - "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1"^^ . - . - . - . - . - . - . - "Prefix Commons" . - . - . - "https://bioregistry.io/metaregistry/$1"^^ . - . - . - "1000100"^^ . - "https://precision.fda.gov/uniisearch/srs/unii/"^^ . - . - . - . - . - . - . - "1"^^ . - "G. Thomas Hayman" . - . - . - "P4355"^^ . - . - "proteomics" . - "mf" . - . - "Sue Bello" . - "false"^^ . - . - . - . - . - . - . - . - "prediction" . - . - "botany" . - . - . - . - . - . - . - . - "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories."^^ . - "Gene Location" . - "5112"^^ . - . - . - . - "false"^^ . - . - . - "https://www.pesticideinfo.org/chemical/"^^ . - . - "^URS[0-9A-F]{10}(\\_\\d+)?$"^^ . - . - . - . - "obo" . - . - "UniProt Proteomes" . - . - . - . - "biomedical science" . - . + . + "enzyme" . + "^TTDS\\d+$"^^ . + . + . + . + . + . + . + "ssbd.project" . + . + "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format."^^ . + "embryonic stem cell" . + . + . + . + "br/1"^^ . + . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . + . + . + . + . + "rnaloops" . + . + . + . + "mao" . + . + . + . + . + "patrice.buche@inrae.fr" . + . + "Starting in the fall of 2007, a collaborative group of influenza researchers have established an influenza ontology. The influenza ontology is an application ontology. Consolidated influenza sequence and surveillance terms from resources such as the BioHealthBase (BHB), a Bioinformatics Resource Center (BRC) for Biodefense and Emerging and Re-emerging Infectious Diseases, the Centers for Excellence in Influenza Research and Surveillance (CEIRS)"^^ . + . + . + . + . + . + "viaf" . + "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1"^^ . + . + "false"^^ . + . + . + . + . + . + . + "yuki.yamagata@riken.jp" . + . + "https://cryptodb.org/cryptodb/app/record/gene/$1"^^ . + . + . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus."^^ . + "ontology" . + . + "0000128"^^ . + . + . + . + . + . + . + . + "PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them."^^ . + . + . + . + "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments."^^ . + . + . + "enzyme" . + . + . + "aphidbase.transcript" . + . + . + . + "RNACentral" . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "Stephen Fisher" . + . + "soybase" . + . + "life science" . + . + "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references."^^ . + "life science" . + . + "uniprot.proteome" . + "false"^^ . + . + "neurology" . + . + "ontology" . + . + . + . + "0000050"^^ . + "http://www.geneontology.org/formats/oboInOwl#"^^ . + . + . + "Bitbucket is a Git-based source code repository hosting service owned by Atlassian."^^ . + "life science" . + . + . + . + . + . + . + "ZEA_0015177"^^ . + "http://www.begdb.com/index.php?action=oneMolecule&state=show&id="^^ . + "https://genelab-data.ndc.nasa.gov/genelab/accession/$1"^^ . + "Rahuman Sheriff" . + "http://www.w3.org/2003/11/swrl#"^^ . + . + . + "civic.did" . + "doi" . + "BIOMD" . + . + "X58356"^^ . + . + "ontology" . + . + "TA_H3"^^ . + . + "http://arabidopsis.org/servlets/TairObject?accession=AASequence:"^^ . + . + . + "http://vegbank.org/cite/$1"^^ . + "taxonomy" . + "BioNumbers" . + . + . + . + . + . + "Mammalian Feeding Muscle Ontology" . + . + . + . + . + . + "environmental science" . + . + . + . + . + "false"^^ . + "T06648"^^ . + . + "Publication Provenance Prefixes" . + . + "insdc.gcf" . + . + . + "GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray targets most of the known and predictive genes of the human genome as it is described today in the public domain. It is comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes. These 55,000 probes represent well annotated, full length, and partial human gene sequences from major public databases. GE Healthcare/Amersham Biosciences CodeLink? Human Whole Genome Bioarray probe sequences were selected from the NCBI UniGene build #165, RefSeq database (January 5, 2004 release) and dbEST database (January 8, 2004 release)."^^ . + . + "The Environment Ontology is a resource and research target for the semantically controlled description of environmental entities. The ontology's initial aim was the representation of the biomes, environmental features, and environmental materials pertinent to genomic and microbiome-related investigations."^^ . + "biomedical science" . + "ogg" . + . + "https://animaldiversity.org/accounts/"^^ . + . + "identifier for a fungus taxon in Index Fungorum"^^ . + . + "bibliography" . + . + . + "topics" . + "health science" . + . + . + "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1"^^ . + . + . + . + . + "https://www.ebi.ac.uk/chembl/target/inspect/$1"^^ . + . + . + . + . + . + "Japan Chemical Substance Dictionary" . + . + . + . + . + . + "stian@soiland-reyes.com" . + . + . + "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics."^^ . + . + . + "http://purl.obolibrary.org/obo/OPL_$1"^^ . + . + . + "vendor" . + . + "00000003"^^ . + . + . + . + "https://proteinensemble.org/$1"^^ . + . + . + . + "false"^^ . + . + . + "data visualization" . + "http://purl.obolibrary.org/obo/FBcv_$1"^^ . + "phenotype" . + . + . + "^\\d{7}$"^^ . + . + "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1"^^ . + . + . + . . - "life science" . - . -_:N3592e45525ca4d49ad9426f35d117032 "sschurer@med.miami.edu" . - "https://eol.org/pages/$1"^^ . - "https://biokb.lcsb.uni.lu/fact/"^^ . - . - . - . - . - . - . - "ENSG00000026508"^^ . - "Fahim Imam" . - . - . - . - "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$1"^^ . - . - "true"^^ . - "Inge.Jonassen@uib.no" . - "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids."^^ . - . - . - . - . - . - . - "https://w3id.org/biolink/vocab/$1"^^ . - . - "life science" . - "PANTHER Pathway Component" . - "ontology" . - . - "taxid" . - "cell biology" . - . - . - . - "FoodEx2 is a comprehensive food classification and description system aimed at covering the need to describe food in data collections across different food safety domains."^^ . - "interaction" . - "false"^^ . - "http://purl.obolibrary.org/obo/EHDAA_$1"^^ . - "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read."^^ . - . - "^R\\d+$"^^ . - "http://purl.uniprot.org/annotation/VAR_"^^ . - . - "molecular biology" . - . - "http://www.drugtargetontology.org/dto/DTO_$1"^^ . - . - "PicTar" . - . - "0.7-123"^^ . - "irgsp" . - . - . - . - . - "genome" . - . - . - . - "bioinformatics" . - . - "^MAR\\d{5}$"^^ . - "https://bioregistry.io/cubedb:"^^ . - . - "false"^^ . - "December 2019"^^ . - . - . - "ligea" . - . - . - . - . - . - . - . - . - . - . - "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage."^^ . - . - . - . - . - "10142"^^ . - . - . - . - . - "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#"^^ . - . - . - . - . - . - . - "https://massbank.jp/RecordDisplay?id=$1"^^ . - . - . - . - . - . - . - _:Nf7e91c76916647ba99dee0cb63cf2da8 . - . - . - "KEGG_PATHWAY" . - "The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas."^^ . - . - . - . - . - . - . - . - . - "MMsINC" . - . - . - . - "7207"^^ . - . - . - . - . - . - "Erik Segerdell" . - "Cell line databases/resources"^^ . - "obo" . - . - . - . - . - "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1"^^ . - . - . - "http://purl.obolibrary.org/obo/MFOEM_$1"^^ . - . - . - "Vertebrate Gene Nomenclature Committee" . - . - . - "^\\d+$"^^ . - . - . - "The Cell Cycle Ontology is an application ontology that captures and integrates detailed knowledge on the cell cycle process."^^ . - "http://purl.obolibrary.org/obo/PRIDE_"^^ . - . - . - . - . - "https://www.fao.org/fishery/en/species/"^^ . - . - "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records."^^ . - . - "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites."^^ . - . - . - "genome" . - "ontology" . - "sstoss" . - . - . -_:N8d459216004f4c60a3ff474a65dbf188 "radlex-feedback@lists.rsna.org" . - "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility."^^ . - . - "false"^^ . - . - " http://edamontology.org" . - . - . - . - "johnbeverley2021@u.northwestern.edu" . - "^[0-9]+$"^^ . - "fernanda.dorea@sva.se" . - "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"^^ . - . - . - . - . + . + "1374"^^ . + . + . + . + . + . + . + . + "273"^^ . + . + "life science" . + . + . + . + "neuromorpho" . . - . - . - "false"^^ . - . - . - . - . - . - . - . - "https://bioregistry.io/hivreagentprogram:"^^ . - . - "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1"^^ . - . - . - "^[0-9]+$"^^ . - . - . - "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo="^^ . - . - . - . - . - . - . - . - . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . - . - . - . - "medlineplus" . - . - . - . - "Alan Bridge" . - . - . - "http://purl.obolibrary.org/obo/BCO_"^^ . - . - "Chris Stoeckert" . - "ino" . - . - "Mathias Brochhausen" . - . - "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:"^^ . - "pencehe@oneonta.edu" . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1"^^ . - . - "Will Simpson" . - "Unipathway" . - . - . - . - . - "Gwen Frishkoff" . - . - . - . - . - . - . - . - "true"^^ . - . - . - "Zenodo" . - "DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects."^^ . - "fairsharing.organization" . - . - "SD00043"^^ . - "lang"^^ . - "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research."^^ . - . - . - "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer"^^ . - "agriculture" . - "Discovery tool for biomedical research resources available at institutions throughout the U.S."^^ . - . - "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1="^^ . - . - . - "genome" . - "^(\\d+)|(\\w+)$"^^ . - . - "emmo" . - . - . - . - "UM-BBD_enzymeID" . - . - "CO_325" . - . - "Time Ontology in OWL" . - . - "906801"^^ . - "ontology" . - . - . - "kyinno" . - . - . - "^DG\\d+$"^^ . - "ontology" . - . - "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions."^^ . - . - "drugs" . - . - . - "MAR11851"^^ . - . - "false"^^ . - . - . - . - . - "John Garavelli" . - . - "Vertebrate Taxonomy Ontology" . - . - "biomedical science" . - "multicellds.collection" . - . - "http://purl.org/spar/scoro/$1"^^ . - . - "false"^^ . - "co_365" . - . - . - . - "An ontology based on PRO for describing the contributions that may be made, and the roles that may be held by a person with respect to a journal article or other publication (e.g. the role of article guarantor or illustrator)."^^ . - . - . - . - . - "44259"^^ . - . - "obo" . - "structure" . - . - . - "life science" . - . - . - . - . - "mgilson@health.ucsd.edu" . - . - _:N402ce698581442dcae89e6da831fb81e . - "https://morpheus.gitlab.io/models/$1"^^ . - "ontology" . - . - "^\\d{4}$"^^ . - . - . - . - . - . - "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones."^^ . - "metatlas.reaction" . - . - . - . - "statistics" . - . - "ambystoma" . - . - . - "Coli Genetic Stock Center" . - "^ST[0-9]{6}$"^^ . - "false"^^ . - . - . - . - . - . - "glygen" . - "^\\d+$"^^ . - . - "ensembl.metazoa" . - "ogms/OMRE" . - "puro" . - . - "Ryan Brinkman" . - . - . - . - . - . - "ecosystem science" . - . - . - . - . - . - "http://www.w3.org/2006/time#$1"^^ . - . - . - . - . - "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species."^^ . - "https://www.metanetx.org/comp_info/"^^ . - "https://publons.com/publon/$1"^^ . - . - "drugbank.reaction" . - "subject agnostic" . - . - . - . - . - "medicine" . - . - "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions"^^ . - "NCATS Drugs" . - "http://rest.bmrb.wisc.edu/bmrb/$1/html"^^ . - . - "0001707"^^ . - . - "false"^^ . - "biomedical science" . - . - "9606"^^ . - . - . - . - "ontology" . - "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business."^^ . - . - . - "0000000"^^ . - "nmpdr" . - . - . - . - . - . - . - . + . + . + "https://portal.issn.org/resource/ISSN/$1"^^ . + "subject agnostic" . + . + . + . + "aquaculture" . + "CiteXplore" . + . + "false"^^ . + . + . + . + . + . + . + "0000156"^^ . + "^\\d{7}$"^^ . + . + . + . + "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry."^^ . + . + "environmental science" . + . + . + . + "0002902"^^ . + "eol" . + . + . + . + "pictar" . + "Rosemary Shrestha" . + . + "Cell line collections (Providers)"^^ . + . + . + "00000674"^^ . + . + . + "false"^^ . . - . - . - . - . - . - "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"^^ . - "dbmhc" . - . - "genome" . - "^\\d{7}$"^^ . - "http://n2t.net/ark:$1"^^ . - . - . - . - . - . + "http://www.orpha.net/ORDO/Orphanet_"^^ . + . + . + "false"^^ . + "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes."^^ . + . + . + . + . + . + "translational medicine" . + . + . + . + . + . + . + . + . + "Antibiotic Resistance Genes Database" . + . + "0000024"^^ . + . + . + . + "http://purl.obolibrary.org/obo/REO_$11"^^ . + "https://orcid.org/$1"^^ . + . + . + . + . + . + . + . + . + "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. "^^ . + "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."^^ . + . + "false"^^ . + . + . + "true"^^ . + "The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion."^^ . + . + . + . + . + "8668"^^ . + "bcrc" . + . + "http://immunet.cn/bdb/index.php/mimoset/"^^ . + "false"^^ . + . + "^SEQF\\d+$"^^ . + . + . + . + "^\\d+$"^^ . + . + . + _:N1531bf92c67e42119f18e5fedbef62f9 . + . + . + . + "http://purl.jp/bio/4/id/$1"^^ . + . + . + "Uberon Property" . + . + . + "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it."^^ . + "^LSM-\\d+$"^^ . + "^\\d+$"^^ . + . + "http://www.antweb.org/specimen.do?name="^^ . + . + "false"^^ . + . + "0116"^^ . + . + "^[0-9a-zA-Z]{8}$"^^ . + . + . + . + "false"^^ . + "ecocore" . + "Veterinary Nomenclature" . + . + . + "false"^^ . + . + . + "achcar11"^^ . + . + . + . + "Ensembl Glossary" . + "2.16.840.1.113883.6.88" . + . + "European Paediatric Cardiac Codes" . + . + . + . + . + "Jennifer C. Giron" . + "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid="^^ . + . + "Anne Morgat" . + . + . + . + . + . + "true"^^ . + "^S\\w+(\\.)?\\w+(\\.)?$"^^ . + "https://www.worldwildlife.org/ecoregions/"^^ . + "disorder" . + . + . + . + "false"^^ . + . + . + . + . + . + . + "obo" . + "enzyme" . + . + . + . + . + . + "^\\d+\\w?$"^^ . + "rna" . + "ICDO" . + . + . + . + . + "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . + "biology" . + . + . + "SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies."^^ . + . + . + . + "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1"^^ . + . + "protein" . + . + "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors."^^ . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + "frederique.lisacek@isb-sib.ch" . + . + "environmental science" . + "structural biology" . + "CASRAI Contributor Roles Taxonomy" . + . + . + . + "true"^^ . + "false"^^ . "false"^^ . - "Wikidata Property" . - . - . - "life science" . - "taxonomy" . - . - "cell_model_passport" . - "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name=$1"^^ . - . - . - . - . - "PELNAW"^^ . - . - . - . - . - . - . - . - . - "^PMC\\d+(\\.\\d+)?$"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q="^^ . - "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . - "wbls" . - "tcdb" . - "Symptom Ontology" . - . - . - . - "PSI-MOD" . - . - "154022"^^ . - . - . - "biology" . - . - "2639"^^ . - . - . - . - . - . - "evan@epatters.org" . - . - . - "version Dec 2019"^^ . - . - . - "An ontology for non-coding RNA, both of biological origin, and engineered."^^ . - . - . - . - "^rs\\d+$"^^ . - "unipathway.compound" . - . - . - . - . - . - . - . - . - "bioinformatics" . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$"^^ . - . - "agriculture" . - "false"^^ . - . - "Database of Macromolecular Interactions" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Conference Ontology" . - . - . - . - . - "scop.sccs" . - . - . - . - . - . - . - . - . - . - . - "AT1402"^^ . - "life science" . - . - . - . - . - . - "rnamod" . - . - . - "00005254"^^ . - . - . - . - . - "https://terminology.hl7.org/CodeSystem-v3-$1"^^ . - . - . - . - "MCDS_S_0000000001"^^ . - "http://purl.obolibrary.org/obo/LOGGERHEAD_"^^ . - . - . - . - . - . - "MatrixDB Association" . - "0002233"^^ . - . - "http://www.bindingdb.org/compact/"^^ . - "agriculture" . - . - . - "http://www.p3db.org/phosphosite.php?id=$1&ref=0"^^ . - . - "nhcdr" . - . - . - "chemistry" . - "gene" . - . - . - "Cell Line Database" . - . - "http://degradome.uniovi.es/cgi-bin/protease/"^^ . - . - . - "adcad" . - . - "A vendor of antibodies and other biologics"^^ . - . - . - "chebi" . - "0001021"^^ . - "biomedical science" . - "cell regeneration" . - "materials informatics" . - . - . - "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making."^^ . - "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId="^^ . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - "dev.ga4ghdos" . - . - "worm" . - . - "Virus' miRNA target" . - "0000509"^^ . - . - . - . - . - "CSP2005" . - "Salk Institute for Biological Studies" . - . - . - . - "Human ancestry ontology for the NHGRI GWAS Catalog"^^ . - . - . - "false"^^ . - . - "COMBINE specifications" . - . - . - "virology" . - . - . - . - . - . - "34"^^ . - . - . - . - . - . - . - "ILX" . - "http://ensembl.org/glossary/ENSGLOSSARY_$1"^^ . - "589462"^^ . - "http://purl.obolibrary.org/obo/SPD_"^^ . - "https://fungidb.org/fungidb/app/record/gene/$1"^^ . - . - . - . - "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid="^^ . - "2-s2.0-0030770923"^^ . - "thomas@luetteke-online.de" . - . - . - . - "pathogen" . - . - "DB-0174"^^ . - "interactive portal" . - . - . - . - . - "http://purl.obolibrary.org/obo/MC_$1"^^ . - . - . - . - "^\\d+$"^^ . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_anat_"^^ . - . - . - . - . - "arrayexpress" . - . - "Anne.Morgat@sib.swiss" . - . - "false"^^ . - . - . - . - . - . - "https://ror.org/$1"^^ . - . - . - . - . - . - . - "false"^^ . - "molecular biology" . - . - . - "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe."^^ . - "PDB_CHEM_ID" . - . - "longevity" . - . - "PjrpzUIAAAAJ"^^ . - ""^^ . - _:Nfbd37b7f4f0847ebb98bf2d1b7f2fd90 . - . - "PROCO (PROcess Chemistry Ontology) is a formal ontology that aims to standardly represent entities and relations among entities in the domain of process chemistry."^^ . - . - . - . - . - "KCT0008394"^^ . - . - . - . - "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^ . - "^PGS[0-9]{6}$"^^ . - "ontology" . - . - . - . - . - . - "MNXR101574"^^ . - . - . - . - "AAC"^^ . - "IPR" . - "https://meshb.nlm.nih.gov/record/ui?ui="^^ . - "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$"^^ . - "cell" . - . - "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . - . - "ontology" . - "http://ecmdb.ca/compounds/"^^ . - . - . - . - "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . - . - . - . - "022586"^^ . - . - . - . - . - . - . - "^rs\\d+$"^^ . - . - . - . - . - . - . - "https://models.physiomeproject.org/workspace/$1"^^ . - . - . - . - . - "^\\d{1,9}$"^^ . - . - "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER."^^ . - "skm" . - . - . - . - . - "false"^^ . - "true"^^ . - . - . - . - "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem="^^ . - . - . - "alzheimer's disease" . - . - . - . - "false"^^ . - "https://cropontology.org/rdf/CO_336:$1"^^ . - "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems."^^ . - . - . - "Natural Product Activity and Species Source Database" . - . - "https://biopragmatics.github.io/providers/sfam/"^^ . - "Identifiers.org Ontology"^^ . - "" . - "false"^^ . - "^\\d{7}$"^^ . - . - "^\\d+$"^^ . - "https://www.datanator.info/gene/$1"^^ . - "genome" . - . - . - . - . - "biomedical science" . - "false"^^ . - . - . - "http://www.jstor.org/stable/"^^ . - "agriculture" . - "D00123"^^ . - . - . - . - . - "AICARTRANSIMPCYCLO-CPLX"^^ . - . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/HAO_"^^ . - . - . - "ontology" . - . - "EDAM Ontology" . - "icf" . + . + . + "cas" . + "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1"^^ . + . + . + "HOSAPI0399"^^ . + "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule="^^ . + . + . + "^TCTR\\d+$"^^ . + "false"^^ . + . + . + "^\\d{7}$"^^ . + . + . + "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$"^^ . + "false"^^ . + "prediction" . + . + . + "https://icd.who.int/browse10/2019/en#/"^^ . + "help@emdatabank.org" . + "http://purl.obolibrary.org/obo/PW_$1"^^ . + "genetics" . + . + . + "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id=$1"^^ . + . + . + "http://autism.mindspec.org/GeneDetail/"^^ . + . + . + "life science" . + . + . + "life science" . + "dictybase.gene" . + . + . + "ProtoNet Cluster" . + . + . + . + "ontology" . + . + . + "https://bioregistry.io/ukprn:"^^ . + "^\\d+$"^^ . + "102l"^^ . + "false"^^ . + . + "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities."^^ . + "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem."^^ . + . + "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=$1"^^ . + . + . + . + . + "The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research."^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + "312.33"^^ . + . + . + . + "^(STUDY|FILE|DATASET)\\d+$"^^ . + . + "GenPept" . + . + "Rice Trait Dictionary in template v 5.0 - IRRI - March 2016 - Based on SES, RD, UPOV variables and on variables used by CIAT, FLAR and the GRISP Phenotyping Network variables"^^ . + . + . + . + . + . + . + "http://www.ymdb.ca/compounds/"^^ . + "ASKEM Epidemiology Prefixes" . + . + "https://molmedb.upol.cz/mol/"^^ . + . + . + . + . + "true"^^ . + "https://arxiv.org/abs/$1"^^ . + . + . + . + . + . + "^CHEMBL\\d+$"^^ . + . + . + . + . + . + "false"^^ . + "https://www.pgscatalog.org/pgs/"^^ . . - "http://purl.obolibrary.org/obo/NGBO_"^^ . - . - . - "pathguide" . - . - . - . - . - . - . - "vmhmetabolite" . - . - "DeBiO" . - "phenotype" . - . - . - "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information."^^ . - . - . - "CYP2A6"^^ . - "PubChem Classification" . - . - . - . - "0000121"^^ . - . - . - . - . - "false"^^ . - . - "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records."^^ . - . - . - "molecular microbiology" . - . - . - "genetics" . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]"^^ . - "^AC[0-9]{8}$"^^ . - "miriam"^^ . - . - . - "https://github.com/prefixcommons/biocontext" . - . - . - . - "cmo" . - "Pearl millet ontology" . - "Search Tool for Interactions of Chemicals" . - "obo" . - . - "RXCUI" . - . - . - "false"^^ . - . - "false"^^ . - "Reference"^^ . - . - . - "sequence" . - . - . - . - . - . - "nucleotide" . - . - . - . - "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1"^^ . - "1458400"^^ . - . - . - . - . - . - "^\\w+(\\-|\\.|\\w)*$"^^ . - . - . - . - . + "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in 363 animal species (other than human and mouse and rats and zebrafish, which have their own resources)."^^ . + "dlxb" . + . + . + . + "agriculture" . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "ontology" . + . + . + . + . + . + "https://cropontology.org/rdf/CO_334:"^^ . + "bioRxiv" . + "knowledge and information systems" . + . + "This collection contains various brain atlases from the Allen Institute." . + "gnps.task" . + . + . + . + . + . + . + "whimar@ohsu.edu" . + "https://aopwiki.org/stressors/"^^ . + "CQG5"^^ . + "ae8c77fe-e6c8-44d5-8265-4a38c637bbef"^^ . + "ndex" . + . + . + . + . + . + "violinnet" . + "^\\d+$"^^ . + . + "MU9_3181"^^ . + "http://pax-db.org/#!protein/"^^ . + "0000001"^^ . + . + . + . + . + . + . + . + "https://e-cyanobacterium.org/models/model/$1"^^ . + . + . + "E-cyanobacterium entity" . + . + . + . + "botany" . + . + . + . + "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"^^ . + . + . + . + . + . + "KEGG_DGROUP" . . - "glytoucan" . - . - . - . - . - . - . - "ChEBI Data Sources" . - "true"^^ . - . - "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$"^^ . - "insdc.cds" . - . - . - "https://www.confident-conference.org/index.php/Event_Series:"^^ . - . - . - "https://omia.org/OMIA"^^ . - "subject agnostic" . - "Peer Bork" . - . - . - . - . - . - "false"^^ . - _:N4ddba5cc6d3848468da76008f7a33671 . - "https://stemcells.nindsgenetics.org?line="^^ . - . - "false"^^ . - "ontology" . - . - . - . - . - "life science" . - . - . - "sequence" . - . - "biochemistry" . - "Maize gross anatomy"^^ . - "Petra Fey" . - . - . - "false"^^ . - . - "obo" . - . - "life science" . - "obo" . - "Proteomic Data Commons" . - . - "DataNode"^^ . - . - "protein" . - "fr" . - . - . - "Documentation of the Phenoscape Curation Workflow"^^ . - "fly" . - . - . - . - . - "^[A-Z0-9]+$"^^ . - "cell lines" . - . - . - "http://func.mshri.on.ca/fly/genes/list_functional_scores/"^^ . - . - "The RNA Modification Database" . - "false"^^ . - "scr" . - . - . - . - "c"^^ . - . - "myco.smeg" . - . - . - "chemistry" . - . - "false"^^ . - "Conferences in EasyChair"^^ . - "Common Bean ontology" . - . - . - . - "Elizabeth Arnaud" . - . - . - . - . - . - "civic.vgid" . - . - . - . - . - . - . - "^FOOD\\d+$"^^ . - . - "MESHC" . - . - "developmental biology" . - "http://purl.org/spar/biro/$1"^^ . - . - . - "baeverma@jcvi.org" . - . - . - "^\\w+$"^^ . - . - "VEuPathDB ontology" . - . - . - . - . - . - . - . - . - "NeuroVault Image" . - . - . - . - . - "dna" . - . - "false"^^ . - . - . - "https://bioregistry.io/ipi:"^^ . - "PXD000500"^^ . - "rgd.qtl" . - . - . - . - "^\\d+$"^^ . - . - "^(MAM\\d{5}\\w)|(MAR\\d{5})$"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_$1"^^ . - . - . - "http://purl.obolibrary.org/obo/EHDAA_"^^ . - . - "cgrove@caltech.edu" . - . - "unique identifiers" . - "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1"^^ . - . - . - . - . - "sgd" . - . - "beta cell" . - . - . - "dg.4dfc" . -_:N60d1d3e7c3a04448a8f402e49be1dc65 "vlee@ebi.ac.uk" . - . - . - "5601141"^^ . - . - "https://pubchem.ncbi.nlm.nih.gov/classification/#hid="^^ . - "strain" . - "Zoë May Pendlington" . - . - . - . - . - "gene" . - "0000019"^^ . - "nddf" . - . - "Gene Ontology Causal Assembly Model" . - "chemical biology" . - . -_:Ndfe615d02a6241f0848428d135ebbbd9 "rafael.goncalves@stanford.edu" . - . -_:N5b264322e16445358ec3793e74d2c953 "Ramesh Verna" . - "http://www.onto-med.de/ontologies/gfo.owl#"^^ . - . - . - . - "false"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1"^^ . - . -_:Nabf1e8c34e584cfa90b48e1410e90596 "J.Bard@ed.ac.uk" . - "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene."^^ . - . - . - . - "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure"^^ . - . - "https://www.kegg.jp/entry/$1"^^ . - "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification."^^ . - . - "life science" . - . - . - "bernd.mueller@zbmed.de" . - "^\\d{7}$"^^ . - "General Multilingual Environmental Thesaurus" . - . - "population genetics" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Lucas Leclere" . - "HMDB" . - "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - "false"^^ . - "genetics" . - . - "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources."^^ . - "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1"^^ . - . - "aaeA"^^ . - . - . - . - "genomics" . - "European Mouse Mutant Archive" . - "obo" . - . - . - . - . - "Luana Licata" . - "false"^^ . - "53d583d8-40c6-40e1-9296-23f821cd77a5"^^ . - . - "Plant Transcription Factor Database" . - . - "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information."^^ . - "http://purl.obolibrary.org/obo/OGMS_"^^ . - . - "plant" . -_:Nd77a505b50a148869c0fc766eb978e4c "edd@usefulinc.com" . - . - "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea."^^ . - . - . - "small molecule" . - "false"^^ . - . - . - . - "false"^^ . - . - "NLXORG covers organisms."^^ . - . - "GLAndersen@lbl.gov" . - "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines"^^ . - . - . - . - "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations."^^ . - . - . - . - . - "human health" . - "lars.holm.nielsen@cern.ch" . - . - . - . - . - . - . - . - "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)"^^ . - "life science" . - . - "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1"^^ . - "false"^^ . - . - . - . - . - "anatomy" . - "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip."^^ . - . - "1664"^^ . - . - "https://www-is.biotoul.fr/scripts/ficheIS.php?name="^^ . - "publons.publication" . - . - . - . - "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object="^^ . - . - "https://bioregistry.io/reo:"^^ . - "Elvira Mitraka" . - "KEGG Environ" . - . - . - . - "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea."^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - "0000010"^^ . - . - . - "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources."^^ . - . - "^\\d{7}$"^^ . - "true"^^ . - . - "KEGG Glycan" . - . - . - "2022.07.08.499378"^^ . - . - . - . - . - . - . - "biofactoid" . - . - . - . - "life science" . - . - "1"^^ . - "1251"^^ . - . - "antibodies" . - . - . - . - "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - . - "haendel@ohsu.edu" . - . - . - . - "^\\d{7}$"^^ . - . - . - "gene" . - "https://bioregistry.io/bmrb:"^^ . - . - . - . - . - "Arctic Data Center Academic Disciplines Ontology" . - "0000780"^^ . - . - . - . - . - . - "Bjoern Peters" . - . - . - . - "PubMed" . - "http://purl.obolibrary.org/obo/XCO_"^^ . - . - . - . - . - "false"^^ . - "life science" . - . - . - . - "^(C|D)\\d{6,9}$"^^ . - . - "epidemiology" . - "^\\d{7}$"^^ . - . - . - . - . - "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017."^^ . - . - . - . - "http://purl.obolibrary.org/obo/RXNO_"^^ . - "Unimod is a public domain database created to provide a community supported, comprehensive database of protein modifications for mass spectrometry applications. That is, accurate and verifiable values, derived from elemental compositions, for the mass differences introduced by all types of natural and artificial modifications. Other important information includes any mass change, (neutral loss), that occurs during MS/MS analysis, and site specificity, (which residues are susceptible to modification and any constraints on the position of the modification within the protein or peptide)."^^ . - . - "mirEX" . - . - "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced."^^ . - . - . - "http://www.w3.org/2006/time#"^^ . - . - . - "life science" . - . - "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN="^^ . - . - "Dublin Core Metadata Initiative Terms" . - . - . - . - . - "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" . - . - "FBcv" . - . - . - "dna" . - "false"^^ . - "taxonomy" . - . - "Aromatic"^^ . - . - . - "https://bioregistry.io/leafsnap:"^^ . - . - "614"^^ . - "Ontology of Biological Attributes" . - . - . - . - . - . - "https://biopragmatics.github.io/providers/dhba/$1"^^ . - . - "https://w3id.org/nfdi4cat/voc4cat_$1"^^ . - . - "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands."^^ . - "millipore" . - "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment."^^ . - "http://purl.obolibrary.org/obo/OAE_"^^ . - . - . - "http://repository.topdownproteomics.org/proteoforms/$1"^^ . - "genomics" . - . - . - "false"^^ . - "Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted."^^ . - . - . - . - "A formal represention for drug-drug interactions knowledge."^^ . - . - . - . - . - "https://www.abmgood.com/search?query="^^ . - . - "ontology" . - . - "genome" . - . - . - "agriculture" . - . - . - . - "Jianjiong Gao" . - . - "subject agnostic" . - "http://sabiork.h-its.org/newSearch?q="^^ . - . - . - "Sanger Cell Model Passports" . - . - "http://purl.obolibrary.org/obo/RBO_"^^ . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/TTO_"^^ . - . - "phenomics" . - "vita" . - "life science" . - . - "Pantelis Topalis" . - "http://www.innatedb.ca/getGeneCard.do?id=$1"^^ . - "mdm" . + "false"^^ . + . + "^rs\\d+$"^^ . + . + "^\\d{8}$"^^ . + "http://purl.obolibrary.org/obo/EUPATH_$1"^^ . + . + . + . + "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + . + . + . + . + "http://ecoportal.lifewatch.eu/ontologies/$1" . + "34"^^ . + . + . + . + "CHEMBL465070"^^ . + . + . + . + "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId="^^ . + . + . + "International Histocompatibility Workshop cell lines" . + "GFAM" . + . + "UniRef" . + . + "MEDRA" . + "GPIb_IX_V"^^ . . - "drug discovery" . - "00000105"^^ . - . - "obo" . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "social science" . - . - . - "preprints" . - . - . - . - "http://purl.obolibrary.org/obo/MAO_"^^ . - "https://medical-data-models.org/forms/"^^ . - . - . - "false"^^ . - "supply" . - . - . - . - . - "chemistry" . - . - "Vertebrate Homologous Organ Group Ontology" . - . - . - . - "ThermoFisher is a life sciences supply vendor."^^ . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - "biomedical science" . - . - . - . - "1047874"^^ . - "https://bbp.epfl.ch/nexus/web/studios/public/"^^ . - "http://nava.liacs.nl/cgi-bin/nava.py?id=$1"^^ . - . - "PR000001"^^ . - . - . - "string" . - . - . - "population genetics" . - . - . - . - . - "gene" . - "http://dictybase.org/gene/"^^ . - . - "http://cgsc.biology.yale.edu/Site.php?ID="^^ . - . - "computational biology" . - . - "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information."^^ . - . - "cells" . - "mmsl" . - "false"^^ . - . - "huang@southalabama.edu" . - . - "Cell line databases/resources"^^ . - . - . - "GrainGenes" . - "http://purl.obolibrary.org/obo/SEPIO_"^^ . - . - "Cryo Electron Microscopy ontology" . - . - "Electron Microscopy Public Image Archive" . - "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE)."^^ . - . - . - . - . - . - "A vocabulary of taxonomic ranks (species, family, phylum, etc)"^^ . - "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_"^^ . - . - "Uber-anatomy ontology" . - . - . - . - . - . - "rapdb.transcript" . - "anatomy" . - . - "United States Patent and Trademark Office" . - . - . - "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn="^^ . - . - . - . - . - "drugbank.category" . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "genome" . - "mgiglio@som.umaryland.edu" . - "^(\\w){3}$"^^ . - "derivatives%2Fthiocyclam%20hydrochloride"^^ . - "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1"^^ . - . - . - . - "hybrid" . - . - . - "false"^^ . - . - . - "pubmed"^^ . - . - . - . - "FuncBase Human" . - . - "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles."^^ . - . - "mapping_justification"^^ . - "registry" . - . - "hescriva@obs-banyuls.fr" . - . - "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."^^ . - "Daniel Sonenshine" . - "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains."^^ . - . - . - "ontology" . - "combine.specifications" . - "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid="^^ . - . - . - "biology" . - . - "40000617"^^ . - . - . - . - "interaction" . - . - "cdao" . - . - . - "false"^^ . - "false"^^ . - "ND50028"^^ . - . - . - "0000062"^^ . - "An ontology for mouse anatomy covering embryonic development and postnatal stages."^^ . - . - . - "Integrated Resource for Domestic Dog" . - . - "273"^^ . - . - . - . - "0000010"^^ . - "^[SCTAGMNU]\\d+$"^^ . - . - "arachnoserver" . - . - "pseudogene" . - . - "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"^^ . - . - "^[A-Z0-9]{6,7}$"^^ . - . - . - . - "life science" . - . - . - . - . - . - "medicinal chemistry" . - "recombinant inbred rat" . - "http://bigg.ucsd.edu/models/universal/reactions/"^^ . - . - . - . - "RiceNetDB miRNA" . - "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific."^^ . - . - . - "reto" . - "^\\d+$"^^ . - . - . - "database" . - "InterPro" . - . - . - . - "biology" . - . - . - . - "Carlos Oscar S. Sorzano" . - "http://purl.obolibrary.org/obo/VariO_"^^ . - . - . - . - . - "ontology" . - "ontology" . - "false"^^ . - "http://purl.obolibrary.org/obo/CHIRO_"^^ . - . - "Beta Cell Genomics Ontology" . - "false"^^ . - . - "Trish Whetzel" . - "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"^^ . - . - . - . - "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match."^^ . - "https://w3id.org/oc/oci/"^^ . - . - . - . - . - "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"^^ . - "https://w3id.org/BCI-ontology#"^^ . - "MMs00000001"^^ . - "inaturalist.taxon" . - . - . - "false"^^ . - "rgd.strain" . - . - . - . - . - "life science" . - "obo" . - . - . - "false"^^ . - . - "^\\w+(\\_)?\\d+(\\.\\d+)?$"^^ . - "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites."^^ . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . - . - . - "enzymology" . - . - . - "lucas.leclere@obs-vlfr.fr" . - "0000005"^^ . - . - . - . - . - . - "^SKIP\\d+$"^^ . - "^\\d+$"^^ . - . - . - . - "MIPF0000002"^^ . - . - "life science" . - . - . - . - . - "100810"^^ . - "NCBI Taxonomy" . - . - . - . - . - "false"^^ . - "mgnify.proj" . - "Microarray experimental conditions" . - "false"^^ . - . - "Bill Hogan" . - "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1"^^ . - . - "botany" . - . - "ontology" . - "chemistry" . - . - . - "genome" . - . - . + . + . + "https://www.flymine.org/come/entry?gn="^^ . + "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" . + . + "^[0-9]+$"^^ . + "^CAL\\d{7}$"^^ . + "Data Catalog" . + "^DB\\d{5}$"^^ . . - . - "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information."^^ . - "http://purl.obolibrary.org/obo/RS_$1"^^ . - "^\\d+$"^^ . - "http://sideeffects.embl.de/se/$1"^^ . - . - . - "subject agnostic" . - . - . - . - . - "dna" . - . - "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid="^^ . - "false"^^ . - "http://purl.obolibrary.org/obo/COB_$1"^^ . - . - "genomics" . - . - "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md"^^ . - . - . - "life science" . - "https://licebase.org/?q=$1"^^ . - . - . - . - "Cell line databases/resources"^^ . - . - . - . - . - "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names."^^ . - . - . - . - . - "life science" . - . - . - . - . - . - "molecular chemistry" . - . - . - . - "vbase2" . - . - "EntrezGene" . - "https://bio.tools/"^^ . - "^[0-9X\\-]+$"^^ . - "gene" . - . - . - . - . - "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."^^ . - . - . - . - . - "http://dicom.nema.org/resources/ontology/DCM/$1"^^ . - . - . - . - . - . - "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/$1"^^ . - "pathways" . - . - . - "false"^^ . - "https://www.uniprot.org/uniref/$1"^^ . - . - . - . - . - . - "P29894"^^ . - . - . - "vsao" . - . - "gaoj@mskcc.org" . - . - . - . - "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" . - . - . - . - . - . - . - . - "co_357" . - . - "false"^^ . - "handle" . - . - . - . - . - . - . - . - . - . - . - "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."^^ . + "false"^^ . + "protein" . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "The human receptor families involved in signaling (with the exception of channels) are presented in the Human Plasma Membrane Receptome database."^^ . + . + "https://www.aapc.com/codes/cpt-codes/$1"^^ . + . + . + . + "Yeast Searching for Transcriptional Regulators and Consensus Tracking" . + "false"^^ . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "cnrs" . + . + . + "biology" . + . + . + . + . + "EB0170"^^ . + . + "YMDB00001"^^ . + "Silvio C.E. Tosatto" . + . + . + "https://e-cyanobacterium.org/bcs/rule/"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ONE_"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . "Q0VCA6"^^ . - . - "SYMP" . - . - . - . - . - "^[\\w\\-:,]{3,64}$"^^ . - . - "1001"^^ . - . - . - . - . - . - . - . - . - "0011140"^^ . - . - . - . - . - "The reviewer of a prefix" . - . - "ontology" . - . - "https://www.rhea-db.org/rhea/"^^ . - . - "false"^^ . - . - "hsa-mir-200a"^^ . - "isrctn" . - "vhog" . - . - "https://bioregistry.io/$1:$2" . - . - . - . - . - "Discourse Elements Ontology" . - . - . - . - . - . - . - . - "chromosome" . - "00050"^^ . - . - "An ontology to describe entities related to prescription of drugs"^^ . - . - "gene" . - . - . - . - . - "immunology" . - . - "https://repeatsdb.org/structure/$1"^^ . - . - . - . - "http://arabidopsis.org/servlets/TairObject?accession=AASequence:"^^ . - . - "life science" . - . - . - . - "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/"^^ . - "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus="^^ . - "http://www.fairsharing.org/ontology/subject/SRAO_$1"^^ . - "bioinformatics" . - "System Science of Biological Dynamics project" . - "drug repositioning" . - . - . - "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42)."^^ . - . - . - . - "false"^^ . - . - "scientist" . - . - . - "software engineering" . - "https://bioregistry.io/mesh.2013:"^^ . - . - "http://purl.obolibrary.org/obo/SIBO_$1"^^ . - "http://purl.obolibrary.org/obo/SO_"^^ . - . - "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1"^^ . - "https://bioregistry.io/metaregistry/cellosaurus/"^^ . - "Idan Gabdank" . - "life science" . - . - "http://www.lipidmaps.org/data/LMSDRecord.php?LMID="^^ . - "molmovdb" . - "AP011135"^^ . - . - . - "Rat Genome Database" . - . - . - "life science" . - . - . - . - . - . - "glycomics" . - . - . - . - . - "protein" . - . - "https://tools.ietf.org/rfc/rfc$1"^^ . - . - . - "small molecule" . - . - "https://bioregistry.io/resolve/github/pull/$1"^^ . - . - "npo" . - . - "gro" . - . - "http://www.pharmgkb.org/gene/"^^ . - "10595"^^ . - . - "^T3D\\d+$"^^ . - "European Genome-phenome Archive Study" . - . - . - . - . - . - . - "false"^^ . - . - . - "SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library."^^ . - . - . - . - "false"^^ . - . - . - "COVID-19 Surveillance Ontology" . - . - "https://gen3.theanvil.io/ga4gh/drs/v1/objects/"^^ . - "false"^^ . - "^[0-9][A-Za-z0-9]{3}$"^^ . - . + . + . + . + . + . + . + "https://gitlab.com/$1"^^ . + . + . + . + "combine.specifications" . + . + . + . . - . - "false"^^ . - . - . - . - "ontology" . - "true"^^ . - "http://www.geneontology.org/formats/oboInOwl#"^^ . - "anatomy" . - . - . - "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . - "^\\d+$"^^ . - "ARP-1513"^^ . - . - . - "ontology" . - . - . - . - "RCV000033555.3"^^ . - . - . - "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules."^^ . - "ogms" . - "NUI" . - "6017782"^^ . - . -_:N4e049b627b3a4edaa7e72a9425ccc457 "j.bard@ed.ac.uk" . - "anatomy" . - "19757"^^ . - . - . - . - "https://jjj.bio.vu.nl/models/$1"^^ . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - "https://www.ebi.ac.uk/miriam/main/resources/"^^ . - "http://ddinter.scbdd.com/ddinter/interact/$1"^^ . - "false"^^ . - . - "00000022"^^ . - "SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases."^^ . - "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . - . - . - "genomics" . - . - . - . - . - "citlalli.mejiaalmonte@gmail.com" . - . - "drugbank.target" . - "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."^^ . - . - . - . - . - "sheepqtldb" . - "https://www.jax.org/strain/"^^ . - "false"^^ . - "^\\d+$"^^ . - "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract."^^ . - "biology" . - . - "http://scop.berkeley.edu/sid="^^ . - . - "A*01:01:01:01"^^ . - . - . - . - . - . - . - . - . - "phylogenetics" . - . - . - "life science" . - . - "https://www.ncbi.nlm.nih.gov/research/cog/pathway/"^^ . - "obo" . - . - "samuel.friedman@cammlab.org" . - . - . - . - . - . - . - . - "Cellosaurus Publication" . - . - . - "^\\d+$"^^ . - "Pseudomonas Genome Database" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/FBSP_$1"^^ . - . - . - . - "scopus" . - . - . - . - . - "E-cyanobacterium rule" . - "Inge Jonassen" . - . - . - . - . - "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science."^^ . - "https://www.emsl.pnnl.gov/project/$1"^^ . - . - . - "false"^^ . - "https://www.flymine.org/flymine/report/ChromosomeBand/$1"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "clinvar.submitter" . - . - "mutant" . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - "false"^^ . - "MMP3888430"^^ . - . - . - . - . - . - "Arabidopsis Small RNA Project" . - "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - "https://mmp.sfb.uit.no/databases/marcat/#/records/"^^ . - "^[0-9]+$"^^ . - . - . - . - . - "https://biopragmatics.github.io/providers/uniprot.ptm/$1"^^ . - . - . - . - "dcat" . - "https://viperdb.org/Info_Page.php?VDB="^^ . - . - "gene expression" . - "FuncBase Yeast" . - . - _:N5a3da52228154c328228750974332655 . - . - "obo" . - "http://ciliate.org/index.php/feature/details/$1"^^ . - . - . - . - . - "^\\d+$"^^ . - . - . - . - "NITE Biological Resource Center" . - . - . + "http://edamontology.org/format_"^^ . + "protein" . + . + . + . + "^\\d+$"^^ . + "The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species."^^ . + "linkml" . + . + _:N3aa07d85853c46a082ac4d2fe6ca36d9 . + "biosimulators" . + . + "Variation Modelling Collaboration" . + . + . + . + "https://gudmap.org/id/$1"^^ . + "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid=$1"^^ . + . + . + . + . + . + "Experimental condition ontology" . + "medlineplus" . + . + . + . + . + . + . + "licebase" . + . + . + . + . + . + . + "PGOHUM00000289843"^^ . + "1058367"^^ . + . + "https://cropontology.org/rdf/CO_331:"^^ . + . + . + . + "^SIGNOR-\\d+$"^^ . + . + "0000519"^^ . + . + . + . + "https://scicrunch.org/resolver/RRID:AGSC_"^^ . + . + . + . + "alpha.tom.kodamullil@scai.fraunhofer.de" . + "David Linke" . + "ontology" . + "false"^^ . + "Nicholas Furnham" . + . + . + . + "false"^^ . + . + "true"^^ . + "structure" . + . + "cellbank.australia" . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . . - . - . - . - . - . - . - "File inside StoreDB"^^ . - . - . - "http://www.hgmd.cf.ac.uk/ac/gene.php?gene="^^ . - "Andrew G. McArthur" . - . - . - . - "https://cstr.cn/$1"^^ . - . - . - "^\\w+$"^^ . - "ontology" . - . - . - . - "developmental biology" . - . - . - . - . - . - . - . - "ontology" . - . - "true"^^ . - . - . - "bcio" . - . - "0000060"^^ . - "^\\d{8}$"^^ . - . - . - . - "1178"^^ . - "F45.21"^^ . - . - . - . - "mutation" . - . - . - "authorList"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1"^^ . - "Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) in BioContext." . - "MAO:0000061"^^ . - "https://drs.microbiomedata.org/objects/"^^ . - . - "http://purl.obolibrary.org/obo/FBbt_$1"^^ . - "bioinformatics" . - "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry."^^ . - "MicroScope" . - "functional genomics" . - . - . - . - . - "This system submits an implementation plan to the Minister of Health, Labor and Welfare for clinical research conducted at medical institutions, etc. based on the provisions of the 'Clinical Research Act' and the 'Act on Ensuring Safety of Regenerative Medicine, etc.' It is a system for performing notification procedures such as In addition, based on the clinical research practice standards stipulated in the same law, we disclose information that the World Health Organization (WHO) requires to be disclosed, information that ensures the transparency of the research process, and information that contributes to the selection of participation in clinical research by the public. (translated from website)"^^ . - . - . - . - "splash" . - . - "Maciej.Antczak@cs.put.poznan.pl" . - . - "http://xmlns.com/foaf/0.1/"^^ . - . - . - "biomedical science" . - . - . - . - . - . - "genome" . - . - "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term="^^ . - . - "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"^^ . - . - . - "Integrative and Conjugative Element Ontology" . - "false"^^ . - . - . - . -_:N274e55f6ea7440dfba8452e0d6b6d9dd "helpdesk@cropontology-curationtool.org" . - "antibody" . - . - . - . - . - . - "false"^^ . - "opb" . - . - . - "ontology" . - . + . + . + . + . + . + . + . + . + . + "ontology" . + "fungidb" . + . + . + . + "https://rnajunction.ncifcrf.gov/JunctionPage.php?jid="^^ . +_:Nc2e3ba42f6a046898fa70b628a52ec6c "sschurer@med.miami.edu" . + . + "^\\d+$"^^ . + . + "https://viperdb.org/Info_Page.php?VDB=$1"^^ . + "http://www.genome.jp/dbget-bin/www_bget?aaindex:"^^ . + . + . + . + . + . + . + . + "https://proteinensemble.org/"^^ . + . + . + . + . + . + . + "Maize gross anatomy" . + "veterinary medicine" . + "mcarthua@mcmaster.ca" . + "pharmacodb.dataset" . + "1122888"^^ . + . + "ontology" . +_:N302b31c103cb46c785d4f40b23c155e9 "helpdesk@cropontology-curationtool.org" . + "false"^^ . + . + . + . + . + . + "http://plugins.biogps.org/cgi-bin/wp.cgi?id="^^ . + "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1"^^ . + "false"^^ . + "omim" . + . + "intact" . + . + "ontology" . + "false"^^ . + . + . + "SNR17A"^^ . + "Dictyostelium discoideum anatomy" . + "0000029"^^ . + "small molecule" . + "https://www.novusbio.com/products/"^^ . + . + "TransportDB" . + "Unimod protein modification database for mass spectrometry" . + "wikigenes" . + . + . + "Wikipedia" . + . + "aop.stressor" . + . + . + . + "genome" . + "false"^^ . + . + "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN="^^ . + . + . + . + . + . + . . - . - . - "http://purl.obolibrary.org/obo/TO_$1"^^ . - . - . - "chemical" . - "crop2ml" . - "classification-model"^^ . - "ArchDB" . - "life science" . - "obo" . - . - . - "nutritional science" . - "^CHEMBL\\d+$"^^ . - "The Food Ontology" . - . - "false"^^ . - "13"^^ . - . - . - . - "https://www.ebi.ac.uk/gxa/experiments/"^^ . - . - "Identifier for an entity in open tree of life"^^ . - . - . - . - . - . - . -_:N7601a7cf89f14dbb930c2ae48240994c "bgee@isb-sib.ch" . - "Input data and analysis results for the paper \"Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."^^ . - . - . - . - . - . - . - . - . - "preclinical studies" . - "https://nmrshiftdb.nmr.uni-koeln.de/molecule/$1"^^ . - . - . - . - . - . - "Genomics of Drug Sensitivity in Cancer" . - "reagent" . - "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id="^^ . - "https://www.inaturalist.org/users/$1"^^ . - "UniProt Isoform" . - . - . - "protein" . - . - . - . - . - "KEGG Reaction" . - . - . - "^\\d{7}$"^^ . - . - "https://purl.uniprot.org/uniprot/$1"^^ . - . - . - "true"^^ . - . - . - . - "gear" . - . - . - "http://avis.princeton.edu/pixie/viewgraph.php?graphID="^^ . - "Food Interactions with Drugs Evidence Ontology" . - "COG_Cluster" . - . - . - . - . - "false"^^ . - . - . - . - "International Medical Device Regulators Forum" . - "https://cropontology.org/rdf/CO_323:$1"^^ . - "Joshua Orvis" . - . - "http://purl.obolibrary.org/obo/OHMI_"^^ . - . - "Blue Brain Project Topological sampling Knowledge Graph" . - . - . - "^\\d+$"^^ . - "genome" . - . - . - . - . - "false"^^ . - . - "^\\d+$"^^ . - . - "protein" . - . - "false"^^ . - . - "true"^^ . - "^\\d{5}$"^^ . - _:N06dae87cab9f4b78b60ddc858172f693 . - "Quality"^^ . - . - "0000252"^^ . - . - "Ontology of Adverse Events" . - . - "false"^^ . - . - . - . - . - . - "ontology" . - . - "https://repo.napdi.org/study/$1"^^ . - "^\\w+(\\-)?\\w+(\\-)?\\w+$"^^ . - "https://bioregistry.io/hovergen:"^^ . - . - "^\\d{7}$"^^ . - "aao" . - "sep" . - . - . - . - "false"^^ . - "subject agnostic" . - . - . - . - "false"^^ . - . - "life science" . - . - "genomics" . - . - . - . - . - "life science" . - "ontology" . - . - . - . - . - . - "false"^^ . - . - . - . - _:N040aa6c5b3974c7da6cda302541b8bb3 . - "NLXCELL conatins cell types with a focus on neuron types."^^ . - . -_:N6afd81d0b18c4d788763e7e1cf916125 "info@who.int" . - . - "dna" . - . - . - . - . - "protein" . - . - "false"^^ . - . - . - . - . - "false"^^ . - "Oat ontology" . - . - . - . - "quantitative genetics" . - . - "International Genome Sample Resource" . - . - "http://nbn-resolving.org/resolver?identifier=$1&verb=redirect"^^ . - . - "translational medicine" . - "^\\d{3}$"^^ . - "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources"^^ . - . - "http://purl.obolibrary.org/obo/DRON_"^^ . - . - . - . - . - . - . - "bitterdb.rec" . - . - . - . - . - "false"^^ . - . - "scop.sid" . - . -_:N0e778a949ea94c0da609abeb109263f3 "kninomiya-mope@g.ecc.u-tokyo.ac.jp" . - . - . - "01625"^^ . - . - "developmental biology" . - . - . - . - "false"^^ . - . - . - . - . - . - . - "Ontology Concept Identifiers" . - "biro" . - . - "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"^^ . - . - "Fission Yeast Experimental Conditions Ontology" . - . - . - . - . - "AY321118"^^ . - . - "true"^^ . - . - . - "dna" . - . - "nrfc" . - "http://www.wikigenes.org/e/gene/e/$1.html"^^ . - . - "http://purl.obolibrary.org/obo/WBPhenotype_"^^ . - "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases."^^ . - "Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions."^^ . - "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association"^^ . - . - . - . - "false"^^ . - . - . - . - . - . - "Ontology Lookup Service" . - . - . - . - "^\\d{7}$"^^ . - "WikiPathways" . - . - . - . - "insdc.sra" . - . - "EcoLexicon" . - . - . - . - . - . - . - "false"^^ . - "WGS-95-1333"^^ . - . - "vcell" . - . - . - . - "yeastintron" . - "STOREDB at University of Cambridge" . - "subject agnostic" . - . - "https://purl.dataone.org/odo/MOSAIC_$1"^^ . - . - . - . - . - "bio.tools" . - . - "animal breeding" . - "Ensembl Plants" . - . - "^ECMDB\\d+$"^^ . - "genetics" . - . - . - . - . - "ASRP1423"^^ . - . - "^\\d+$"^^ . - "repeatsdb.structure" . - "false"^^ . - . - "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"^^ . - . - "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1"^^ . - . - . - . - . - . - . - . - . - "lrg" . - . - "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1"^^ . - "genomics" . - . - "GPM32310002988"^^ . - "gthayman@mcw.edu" . - . - . - "false"^^ . - "^[A-Za-z0-9]+$"^^ . - "000140" . - . - "^[A-Z_a-z]+$"^^ . - . - . - . - . - "^BAMSC\\d+$"^^ . - "trichdb" . - . - . - . - "https://abrc.osu.edu/stocks/number/SALK_$1"^^ . - . - . - "UniProt Chain" . - . - "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1"^^ . - "biology" . - "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$"^^ . - . - "life science" . - "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC="^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/CRO_$1"^^ . - "https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary"^^ . - "jorvis@gmail.com" . - . - . - . - "Saccharomyces genome database pathways" . - . - . - "foodex2" . - . - "National Drug Code" . - . - . - . - "Banana ontology" . - . - . - . - . - "http://purl.obolibrary.org/obo/SEP_"^^ . - "false"^^ . - "Plant Environment Ontology" . - . - . - "co_346" . - . - . - "https://w3id.org/oc/corpus/"^^ . - . - "bcrj" . - . - . - . - "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder."^^ . - "Malaria Ontology" . - "http://www.informatics.jax.org/accession/MGI:"^^ . - "agriculture" . - . - . - . - . - "plant" . - . - "1.1.1.1"^^ . - "http://www.cathdb.info/cathnode/"^^ . - . - "gitlab" . - . - . - . - . - "https://www.abcam.com/$1.html"^^ . - . - . - "HGNC gene family" . - . - "^\\d{7}$"^^ . - . - "Plant Ontology" . - . - . - . - "https://github.com/biolink/biolink-model" . - . - "http://www.whocc.no/atc_ddd_index/?code=$1"^^ . - . - "genome" . - . - . - . + "National Experimental Cell Resource Sharing Platform" . + "obo" . + . + . + "RDF Schema" . + . + "Yongqun Oliver He" . + "ribocenter" . . - . - . - . - . - "Cell Signaling Technology Antibody" . - . - . - "false"^^ . - "life science" . - "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1"^^ . - . - . - . - . - "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 3. This was replaced in 2013 by version 4."^^ . - "false"^^ . - . - . - "OncoTree" . - "^\\d{7}$"^^ . - . - "https://w3id.org/mixs/"^^ . - . - "botany" . - "ontology" . - . - "true"^^ . - "NCI Drug Dictionary ID" . - "pepbank" . - . - . - . - "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/"^^ . - "^\\d+$"^^ . - . - "Vertebrate skeletal anatomy ontology."^^ . - . - . - . - "anatomy" . - "Biological Imaging Methods Ontology" . - "taxonomy" . - . - . - . - . - . - "1968"^^ . - "gold.meta" . - "classyfire" . - . - . - "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . - "false"^^ . - "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID="^^ . - . - . - "959"^^ . - "1398574"^^ . - "false"^^ . - "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more."^^ . - . - . - . - . - "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert="^^ . - . - . - . - "false"^^ . - "https://giardiadb.org/giardiadb/app/record/gene/"^^ . - "classification" . - "faseb list" . - . - "^\\w+$"^^ . - . - . - . - . - . - . - "oharb@pcbi.upenn.edu" . - "https://rfam.xfam.org/family/$1"^^ . - "ecology" . - . - . - . - . - "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query="^^ . - . - . - . - . - . - _:N0c4133fa3abd40e2babb1af40e7ea11a . - . - . - . - . - . - "https://idr.openmicroscopy.org/search/?query=Name:idr$1"^^ . - . - . - . - . - . - . - . - . - "anatomy" . - . - "repository" . - . - . - . - . - . - "Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]"^^ . - "https://www.uniprot.org/database/"^^ . - "germplasma" . - . - "true"^^ . - "ontology and terminology" . - "botany" . - . - . - "Mihail Anton" . - . - . - . - "http://purl.obolibrary.org/obo/PW_"^^ . - . - "28789"^^ . - . - . - "The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches)."^^ . - "false"^^ . - "ontology" . - "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts."^^ . - "3hB06"^^ . - . - "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."^^ . - . - "protein" . - . - . - . - . - . - . - . - . - . - "UPVAR" . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "Alexander Diehl" . - . - . - "obo" . - "https://www.iedb.org/reference/"^^ . - . - . - "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection is species-independent."^^ . - . - . - "VCell Published Models" . - . - . - . - "201022999"^^ . - . - "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013."^^ . - "https://bioschemas.org/profiles/"^^ . - "9606117"^^ . - . - . - . - "Jacqueline.Campbell@usda.gov" . - . - . - "http://www.w3.org/2008/05/skos-xl#$1"^^ . - . - "patrice.buche@inrae.fr" . - "false"^^ . - . - "anatomy" . - "https://registry.identifiers.org/registry?query=MIR:"^^ . - "GlyTouCan" . - "gfo" . - "1058367"^^ . - "false"^^ . - "tahe" . - "false"^^ . - "TA14985"^^ . - . - . - . - . - . - "protein families" . - "bkc640"^^ . - . - "UniProt Post-Translational Modification" . - . - . - "Fungal Nomenclature and Species Bank" . - . - . - . - . - . - "http://purl.bioontology.org/ontology/CSP/"^^ . - "ontology" . - . - "true"^^ . - "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups"^^ . - . - . - . - . - . - . - "OGI formalized the genomic element by defining an upper class 'genetic interval'.\n\nThe definition of 'genetic interval' is \"the spatial continuous physical entity which contains ordered genomic sets(DNA, RNA, Allele, Marker,etc.) between and including two points (Nucleic Acid Base Residue) on a chromosome or RNA molecule which must have a liner primary sequence sturcture.\" \n\nRelated paper:\n\n1. Yu Lin, Norihiro Sakamoto (2009) “Genome, Gene, Interval and Ontology” Interdisciplinary Ontology Vol.2 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2009. Page(s):25-34 (http://cdb-riken.academia.edu/LinYu/Papers/142399/Genome_Gene_Interval_and_Ontology)\nYu Lin, Hiroshi Tarui, Peter Simons (2009) “From Ontology for Genetic Interval(OGI) to Sequence Assembly – Ontology apply to next generation sequencing” Proceeding of the Semantic Web Applications and Tools for Life Science Workshop, Amsterdam, Nov.20th, 2009. (http://ceur-ws.org/Vol-559/Poster2.pdf)\nYu Lin, Peter Simons (2010) “DNA sequence from below: A Nominalist Approach” Interdisciplinary Ontology Vol.3 - Proceedings of the Second Interdisciplinary Meeting, Tokyo, Feb. 28th- Mar. 1st, 2010. (http://philpapers.org/rec/LINDSF)\n\n\n"^^ . - . - . - . - "Yeast Genome Order Browser" . - . - "J55.713G"^^ . - . - "01N50ZZ"^^ . - . - "https://cropontology.org/rdf/CO_348:$1"^^ . - . - "Rhea, the Annotated Reactions Database" . - . - . - "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln="^^ . - "systems biology" . - . - . - . - . - . - . - "PMC International (PMCI) is a free full-text archive of biomedical and life sciences journal literature. PMCI is a collaborative effort between the U.S. National Institutes of Health and the National Library of Medicine, the publishers whose journal content makes up the PMC archive, and organizations in other countries that share NIH's and NLM's interest in archiving life sciences literature."^^ . - "biomedical science" . - . - "ontology" . - . - "anatomy" . - . - . - "dictyBase Expressed Sequence Tag" . - "INSDC CDS" . - . - . - . - . - . - . - "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1"^^ . - . - . - "irefweb" . - . - . - . - . - . - "obo" . - "https://www.kegg.jp/entry/$1"^^ . - . - . - . - . - . - "genome" . - "The Artificial Intelligence Ontology" . - "obo" . - . - "^[0-9]+$"^^ . - "https://modeldb.science/$1"^^ . - . - . - "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra."^^ . - "P00024"^^ . - . - . - . - . - . - . - . - . - "AGRO" . - . - "Dawood B. Dudekula" . - . - "true"^^ . - "proteomics" . - . - . - . -_:Nb4dfa24385e947998230af7585b324a6 "Crop Ontology Helpdesk" . - . -_:N9c2d149a8169411dafddcffb9f24523d "chinhda@alleninstitute.org" . - . - "OpenCitations Corpus" . - . - . - . - "microbial" . - . - "http://purl.obolibrary.org/obo/OBA_"^^ . - . - "false"^^ . - "http://classyfire.wishartlab.com/tax_nodes/C"^^ . - "IHW09326"^^ . - . - "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . - . - . - "^\\d+$"^^ . - . - "fungorum" . - "pubchem.bioassay" . - . - "genetics" . - "jfernand@um.es" . - "FB" . - . - "ontology" . - . - "https://cropontology.org/rdf/CO_347:$1"^^ . - . - . - "small molecule" . - "nlx.br" . - . - . - . - . - . - "neurodegeneration" . - "CCDC Number" . - . - "Kaggle" . - . - . - "false"^^ . - . - . - . - . -_:N90f381989f4d4da096cf6f63e3027e66 "Michael Lincoln" . - "^[8-9]\\d{3}(/[0-3])?$"^^ . - . - . - . - . - . - "gene" . - "transgenic" . - "^SIGNOR\\-[A-Z]+\\d+$"^^ . - "100000001"^^ . - . - "environmental science" . - "^\\d+$"^^ . - "dna" . - . - . - "gramene.gene" . - "arXiv" . - . - . - . - "zoology" . - "Pierre-Alain Binz" . - "VFDB Gene" . - "https://mmp.sfb.uit.no/databases/marfun/#/records/"^^ . - . - . - "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1"^^ . - . - . - "false"^^ . - . - "false"^^ . - . - "grassbase" . - . - "^AT.G[0-9]{5}$"^^ . - . - . - . - . - "co_350" . - . - . - "co_345" . - "6819"^^ . - . - . - . - . - "ecology" . - "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1"^^ . - "http://tables.pseudogene.org/[?species_name]/"^^ . - "false"^^ . - . - "sequence alignment" . - . - . - . - "publons.researcher" . - . - "false"^^ . - . - . - . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1"^^ . - . - . - "Archival Resource Key" . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/OGI_$1"^^ . - . - "marilyn.safran@weizmann.ac.il" . - "http://www.kegg.jp/entry/"^^ . - "pathoplant" . - . - "NCT" . - . - . - . - . - . - . - . - . - . - . - . - "Snapshot" . - . - "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1"^^ . - . - "false"^^ . - "npass" . - "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"^^ . - . - . -_:N90f381989f4d4da096cf6f63e3027e66 "michael.lincoln@med.va.gov" . - "https://scicrunch.org/resolver/RRID:BCBC_"^^ . - "false"^^ . - . - . - . - . - "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1"^^ . - . - . - "patent" . - "MMP743597.11"^^ . - . - . - . - . - "adms" . - . - "https://senselab.med.yale.edu/ModelDB/ModelList?id="^^ . - "biomedical science" . - . - . - . - . - "0000001"^^ . - . - . - . - "enm" . - "Biological Collections Ontology" . - . - . - "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement."^^ . - . - "modeldb" . - . - . - "false"^^ . - "An ontology to describe entities related to cardiovascular diseases"^^ . - . - . - "immunology" . - "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . - . - . - "symp" . - "dg.f82a1a" . - . - . - . - "false"^^ . - "http://www.w3.org/2000/01/rdf-schema#$1"^^ . - . - "cell" . - . - "hoelzel" . - "life science" . - "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . - "https://civicdb.org/links/variant_group/$1"^^ . - . - "easychair.topic" . - "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)."^^ . - . - . - . - . - "false"^^ . - . - "aism" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/ENVO_$1"^^ . - . - . - . - . - . - . - . - "Q-2958"^^ . - "http://purl.obolibrary.org/obo/LBO_$1"^^ . - "false"^^ . - . - . - . - "false"^^ . - . - "genome" . - . - . - "kegg.enzyme" . - "senso" . - . - . - "bind" . - "edam.format" . - . - "Intrinsically Disordered proteins with Extensive Annotations and Literature" . - "^\\d+$"^^ . - . - "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line."^^ . - . - . - "ordo" . - . - "2649230"^^ . - . - . - . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/kestrelo_"^^ . - "^\\d+$"^^ . - . - . - "false"^^ . - "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name="^^ . - . - . - . - "gwascentral.study" . - . - . - "slm" . - "https://www.ncbi.nlm.nih.gov/cdd?term="^^ . - "GR_PROTEIN" . - "^\\d{7}$"^^ . - . - "https://vcell.org/biomodel-"^^ . - "eukaryotic Subcellular Localization database" . - . - . - . - . - . - "SPU_000001"^^ . - "PD000596"^^ . - "flybase" . - . - . - "langual" . - . - . - . - . - . - . - _:Nc287de27a14b496ea3776eeac440e444 . - "genepio" . - . - "https://chem.nlm.nih.gov/chemidplus/rn/"^^ . - . - . - . - "Homologous Organ Groups" . - "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br"^^ . - . - . - . - . - . - . - "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . - . - . - "https://gitlab.com/"^^ . - . - "gnps.task" . - "Clair Kronk" . - "http://purl.obolibrary.org/obo/GAZ_"^^ . - . - . - . - . - "https://www.sharkipedia.org/traits/"^^ . - "http://getentry.ddbj.nig.ac.jp/getentry/dad/$1"^^ . - . - "xlmod" . - . - . - "Genatlas" . - "icd10" . - . - . - . - "MarDB" . - . + . + "^\\d+$"^^ . + "0000057"^^ . + . + . + . + "^\\d{7}$"^^ . "http://www.proglycprot.org/detail.aspx?ProId=$1"^^ . - "life science" . - . - . - . - . - . - . - . - "ncbi.gi" . - . - . - . - . - "^\\d{7}$"^^ . - . - "Genome Properties" . - . - "biomedical science" . - . - . - . - . - "OMOP" . - "frbr" . - . - . - . - . - "George Gkoutos" . - . - "00001234"^^ . - . - . - . - . - "This namespace is used for GA4GH Data Repository Service (DRS) access to the USA National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI), Genomic Analysis, Visualization and Informatics Lab-space (AnVIL) program data. AnVIL is a cloud-based genomic data sharing and analysis platform which facilitates integration and computing on and across large datasets generated by NHGRI programs, as well as initiatives funded by the National Institutes of Health (NIH) or by other agencies that support human genomics research. "^^ . - "ontology" . - "false"^^ . - . - "co_327" . - "Kyoto Encyclopedia of Genes and Genomes" . - . - "brain regions" . - . - "false"^^ . - "0000205"^^ . - . - . - . - "organ" . - "https://vectorbase.org/gene/"^^ . - . - . - "http://www.pharmgkb.org/drug/"^^ . - . - "biomedical science" . - "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance."^^ . - "http://purl.obolibrary.org/obo/DDPHENO_"^^ . - "Gary L Andersen" . - . - "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo"^^ . - "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes."^^ . - "1"^^ . - . - "ArrayExpress" . - . - . - . - "http://www.pocketome.org/files/$1.html"^^ . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/PD_ST_"^^ . - . - "https://metacyc.org/compound?orgid=META&id=$1"^^ . - . - "^\\w+$"^^ . - "https://w3id.org/seo#$1"^^ . - . - . - "https://www.uniprot.org/database/" . - "biology" . - "http://purl.org/linked-data/cube#$1"^^ . - . - . - . - . - "medgen.gtr" . - "^S\\d+$"^^ . - "bioinformatics" . - . - . - . - . - "4.2.78"^^ . - . - . - "http://dictybase.org/gene/"^^ . - . - . - . - "neuroscience" . - "plo" . - . - . - . - "http://purl.obolibrary.org/obo/PCO_"^^ . - . - . - "EasyChair Call for Paper" . - "^[A-Za-z0-9]+$"^^ . - . + . + . + . + "^\\d{7}$"^^ . + . + "ontology" . + . + . + . + . + "http://ratmap.org/Showgene.php?gene_stable_id=$1"^^ . + . + . + . + . + . + . + . + . + . + . + . . - . - . - "eurofir" . - . - . - . - . - . - . - . - . - . - "pancreatic islet" . - . - . - . - "subject agnostic" . - . - . - . - . - "phylogenetics" . - "medicinal chemistry" . - "http://purl.obolibrary.org/obo/$1_$2" . - . - . - . - "1174"^^ . - . - "0003003"^^ . - "biomedical science" . - "https://aopwiki.org/aops/"^^ . - . - . - . - "Established by the Financial Stability Board in June 2014, the Global Legal Entity Identifier Foundation (GLEIF) is tasked to support the implementation and use of the Legal Entity Identifier (LEI). The foundation is backed and overseen by the LEI Regulatory Oversight Committee, representing public authorities from around the globe that have come together to jointly drive forward transparency within the global financial markets. GLEIF is a supra-national not-for-profit organization headquartered in Basel, Switzerland."^^ . - "https://archive.softwareheritage.org/browse/swh:"^^ . - . - "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic."^^ . - "transport and kinetic data" . - . - "false"^^ . - . - . - . - "natural history" . - . - . - "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1"^^ . - "^\\d{7}$"^^ . - . - . - . - "MIRBASE_FAMILY" . - "2gc4E"^^ . - . - "Cluster of orthologous genes" . - . - . - "ontology" . - "mao" . - "http://purl.obolibrary.org/obo/OMIT_$1"^^ . - "obo" . - "https://cropontology.org/rdf/CO_337:$1"^^ . - "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources." . - "GiardiaDB" . - . - . - "0002058"^^ . - . - "Cassava ontology" . - . - "https://cellrepo.ico2s.org/repositories/"^^ . - . - "http://purl.obolibrary.org/obo/TAXRANK_"^^ . - . - . - . - . - . - "Groundnut ontology" . - . - . - "https://prefix.cc/" . - "Obstetric and Neonatal Ontology" . - . - . - "gene" . - . - "https://cropontology.org/rdf/CO_326:$1"^^ . - . - . - . - "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information."^^ . - . - . - "chemidplus" . - "false"^^ . - . - . - "human" . - . - . - "primary health care" . - . - "http://purl.obolibrary.org/obo/TAHH_"^^ . - . - "biology" . - . - . - "anatomy" . - "datanator.metabolite" . - "Cellosaurus Registry" . - . - "dc11" . - "rism" . - "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1"^^ . - . - . - . - "DSMZCellDive" . - . - . - . - "BugBase Protocol" . - . - . - "hl7.v2codesystem" . - . - "Intrinsically Disordered Proteins Ontology" . - "Cube db" . - "geogeo" . - "http://bioinformatics.hsanmartino.it/hypercldb/$1.html"^^ . - "engelsta@ohsu.edu" . - . - . - . - . - . - "false"^^ . - . - "ontology" . - "0001350"^^ . - "life science" . - "http://purl.obolibrary.org/obo/MS_$1"^^ . - "biomedical science" . - "worfdb" . - . - . - . - "gene" . - . - . - . - . - . - . - . - . - . - "Metabolic Encyclopedia of metabolic and other pathways" . - "http://purl.obolibrary.org/obo/CDNO_"^^ . - "K"^^ . - "http://www.proteinatlas.org/$1"^^ . - "ontology" . - . - . - "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster="^^ . - . - . - "ontology" . - "health monitoring" . - . - . - "ipi" . - "ama-cpt" . - . - "^[A-Za-z0-9]+$"^^ . - "chemistry" . - . - . - "proteomics" . - "NASA's GeneLab gathers spaceflight genomic data, RNA and protein expression, and metabolic profiles, interfaces with existing databases for expanded research, will offer tools to conduct data analysis, and is in the process of creating a place online where scientists, researchers, teachers and students can connect with their peers, share their results, and communicate with NASA."^^ . - "domain" . - "Philipp.Bucher@sib.swiss" . - "anatomy" . - "protein" . - . - . - "biomedical science" . - "dbsnp" . - . - . - . - "computer science" . - . - . - "IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers."^^ . - . - "GWAS Central Study" . - "molecular biology" . - . - . - "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$"^^ . - . - "https://grch38.togovar.org/variant/$1"^^ . - "greengenes" . - . - "expressed sequence tag" . - "false"^^ . - . - . - "PiroplasmaDB" . - . - "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number."^^ . - . - "false"^^ . - "enzyme" . - "The Cell Version Control Repository is the single worldwide version control repository for engineered and natural cell lines"^^ . - . - "gecko" . - "4QHKG"^^ . - . - . - "0000215"^^ . - . - . - . - "life science" . - . - . - "false"^^ . - . - . - "https://urgi.versailles.inra.fr/gnpis/#result/term="^^ . - . - . - "BIOMD0000000048"^^ . - "phylogenetics" . - "rapdb.locus" . - . - "ontology" . - . - . - . - "term"^^ . - . - . - . - . - . - . - . - "ttd.target" . - "https://www.kegg.jp/entry/"^^ . - . - . - . - . - . - "systems biology" . - "false"^^ . - "Eukaryotic Linear Motif Resource" . - . - . - . - "glycosciencesdb" . - "http://purl.obolibrary.org/obo/BFO_$1"^^ . - . - . - . - . - "nlm" . - "obo" . - "life science" . - "3304"^^ . - . - "High-quality Automated and Manual Annotation of microbial Proteomes" . - . - "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1"^^ . - . - "Mouse Tumor Biology Database" . - . - "parasitology" . - . - . - . - "true"^^ . - "Sharkipedia Trait" . - . - . - . - . - . - "mark@gersteinlab.org" . - "false"^^ . - . - . - "Cancer cell LInes GEne fusions portAl" . - . - . - . - . - . - . - . - . - "http://edamontology.org/data_"^^ . - . - . - "phenotype" . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=$1"^^ . + "obo" . + "0000140"^^ . + "https://go.drugbank.com/indications/$1"^^ . + . + "f.quaglia@ibiom.cnr.it" . + "This ontology is generated from the manually created specifications in the dbpedia mappings wiki. each release of this ontology corresponds to a new release of the dbpedia data set which contains instance data extracted from the different language versions of wikipedia. for information regarding changes in this ontology, please refer to the dbpedia mappings wiki."^^ . + "Ontology of Zebrafish Experimental Conditions"^^ . + "http://purl.obolibrary.org/obo/PdumDv_$1"^^ . + . + "The SNCTP (Swiss National Clinical Trials Portal) is the portal where clinical trials in Switzerland are published. It contains data from two sources: from BASEC, the national platform for submitting applications for research projects to ethics committees, and from the ICTRP (the WHO International Clinical Trials Registry Platform), which covers the 17 primary registries worldwide. The ICTRP clinical trials shown on the SNCTP are limited to those conducted in Switzerland; there is also an option to display trials conducted in one of Switzerland's neighbouring countries. [from homepage]"^^ . + . + . + "Close to 5K Categorizations for drugs, similar to ATCC."^^ . + . + "virology" . + . + . + . + . + . + . + . + . + . + "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid="^^ . + "http://vocab.getty.edu/page/tgn/$1"^^ . + . + . + . + . + "IUPHARobj" . + "structure" . + "phosphosite.sitegroup" . + . + "MCDS_S_0000000001"^^ . + "ogi" . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + "Chemical Entities of Biological Interest" . + . + . + . + . + . + . + "time" . + . +_:N696d9d4e08614292af9559f78985c799 "helpdesk@cropontology-curationtool.org" . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "https://www.ebi.ac.uk/arrayexpress/arrays/"^^ . + . + . + . + . + "hssp" . + . + "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=$1"^^ . + "Bioregistry" . + "^([hm]\\_)?\\w+Pathway$"^^ . + . + "false"^^ . + . + . + . + . + . + . + "ontology" . + . + . + . + "sgd" . + "PathoPlant®" . + . + "https://lincs.hms.harvard.edu/db/sm/$1"^^ . + . + "https://mged.sourceforge.net/ontologies/MGEDontology.php#"^^ . + . + . + "National Swine Resource and Research Center" . + . + . + . + "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable."^^ . + "rna" . + . + . + "Human Phenotype Ontology" . + . + . + . + . + "false"^^ . + "The bioRxiv is a preprint server for biology"^^ . + . + . + . + . + . + . + "BioPortal" . + "knowledge and information systems" . + "nist" . + "^\\d+$"^^ . + . + "false"^^ . + . + "https://pubchem.ncbi.nlm.nih.gov/classification/#hid="^^ . + "https://w3id.org/reproduceme#"^^ . + . + . + "false"^^ . "cell reprogramming" . - "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id="^^ . - . - "0001017"^^ . - "upa" . - "fideo" . - . - . - . - . - . - "3792"^^ . - . - "neurology" . - . - "^\\d{7}$"^^ . - . - . - . - . - "pathway" . - "false"^^ . - "proteins" . - . - "^\\d{7}$"^^ . - "false"^^ . - "commoncoreontology" . - . - "http://purl.obolibrary.org/obo/PSO_$1"^^ . - . - "https://www.kaggle.com/$1"^^ . - . - . - . - "damion_dooley@sfu.ca" . - . - "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides"^^ . - . - . - . - . - . - "https://bioregistry.io/beiresources:"^^ . - . - "Nicole Vasilevsky" . - "4779"^^ . - . - . - "false"^^ . - "^EGAD\\d{11}$"^^ . - . - "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$"^^ . - "WWF" . - . - . - "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."^^ . - "ontology" . - "https://www.biocatalogue.org/services/$1"^^ . - . - . - . - . - . - . - "4000027"^^ . - "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$"^^ . - "ontology" . - . - . - . - "Yeast Deletion and the Mitochondrial Proteomics Project" . - "https://icd.who.int/browse10/2019/en#/$1"^^ . - . - "hms.lincs.compound" . - . - "InChIKey" . - "CHEMBL3467"^^ . - "http://neuromorpho.org/neuron_info.jsp?neuron_name="^^ . - . - "sbo" . - . - . - . - . - "sharkipedia.trait" . - "^LTS\\d{7}$"^^ . - "880798137"^^ . - . - . - . - "ontology" . - . - . - . - . - "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1"^^ . - "http://www.kegg.jp/entry/$1"^^ . - "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis."^^ . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - "^CA\\d+$"^^ . - . - . - "^\\d+$"^^ . - . - "oslc" . - . - "research" . - . - . - . - . - . - "http://www.ymdb.ca/compounds/"^^ . - . - "agriculture" . - "true"^^ . - . - . - "ATCC(in host)" . - . - . - . - . - "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue."^^ . - . - . - . - . - . - . - . - . - "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families."^^ . - . - "data management" . - "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."^^ . - "SCC111"^^ . - "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology."^^ . - "^[1-9]\\d{0,11}$"^^ . - . - "lipid" . - "PRI10"^^ . - "^[0-9]+$"^^ . - . - "false"^^ . - . - "SLCTR/2023/010"^^ . - "neuroname" . - . - "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web."^^ . - . - . - . - "Alzforum Mutations" . - "http://purl.org/oban/$1"^^ . - . - "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information."^^ . - . - "true"^^ . - . - . - . - "http://rebase.neb.com/rebase/enz/$1.html"^^ . - . - . - . - . - . - . - . - . - . - "NeuroNames" . - . - "LOC_Os01g49190.1"^^ . - . - "Taxonomic rank vocabulary" . - . - . - . - . - "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid="^^ . - . - "^\\d{7}$"^^ . - . - "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q="^^ . - . - . - . - . - . - "life science" . - "http://purl.org/net/orth#"^^ . - . - . - "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:"^^ . - . - . - . - . - . - "subject agnostic" . - "Global Proteome Machine Database" . - . - . - "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."^^ . - . - "Rat Genome Database qTL" . - . - . - "spd" . - . - "0000091"^^ . - "^\\d{7}$"^^ . - "cell types" . - . - . - "12e8LH"^^ . - . - . - "^\\d+$"^^ . - . - . - . - "drugbank.bioentity" . - "NameRXN" . - "G02681"^^ . - . - "genomics" . - . - . - "life science" . - . - "l.andres.hernandez.18@student.scu.edu.au" . - . - . - "https://www.datascienceontology.org/concept/"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - . - "https://www.ebi.ac.uk/ega/datasets/$1"^^ . - "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID="^^ . - . - . - "The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms."^^ . - "SP_DI" . - . - "mouse" . - "life sciences" . - . - . - "PathoPlant®" . - . - "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$1"^^ . - "^ChiCTR\\d+$"^^ . - . - "BloodPAC" . - . - . - . - "Astrophysics Source Code Library" . - . - . - . - . - . - . - . - . - "false"^^ . - "false"^^ . - "spike.map" . - . - . - . - "false"^^ . - . - "LTS0004651"^^ . - . - "mathematics" . - . - . - . - . - "31"^^ . - . - "ClassyFire" . - "frederic.bastian@unil.ch" . - . - . - . - . - . - "regulation" . - "Soybean Trait Dictionary in template v5 - IITA - July 2015"^^ . - "Gene Ontology Database references" . - "Bibliographic data for all the journals, books, audiovisuals, computer software, electronic resources and other materials that are in the library's holdings."^^ . - . - . - "^MMP\\d+.\\d+$"^^ . - "0000140"^^ . - . - . - "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"^^ . - . - "Iranian Registry of Clinical Trials" . - . - . - . - . - . - . - . - "Biotin_biosynthesis"^^ . - . - . - . - "https://sumlineknowledgebase.com/?page_id="^^ . - . - . - "vz" . - . - . - . - . - "UniProt Protein" . - . - . - "biochemistry" . - . - "DrugBank Drug Category" . - . - "^([A-Z]+)?\\d+(\\.\\d+)?$"^^ . - "PF11_0344"^^ . - . - "cgnc" . - . - . - . - . - . - "laevis" . - "ontology" . - . - "Geonamaes" . - "regulation" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/CDAO_$1"^^ . - "Software Package Data Exchange License" . - "http://www.iresite.org/IRESite_web.php?page=view&entry_id="^^ . - "ncbiprotein" . - . - . - "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory."^^ . - . - . - . - . - . - "true"^^ . - . - . - "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1"^^ . - . - "bioinformatics" . - . - . - . - . - "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data."^^ . - "0000031"^^ . - . - . - . - "0000156"^^ . - . - . - "structure" . - . - "medicine" . - "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1"^^ . - . - . - . - "obo" . - "phenomics" . - . - "^MCDS_S_[a-zA-Z0-9]{1,10}$"^^ . - . - . - . - "https://cameochemicals.noaa.gov/chemical/"^^ . - "Bryce Mecum" . - . - . - . - "Ontology of Prokaryotic Phenotypic and Metabolic Characters" . - . - . - . - "familyName"^^ . - "G77500AY"^^ . - "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$"^^ . - . - "http://planttfdb.cbi.pku.edu.cn/tf.php?uid="^^ . - . - . - . - . - "live animal" . - _:N90f381989f4d4da096cf6f63e3027e66 . - "Shape Expression Vocabulary" . - . - . - . - "kisao" . - "^\\d{7}$"^^ . - . - "ensembl.bacteria" . - "false"^^ . - . - . - "false"^^ . - "https://www.re3data.org/repository/$1" . - "http://purl.obolibrary.org/obo/CHEBI_$1"^^ . - "c.dudek@tu-braunschweig.de" . - . - . - . - "idoo" . + . + . + . + "VirOligo" . + "Arabidopsis Small RNA Project is a repository of data on Arabidopsis small RNA genes."^^ . + "http://bioportal.bioontology.org/ontologies/$1"^^ . + . + . + "PA131"^^ . + "^\\w\\d{4}\\w\\d{2}(\\-[35])?$"^^ . + . + "http://purl.org/spar/pwo/$1"^^ . + "sequence alignment" . + . + "Search Tool for Interactions of Chemicals" . + "Matúš Kalaš" . + "false"^^ . + "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId="^^ . + . + . + "CRISPRdb" . + . + . + "true"^^ . + . + . + "eolife" . + "ev:E00032"^^ . + . + . + . + . + . + . + "https://pubchem.ncbi.nlm.nih.gov/element/"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . + . + . + "https://www.datascienceontology.org/concept/$1"^^ . + . + "P29894"^^ . + . + "^\\d+$"^^ . + . + . + "false"^^ . + . + "^\\d{7}$"^^ . + . + "Rice Metabolic Pathways" . + "false"^^ . + "xao" . + . + . + . + . + . + "agriculture" . + . + . + . + "http://purl.unep.org/sdg/SDGIO_"^^ . + . + "data management" . + . + . + "Gene Expression Analysis Resource" . + "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1"^^ . + . + "DUO is an ontology which represent data use conditions."^^ . + . + "DICOM Controlled Terminology" . + "MMP02954345.1"^^ . + . + . + "^[A-Za-z0-9-]+$"^^ . + . + . + . . - . - "sitex" . - "^\\d{7}$"^^ . - . - . - "60025709"^^ . - . - . - "genomics" . - . - "biodiversity" . - . - . - . - . - . - "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments."^^ . - . - . - . - . - "false"^^ . - . - "nextprot" . - . - . - "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol."^^ . - . - . - . - . - . - . - . - "data governance" . - "Logical Observation Identifiers Names and Codes" . - . - . -_:N990a89615e4241f58815382f39a098e3 "ncictcaehelp@mail.nih.gov" . - "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues."^^ . - "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."^^ . - . - . - . - . - "false"^^ . - . - "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog."^^ . - . -_:N61e212a4682e4665ab4cc6dd850a2aa6 "J.Bard@ed.ac.uk" . - . - . - . - . - "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles."^^ . - . - . - . - "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc."^^ . - "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."^^ . - "MGI" . - "1784"^^ . - . - . - . - . - "false"^^ . - . - "^\\d{7}$"^^ . - . - "https://run.biosimulations.org/simulations/$1"^^ . - . - "http://purl.obolibrary.org/obo/SBO_$1"^^ . - "life science" . - . - "false"^^ . - "chemdb" . - . - "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1"^^ . - "ontology" . - . - "^\\d{7}$"^^ . - "social science" . - . - . - "25782"^^ . - "helpdesk@cropontology-curationtool.org" . - . - . - . - . - . - "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment."^^ . - "sigmaaldrich" . - "eukaryota" . - "bioRxiv" . - . - . - "drugs" . -_:N8ac8ba2b4326434e857290d3799d8f7a "NLM Customer Service" . -_:N09955625048e48879dec33c0f3843916 "fred@fgiasson.com" . - "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query="^^ . - . - . - _:N8375243ef7764e1790fa4dedefde6ea2 . - . - . - . - . - "Jörg Overmann" . - "life science" . - . - . - . -_:Nd9a3ed545fc949169d71f3ee1eee9f9e "William Bug" . - "https://amzn.com/"^^ . - "^[A-Z][a-z][0-9]+$"^^ . - . - . - "bel" . - . - . - . - . - "^ENSG\\d{11}$"^^ . - . - . - "gianni.cesareni@torvergata.it" . - "HBG284870"^^ . - . - . - . - "dhba" . - "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used."^^ . - "PlasmoDB" . - "3546"^^ . - . - "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"^^ . - . - . - . - . - "The coding sequence or protein identifiers as maintained in INSDC."^^ . - . - "https://cropontology.org/rdf/CO_350:$1"^^ . - . - "cst" . - . - . - . - "anatomy" . - . - . - . - "ontology" . - "bel" . - . - . - . - "Oryzabase Reference" . - . - . - "Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species."^^ . - . - "https://www.webelements.com/"^^ . - . - "medicine" . - . - . - "Q9P0K8"^^ . - . - . - "maxo" . - . - . - "^\\d+$"^^ . - . - . - "UniProtKB-KW" . - . - . - "bgee.organ" . - "imgt.hla" . - . - . - . - "http://purl.obolibrary.org/obo/OlatDv_"^^ . - "9-1-1 Complex"^^ . - "structure" . - . - . - "experiment" . - . - "Cell line collections (Providers)"^^ . - "https://www.ebi.ac.uk/intact/interaction/$1"^^ . - "https://data.bloodpac.org/ga4gh/drs/v1/objects/$1"^^ . - . - "comparative genomics" . - "24801"^^ . - "false"^^ . - . - "oid" . - "^(MNXR\\d+|EMPTY)$"^^ . - "Medical Data Models" . - "ontology" . - . - "gramene.growthstage" . - . - . - . - . - "GE86325"^^ . - . - "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings."^^ . - "The Immune Epitope Database (IEDB) is a freely available resource funded by NIAID. It catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation. The IEDB also hosts tools to assist in the prediction and analysis of epitopes."^^ . - . - "nmr" . - . - . - . - . - . - . - "http://www.treefam.org/family/$1"^^ . - . - . - . - . - _:N3fa0685659fd4de4814b1950f8c1dede . - . - . - "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."^^ . - "http://purl.obolibrary.org/obo/MONDO_$1"^^ . - "biomedical science" . - . - . - . - "sibo" . - "biology" . - . - . - . - . - "microRNA Ontology" . - . - . - . - "FlyBase internal citation identifiers"^^ . - . - "biogrid.interaction" . - . - _:N5b264322e16445358ec3793e74d2c953 . - . - . - "fma" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/EUPATH_$1"^^ . - . - . - . - "false"^^ . - "genomics" . - "ontology" . - . - _:N3592e45525ca4d49ad9426f35d117032 . - . - . - . - . - "biosystems" . - . - . - "^\\d{7}$"^^ . - "plwhetzel@gmail.com" . - "false"^^ . - . - . - "false"^^ . - . - . - "ASPL0000349247"^^ . - . - . - "^P\\w+$"^^ . - "Publishing Roles Ontology" . - . - . - . - "Developing Mouse Brain Atlas" . - . - "Minimal Information About Anatomy ontology" . - "false"^^ . - "mlc" . - . - "Núria Queralt Rosinach" . - "smpdb" . - . - "https://bioregistry.io/metaregistry/prefixcommons/"^^ . - "false"^^ . - . - . - . - "An ontology of phenotypes covering microbes"^^ . - "0000254"^^ . - . - . - "preclinical studies" . - . - . - . - . - "Robert Court" . - . - . - "TVAG_386080"^^ . - . - . - . - . - . - . - "TB2:S1000"^^ . - "https://cropontology.org/rdf/CO_330:$1"^^ . - "http://www.pantree.org/node/annotationNode.jsp?id="^^ . - . - . - . - . - "fovt" . - . - . - . - . - . - "Hector Escriva" . - "^\\d{7}$"^^ . - . - "0000550"^^ . - . - . - "ICEberg family" . - . - "xenbase" . - . - "linikujp@gmail.com" . - . - "European Medicines Evaluation Agency" . - . - . - . - "false"^^ . - "violinnet" . - . - . - . - . - "planp" . + . + . + "Stefan Kuhn" . + . + "Interlab Cell Line Collection" . + . + "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies."^^ . + "PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s."^^ . + . + . + . + . + . + . + . + . + "https://pubchem.ncbi.nlm.nih.gov/substance/$1"^^ . + . + "obo" . + "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . + "DiscoverX cell line products" . + . + . + "vendor" . + . + . + . + . + . + . + "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . + . + "false"^^ . + "grsdb" . + "Genatlas" . + . + "http://www.coloncanceratlas.org/search_cell_line?cell_line=$1"^^ . + . + . + "life science" . + "csa" . + . + . + . + . + "Electrocardiogram Ontology" . + . + . + . + "The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. "^^ . + . + "bioinformatics" . + "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . + "Saccharomyces cerevisiae promoter database" . + . + "hl7.v3codesystem" . + . "https://www.ebi.ac.uk/miriam/main/resources/$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . - "^A_\\d+_.+$"^^ . - "Database of validation results for ligands and non-standard residues in the Protein Data Bank."^^ . - "gene" . - "http://champ-project.org/images/ontology/cao.owl#CAO_$1"^^ . - . - . - . - "dto" . - "agriculture" . - "biology" . - . - "http://www.genomesize.com/result_species.php?id="^^ . - "SSToSS is a database which provides sequence-structural templates of single member protein domain superfamilies like PASS2. Sequence-structural templates are recognized by considering the content and overlap of sequence similarity and structural parameters like, solvent inaccessibility, secondary structural content, hydrogen bonding and spatial packing of the residues among the protein of single member superfamilies."^^ . - . - . - . - . - . - . - . - "CIAT Common bean trait dictionary - version August 2014"^^ . - . - . - . - "vegbank" . - . - "http://purl.obolibrary.org/obo/AEON_"^^ . - "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. "^^ . - . - . - "Friend of a Friend" . - "^MSV\\d+$"^^ . - "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - . - "MetaNetX chemical" . - "Sol Genomics Network" . - . - . - "dna" . - . - "medical informatics" . - "genetic construct" . - . - "allyson.lister@oerc.ox.ac.uk" . - "^G(PL|SM|SE|DS)\\d+$"^^ . - . - . - . - "mfomd" . - "^\\d+$"^^ . - . - "^[A-Z]+[0-9]+(\\.\\d+)?$"^^ . - "A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other."^^ . - . - . - "pactr" . - . - "false"^^ . - . - "transcript" . - . - . - . - "^[A-Za-z0-9-]+$"^^ . - . - . - . - . - . - . - "dermatology" . - "UniProt Keywords" . - . - . - "John Kunze" . - . - "ontology" . - "false"^^ . - "Clinical Trials Ontology" . - . - . - "intenz" . - . - . - "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data.\n"^^ . - . - . - . - . - "false"^^ . - . - "090924"^^ . - . - _:Nb500c8d05f814fa9a666feba602bbf01 . - "scholia.resource" . - "https://europepmc.org/article/ppr/$1"^^ . - "health science" . - . - . - "Plant Anatomy Ontology" . - "^JCRB\\d+$"^^ . - "288"^^ . - "false"^^ . - . - "^CNP\\d{7}$"^^ . - . - . - . - . - "Pazar Transcription Factor" . - . - . - "https://www.internationalgenome.org/data-portal/sample/"^^ . - "Mouse pathology ontology" . - "QJ51RV02"^^ . - . - . - . - "proteomics" . - "f665230-5267"^^ . - . - . - . - . - . - . - . - . - . - "obo" . - . - "^C\\d{8}$"^^ . - "Gene Ontology Annotation Database" . - . - . - "https://ecocyc.org/gene?id="^^ . - . - . - "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access."^^ . - "genomics" . - . - "1257009"^^ . - "small molecule" . - "172"^^ . - . - "https://www.ncbi.nlm.nih.gov/nucleotide/$1"^^ . - . - "anatomy" . - . - "david.c.blackburn@gmail.com" . - . - "false"^^ . - . - . - . - "ecg" . - . - "^E(S|D)i\\d+-\\w$"^^ . - . -_:N441b18bc09374ab9a3f9a92447d2330a "Michael J. Lincoln MD" . - . - . - "http://purl.obolibrary.org/obo/GENEPIO_"^^ . - "CCDS13573.1"^^ . - . - . - . - . - . - "Selventa Families" . - "50885"^^ . - . - . - . - . - "https://hdl.handle.net/hdl:20.500.12633/"^^ . - "false"^^ . - "gfrishkoff@gsu.edu" . - . - . - "http://purl.org/sig/ont/fma/fma$1"^^ . - . - . - "genome" . - . - "C0017565"^^ . - "^\\d+$"^^ . - . - "taxon" . - . - . - . - "structure" . - "https://ocid.ontochem.com/prefname?ocid="^^ . - . - "https://rrid.site" . - "false"^^ . - . - . - . - . - "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)."^^ . - . - . - . - . - . - "https://polbase.neb.com/polymerases/$1#sequences"^^ . - . - . - . - . - . - . - "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1"^^ . - . - "https://civicdb.org/links/evidence/$1"^^ . - . - "opm" . - "278"^^ . - . - . - . - "00103"^^ . - . - . - "FunderRegistry" . - "Cuban Registry of Clinical Trials" . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "National Library of Medicine Catalog" . - "BioData Catalyst" . - . - . - . - "^\\d+$"^^ . - . - . - "https://cropontology.org/rdf/CO_321:$1"^^ . - . - "C063233"^^ . - "http://bactibase.hammamilab.org/"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - "false"^^ . - . - "Nathan Baker" . - . - . -_:Nd9b3195f68dc45c99c9355f67278f11b "Usha Mahadevan" . - . - . - . - "^\\d+$"^^ . - . - . - "http://purl.obolibrary.org/obo/CHIRO_$1"^^ . - . - . - . - . - "ontology and terminology" . - . - . - "P00266"^^ . - "iuphar.ligand" . - "ProtoNet Cluster" . - "^[0-9]*$"^^ . - . - . - . - . - "http://www.vbase2.org/vgene.php?id="^^ . - "^\\d+$"^^ . - . - . - "false"^^ . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/XCO_$1"^^ . - . - "Health Canada Drug Identification Number" . - . - . - . - . - . - "zea" . - . - "https://doulix.com/biomodules/"^^ . - . - "^\\w+$"^^ . - . - "dna" . - "cordis.article" . - . - "false"^^ . - . - . - "https://www.aapc.com/codes/cpt-codes/"^^ . - . - . - "^\\d+$"^^ . - . - "false"^^ . - . - "^[a-zA-Z0-9\\-:#/\\.]+$"^^ . - . - "phylogenetics" . - . - . - "https://caninecommons.cancer.gov/#/study/"^^ . - . - . - "^\\d{6}$"^^ . - . - "00000268"^^ . - . - "https://neurovault.org/collections/$1"^^ . - . - "^[A-Z0-9]+$"^^ . - . - "^\\D{4}\\d{6}(\\-\\D{2})?$"^^ . - . -_:N5d7232cb5c7e4b6dbfd3e210772aaf35 "Crop Ontology Helpdesk" . - . - . - . - . - . - . - . - "github" . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . - "true"^^ . - . - "false"^^ . - "GT10"^^ . - . - . - . - "true"^^ . - "2701"^^ . - . - . - "https://pubchem.ncbi.nlm.nih.gov/compound/"^^ . - . - . - "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "Virus-HostDB" . - . - "RO_proposed_relation" . - . - . - . - . - "http://noctua.geneontology.org/editor/graph/gomodel:"^^ . - "bacmap.map" . - . - . - "^MAM\\d{5}\\w$"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/MAT_"^^ . + "^\\d+$"^^ . + "life science" . + "^\\d{7}$"^^ . + "The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma."^^ . + . + . + . + . + "false"^^ . + "Merck Millipore (EMD Millipore)" . + . + "false"^^ . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."^^ . + "jiezheng@pennmedicine.upenn.edu" . + . + . + "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$"^^ . + "chebi" . + "The COVID-19 Infectious Disease Ontology" . + . + . + . + . + . + . + . + "an ontology for vector surveillance and management, focusing on arthropod vectors and vector-borne pathogens with relevance to humans or domestic animals, and with special emphasis on content to support operational activities through inclusion in databases, data management systems, or decision support systems."^^ . + "^\\d{8}$"^^ . + . + "subject" . + "true"^^ . + . + . + "63"^^ . + "00000014"^^ . + "nsc" . + . + "John-Marc Chandonia" . + . + "^\\d{7}$"^^ . + . + . + . + "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified."^^ . + . + "anatomy" . + "https://panoramaweb.org/$1.url"^^ . + "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature."^^ . + . + "OSC1416"^^ . + "metascience" . + . + . + "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis."^^ . + "21552"^^ . + . + "cell replacement" . + . + . + . + "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/BFO_"^^ . + "Identifier for a user in iNaturalist"^^ . + . + . + . + . + . + . + "alternative splicing" . + . + . + . + "Veterans Health Administration (VHA) unique identifier" . + . + . + . + "CHEBI" . + "This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes."^^ . + . + . + "3771992"^^ . + "http://sugarbind.expasy.org/"^^ . + . + "ILX" . + . + . + "https://cells.ebisc.org/$1"^^ . + . + . + . + "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information."^^ . + "false"^^ . + . + . + . + . + . + "UniProt Cross-ref database" . + . + . + . . - . - . - "protein" . - "Protein Model Database" . - . - "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1"^^ . - . - "^(\\d{8}|(\\w+\\d+\\w+))$"^^ . - . - . - . - "dna" . - . - "DSSTox_Generic_SID" . - . - . - "health science" . - "preclinical studies" . - . - . - . - . - . - . - "60141"^^ . - "ontology" . - . - . - . - . - "obo" . - . - . - . - "transcriptomics" . - . - "http://purl.bioontology.org/ontology/IDODEN_"^^ . - "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid="^^ . - . - . - . - "false"^^ . - "false"^^ . - . - . - "Exposure ontology" . - . - . - . - "raymond@caltech.edu" . - . - . - . - . - . - . - . - "beck@ncbi.nlm.nih.gov" . - . - . - . - . - "Coleoptera Anatomy Ontology" . - "349124"^^ . - . - . - "Tatsuya Kushida" . - . - "https://radlex.org/RID/$1"^^ . - "biochemistry" . - "ontology" . - "SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes."^^ . - "https://bioregistry.io/cellbank.australia:"^^ . - . - . - . - . - . - "^\\d+$"^^ . - "protein" . - . - "true"^^ . - . - . - . - . - "mfo" . - "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information."^^ . - "obo" . - "nextprot.family" . - . - . - . - . - . - . - "ontology" . - "ontology" . - . - "BN000065"^^ . - "Gazetteer" . - . - . - . - . - . - . - "BirdBase" . - "ontology" . -_:N5a3da52228154c328228750974332655 "Crop Ontology Helpdesk" . - . - . - . - . - . - . - . - "fly lines" . - . - "ontology" . - "life science" . - . - . - . - "sedml.language" . - "WBGene00000001"^^ . - . - "http://en.wikipedia.org/wiki/$1"^^ . - "life science" . - "John Graybeal" . - "computer science" . - "http://w3id.org/owlstar/"^^ . - . - "WGS84 Geo Positioning" . - . - . - . - . - . - "https://gpcrdb.org/protein/"^^ . - "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$"^^ . - "A subspace of Metabolic Atlas for reactions."^^ . - . - . - . - . - . - . - "plant" . - . - . - . - "ontology" . - "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."^^ . - . - . - . - "false"^^ . - "http://viroligo.okstate.edu/main.php?vid=$1"^^ . - . - . - . - . - . - "MSBNK-IPB_Halle-PB000166"^^ . - "cultured cell" . - "tissue" . - . - "ontology" . - . - . - "experimental plant" . - "https://mobidb.org/"^^ . - . - . - "rs121909098"^^ . - "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays."^^ . - "https://reporter.nih.gov/project-details/$1"^^ . - . - "12969"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "gene" . - . - "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#"^^ . - "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?"^^ . - . - . - "ab275461"^^ . - . - . - . - "https://knowledge.lonza.com/cell?id=$1"^^ . - . - "https://athena.ohdsi.org/search-terms/terms/$1"^^ . - . - . - "obo" . - . - . - "https://sparontologies.github.io/fabio/current/fabio.html#$1"^^ . - . - . - "http://purl.obolibrary.org/obo/WBbt_"^^ . - . - "LOC_Os02g13300"^^ . - . - . - "false"^^ . - . - "http://vbrc.org/gene_detail.asp?gene_id="^^ . - "worldavatar.kin" . - "nlx.chem" . - . - "life science" . - . - "rxnorm" . - . - . - "^\\d+$"^^ . - . - . - "Asset Description Metadata Schema Vocabulary" . - . - . - "Mondo Disease Ontology" . - . - "biochemistry" . - . - . - . - . - "coriell" . - . - . - "pubmed" . - "false"^^ . - . - . - "false"^^ . - . - . - "^\\d+$"^^ . - . - "Antimicrobial Peptide Database" . - "https://pubchem.ncbi.nlm.nih.gov/element/"^^ . - "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1"^^ . - . - . - . - . - . - "dna" . - . - . - "false"^^ . - . - . - . - . - . - "TS-0001"^^ . - "false"^^ . - . - . - "12dgr161"^^ . - "developmental biology" . - . - . - . - . - . - . - . - . - "2170610"^^ . - . - "Animal Genome Chicken QTL" . - "RBR-6qvdftm"^^ . - . - . - . - . - . - . - . - . - "431472"^^ . - "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web"^^ . - . - . - "http://purl.obolibrary.org/obo/COB_"^^ . - "rna" . - . - "https://www.ebi.ac.uk/arrayexpress/arrays/"^^ . - "fairsharing.user" . - "false"^^ . - . - "^DAP\\d+$"^^ . - "viaf" . - "Datanator Reaction" . - . - . - . - . - . - . - "ontology and terminology" . - . - "bel" . - . - "false"^^ . - "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions."^^ . - . - . - "http://purl.obolibrary.org/obo/OHPI_"^^ . - . - "https://genelab-data.ndc.nasa.gov/genelab/accession/"^^ . - "^\\d+$"^^ . - . - . - . - . - "0000001"^^ . - "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee."^^ . - "structure" . - "An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF."^^ . - . - . - "classification" . - . - . - . - "beiresources" . - . - "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains."^^ . - . - . - . - "mampol" . - . - "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA."^^ . - . - . - "100"^^ . - . - . - . - . - "Xenopus Phenotype Ontology" . - "BeetleBase is a comprehensive sequence database and community resource for Tribolium genetics, genomics and developmental biology. It incorporates information about genes, mutants, genetic markers, expressed sequence tags and publications."^^ . - . - . - . - . - "icd10pcs" . - . -_:N60032d4dab624076aa02184b78b7efd2 "Crop Ontology Helpdesk" . - . - "NCBI Bookshelf" . - . - "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1"^^ . - "life science" . - "upper-level ontology" . - "DG00301"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - "urmas.koljalg@ut.ee" . - "oma.hog" . - . - . - . - . - . - . - . - . - "false"^^ . - "https://bioregistry.io/csd:"^^ . - . - . - . - "http://purl.obolibrary.org/obo/MFMO_$1"^^ . - "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0="^^ . - . - . - "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019"^^ . - . - . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - "Milton H. Saier, Jr." . - "Antibiotic resistance genes and mutations"^^ . - . - "structure" . - . - . - "life science" . - . - . - . - "http://www.bootstrep.eu/ontology/GRO#$1"^^ . - . - . - . - . - "0000040"^^ . - "http://purl.obolibrary.org/obo/HANCESTRO_$1"^^ . - "pdb-ccd" . - "false"^^ . - . - . - . - . - . - "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1"^^ . - "National Swine Resource and Research Center" . - "bco" . - . - . - "http://www.molbase.com/en/index.php?app=search&search_keyword="^^ . - . - . - "https://www.thaiclinicaltrials.org/show/$1"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/MFO_$1"^^ . - . - . - . - . - . - . - . - . - "kuiper@bio.ntnu.no" . - . - "hpath" . - . - . - "785"^^ . - . - "uniprot.chain" . - "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"^^ . - . - . - . - . - . - . - . - . - "seed.reaction" . - "https://n2t.net/$1:" . - . - "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1"^^ . - "FaBiO, the FRBR-aligned Bibliographic Ontology" . - . - "Biological Magnetic Resonance Data Bank" . - "AKR-270"^^ . - . - . - . - . - "^\\d+$"^^ . - "primary health care" . - "Homeodomain Research" . - . - . - . - . - . - . - "GrainGenes" . - . - . - . - "biology" . - . - . - "chemical" . - "0001"^^ . - . - "Curated Drug-Drug Interactions Database - Interaction" . - "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms."^^ . - "Blue Brain Project Knowledge Graph" . - . - "MicrosporidiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - . - "^\\w+$"^^ . - . - . - . - . - "The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes."^^ . - "vto" . - "anatomy" . - "HBG004341"^^ . - "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites."^^ . - "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." . - . - "https://w3id.org/oc/meta/$1"^^ . - "false"^^ . - . - . - . - "bioinformatics" . - "metabolites" . - . - . - . - "^\\d{7}$"^^ . - . - . - . - "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$"^^ . - . - . - "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u"^^ . - "Identifier of an entry from the AAindex database."^^ . - . - . - . - "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1"^^ . - . - . - . - . - . - "ssbd.dataset" . - "obo" . - "false"^^ . - . - . - "enzymology" . - . - "obo" . - . - . - . - . - . - _:N1e1af9a9bb40494590a2f364cd4896a2 . - "vw253@cam.ac.uk" . - "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id="^^ . - "developmental biology" . - . - "Plant Growth and Development Stage" . - "anatomy" . - "ecyano.model" . - "small molecule" . - "ICEberg cis-integrative and mobilizable element" . - "Database of Aligned Ribosomal Complexes" . - . - . - . - "mmusdv" . - . - "obo" . - "William Hayes" . - . - "atmospheric science" . - . - . - "^\\d+$"^^ . - "http://www.ifomis.org/bfo/1.1/snap#"^^ . - "doap" . - . - . - . - "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources."^^ . - "cog" . - . - "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule=$1"^^ . - "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable"^^ . - . - . - . - "Database of homology-derived secondary structure of proteins" . - . - "https://bdsc.indiana.edu/stocks/"^^ . - . - "Veterinary Nomenclature" . - "psipar" . - . - . - . - . - "tahh" . - . - . - "^\\d+$"^^ . - "development" . - . - "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - . - . - "The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit."^^ . - . - . - . - "Comprehensive Resource of Mammalian protein complexes" . - . - . - "http://snomed.info/id/$1"^^ . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - . - "http://purl.org/spar/doco/$1"^^ . - . - . - "http://biocyc.org/getid?id=$1"^^ . - "false"^^ . - . - "^\\d+$"^^ . - "ontology" . - "PMCID" . - "true"^^ . - "chemistry" . - . - . - "linguist" . - . - . - . - "http://purl.obolibrary.org/obo/PLANP_$1"^^ . - "obo" . - . - "Environment Ontology" . - . - . - "molecular genetics" . - "Philippine Health Research Registry" . - . - "http://www.w3.org/XML/1998/namespace#"^^ . - . - . - "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:\n\n- `PC`: positive control\n- `NC`: negative control\n- `AS`: antiserum\n- `PV`: plant viruses\n- `RT`: recommended test\n- `ACC`: human or animal cell line\n- `DSM`: microorganism cell line"^^ . - . - . - . - "false"^^ . - . - . - . - . - "false"^^ . - "^CLPUB\\d+$"^^ . - "false"^^ . - "http://purl.obolibrary.org/obo/CARO_$1"^^ . - . - "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid="^^ . - "SMP" . - "dggr" . - . - . - . - . - . - . - "JMChandonia@lbl.gov" . - . - . - . - "elspeth@genenames.org" . - "bibo" . - "KEGG Metagenome" . - "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1"^^ . - . - . - . - . - "A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). Such operation is either a constant function, or an operation depending only on the underlying state. b) An operation that may modify the underlying state but has no output. c) The singular-case operation with no input or output, that still may modify the underlying state."^^ . - "microbiology" . - "https://n2t.net" . - "obo" . - . - "cjmungall@lbl.gov" . - . - . - "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)."^^ . - . - . - . - "Human Protein Atlas tissue profile information" . - . - . - . - . - . - "ISRCTN10175490"^^ . - . - . - . - . - . - . - . - . - "obo" . - . - . - . - . - . - . - "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets."^^ . - . - . - . - . - . - . - . - "sabiork.kineticrecord" . - "OASIS Open Services for Lifecycle Collaboration Core Vocabulary" . - "00026f50-858a-446b-8ed9-b0e3ecd7b20e"^^ . - . - . - . - . - . - _:Nd77a505b50a148869c0fc766eb978e4c . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/FBdv_$1"^^ . - . - "Veterans Health Administration (VHA) unique identifier" . - . - . - . - . - . - "Golm Metabolome Database" . - "false"^^ . - . - . - . - "http://www.kegg.jp/entry/"^^ . - "https://loinc.org/$1"^^ . - "Homology Ontology" . - . - "TopFind" . - . - . - . - "atc" . - . - . - . - . - "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1"^^ . - . - . - . - . - . - . - "oryzabase.reference" . - . - . - . - . - . - "life science" . - "The allele registry provides and maintains identifiers for genetic variants"^^ . - "false"^^ . - . - . - "text mining" . - "https://bioregistry.io/odam:"^^ . - . - . - "false"^^ . - . - "bioPIXIE is a novel system for biological data integration and visualization. It allows you to discover interaction networks and pathways in which your gene(s) (e.g. BNI1, YFL039C) of interest participate."^^ . - "http://purl.obolibrary.org/obo/EPIO_$1"^^ . - . - . - "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:"^^ . - . - "EGAD00000000001"^^ . - . - . - . - . - . - "^[a-z0-9]+$"^^ . - . - . - "false"^^ . - . - "miriam.collection" . - . - . - . - "40592-R001-100"^^ . - "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi."^^ . - . - "TTHERM_00648910"^^ . - . - "true"^^ . - . - . - "^\\w+$"^^ . - . - . - . - . - "antibody" . - "NodeShape"^^ . - "The International Molecular Exchange (IMEx) is a consortium of molecular interaction databases which collaborate to share manual curation efforts and provide accessibility to multiple information sources."^^ . - . - . - . - . - "structure" . - "false"^^ . - . - . - . - "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1"^^ . - . - . - . - . - "https://www.clinicaltrials.gov/study/"^^ . - . - . - . - . - "https://cryptodb.org/cryptodb/app/record/gene/"^^ . - . - . - . - . - "false"^^ . - "ontology" . - "ontology" . - . - "https://civicdb.org/links/assertions/$1"^^ . - . - "astd" . - . - . - . - . - . - "2679240"^^ . - . - . - "CTD Chemical" . - . - "SSF57615"^^ . - . - . - "http://purl.obolibrary.org/obo/HsapDv_$1"^^ . - . - . - . - . - "dcterms" . - . - "esldb" . - "false"^^ . - "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)."^^ . - "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"^^ . - . - . - "Document Components Ontology" . - "https://reaxys.emolecules.com/cgi-bin/more?vid=$1"^^ . - "Allotrope Merged Ontology Suite"^^ . - "https://pir.georgetown.edu/cgi-bin/ipcSF?id="^^ . - "JCOIN" . - . - . - "hydrogeology" . - . - "https://cropontology.org/rdf/CO_357:$1"^^ . - . - . - . - . - "The international standard for identifying health measurements, observations, and documents."^^ . - "GO Relations" . - . - . - "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures."^^ . - . - "obo" . - . - . - . - . - "aeo" . - "pathway" . - "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1"^^ . - "google.scholar" . - . - "hasPrimaryUriPattern"^^ . - . - . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid="^^ . - "obo" . - . - . - . - "false"^^ . - "obo" . - "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information."^^ . - . - "MediaDive Medium" . - . - . - . - "go.chemical" . - . - . - . - . - . - . - . - . - . - . - . - "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones."^^ . - . - . - . - "obo" . - . - . - . - "4DN"^^ . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/PROCO_$1"^^ . - "03307879"^^ . - "18"^^ . - "^\\w+$"^^ . - . - "0000002"^^ . - . - . - "false"^^ . - "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al."^^ . - "false"^^ . - . - . - "0000108"^^ . - "RPCEC00000423"^^ . - "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name="^^ . - . - "48439"^^ . - "cheminformatics" . - "ChemSpiderID" . - . - . - . - . - "genome" . - . - "NIF Standard Ontology: Chemical" . - . - . - "structure" . - . - "Genetic Code" . - . - "pictar-vert" . - . - . - "Database of Genomic Structural Variation - Study" . - "63"^^ . - . - "gramene.reference" . - . - "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1"^^ . - "https://glytoucan.org/Structures/Glycans/"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "http://jcggdb.jp/idb/jcggdb/$1"^^ . - . - "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID="^^ . - . - "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites."^^ . - . - . - . - . - . - "50018"^^ . - "Sunflower ontology" . - "co_338" . - . - . - . - . - . - "This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language."^^ . - "^\\w+$"^^ . - . - "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces."^^ . - . - . - "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries."^^ . - . - . - "fivestars" . - . - . - . - . - . - "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways."^^ . - . - "Phenoscape Publication" . - "ABE-0009634"^^ . - . - . - . - "http://lisanwanglab.org/DASHR/entry/$1"^^ . - "PTM" . - . - . - . - "https://senselab.med.yale.edu/ModelDB/ModelList?id=$1"^^ . - . - "alignedWith"^^ . - "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . - . - . - . - . - "00000099"^^ . - . - . - "gocc" . - . - "ontology" . - "Alayne Cuzick" . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_mol_"^^ . - "ontology" . - . - "seed" . - "http://lincsportal.ccs.miami.edu/cells/#/view/"^^ . - "small molecule" . - "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides."^^ . - "ontology and terminology" . - . - . - . -_:Nb25d6d0b2d8c4f4791e8dc90a749eff0 "pierre.sprumont@unifr.ch" . - . - "ENSG00000139618"^^ . - . - . - . - "http://senselab.med.yale.edu/ORDB/Data/$1"^^ . - . - . - . - . - . - . - . - "100"^^ . - "^4DN[A-Z]{2}[A-Z0-9]{7}$"^^ . - "Integrated Microbial Genomes Taxon" . - . - "false"^^ . - . - . - . - . - "clb" . - "database" . - "CL0192"^^ . - "http://www.bioassayontology.org/bao#BAO_"^^ . - . - . - . - "obo" . - "https://pathbank.org/view/"^^ . - . - . - . - "false"^^ . - . - "false"^^ . - "nlx.mol" . - "https://www.nsf.gov/awardsearch/showAward?AWD_ID="^^ . - . - "enviPath" . - . - . - "botany" . - . - "false"^^ . - . - "Genomic Distribution of structural Superfamilies" . - . - "GDS1234"^^ . - . - "http://www.genome.jp/dbget-bin/www_bget?cpd:$1"^^ . - "https://www.ncbi.nlm.nih.gov/research/cog/cog/$1"^^ . - . - "This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource."^^ . - . - . - . - . - "Leszek Vincent" . - . - "https://bioregistry.io/dbd:"^^ . - "false"^^ . - . - "https://sciflection.com/$1"^^ . - "conference" . - "dictybase" . - "sequence" . - "false"^^ . - . - . - . - . - "https://europepmc.org/article/ppr/"^^ . - "GM17027"^^ . - . - . - . - "medicine" . - . - "Physico-chemical process" . - "http://www.pharmgkb.org/gene/$1"^^ . - . - . - . - "lipid" . - . - . - . - . - . - "true"^^ . - . - . - "Jeffrey A. Detras" . - . - . - . - . - . - . - . - . - . - . - . - . - "https://mednet-communities.net/inn/db/ViewINN.aspx?i="^^ . - . - . - . - "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas."^^ . - . - . - . - "Open Data Commons for Traumatic Brain Injury" . - . - . - "^[A-Za-z]+$"^^ . - "protein" . - . - "myco.lepra" . - "GOLD genome" . - "functional genomics" . - . - . - "animal" . - "General Formal Ontology" . - . - . - "^SMP\\d+$"^^ . - . - "An ontology of Drosophila melanogaster anatomy."^^ . - "sequence" . - "The UniProt Tissue List is a controlled vocabulary of terms used to annotate biological tissues. It also contains cross-references to other ontologies where tissue types are specified."^^ . - . - "false"^^ . - . - . - . - "false"^^ . - "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region."^^ . - "https://openalex.org/"^^ . - . - "false"^^ . - . - . - . - "narcis" . - . - "Xenopus Anatomy Ontology" . - . - "BE0000048"^^ . - . - "http://purl.obolibrary.org/obo/TAO_$1"^^ . - . - . - . - "dna" . - . - . - . - "An organization" . - . - "Small Molecule Pathway Database" . - "^SIGNOR-\\d+$"^^ . - . - . - "http://sideeffects.embl.de/drugs/"^^ . - . - . - . - . - . - "PhylomeDB is a database of complete phylomes derived for different genomes within a specific taxonomic range. It provides alignments, phylogentic trees and tree-based orthology predictions for all encoded proteins."^^ . - "3447"^^ . - . -_:N8d54b1a6872b486aa13afa60bc27dd39 "helpdesk@cropontology-curationtool.org" . - . - . - "obo" . - . - "comparative genomics" . - . - "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references entities."^^ . - "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - "false"^^ . - . - . - "biomedical science" . - "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id="^^ . - "deficiency" . - . - . - . - . - . - . - . - . - . - "http://wheat.pw.usda.gov/report?class=gene;name="^^ . - "5621"^^ . - . - . - . - . - . - . - . - . - . - . - . - "Dan Brickley" . - . - . - . - . - . - "^[0-9]+$"^^ . - . - "reaction" . - . - . - . - . - "neurondb" . - . - "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym="^^ . - . - "Regulatory Elements Database for Drosophila" . - . - . - . - . - . - . - . - . - . - "MFO_0000001"^^ . - "physics" . - . - . - "0001009"^^ . - . - . - "dctypes" . - "^PM\\d{7}$"^^ . - "CHEMBL3307800"^^ . - "SM00015"^^ . - . -_:Na9570be4d12143dc8c7839a5cbde1d74 "WikiData Support" . - . - "animal genetics" . - . - . - _:N0e778a949ea94c0da609abeb109263f3 . - "Frédéric Bastian" . - . - . - "Database portal containing replicate experiments of different assays and samples"^^ . - "obo" . - "https://bioregistry.io/vipr:"^^ . - . - . - . - "^ENST\\d{11}$"^^ . - . - "Raymond Lee" . - "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment."^^ . - "ACHN"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . - . - . - "https://biopragmatics.github.io/providers/mba/"^^ . - "ontology" . - . - "European Searchable Tumour Line Database" . - . - . - . - . - . - "vsdb" . - . - "life science" . - "0000111"^^ . - . - "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" . - . - "RETIRED_EHDAA2" . - . - . - "knowledge and information systems" . - . - "3771992"^^ . - "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram."^^ . - . - "AHR"^^ . - . - "smtifahim@gmail.com" . - "institution" . - . - "15567"^^ . - "ALX-210-175"^^ . - "EB0170"^^ . - "Ramona Walls" . - . - . - . - . - "^\\d{7}$"^^ . - "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec=$1&Fields=All&ExactMatch=T"^^ . - . - "0002959"^^ . - "chemistry" . - . - . - "pathwaycommons" . - . - . - . - . - "Core Ontology for Biology and Biomedicine" . - . - . - . - "Semantic Web Context" . - . - "Liliana Andres Hernandez" . - . - . - . - "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1"^^ . - "ontology" . - . - . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . - . - "^\\d+$"^^ . - "Eukaryotic Genes" . - . - "false"^^ . - "life science" . - . - "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies."^^ . - . - . - "3639"^^ . - "pathway" . - . - "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view."^^ . - "GenInfo Identifier" . - . - . - . - . - . - . - "false"^^ . - "pdumdv" . - "http://pmb-bordeaux.fr/getdata/json/$1/datapackage?links=1"^^ . - . - "Glycan Naming and Subsumption Ontology" . - "Loggerhead nesting" . - . - . - . - . - . - . - . - . - . - . - . - . - "developmental biology" . - . - "corum" . - . - . - . - . - "creeas@gmail.com" . - . - . - "false"^^ . - . - . - "metabolomics" . - . - . - . - . - "rex" . - . - "http://purl.obolibrary.org/obo/WBls_$1"^^ . - "^\\d+$"^^ . - . - "pypi" . - . - . - "biodiversity" . - . - . - "http://opendata.inra.fr/ATOL/ATOL_$1"^^ . - "Ontology of Microbial Phenotypes" . - . - . - "ecology" . - . - . - "false"^^ . - "Agilent Probe" . - . - . - "^\\d{7}$"^^ . - . - . - . - "biomedical science" . - . - . - . - . - . - . - "metabolomics" . - . - "omop" . - "0000574"^^ . - . - . - . - . - . - . - . - . - . - "dsmz_mutz-id:ACC 291"^^ . - . - . - . - "300165/p13898_2106T"^^ . - . - . - . - "^AS\\d{6}$"^^ . - "ontology" . - "false"^^ . - . - "NLXFUNC covers terms for cognitive function."^^ . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/PO_"^^ . - . - . - "false"^^ . - . - . - . - "true"^^ . - "Wormbase Gene" . - "ExAC Transcript" . - . - . - . - "jcsd" . - "R. Burke Squires" . - . - . - . - . - . - "Research Resource Identification" . - . - . - . - . - . - . - "false"^^ . - . - "ontology" . - . - . - "pmdb" . - "https://biopragmatics.github.io/providers/schem/$1"^^ . - "Common Anatomy Reference Ontology" . - . - "KEGG Disease" . - . - . - . - . - "http://purl.obolibrary.org/obo/OGG_"^^ . - "ena" . - . - . - . - . - . - "https://cropontology.org/rdf/CO_327:$1"^^ . - "e.arnaud@cgiar.org" . - "proteins" . - "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"^^ . - "obo" . - . - . -_:N8d54b1a6872b486aa13afa60bc27dd39 "Crop Ontology Helpdesk" . - . - . - . - "ontology" . - . - . - . - . - "S000002493"^^ . - . - . - . - "co_370" . - . - "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . - . - . - . - . - . - "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics"^^ . - . - "http://purl.obolibrary.org/obo/FLU_$1"^^ . - . - . - "^[a-zA-Z0-9-]+$"^^ . - . - . - "Alan Wood's Pesticides" . - . - . - . - . - . - . - . - . - . - "csa" . - "apollosv" . - . - . - . - "http://purl.obolibrary.org/obo/MI_"^^ . - "obo" . - . - "1433C_TOBAC_1_252"^^ . - . - . - "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana."^^ . - "PharmGKB" . - . - "false"^^ . - "phenotype" . - . - . - "Tetrahymena Stock Center" . - . - "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"^^ . - "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id="^^ . - . - . - . - . - . - "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=$1"^^ . - "Pierre Grenon" . - . - "^\\d{7}$"^^ . - "civic.mpid" . - . - . - . - "http://purl.obolibrary.org/obo/LPT_$1"^^ . - "Orphanet Rare Disease Ontology" . - . - . - . - . - . - "Robert Druzinsky" . - "false"^^ . - . - . - "neurophysiology" . - "phenotype" . - . - . - "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"^^ . - . - . - . - . - . - "subject agnostic" . - "false"^^ . - . - . - "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders"^^ . - "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1"^^ . - . - "http://purl.obolibrary.org/obo/VSMO_"^^ . - "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."^^ . - . - "structure" . - "transcriptomics" . - . - . - . - . - "Compluyeast-2D-DB" . - . - . - . - "interaction" . - "Mathematical modeling ontology" . - "https://cgap.nci.nih.gov/Pathways/BioCarta/$1"^^ . - "^\\d+$"^^ . - . - . - . - . - "REACT" . - . - . - "false"^^ . - . - "ontology" . - . - "false"^^ . - . - . - "9002859"^^ . - . - "ontology" . - "false"^^ . -_:Na07a21f763194c74863294891350cae6 "WHO Collaborating Centre for Drug Statistics Methodology" . - . - "^\\d+$"^^ . - . - . - "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. "^^ . - . - "fao" . - . - . - . - "Satya S. Sahoo" . - . - "population dynamics" . - . - "false"^^ . - . - "AOPWiki" . - "Zebrafish developmental stages ontology" . - . - . - . - . - . - . - "small molecule" . - . - . - . - "phenotype" . - . - "Asset"^^ . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_func_$1"^^ . - "Database of RNA Junctions and Kissing loop Structures" . - . - "life science" . - . - "false"^^ . - . - "^\\d{7}$"^^ . - "https://cropontology.org/rdf/CO_323:"^^ . - . - . - . - "https://fungi.ensembl.org/id/$1"^^ . - . - . - "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1"^^ . - . - "00000532"^^ . - "trait" . - "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$"^^ . - "false"^^ . - . - . - . - . - . - "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa."^^ . - . - "ontology" . - . - . - . - "interaction" . - . - "http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml"^^ . - . - "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."^^ . - . - . - . - . - . - "ontology" . - . - "meetings" . - . - . - . - . - "data governance" . - "http://purl.obolibrary.org/obo/T4FS_$1"^^ . - . - "life science" . - "pathogen" . - "life science" . - "false"^^ . - "metanetx.compartment" . - "http://purl.obolibrary.org/obo/OGI_"^^ . - . - . - . - . - . - . - "ontology" . - . - . - "Human Endogenous Retrovirus Database" . - "https://bioregistry.io/rebase:"^^ . - . - "https://w3id.org/semapv/vocab/$1"^^ . - "Jim Balhoff" . - "Online Mendelian Inheritance in Animals" . - "Pfam Clans" . - . - . - "false"^^ . - "proteomics" . - . - . - . - . - "ERM00000044"^^ . - . - . - "https://bioregistry.io/metaregistry/go/"^^ . - . - "Gene Regulation Ontology" . - . - . - "https://www.ebi.ac.uk/ols4/ontologies/$1" . - "niaest" . - "0000858"^^ . - . - "https://www.xenbase.org/entry/"^^ . - . - . - "0002927"^^ . - "^\\d{8}$"^^ . - "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$"^^ . - . - . - . - . - "thesaurus" . - "http://purl.obolibrary.org/obo/OBA_$1"^^ . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - "0000001"^^ . - . - . - "bold.taxonomy" . - . - . - . - "TreeBASE" . - . - . - "hcao" . - . - . - . - "false"^^ . - . - . - "1cukA01"^^ . - . - "NCT00222573"^^ . - . - . - . - . - "gpcrnava" . - "EMAPA_RETIRED" . - . - "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production."^^ . - . - . - "yoh@dartmouth.edu" . - "ncbigene" . - "cell lines" . - "^\\d{7}$"^^ . - "obo" . - "obo" . - . - . - . - "An ontology describing the anatomical structures and characteristics of Porifera (sponges)"^^ . - . - . - . - "genome" . - "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively."^^ . - . - . - "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$"^^ . - . - "ontology" . - . - "https://lincs.hms.harvard.edu/db/sm/"^^ . - . - . - . - "Vilma Hualla Mamani" . - "proteomics" . - . - . - . - . - . - "Ontology for the Anatomy of the Insect SkeletoMuscular system" . - . - . - . - . - . - "th" . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/MmusDv_$1"^^ . - "ChemIDplus" . - "limore" . - "https://www.ebi.ac.uk/miriam/main/"^^ . - . - "SoyBase is a repository for curated genetics, genomics and related data resources for soybean."^^ . - . - "Fission Yeast Phenotype Ontology" . - . - . - . - . - . - "UniProt" . - . - . - "neurovault.collection" . - . - . - "ontology" . - "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)."^^ . - "false"^^ . - "http://emmo.info/emmo#EMMO_"^^ . - . - "false"^^ . - . - "tao" . - "chemical" . - . - . - . - "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."^^ . - "structure" . - "18030"^^ . - . - . - . - . - . - . - . - . - . - "MGnify Analysis" . - "http://www.proteinmodelportal.org/query/uniprot/"^^ . - . - "sweetrealm" . - . - . - . - . - . - . - "false"^^ . - "eropmoscow" . - "Silvio Peroni" . - . - . - "omrse" . - . - . - . - "conferences" . - . - . - . - "^C\\d+$"^^ . - . - . - . - "Current Dental Terminology" . - . - . - . - "bibliometrics" . - "false"^^ . - . - . - "Human Dephosphorylation Database" . - . - "^GPM\\d+$"^^ . - "msig" . - "Ximbio" . - "CLO" . - . - . - . - . - . - . - . - "Open Biomedical Annotations" . - . - "Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output."^^ . - . - . - . - "^\\d+$"^^ . - "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API."^^ . - . - "http://purl.obolibrary.org/obo/OMP_$1"^^ . - "false"^^ . - . - . - . - . - "obo" . - . - "data management" . - "^\\d+$"^^ . - . - . - "Dr. Alpha Tom Kodamullil" . - . - . - "http://www.wikidata.org/entity/$1" . - . - . - . - "4dn.replicate" . - "Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms."^^ . - . - . - . - . - "biosimulations" . - "https://bioregistry.io/ecoliwiki:"^^ . - "false"^^ . - "https://go.drugbank.com/salts/$1"^^ . - . - . - . - . - . - . - . - "https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1"^^ . - "funcbase.yeast" . - . - . - "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an="^^ . - . - . - . - . - . - . - . - . - "ximbio" . - . - . - . - "ENSGT00550000074763"^^ . - "chictr" . - . - "metascience" . - . - . - . - . - . - "A database of fly neurons and pathways with an associated 3D viewer."^^ . - . - "bioinformatics" . - . - . - . - "^\\d+$"^^ . - "Francesco Vitali" . - . - "ontology" . - . - . - "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."^^ . - "Gene Expression Analysis Resource" . - "bgee@sib.swiss" . - "https://www.ebi.ac.uk/ena/browser/view/"^^ . - . - . - . - "^\\d{7}$"^^ . - . - "Eschmeyer's Catalog of Fishes" . - . - "hasDbXref"^^ . - "ontology" . - "false"^^ . - "false"^^ . - . - . - . - . - . - "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-"^^ . - . - "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies."^^ . - "https://www.enzolifesciences.com/"^^ . - . - . - . - . - "https://biopragmatics.github.io/providers/scomp/"^^ . - . - . - "https://bioregistry.io/metaregistry/biocontext/$1" . - . - "ReviewVersion"^^ . - . - . - . - . - . - . - . - "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC."^^ . - . - "false"^^ . - . - . - . - . - . - "biomedical science" . - . - . - . - . - . - "Animal natural history and life history" . - . - . - . - . - . - . - . - . - . - _:N3f1cf0da58784e5eb360502160781559 . - . - . - . - "http://n2t.net/ark:"^^ . - . - . - "preclinical studies" . - "ramirez@macn.gov.ar" . - "The Pharmacogene Variation (PharmVar) Consortium is the new home for PGx gene nomenclature serving as a centralized ‘Next-Generation’ Pharmacogene Variation data repository. The major focus of PharmVar is to catalogue allelic variation of genes impacting drug metabolism, disposition and response and provide a unifying designation system (nomenclature) for the global pharmacogenetic/genomic community. Efforts are synchronized between PharmVar, the Pharmacogenomic KnowledgeBase, and the Clinical Pharmacogenetic Implementation Consortium."^^ . - . - . - "0005926"^^ . - "ontology" . - . - "ontology" . - . - . - "regulation" . - . - . - . - . - . - "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . - "http://aims.fao.org/aos/agrovoc/c_$1"^^ . - . - . - "biology" . - "http://purl.obolibrary.org/obo/PLANP_"^^ . -_:N11a4fc5962bd4af29b75e3ad1cf69ed3 "NLM Customer Service" . - . - . - . - . - . - "GRIN URL" . - . - "agriculture" . - "ICD10" . - "mutant" . - "^\\d+$"^^ . - . - "Mark Engelstad" . - . - . - "http://www.ebi.ac.uk/astd/geneview.html?acc="^^ . - "A vocabulary for annotating vocabulary descriptions" . - "wb.rnai" . - . - . - "http://purl.obolibrary.org/obo/OVAE_$1"^^ . - . - "https://www.ncbi.nlm.nih.gov/genome/"^^ . - . - "saddan"^^ . - "ALA"^^ . - . - . - . - "https://w3id.org/babelon/$1"^^ . - . - . - "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid="^^ . - . - "babelon" . - . - . - . - "Teleost Anatomy Ontology" . - . - "http://purl.obolibrary.org/obo/CHMO_"^^ . - . - . - "^[0-9]{12}$"^^ . - "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."^^ . - "http://purl.obolibrary.org/obo/SBO_"^^ . - . - . - . - . - . - "cell biology" . - . - . - "ClinGen Allele Registry" . - "http://sabiork.h-its.org/newSearch?q=ecnumber:$1"^^ . - "lipidbank" . - . - "http://purl.obolibrary.org/obo/EMAPA_$1"^^ . - "false"^^ . - . - "structure" . - . - . - . - "Gene"^^ . - . - "^\\w+$"^^ . - . - "Network Data Exchange" . - . - "biomedical science" . - . - . - . - . - "RNA Modification Database" . - . - . - "Marc_Ciriello@hms.harvard.edu" . - . - . - . - . - "http://www.iclc.it/details/det_list.php?line_id="^^ . -_:N9c2d149a8169411dafddcffb9f24523d "Allen Institute for Brain Science" . - . - . - "Ontologies provide a common platform of controlled vocabulary for researchers who need to share information across a particular domain, inclusive of machine-interpretable definitions of basic concepts in the domain and relations among them. The need for ontologies that provide a systematic arrangement of available data and allow cross talk across various related domains is gaining momentum. In this backdrop, we have developed a comprehensive ontology on primary and established cell lines-both normal and pathologic. It covers around 400 cell lines. This ontology has been built to include the major domains in the field of biology like anatomy, bio-molecules, chemicals and drugs, pathological conditions and genetic variations around the cell lines. An extensive network of relations has been built across these concepts to enable different combinations of queries. The ontology covers all cell lines from major sources like ATCC, DSMZ, ECACC, ICLC etc. and is built in OWL format."^^ . - "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database."^^ . - . - "RepeatsDB Structure" . - "comparative neurobiology" . - "^\\d{7}$"^^ . - . - . - . - . - . - "scopus.work" . - . - . - . - . - . - . - . - . - "enzyme" . - . - "wdduncan@gmail.com" . - . - . - "Matt Yoder" . - . - . - . - "protein" . - . - . - . - "http://www.cathdb.info/cathnode/"^^ . - "DrugBank" . - . - "biopixie" . - "bioinformatics" . - "pathway" . - . - . - "Barley ontology" . - . - . - . - "laia.subirats@gmail.com" . - "immunology" . - "CTRI/2023/04/052053"^^ . - . - . - "200282"^^ . - . - . - . - "AURKA"^^ . - . - . - "^\\d+$"^^ . - . - . - "false"^^ . - . - . - "TA_H3"^^ . - . - . - . - "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm="^^ . - "xuo" . - "^\\w+$"^^ . - . - . - . - . - "infectious disease medicine" . - . - . - . - "http://purl.obolibrary.org/obo/PR_"^^ . - "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites."^^ . - "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation."^^ . - . - . - "life science" . - . - "lgai.cede" . - "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid="^^ . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/SOPHARM_"^^ . - . - "latitude"^^ . - . - . - "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas="^^ . - . - . - . - . - "false"^^ . - . - "ontology" . - . - . - "http://purl.obolibrary.org/obo/ENVO_"^^ . - "50-00-0"^^ . - . - "http://purl.obolibrary.org/obo/PdumDv_"^^ . - . - "https://drks.de/search/en/trial/$1"^^ . - "ICDO" . - . - . - . - . - "http://sabiork.h-its.org/reacdetails.jsp?reactid="^^ . - "glida.ligand" . - . - "animal husbandry" . - . - . - . - "biology" . - . - "micro" . - . - . - . - "ontology" . - . - "bionumbers" . - "http://www.cellresource.cn/cellsearch.aspx?sc=1&where="^^ . - "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec="^^ . - . - . - "402558626"^^ . - "RoleInTime"^^ . - . - . - "KEGG Genome is a collection of organisms whose genomes have been completely sequenced."^^ . - "The bioRxiv is a preprint server for biology"^^ . - "^\\S+$"^^ . - "^[a-zA-Z0-9 +#'*]+$"^^ . - . - _:Nabf1e8c34e584cfa90b48e1410e90596 . - "ctd.disease" . - "https://www.hipsci.org/lines/#/lines/"^^ . - "reagent" . - . - . - . - . - "chembank" . - . - . - "life science" . - "mutation" . - . - . - . - . - "MetaboLights Compound" . - . - "p3db.site" . - . - . - "emolecules" . - . - "The Ecosystem Ontology" . - . - "ontology" . - . - . - "http://tolweb.org/"^^ . - "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015"^^ . - "^\\d{7}$"^^ . - "^\\d{7}$"^^ . - . - "^\\d+$"^^ . - . - "false"^^ . - "tgma" . - "Cell line collections (Providers)"^^ . - . - . - . - . - "YRC PDR" . - "1801.012"^^ . - "molecular chemistry" . - . - "citexplore" . - . - . - . - . - . - "Bambara groundnut ontology" . - "Cell line databases/resources"^^ . - . - "chembl.compound" . - . - "cellrepo" . - . - "0000210"^^ . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1"^^ . - "lagonzalezmo@unal.edu.co" . - "c4o" . - . - . - . - "Bob Thacker" . - "1"^^ . - "grin" . - "ontology" . - . - . - "https://www.rrrc.us/Strain/?x=$1"^^ . - . - . - "https://www.brenda-enzymes.org/php/result_flat.php4?ecno=$1"^^ . - . - . - . - . - . - . - "http://multicellds.org/MultiCellDB/"^^ . - "false"^^ . - . - "0000111"^^ . - . - . - . - . - "MultiCellDS Digital snapshot" . - "Scopus Work" . - . - . - . - "^(T0\\d+|\\w{3,5})$"^^ . - . - . - . - . - . - "uniprot.database" . - . - "classification" . - "https://units-of-measurement.org/"^^ . - "data_1664"^^ . - . - "https://www.google.com/patents/$1"^^ . - "http://purl.obolibrary.org/obo/CARO_"^^ . - . - "Pearl millet Trait Dictionary in template 5 - ICRISAT/INERA - April 2016"^^ . - . - "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$"^^ . - "https://bioregistry.io/cabri:"^^ . - . - "https://www.ebi.ac.uk/interpro/entry/pfam/"^^ . - "https://civicdb.org/links/assertions/"^^ . - "The set of prefixes used in the Cellosaurus resource" . - . - . - . - "4544"^^ . - "uniprot.arba" . - . - "scop.sunid" . - "virology" . - . - "false"^^ . - . - "Neural ElectroMagnetic Ontology" . - . - . - . - . - . - "false"^^ . - "^\\w+$"^^ . - "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases"^^ . - . - "vido" . - "MarFun" . - "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."^^ . - . - "rnao" . - "Provisional Cell Ontology" . - "1004" . - "hssp" . - "^\\d+$"^^ . - "literalForm"^^ . - "structure" . - . - . - . - . - . - . - "ligandbox" . - . - "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML."^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/NCBITaxon_$1"^^ . - "uniprot.ptm" . - . - . - . - . - . - . - . - . - . - . - "suzia@stanford.edu" . - "false"^^ . - . - . - . - . - "REFSEQ_PROT" . - . - . - "sequence" . - . - "chemistry" . - . - "false"^^ . - . - . - . - "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html"^^ . - . -_:N4e049b627b3a4edaa7e72a9425ccc457 "Jonathan Bard" . - . - . - . - . - "https://thebiogrid.org/interaction/"^^ . - . - "SIDER Side Effect" . - . - . - "E-cyanobacterium model" . - "false"^^ . - . - "http://purl.obolibrary.org/obo/MA_"^^ . - . - . - "developmental biology" . - . - . - "Laurel Cooper" . - . - . - . - . - . - . - . - . - "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id="^^ . - "asin" . - . - . - "genomics" . - . - "Tobias Schulze" . - . - . - . - . - "IUPHAR family" . - "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID="^^ . - . - . - "registry" . - "Genetic and Rare Diseases Information Center" . - . - . - "The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces."^^ . - "life science" . - . - . - . - "genome" . - . - "NLXANAT covers anatomy terms. Almost all terms are also in Uberon."^^ . - . - "agriculture" . - "^\\d+$"^^ . - . - . - "lynn.schriml@gmail.com" . - . - "PeptideAtlas" . - . - . - "https://smid-db.org/smid/"^^ . - . - "bila" . - . - . - . - . - "jason.stajich@ucr.edu" . - . - . - . - "cheminformatics" . - "NIF Standard Ontology: Digital Resources" . - "http://terminology.hl7.org/CodeSystem/v2-$1"^^ . - "http://purl.obolibrary.org/obo/ONE_"^^ . - . - "http://purl.obolibrary.org/obo/PO_$1"^^ . - "http://purl.obolibrary.org/obo/CVDO_$1"^^ . - . - . - . - . - . - "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools."^^ . - "Kyoto Stock Center" . - . - . - . - . - . - . - . - . - "uminctr" . - . - "10001-101"^^ . - "The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response."^^ . - "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC="^^ . - "1915"^^ . - . - . - "Maize Trait Dictionary in template 5 - CIMMYT- September 2016"^^ . - "stitch" . - "drduke" . - . - "The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample."^^ . - . - "biomedical science" . - . - "structure" . - . - "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"^^ . - . - . - . - . - "wd" . - . - . - . - . - "http://www.ifomis.org/bfo/1.1/snap#$1"^^ . - "^\\d+$"^^ . - . - "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source."^^ . - "false"^^ . - . - "gabi" . - "Online Mendelian Inheritance in Man" . - "DB-0174" . - . - . - . - . - "ontology" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "genetic" . - . - . - . - . - "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"^^ . - . - . - . - . - . - "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."^^ . - . - . - . - . - . - "https://www.ebi.ac.uk/gxa/genes/"^^ . - . - . - "http://www.phosphosite.org/siteAction.do?id=$1"^^ . - . - "false"^^ . - . - . - "Rat Strain Ontology" . - . - "^\\d{7}$"^^ . - "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources."^^ . - "https://www.ncbi.nlm.nih.gov/bioproject/?term="^^ . - "false"^^ . - "PharmGKB Drug" . - . - . -_:Na07a21f763194c74863294891350cae6 "whocc@fhi.no" . - . - . - . - . - . - "phylogenetics" . - . - "dna" . - "EU Clinical Trials" . - . - . - "^(VT)?\\d{7}$"^^ . - "false"^^ . - . - . - . - . - "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . - . - "https://www.ebi.ac.uk/interpro/set/pfam/"^^ . - . - . - "Jacqueline Campbell" . - . - "TP53"^^ . - . - "https://scicrunch.org/resolver/RRID:IMSR_TAC_$1"^^ . - . - "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1"^^ . - . - . - . - "1351341"^^ . - . - . - "http://www.w3.org/ns/activitystreams#$1"^^ . - . - "farming systems research" . - . - "true"^^ . - . - "protein" . - . - . - . - . - . - . - . - "protein" . - . - "http://purl.obolibrary.org/obo/HOM_$1"^^ . - . - . - . - "SIDER Drug" . - "http://purl.obolibrary.org/obo/CTO_"^^ . - "pathways" . - "https://www.phenxtoolkit.org/protocols/view/"^^ . - . - . - . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - "https://civicdb.org/links/sources/"^^ . - . - "Andreas Ruepp" . - "ontology" . - . - . - . - "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"^^ . - . - "This document describes a vocabulary for annotating descriptions of vocabularies with examples and usage notes."^^ . - . - "health science" . - "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:"^^ . - "^\\d{7}$"^^ . - "^\\d+$"^^ . - "pso" . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "Southwestern Environmental Information Network" . - . - "0000194"^^ . - . - . - . - "epidemiology" . - . - "Fetal Calf Serum-Free Database" . - "Encyclopedia of DNA Elements" . - . - . - . - . - . - . - "NLXOEN" . - "structure" . - . - "^\\d{7}$"^^ . - . - . - "false"^^ . - . - . - . - . - "https://sed-ml.org/urns.html#format:$1"^^ . - "medicine" . - . - . - "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques."^^ . - "8497"^^ . - . - . - . - . - "Legacy site for IETF RFC proposals"^^ . - "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies."^^ . - "version control" . - . - "kegg.drug" . - . - . - "obo" . - . - . - . - "M58335"^^ . - . - "Agronomy Vocabulary" . - . - . - "Protein Ensemble Database ensemble" . - . - "extraction_set"^^ . - . - "http://scop.berkeley.edu/sccs=$1"^^ . - . - . - "Google Scholar Researcher" . - . - . - . - . - . - . - . - "^A\\d+$"^^ . - . - "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling."^^ . - "ontology" . - . - "rebase" . - . - . - "^\\d{6}$"^^ . - . - "https://www.findacode.com/code.php?set=ICD10PCS&c=$1"^^ . - "interaction" . - . - . - . - . - . - "https://aopwiki.org/events/$1"^^ . - "Katy Börner" . - "genomics" . - . - "cido" . - . - "false"^^ . - "^\\d+$"^^ . - . - . - . - "BioSimulators" . - "0000389"^^ . - "false"^^ . - "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"^^ . - . - . - "subject agnostic" . - "davidos@ebi.ac.uk" . - . - . - . - . - . - "ChEBI Integrated Role Ontology" . - "^[0-9]+$"^^ . - "funding agencies" . - . - "http://www.ebi.ac.uk/efo/EFO_$1"^^ . - . - . - . - . - . - "developmental biology" . - . - "Plant Stress Ontology" . - . - . - "PhosphoSite Site Group" . - "dbvar.studies" . - . - . - . - . - "https://www.pgscatalog.org/pgs/$1"^^ . - . - . - . - . - . - "systems biology" . - . - "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1"^^ . - "true"^^ . - "classification" . - "https://cropontology.org/rdf/CO_359:$1"^^ . - . - . - . - "false"^^ . - . - . - . - . - "Resource Description Framework" . - . - . - . - . - "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites)."^^ . - "worms" . - . - . - . - . - . - . - "BibliographicRecord"^^ . - . - "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$"^^ . - . - . - . - . - "NeuroMorpho" . - "HEPRO is an ontology of informational entities and processes related to health procedures and health activities."^^ . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "chemistry" . - . - . - . - . - . - . - "http://www.iclc.it/details/det_list.php?line_id=$1"^^ . - . - "10004892"^^ . - . - . - . - . - . - . - "Jean-Luc Jannink" . - "0107180"^^ . - . - . - . - . - "26753"^^ . - "life science" . - . - . - . - . - . - . - . - . - "life science" . - . - . - "true"^^ . - . - "https://massbank.jp/RecordDisplay?id="^^ . - "adw" . - . - . - "Fababean ontology" . - . - "http://www.genome.jp/dbget-bin/www_bget?ec:$1"^^ . - "false"^^ . - . - . - . - . - . - "an ontology for vector surveillance and management, focusing on arthropod vectors and vector-borne pathogens with relevance to humans or domestic animals, and with special emphasis on content to support operational activities through inclusion in databases, data management systems, or decision support systems."^^ . - . - . - . - . - . - . - "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum."^^ . - . - . - "Terminologia Embryologica" . - "wb" . - . - "https://www.confident-conference.org/index.php/Event:$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "ppdb" . - . - "aging" . - . - "anatomy" . - "NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO)."^^ . - . - . - . - . - . - . - "nmrcv" . - . - "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results."^^ . - "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information."^^ . - "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining."^^ . - "classification" . - . - . - . - . - "ontology" . - . - "http://arabidopsis.info/StockInfo?NASC_id=$1"^^ . - . - . - "PubMed" . - . - . - . - "genetics" . - "968"^^ . - . - . - "false"^^ . - . - "^ITMCTR\\d+$"^^ . - . - . - . - "cosmic.cell" . - . - . - . - "http://purl.org/spar/c4o/"^^ . - . - . - . - . - . - . - . - . -_:Nf7e91c76916647ba99dee0cb63cf2da8 "helpdesk@cropontology-curationtool.org" . - . - . - "ProteomeXchange" . - . - "^DBCAT\\d+$"^^ . - . - "^[A-Za-z0-9]+$"^^ . - . - "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . - . - "obo" . - . - . - . - "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected."^^ . - . - "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/"^^ . - "life science" . - "1000001"^^ . - . - . - . - . - . - . - "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains."^^ . - . - . - . - _:Ne15f697bb7944ad0802de233570457b3 . - . - "neuroscience" . - . - "bioinformatics" . - . - "jws" . - . - "^\\d{7}$"^^ . - . - "pubchem.cell" . - . - "bioinformatics" . - "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele"^^ . - . - "MESH" . - . - "David Brodbelt" . - . - "Catalogue of Life in Taiwan" . - . - . - . - . - . - . - "structure" . - . - . - "Vertebrate trait ontology" . - "3D Metabolites" . - "image" . - . - . - . - "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature="^^ . - "Signaling Pathways Project" . - "life science" . - "false"^^ . - . - . - "https://www.confident-conference.org/index.php/Event:"^^ . - . - . - "obo" . - . - "^\\w{5}\\.\\d{2}\\..*$"^^ . - "schem" . - "LG Chemical Entity Detection Dataset (LGCEDe)" . - . - . - "ChecklistBank" . - "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . - "http://purl.obolibrary.org/obo/MFMO_"^^ . - "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1"^^ . - "biomedical science" . - . - "Registry of Research Data Repositories" . - "true"^^ . - . - . - "https://genelab-data.ndc.nasa.gov/genelab/accession/$1"^^ . - "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon."^^ . - . - . - . - . - "refseq" . - . - . - . - "oct 2016"^^ . - "SED-ML data format" . - "Amelanchier laevis"^^ . - "stoeckrt@pcbi.upenn.edu" . - . - "Unimod protein modification database for mass spectrometry" . - . - "ICD-10" . - . - . - "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115=$1"^^ . - . - "false"^^ . - "HEX1"^^ . - . - "alzforum.mutation" . - . - . - "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md"^^ . - . - . - . - . - "agricola" . - . - "life science" . - . - . - . - . - "anatomy" . - . - "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " . - . - "Protein Affinity Reagents" . - . - . - . - . - "violinID" . - . - . - . - . - . - "computer science" . - "Reagent Ontology" . - . - "0001"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/books/$1"^^ . - "http://purl.enanomapper.org/onto/ENM_"^^ . - . - . - . - "0000003"^^ . - . - . - . - "VIPERdb" . - . - . - . - . - . - "A hierarchical classification of congenital heart disease "^^ . - . - "Flybase Cell Line" . - . - "Gemeinsame Normdatei" . - . - "https://www.datanator.info/metabolite/$1"^^ . - . - "false"^^ . - "Contributor Role Ontology" . - . - . - . - "^\\d{7}$"^^ . - . - "functional genomics" . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "oban" . - . - . - . - "omo" . - . - . - . - "^N[0-9]{10}$"^^ . - . - . - "http://yeastrc.org/pdr/viewProtein.do?id="^^ . -_:Nd9b3195f68dc45c99c9355f67278f11b "usha@molecularconnections.com" . - "http://data.europa.eu/89h/$1"^^ . - "supfam" . - "The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It contains detailed information on licensing and formats as well as software applications themselves, mainly (but not limited) to the bioinformatics community."^^ . - . - "false"^^ . - "seed.compound" . - . - . - . - . - "^\\d+(\\w+)?$"^^ . - . - . - . - . - . - . - . - . - . - "https://www.enzolifesciences.com/$1"^^ . - . - . - . - "comparative genomics" . - "preclinical studies" . - "^\\d+$"^^ . - "owl" . - . - . - "http://darcsite.genzentrum.lmu.de/darc/view.php?id="^^ . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - "embryonic stem cell" . - . - . - "bdgp.est" . - "ricegap" . - . - . - "https://cropontology.org/rdf/CO_365:"^^ . - "E5.11.2.0.0.0.4"^^ . - . - . - . - "life science" . - "osa-miR446"^^ . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id="^^ . - "6b1"^^ . - . - "http://purl.obolibrary.org/obo/PHIPO_"^^ . - . - . - . - "http://purl.obolibrary.org/obo/AAO_"^^ . - "htn" . - . - "http://bigg.ucsd.edu/compartments/$1"^^ . - . - . - . - . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/sao"^^ . - . - "vsmo" . - "http://purl.obolibrary.org/obo/EPIO_"^^ . - "obo" . - . - . - "david.sehnal@gmail.com" . - . - . - "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"^^ . - "58788"^^ . - "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1"^^ . - . - . - . - . - . - . - "human" . - . - . - . - . - . - "protein" . - "SwissProt" . - . - "FHIR External Terminologies" . - "j.harry.caufield@gmail.com" . - . - . - . - "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections."^^ . - . - "EDAM Operation" . - "false"^^ . - . - . - . - . - . - . - "https://foodb.ca/foods/"^^ . - . - "phenotype" . - "false"^^ . - . - . - . - . - "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology"^^ . - _:N5d7232cb5c7e4b6dbfd3e210772aaf35 . - . - . - "UMIN000049383"^^ . - "Resources mentioned in \"Sharing biological data: why, when, and how\"" . - . - . - "1000"^^ . - . - "metabolomics" . - . - "A web-developer centric archive of prefixes and URI prefixes" . - "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"^^ . - "The PubChem Classification Browser allows you to browse the distribution of PubChem data among nodes in the hierarchy of interest, thereby providing an aggregate view of PubChem data. It also allows you to search for PubChem records annotated with the desired hierarchy/term, providing a powerful way to quickly find the subset of PubChem records."^^ . - . - . - . - "mutant" . - "false"^^ . - . - . - . - "0000449"^^ . - "taxonomy" . - "^\\d{6}$"^^ . - . - . - "DiscoverX cell line products" . - "12929"^^ . - . - . - "Meng LIU" . - . - . - . - . - . - . - "pathway" . - . - . - "Five Stars of Online Research Articles Ontology" . - . - "Pierre-Marie Allard" . - . - "life science" . - . - "vega" . - "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_"^^ . - "protein" . - "false"^^ . - . - . - . - "http://cellimagelibrary.org/images/"^^ . - "germline" . - . - "Tissue List" . - . - . - "fbdv" . - . - . - . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - "diseases" . - "UP" . - "PerkinElmer cell line collection" . - . - . - "false"^^ . - . - "165a"^^ . - "true"^^ . - . - "disdriv" . - . - . - "mge" . - _:N09955625048e48879dec33c0f3843916 . - . - . - . - . - "false"^^ . - "ccds" . - "virsi1909"^^ . - . - "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015"^^ . - . - . - "flybrain.ndb" . - . - . - . - . - "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1"^^ . - . - "pathway" . - . - . - . - "Mungbean ontology" . - "Gene Expression Ontology" . - . - "OBO in OWL" . - "http://mods.rna.albany.edu/mods/modifications/view/"^^ . - . - . - "jakkbl@gmail.com" . - "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'."^^ . - . - . - . - "life science" . - . - . - "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research."^^ . - "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker."^^ . - "protein" . - . - . - . - "^[A-Za-z0-9\\-\\_]+$"^^ . - . - . - . - . - "International Classification of Diseases, 9th Revision, Clinical Modification" . - . - . - . - . - "KEGG Module" . - . - . - . - . - "^\\d+$"^^ . - "matthias.samwald@meduniwien.ac.at" . - "biomedical science" . - . - . - "false"^^ . - . - . - . - . - "Animal Genome Size Database" . - . - "http://purl.obolibrary.org/obo/MIRNAO_"^^ . - "developmental biology" . - . - . - . - . - . - "^\\d{4}$"^^ . - . - "obo" . - . - . - . - "pid.pathway" . - "Shapes Constraint Language" . - . - "false"^^ . - . - . - "blast" . - . - "MMP3312982.2"^^ . - "090201"^^ . - "Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]"^^ . - . - "Models developed with the Virtual Cell (VCell) software prorgam."^^ . - . - . - "456789"^^ . - "pato" . - . - "biology" . - . - "false"^^ . - "angiology" . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "structure" . - "EDI_244000"^^ . - . - "https://www.kazusa.or.jp/rouge/gfpage/"^^ . - . -_:N4b6f177c38fa4e3db98464cdf5ad524a "NLM Customer Service" . - . - "false"^^ . - "rbca.jackson@gmail.com" . - "google.patent" . - . - . - . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - . - . - "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite."^^ . - "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac="^^ . - "81944ba1-81d0-436e-8552-33d77a27834b"^^ . - "Search the world's most comprehensive index of full-text books."^^ . - . - . - . - . - . - . - "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index=$1&view=expanded"^^ . - "Identifiers for relationships between proteins and complexes, along with their type and provenance"^^ . - "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=$1"^^ . - . - "rdo" . - "false"^^ . - . - . - . - "728"^^ . - . - . - . - . - . - "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"^^ . - . - . - . - "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1"^^ . - "^GPST[0-9]{6}$"^^ . - . - "earth science" . - . - "anatomy" . - . - "mbrochhausen@gmail.com" . - . - . - . - "http://purl.obolibrary.org/obo/IDOMAL_$1"^^ . - . - "phs000768.v2.p1"^^ . - "4900"^^ . - . - . - . - "ontology" . - "http://purl.obolibrary.org/obo/OHPI_$1"^^ . - . - "https://commonchemistry.cas.org/detail?cas_rn="^^ . - . - "ped.ensemble" . - . - "LinkML" . - "https://hpscreg.eu/cell-line/$1"^^ . - . - . - . - . - . - "ICD10WHO" . - . - . - "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception."^^ . - . - "false"^^ . - . - . - . - "controlled term" . - "long-finned-pilot-whale"^^ . - . - . - "otol" . - . - . - . - "Redistributor of bilogics and biomedical supplies"^^ . - . - "An application ontology designed to annotate next-generation sequencing experiments performed on RNA."^^ . - . - . - . - . - "AAA35559"^^ . - "false"^^ . - . - . - . - . - . - "NCBI Genome" . - . - . - "https://sed-ml.org/urns.html#language:$1"^^ . - "SNOMEDCT_US_2022_12_31" . - . - "^\\d+$"^^ . - . - "^MCDS_C_[a-zA-Z0-9]{1,10}$"^^ . - "lncipedia" . - "https://odc-sci.org/data/$1"^^ . - "regulation" . - "Genome assembly database - RefSeq accessions" . - . - . - . - "12"^^ . - . - . - "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop="^^ . - . - . - . - . - . - . - "anatomy" . - . - . - "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine."^^ . - . - . - . - "has reviewer" . - . - . - . - "cellular" . - . - . - . - . - . - . - . - "^\\d+$"^^ . - "^(\\w+)?\\d+$"^^ . - "tair.protein" . - . - . - "obo" . - . - "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."^^ . - "gene" . - "false"^^ . - . - . - . - "namerxn" . - "^\\d+$"^^ . - . - . - . - "NIF Cell" . - . - "autdb" . - . - . - "peteremidford@yahoo.com" . - . - . - . - . - . - . - . - "doi" . - "FlowRepository" . - "Unified Phenotype Ontology" . - . - . - "Ontology about the gross anatomy of the C. elegans"^^ . - . - . - "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases."^^ . - "^DBSALT\\d{6}$"^^ . - . - "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets."^^ . - "http://www.gramene.org/db/ontology/search?id=GRO:$1"^^ . - . - . - . - "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$1&data_type=norm2&results=yes"^^ . - "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA)."^^ . - "false"^^ . - "PathBank" . - . - "http://www.knapsackfamily.com/knapsack_core/information.php?word="^^ . - . - . - "0002533"^^ . - . - . - "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information."^^ . - . - "p3db.protein" . - . - . - "https://panoramaweb.org/$1.url"^^ . - "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id="^^ . - . -_:N93983d18fcdf409b8daffd2813858a1c "Crop Ontology Helpdesk" . - . - "structural biology" . - . - "ncbibook" . - . - . - "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io)."^^ . - . - "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1"^^ . - . - "TCTR20230429001"^^ . - . - . - . - . - "http://www.scopus.com/record/display.url?origin=inward&eid=$1"^^ . - . - "SCC111"^^ . - "pubchem.compound" . - "https://www.pharmvar.org/gene/$1"^^ . - "nlx.sub" . - . - . - "pharmacology" . - . - . - . - "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?query=$1&db=HOVERGEN"^^ . - . - "false"^^ . - . - "5fde96bdc5f1aa9ff0cce18a"^^ . - . - "^ACH-\\d+$"^^ . - . - . - . - . - "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1"^^ . - . - "uniprot.isoform" . - . - . - . - "http://www.t3db.org/toxins/$1"^^ . - . - . - "https://civicdb.org/links/variant/$1"^^ . - . - "obo" . - "U49845"^^ . - . - . - "rscheuermann@jcvi.org" . - "registry" . - "^[A-Za-z]+$"^^ . - . - . - "https://www.kazusa.or.jp/rouge/gfpage/$1"^^ . - . - . - "PDC000351"^^ . - . - . - "MetaNetX compartment" . - . - "ontology" . - "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1"^^ . - . - "false"^^ . - . - . - . - . - "hsapdv" . - "http://purl.obolibrary.org/obo/FOVT_$1"^^ . - "http://purl.obolibrary.org/obo/RoleO_$1"^^ . - "false"^^ . - . - "false"^^ . - . - "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id="^^ . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1"^^ . - "biomedical science" . - "mtbd" . - "sharesAuthorInstitutionWith"^^ . - "181" . - . - . - . - . - . - "^[A-Za-z_0-9]+$"^^ . - "MeSH 2012" . - . - _:Nf7642f249190476898c7f16d563ba940 . - "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases."^^ . - . - . - . - "health science" . - "https://bioregistry.io/prints:"^^ . - . - . - "human" . - . - . - . - "^KCT\\d+$"^^ . - . - . - . - . - . - . - . - "false"^^ . - "ratmap" . - "trnadbce" . - . - . - . - . - "https://www.arraymap.org/pgx:"^^ . - "https://flybase.org/reports/FBrf"^^ . - "PROSITE" . - . - . - "false"^^ . - . - "karr@mssm.edu" . - "BiGG Model" . - . - "xenopus" . - . - . - . - . - . - "wgs84" . - "afo" . -_:N3f1cf0da58784e5eb360502160781559 "Patricia Brooks" . - . - . - . - "snctp" . - . - "http://cgsc.biology.yale.edu/Site.php?ID=$1"^^ . - . - . - "reaction" . - . - . - . - "eco" . - . - . - "false"^^ . - "false"^^ . - "geneotype" . - "https://www.rrrc.us/Strain/?x="^^ . - . - "multicellds.cell_line" . - "true"^^ . - "false"^^ . - . - . - . - "https://bioregistry.io/nsrrc:"^^ . - . - . - . - . - "obo" . - "gene expression" . - . - "IID00001"^^ . - "^A\\d+$"^^ . - "protein" . - "genetic engineering" . - . - . - . - "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1"^^ . - "^ISRCTN\\d+$"^^ . - . - . - . -_:N324112f3c63245ab8f6b46586714a1c9 "yingqin@rti.org" . - "Plant Phenology Ontology" . - . - . - . - . - "life science" . - . - . - . - "Darren Natale" . - . - . - . - "sequence" . - "Annika Jahnke-Bornemann" . - . - "PTHR12345"^^ . - . - . - . - _:Nd772a1887b1e4e43ab904ab8cad89d95 . - "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components."^^ . - . - . - . - . - "0000001"^^ . - . - "genome" . - "scopus.affiliation" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "developmental biology" . - . - . - "biochemistry" . - . - . - . - . - "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1"^^ . - . - "^\\d+$"^^ . - . - . - . - . - . - "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references genes."^^ . - . - . - "^K[0-9]+$"^^ . - "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made."^^ . - "http://purl.obolibrary.org/obo/PLO_$1"^^ . - . - "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."^^ . - "http://modelseed.org/biochem/reactions/$1"^^ . - . - . - . - "ornaseq" . - . - . - . - . - . - "functional genomics" . - "Vertebrate Skeletal Anatomy Ontology" . - "^\\d+$"^^ . - . - . - "botany" . - . - . - "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1"^^ . - . - . - "Variable"^^ . - . - "agriculture" . - . - "false"^^ . - . - . - . - . - . - . - . - "false"^^ . - "EasyChair Topic" . - "^[0-9]+$"^^ . - "MJoachimiak@lbl.gov" . - . - "preclinical studies" . - . - "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id="^^ . - "obo" . - . - . - "true"^^ . - "CHEMROF is an ontological framework for Chemical Entities Mixtures Reactions Ontological Framework. This OWL ontology is an automated Translation of the source LinkML schema, https://w3id.org/chemrof"^^ . - . - "^\\d{7}$"^^ . - . - . - . - "ontology" . - . - . - "false"^^ . - "GenProp0699"^^ . - "false"^^ . - "https://www.e-cyanobacterium.org/bcs/entity/"^^ . - "NIF Dysfunction" . - "http://purl.obolibrary.org/obo/TADS_$1"^^ . - . - "kegg.brite" . - . - . - . - . - . - . - "false"^^ . - . - "gene" . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "ontology and terminology" . - . - "Universal Natural Products Database" . - . - "false"^^ . - "structure" . - . - "hivreagentprogram" . - . - "dna" . - . - . - . - "Dengue Fever Ontology" . - . - "NA06985"^^ . - "obo" . - . - . - . - . - . - . - "uniprot.proteome" . - . - "Semanticscience Integrated Ontology" . - . - "isfinder" . - . - "false"^^ . - "http://purl.obolibrary.org/obo/TRANS_$1"^^ . - "Genitourinary Development Molecular Anatomy Project" . - "false"^^ . - "An ontology for dengue fever."^^ . - "false"^^ . - "Zebrafish Phenotype Ontology" . - . - . - . - . - . - "TF101014"^^ . - "drugs" . - "chemistry" . - . - "genbank" . - . - . - . - "https://biopragmatics.github.io/providers/sdis/$1"^^ . - . - "property" . - . - . - . - . - . - . - . - "^\\w+$"^^ . - "wicell" . - . - . - . - . - . - . - . - "corrdb" . - "pr" . - "1050"^^ . - . - . - . - . - . - . - "true"^^ . - "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines."^^ . - . - . - "has canonical" . - . - "^\\d+$"^^ . - "https://tools.ietf.org/rfc/rfc"^^ . - . - . - . - "^\\d+$"^^ . - . - "false"^^ . - . - . - . - "The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure."^^ . - . - . - . - "Adrien Coulet" . - . - . - "The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances"^^ . - . - "false"^^ . - . - . - "https://www.obofoundry.org/ontology/$1" . - "structure" . - . - "iceberg.cime" . - . - . - . - . - . - . - "^\\d+$"^^ . - "Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available."^^ . - "00100005"^^ . - . - "policy" . - . - . - "false"^^ . - . - "http://www.genome.jp/dbget-bin/www_bget?ec:"^^ . - "computer science" . - . - . - . - "Alzheimer Gene Database" . - . - . - . - . - . - "agriculture" . - . - "https://permalink.obvsg.at/$1"^^ . - "^BE\\d{7}$"^^ . - "wikidata" . - . - . - "Neil McKenna" . - . - . - . - "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns."^^ . - "0000013"^^ . - "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . - . - "has resolver formatter" . - "Selventa Chemicals" . - . - . - . - . - "https://sed-ml.org/urns.html#language:"^^ . - . - "paul.fabry@usherbrooke.ca" . - . - "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - . - . - . - . - . - . - "^\\d{3}$"^^ . - . - . - . - . - "sebastien.moretti@sib.swiss" . - . - . - "pcl" . - "ICD-O" . - . - . - . - "life science" . - . - "FuTRES Ontology of Vertebrate Traits" . - . - . - . - . - . - . - . - . - . - . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once."^^ . - "http://purl.obolibrary.org/obo/OlatDv_$1"^^ . - . - "systems biology" . - "BIOMD" . - . - "Ligand Expo" . - . - . - . - "false"^^ . - . - . - . - . - "Cephalopod Ontology" . - . - . - . - . - . - "http://xmlns.com/foaf/0.1/$1"^^ . - . - "507568"^^ . - "false"^^ . - . - "pw" . - . - "FB00000917"^^ . - "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1"^^ . - . - . - . - . - . - "virsirna" . - "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/MOD_"^^ . - . - . - . - . - . - . - "obo" . - . - . - . - "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse."^^ . - "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - "Information about the C57BL/6J. Includes genetic background and disease data."^^ . - "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1"^^ . - "proteomicsdb.peptide" . - "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession."^^ . - . - . - "michel.dumontier@gmail.com" . - "Signaling Gateway" . - . - . -_:N906e186161904af98dd7f472fd03689b "Cynthia.Hake@cms.hhs.gov" . - "ChEMBL-Cells" . - "go.model" . - . - . - "FuncBase Fly" . - . - . - . - "https://go.drugbank.com/bio_entities/$1"^^ . - . - . - "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code="^^ . - "https://metacyc.org/compound?orgid=META&id="^^ . - "false"^^ . - . - "hao" . - . - . - "Paula.Duek@sib.swiss" . - "2200934"^^ . - . - . - "obo" . - "true"^^ . - . - . - "botany" . - . - . - . - . - "The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references."^^ . - "true"^^ . - . - "https://doi.org/"^^ . - . - . - . - . - . - . - "vectorbase" . - . - . - . - . - "oborel" . - . - . - "The VIAF® (Virtual International Authority File) combines multiple name authority files into a single OCLC-hosted name authority service. The goal of the service is to lower the cost and increase the utility of library authority files by matching and linking widely-used authority files and making that information available on the Web."^^ . - . - "civic.sid" . - . - . - "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . - . - . - . - . - . - . - "nihreporter.project" . - "protein" . - "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . - "BLL"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"^^ . - "http://linkedlifedata.com/resource/umls/id/$1"^^ . - . - "genome" . - . - "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id="^^ . - . - . - . - "^\\d+$"^^ . - "https://w3id.org/oc/corpus/$1"^^ . - . - "snp2tfbs" . - . - . - . - . - "Egon Willighagen" . - . - "genome" . - . - "nomen" . - . - . - . - . - "https://www.gtexportal.org/home/gene/$1"^^ . - "https://w3id.org/oc/meta/"^^ . - "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis."^^ . - "^[CN]*\\d{4,7}$"^^ . - . - "false"^^ . - "whimar@ohsu.edu" . - "MycoBrowser marinum" . - . - "mim.ps" . - "obo" . - . - . - "shex" . - . - "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc="^^ . - "ontology" . - . - . - "Chemical Information Ontology" . - . - . - "rhea" . - . - "http://genomics.senescence.info/diet/details.php?id=$1"^^ . - . - "false"^^ . - . - . - "ontology" . - . - "P53350"^^ . - "false"^^ . - "https://www.pesticideinfo.org/chemical/$1"^^ . - . - . - "http://purl.dataone.org/odo/SENSO_$1"^^ . - . - . - . - "comparative genomics" . - . - . - . - "Leigh Carmody" . - "1"^^ . - . - . - . - . - . - . - "anatomy" . - . - . - . - "An ontology to standardize research output of nutritional epidemiologic studies."^^ . - . - "0154"^^ . - . - . - . - . - . - . - . - "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$"^^ . - "0011124"^^ . - . - "Dublin Core Elements (1.1)" . - "https://bioregistry.io/pocketome:"^^ . - "http://purl.obolibrary.org/obo/ZFA_"^^ . - . - "https://cls.shop/$1"^^ . - . - . - "gene" . - "^RC\\d+$"^^ . - "http://www.narcis.nl/publication/RecordID/$1"^^ . - . - . - . - . - . - . - . - . - "^A\\d{4}$"^^ . - "unirule" . - . - "epio" . - "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/"^^ . - . - . - "Paula Duek Roggli" . - "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie="^^ . - . - . - . - "ontology" . - "grouping" . - "https://coconut.naturalproducts.net/compound/coconut_id/$1"^^ . - . - "The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate." . - . - "^A[A-Z]+\\d+$"^^ . - . - . - . - "http://purl.obolibrary.org/obo/AISM_"^^ . - . - . - . - . - . - "lcnaf" . - . - . - . - "F11903"^^ . - "Georgeta Bordea" . - . - . - "SKIP001214"^^ . - . - "false"^^ . - "dictybase.gene" . - "umls" . - . - . - . - "topics" . - . - . - "The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions."^^ . - "janna.hastings@gmail.com" . - "genome" . - "^/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$"^^ . - . - . - . - "false"^^ . - . - "https://www.abmgood.com/search?query=$1"^^ . - "sciflection" . - "biologics" . - . - "info@hoelzel.de" . - "https://n2t.net/$1:"^^ . - . - "gene" . - . - . - . - "omics" . - "ontology" . - . - "genome" . - . - . - "oncotree" . - "http://linkedlifedata.com/resource/umls/id/"^^ . - . - "nextProt" . - . - . - . - "classification" . - "https://bioregistry.io/registry/$1"^^ . - . - . - "jstor" . - . - . - "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1"^^ . - . - "TC010103"^^ . - "worm" . - "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id="^^ . - "jonrkarr@gmail.com" . - . - . - "life science" . - . - "https://www.pirbright.ac.uk/node/$1"^^ . - . - . - . - "hendrik.borgelt@tu-dortmund.de" . - . - . - "https://hl7.org/fhir/us/"^^ . - . - . - . - . - . - . - . - . - "ontology" . - . - . - . - . - "igsr" . - . - . - . - . - "0000012b-5661-2f63-2f73-b43980000000"^^ . - . - "bioinformatics" . - . - "neuroscience" . - . - "obo" . - . - "https://biomedit.ch/rdf/sphn-ontology/sphn#$1"^^ . - "Marijane White" . - "171"^^ . - . - "ontology" . - . - "http://purl.org/dc/elements/1.1/$1"^^ . - "false"^^ . - "false"^^ . - "0000003"^^ . - . - "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$"^^ . - . - . - . - . - . - "Gene Regulation Ontology" . - . - . - . - "false"^^ . - . - "http://ctdbase.org/detail.go?type=gene&acc="^^ . - . - "http://purl.obolibrary.org/obo/ZECO_$1"^^ . - "http://purl.obolibrary.org/obo/PLANA_"^^ . - "http://purl.obolibrary.org/obo/AERO_$1"^^ . - "https://cropontology.org/rdf/CO_337:"^^ . - "https://www.addexbio.com/productdetail?pid="^^ . - . - "^\\d+$"^^ . - . - . - . - "OriDB Saccharomyces" . - . - . - . - "false"^^ . - "computational biology" . - . - . - . - . - . - "physiology" . - "pierre-alain.binz@chuv.ch" . - . - . - "http://www.hprd.org/protein/"^^ . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . - . - "^[0-9a-zA-Z\\.\\-\\_]+$"^^ . - "^\\d+$"^^ . - "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).\n\n"^^ . - . - . - . - . - . - . - . - "PdumDv" . - "01.01.005"^^ . - "botany" . - . - "http://purl.obolibrary.org/obo/CTO_$1"^^ . - "life science" . - . - "dna" . - . - . - "1000"^^ . - . - . - "protein" . - . - . - "ontology" . - . - "The Ageing Gene Database" . - . - . - "ontology" . - . - "false"^^ . - . - . - . - "togovar" . - . - . - "classification" . - "91792"^^ . - . - "kegg.compound" . - . - "dna" . - . - _:N441b18bc09374ab9a3f9a92447d2330a . - . - "https://biopragmatics.github.io/providers/cemo/"^^ . - . - . - . - . - "^\\d{5}$"^^ . - . - "gno" . - "mouse" . - "000064"^^ . - . - . - . - . - . - . - "https://molmedb.upol.cz/mol/"^^ . - . - . - "false"^^ . - . - "obo" . - "182"^^ . - "6978836"^^ . - . - . - . - "http://purl.org/ontology/bibo/$1"^^ . - "http://dicom.nema.org/resources/ontology/DCM/"^^ . - "https://registry.identifiers.org/registry?query=MIR:$1"^^ . - . - . - . - . - . - "DICOM Controlled Terminology" . - . - . - . - . - "cellosaurus" . - . - . - "faseb list" . - . - . - "biosimulations" . - . - "false"^^ . - . - "Software"^^ . - "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id="^^ . - . - "ViralZone" . - . - . - . - "^\\d{4}\\-\\d{6}\\-\\d{2}$"^^ . - . - . - . - . - . - "https://www.kazusa.or.jp/huge/gfpage/$1"^^ . - . - . - . - "false"^^ . - . - . - "classification" . - . - "VMH reaction" . - "http://purl.obolibrary.org/obo/DUO_$1"^^ . - . - "The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]"^^ . - "https://bioregistry.io/schema/#$1"^^ . - "^\\d{7}$"^^ . - "Philip.Stroemert@tib.eu" . - . - . - . - . - . - . - . - "Relation Ontology" . - . - . - . - . - "241"^^ . - . - "SWRL enables Horn-like rules to be combined with an OWL knowledge base."^^ . - "false"^^ . - "Wheat ontology" . - "lotus" . - . - . - . - . - "http://www.wikidata.org/entity/$1"^^ . - . - "hsa-let-7a"^^ . - . - . - . - "http://www.hprd.org/protein/$1"^^ . - . - "false"^^ . - "Rv1908c"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - "aging" . - "biomedical science" . - "false"^^ . - "eukaryotic" . - "https://cropontology.org/rdf/CO_320:$1"^^ . -_:N3fb4500a7133478882c829d9fdb72cce "helpdesk@cropontology-curationtool.org" . - "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" . -_:Nbe5c01d384744deab6e86f31b600b4a5 "jamsden@us.ibm.com" . - . - "http://purl.uniprot.org/annotation/$1"^^ . - "genomics" . - "biochemistry" . - . - . - "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"^^ . - . - "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)."^^ . - . - . - "t4fs" . - . - "^\\w{4}$"^^ . - . - . - "ontology" . - "false"^^ . - . - . - . - "The Diseases Database is a cross-referenced index of human disease, medications, symptoms, signs, abnormal investigation findings etc. This site provides a medical textbook-like index and search portal covering areas including: internal medical disorders, symptoms and signs, congenital and inherited disorders, infectious diseases and organisms, drugs and medications, common haematology and biochemistry investigation abnormalities."^^ . - "ontology" . - "https://bioregistry.io/metaregistry/cellosaurus/$1"^^ . - . - . - . - . - . - "molecules" . - . - "kaggle" . - "45539"^^ . - . - "Pathguide contains information about 325 biological related resources and molecular interaction related resources."^^ . - . - . - . - . - . - "Circular double stranded DNA sequences composed" . - "anatomy" . - . - . - . - . - . - "MOL000160"^^ . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/AISM_$1"^^ . - . - "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g="^^ . - "http://purl.obolibrary.org/obo/PECO_$1"^^ . - "genetics" . - . - . - . - "pesticideinfo" . - . - . - "agriculture" . - . - "https://plants.ensembl.org/id/$1"^^ . - . - . - . - "XUO" . - "26"^^ . - . - "TDR" . - "SNP to Transcription Factor Binding Sites" . - "http://sabiork.h-its.org/newSearch?q=ecnumber:"^^ . - . - "ontology" . - . - . - . - "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1"^^ . - . - . - . - . - "metabolomics" . - . - "mp" . - . - . - . - "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval."^^ . - "UniProt provides proteome sets of proteins whose genomes have been completely sequenced."^^ . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id="^^ . - . - . - "^TS-\\d+$"^^ . - . - "immunology" . - . - "aBq"^^ . - "9606"^^ . - . - . - . - "https://nanocommons.github.io/identifiers/registry#$1"^^ . - . - "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/$1"^^ . - . - "life science" . - . - "https://flybase.org/reports/$1"^^ . - "false"^^ . - "http://purl.obolibrary.org/obo/MIAPA_"^^ . - "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research."^^ . - "cancer" . - . - . - "AEO_RETIRED" . - "Database of Arabidopsis Transcription Factors" . - . - "nucc.characteristic" . - "^[0-9]+\\.[0-9]+$"^^ . - . - . - "false"^^ . - "https://www.re3data.org/repository/"^^ . - "https://www.vmh.life/#metabolite/"^^ . - . - . - "fypo" . - "http://purl.obolibrary.org/obo/TGMA_"^^ . - . - . - . - . - . - . - . - . - "MicrosporidiaDB" . - . - . - . - "pathway" . - "https://caninecommons.cancer.gov/#/study/$1"^^ . - . - "0000564"^^ . - . - . - . - . - . - . - "307"^^ . - . - "kronkcj@mail.uc.edu" . - "http://www.w3.org/ns/shex#"^^ . - "true"^^ . - . - . - "gene expression" . - "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . - . - . - "NINDS Human Cell and Data Repository" . - . - "^\\d+$"^^ . - . - "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." . - . - "^[EL]D[SG]-\\d+$"^^ . - . - . - . - "false"^^ . - "http://purl.uniprot.org/isoforms/"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "Nucleotide" . - . - "false"^^ . - . - "^\\d{7}$"^^ . - "false"^^ . - . - "https://pubchem.ncbi.nlm.nih.gov/substance/"^^ . - . - . - . - . - "http://www.w3.org/ns/oa#$1"^^ . - . - . - . - . - . - "ontology" . - . - . - "Apollo Structured Vocabulary" . - . - . - "protein" . - . - . - "obo" . - "https://vocab.lternet.edu/vocab/vocab/index.php?tema="^^ . - "^TA\\d+$"^^ . - . - . - . - . - . - . - "rna" . - "classification" . - "http://hpc-bioinformatics.cineca.it/fusion/cell_line/"^^ . - . - . - "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature."^^ . - . - . - "biomedical science" . - "https://bioregistry.io/p3db.site:"^^ . - . - "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links."^^ . - "false"^^ . - . - . - . - . - "MTHICD9_2006" . - . - . - "unii" . - . - "obo" . - "David.Linke@catalysis.de" . - . - . - "tcb" . - . - . - "https://animaldiversity.org/accounts/"^^ . - "Berkeley Drosophila Genome Project EST database" . - . - . - . - "https://sed-ml.org/urns.html#format:"^^ . - . - . - "0000728"^^ . - "http://www.orpha.net/ORDO/Orphanet_$1"^^ . - "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - "75121530"^^ . - . - "Metabolic Atlas Reaction" . - "model organism database" . - "http://func.mshri.on.ca/yeast/genes/list_functional_scores/"^^ . - . - "false"^^ . - "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1"^^ . - "^\\d+$"^^ . - . - "ANOVA"^^ . - . - "false"^^ . - . - "mmrrc" . - "false"^^ . - . - . - . - . - . - "https://sparontologies.github.io/fabio/current/fabio.html#"^^ . - "false"^^ . - "life science" . - "basic science" . - "Gene Ontology" . - "0001"^^ . - "MCDS_L_0000000001"^^ . - . - "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project."^^ . - . - . - . - "obo" . - . - . - . - . - "51"^^ . - . - . - . - "false"^^ . - . -_:N9ff3b0b9e9be44da9da4229138535296 "Crop Ontology Helpdesk" . - . - . - . - . - "MLCommons Association" . - . - . - "metascience" . - . - . - . - . - . - "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)"^^ . - . - . - "caps" . - . - . - "https://biopragmatics.github.io/providers/bs/"^^ . - "umbbd.enzyme" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Primate Brain Atlas" . - "false"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/AGRO_"^^ . - "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species."^^ . - . - . - . - . - "false"^^ . - . - "GO Chemicals" . - "protein" . - "Sequence types and features ontology" . - . - . - . - . - . - . - . - . - "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code="^^ . - . - . - . - "pubchem.aid" . - . - . - "Protein covalent bond" . - "https://www.disprot.org/idpo/IDPO:"^^ . - "GeneFarm" . - . - . - "schema" . - "knowledge and information systems" . - . - "dna" . - "false"^^ . - . - . - . - . - "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use."^^ . - "78073"^^ . - "75"^^ . - "TIGR00010"^^ . - . - . - . - . - . - "http://drugcentral.org/drugcard/$1"^^ . - "http://swissregulon.unibas.ch/query/"^^ . - "obo" . - . - . - "false"^^ . - "UCR00226"^^ . - "Collection" . - . - "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits."^^ . - "nif.grossanatomy" . - "IntAct Molecule" . - . - . - . - "^(G|P|U|C|S)\\d{5}$"^^ . - . - "Damion Dooley" . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . - . - . - "metabolomics" . - . - "https://www.ebi.ac.uk/chembl/target/inspect/"^^ . - "SNHG3"^^ . - "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank."^^ . - . - . - "17186"^^ . - . - "life science" . - "Cell line databases/resources"^^ . - . - . - . - . - . - . - . - . - . - . - . - "smr@stowers.org" . - . - . - . - . - "Global Biodiversity Information Facility" . - "Anne Thessen" . - "https://www.datanator.info/gene/"^^ . - . - . - . - . - . - "90062901"^^ . - "http://purl.obolibrary.org/obo/ICEO_$1"^^ . - . - . - . - . - . - . - . - "http://www.jcvi.org/mpidb/experiment.php?interaction_id="^^ . - "Activity Streams" . - "bioactivities" . - "8668"^^ . - "true"^^ . - "development" . - "protein" . - . - . - "Multum MediSource Lexicon" . - . - "subject agnostic" . - "https://www.uniprot.org/diseases/$1"^^ . - "^WBRNAi\\d{8}$"^^ . - . - "false"^^ . - "aspgd.protein" . - . - . - "ontology" . - . - . - . - . - "classification" . - . - . - "stock" . - . - . - . - . - _:N7cae4825d6284d579d128ee48b230336 . - "domain" . - . - . - . - . - "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"^^ . - . - . - "life science" . - "Curator name: Clara S. Stanschewski; Curator Affiliation: King Abdullah University of Science and Technology; Contributing Scientists or Crop expert group: The Salt Lab and the Quinoa Phenotyping Consortium Creation Date: 23.05.2021"^^ . - . - . - "https://www.kaggle.com/"^^ . - "false"^^ . - . - . - "rpcec" . - "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement."^^ . - . - . - . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1"^^ . - . - . - . - . - "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1"^^ . - . - . - . - . - "dsonensh@odu.edu" . - . - . - . - . - . - . - . - . - . - "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." . - . - . - . - . - . - "model organism" . - . - . - . - "https://cropontology.org/rdf/CO_343:"^^ . - "http://jaxmice.jax.org/strain/$1.html"^^ . - "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder."^^ . - . - "false"^^ . - . - . - "ontology" . - "ontology" . - . - "The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis."^^ . - . - . - "false"^^ . - . - . - "biomedical science" . - . - . - . - . - "AY209920"^^ . - . - "lter" . - "false"^^ . - . - "ontology" . - . - . - "https://www.ebi.ac.uk/biomodels/$1"^^ . - "resid" . - . - "F0001"^^ . - . - . - . - . - . - "Structural Classification of Proteins - Unique Identifier" . - . - "American Type Culture Collection" . - "unimod" . - . - "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . - "danbri@w3.org" . - . - "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases."^^ . - . - . - . - . - . - "MM00040"^^ . - "Chinese Biological Abstracts" . - . - "MCDS_S_0000000001"^^ . - . - . - "http://database.deepsolar.space:18080/dbs/nlfff/"^^ . - . - "stn" . - . - . - "^\\d{8}$"^^ . - . - . - "BIND accession number" . - . - . - . - . - . - "https://www.gleif.org/lei/"^^ . - . - . - "yid" . - . - "biomodels.teddy" . - . - "^\\d+$"^^ . - . - "ontology" . - . - . - "131392"^^ . - "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . - . - . - "^\\d{7}$"^^ . - . - "human" . - . - "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016"^^ . - "genomics" . - . - "edam.data" . - . - . - "DBSALT001211"^^ . - . - "mriffle@u.washington.edu" . - . - . - . - . - . - . - . - "Assists in resolving data across cloud resources."^^ . - "admin@envipath.org" . - "Maciej Antczak" . - . - . - "metabolomics" . - . - . - . - . - . - "TriTrypDB" . - . - . - . - "ovarian" . - "^\\d+$"^^ . - "https://rism.online/$1"^^ . - . - . - . - . - "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."^^ . - "http://purl.obolibrary.org/obo/BOOTSTREP_"^^ . - . - . - "ClinVar Record" . - . - . - . - "Blake A Sweeney" . - "CASRAI Contributor Roles Taxonomy" . - "https://mediadive.dsmz.de/solutions/$1"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=$1"^^ . - . - . - "https://biosimulations.org/projects/$1"^^ . - . - . - . - . - . - "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type"^^ . - "recombinant host" . - . - . - . - "anatomy" . - . - "992"^^ . - "http://www.xmetdb.org/xmetdb/protocol/"^^ . - . - . - "metabolomics" . - . - . - "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"^^ . - "false"^^ . - "depmap" . - "false"^^ . - "http://multicellds.org/MultiCellDB/$1"^^ . - "ontology" . - "ppdb@gifu-u.ac.jp" . - . - . - . - . - . - "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes."^^ . - "https://biopragmatics.github.io/providers/schem/"^^ . - "false"^^ . - "http://purl.obolibrary.org/obo/YPO_$1"^^ . - "ccf" . - "https://cropontology.org/rdf/CO_334:$1"^^ . - "true"^^ . - "panther.node" . - . - . - . - "molecular medicine" . - . - . - "false"^^ . - . - . - . - "hilmar.lapp@duke.edu" . - . - "https://biopragmatics.github.io/providers/msigdb/"^^ . - "rgap" . - . - . - . - . - . - . - . - "http://www-snorna.biotoul.fr/plus.php?id=$1"^^ . - "cazy" . - "http://www.ubio.org/browser/details.php?namebankID=$1"^^ . - . - . - . - . - "^\\d+$"^^ . - "http://www.yeastract.com/view.php?existing=locus&orfname="^^ . - "fbol" . - . - . - . - "biomedical science" . - . - . - "100010"^^ . - . - . - "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:"^^ . - . - . - "https://glytoucan.org/Structures/Glycans/$1"^^ . - "128796-39-4"^^ . - "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models."^^ . - "social and behavioural science" . - "http://purl.obolibrary.org/obo/PR_$1"^^ . - . - . - . - "^[0-9]+$"^^ . - "ucum" . - . - "structure" . - . - "false"^^ . - "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . - . - . - . - . - . - "Interlab Cell Line Collection" . - . - . - . - "Mouse gross anatomy and development, timed" . - . - . - . - . - "helpdesk@cropontology-curationtool.org" . - "Lonza" . - . - "The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary."^^ . - "bao" . - . - . - . - _:Ndeffa5ef68f746f4b3e6b8b05bb2a287 . - "SNOMEDCT_2005_07_31" . - . - "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards."^^ . - . - "Library of Congress Subject Headings" . - "false"^^ . - . - . - . - . - "^\\d{7}$"^^ . - "false"^^ . - "false"^^ . - . - . - . - "Habronattus courtship" . - . - "CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources. "^^ . - . - . - "^UCR\\d{5}$"^^ . - . - . - "The National Drug File (NDF) is produced by the U.S. Department of Veterans Affairs, Veterans Health Administration (VHA). NDF is a centrally maintained electronic drug list used by the VHA hospitals and clinics. Facilities use the NDF to check drug interactions, to manage orders, and to send outpatient prescriptions to regional automated mail-out pharmacies. NDF includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. "^^ . - . - . - . - . - . - . - "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$"^^ . - . - . - "European Paediatric Cardiac Codes" . - . - . - . - . - . - . - "false"^^ . - . - . - "life science" . - "0000024"^^ . - . - . - . - . - "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/"^^ . - . - . - . - "ontology" . - "Sickle Cell Disease Ontology" . - . - "rna" . - . - "http://purl.obolibrary.org/obo/DERMO_$1"^^ . - "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid="^^ . - . - "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1"^^ . - . - . - . - . - . - . - "Microbial Conditions Ontology is an ontology..."^^ . - "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology."^^ . - . - . - . - "culture" . - "enzyme" . - . - "false"^^ . - . - . - . - . - . - . - "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"^^ . - "SNOMEDCT_US_2022_09_01" . - "PANTHER Family" . - "receptome.family" . - "development" . - "ontology" . - "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId="^^ . - . - . - . - "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."^^ . - _:Nbe5c01d384744deab6e86f31b600b4a5 . - "doco" . - . - . - . - . - "SNP500Cancer" . - "Amos.Bairoch@sib.swiss" . - . - "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=$1"^^ . - "uniprot.keyword" . - "The Essential FRBR in OWL2 DL Ontology (FRBR) is an expression in OWL 2 DL of the basic concepts and relations described in the IFLA report on the Functional Requirements for Bibliographic Records (FRBR), also described in Ian Davis's RDF vocabulary. It is imported by FaBiO and BiRO."^^ . - "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."^^ . - "https://www.ebi.ac.uk/ena/data/view/$1"^^ . - . - "HPSI0114i-bezi_1"^^ . - . - "Nicholas Furnham" . - . - . - "false"^^ . - . - "Physical Medicine and Rehabilitation" . - . - "pharmacology" . - . - . - . - . - . - . - . - . - . - . - "The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt \"neoplasm\" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs."^^ . - "false"^^ . - "https://www.fisheries.noaa.gov/species/"^^ . - "false"^^ . - "chemistry" . - "56305849200"^^ . - "life science" . - . - "IA"^^ . - . - "^[1-9]\\d*$"^^ . - . - "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research."^^ . - . - . - "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$1"^^ . - . - "burkesquires@gmail.com" . - . - "obo" . - . - "obo" . - "false"^^ . - "^Os\\S+t\\d{7}-\\d{2}$"^^ . - . - "MycoBrowser leprae" . - . - "genome" . - "classification" . - . - . - . - "NP_012345"^^ . - "chemical" . - . - . - "foodon" . - . - . - . - . - "3355"^^ . - . - _:N570e518956434d898c70e01934637874 . - "jrsmith@mcw.edu" . - . - . - . - . - . - . - . - "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^ . - . - "biomedical science" . - . - "MEDRA" . - . - . - . - . - . - . - . - . - . - "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=$1"^^ . - "01406"^^ . - . - "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances."^^ . - . - "A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots."^^ . - "Drosophila development" . - . - "http://purl.org/spar/biro/"^^ . - "http://purl.bioontology.org/ontology/npo#NPO_$1"^^ . - "^\\d+$"^^ . - "A controlled vocabulary to support the study of transcription in the human brain"^^ . - "false"^^ . - . - . - "false"^^ . - . - . - . - . - . - "ontology" . - . - . - . - "http://purl.obolibrary.org/obo/MCO_$1"^^ . - "strain" . - . - "pride" . - "^\\d{7}$"^^ . - "entiminae@gmail.com" . - . - "Vendor for assays, cells, and antibodies"^^ . - . - "Ion Channel Electrophysiology Ontology" . - . - . - "norine" . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . - "PF3D7_1328700"^^ . - . - . - . - "Aceview Worm" . - "datacommons" . - . - . - "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world."^^ . - "AOPWiki (Key Event)" . - . - . - . - . - . - "The Japan Chemical Substance Dictionary is an organic compound dictionary database prepared by the Japan Science and Technology Agency (JST)."^^ . - . - . - . - . - "Pennsieve" . - "chemical" . - . - "ECOCYC"^^ . - . - . - . - . - "co_348" . - "^GE\\d+$"^^ . - . - . - "false"^^ . - "emap" . - . - . - . - . - "http://pax-db.org/#!protein/"^^ . - "imsr_em" . - . - . - . - . - . - . - "tred" . - "strain" . - . - . - . - . - "9781584885658"^^ . - "genetics" . - . - . - . - . - . - . -_:N402ce698581442dcae89e6da831fb81e "curator@inoh.org" . - . - "Cellular Phenotypes" . - . - . - . - . - . - "false"^^ . - . - . - "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . - . - "ecology" . - "vso" . - . - . - . - "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks."^^ . - . - . - "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information."^^ . - "http://www.chemspider.com/"^^ . - . - . - "Information for ligands in the BRENDA database."^^ . - . - . - "Cellosaurus" . - "http://uri.neuinfo.org/nif/nifstd/nifext_$1"^^ . - "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology."^^ . - . - "has identifier space owner" . - . - "wasila.dahdul@usd.edu" . - "https://w3id.org/faircookbook/$1"^^ . - . - "false"^^ . - . - . - "false"^^ . - . - . - . - "^HGVST\\d+$"^^ . - . - "false"^^ . - "false"^^ . - "life science" . - "false"^^ . - "false"^^ . - . - . - . - . - "UK Provider Reference Number" . - . - . - "colonatlas" . - . - "cell biology" . - "neuroscience" . - . - "ICD9_2005" . - . - "^\\d+$"^^ . - "ordo.orphanet@inserm.fr" . - "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies."^^ . - "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . - "983"^^ . - . - . - "Nanbyo Disease Ontology" . - "An initiative to empower the research community to harness microbiome data exploration and discovery through a collaborative integrative data science ecosystem."^^ . - . - . - . - "^\\d+$"^^ . - "https://bioregistry.io/ukprn:"^^ . - "The Genomics of Drug Sensitivity in Cancer (GDSC) database is designed to facilitate an increased understanding of the molecular features that influence drug response in cancer cells and which will enable the design of improved cancer therapies."^^ . - "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived."^^ . - . - . - . - "http://purl.org/pav/$1"^^ . - . - "scopus.publication" . - "ontology" . - . - . - . - "http://purl.org/dc/terms/"^^ . - "https://ligandbook.org/package/"^^ . - "https://www.pirbright.ac.uk/node/"^^ . - "http://purl.obolibrary.org/obo/GENO_"^^ . - . - . - . - "I31.952"^^ . - . - "false"^^ . - . - . - . - "PubChem_Compound_CID" . - . - . - . - . - . - . - "E-MTAB-2037"^^ . - . - . - "sequence" . - . - "life science" . - . - "http://purl.obolibrary.org/obo/FBbi_$1"^^ . - . - . - "omics" . - "Informed Consent Ontology" . -_:Ndeffa5ef68f746f4b3e6b8b05bb2a287 "faldo@googlegroups.com" . - . - "https://ssbd.riken.jp/database/dataset/"^^ . - "2842"^^ . - . - "proteomics" . - "false"^^ . - "model" . - . - . - "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$"^^ . - "structure" . - . - . - "identifier for an educational organization issued by the UK Register of Learning Providers"^^ . - "GlycoPOST" . - "enzyme" . - "https://arxiv.org/abs/"^^ . - "obo" . - "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources" . - . - "clinical data" . - . - . - . -_:N8b5f7ad63b6044cf8a17143270c8cbf1 "custserv@nlm.nih.gov" . - . - . - . - "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1"^^ . - . - . - "metaproteomics" . - . - . - . - "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature."^^ . - "Morphological and physiological measurement records generated from clinical and model organism research and health programs."^^ . - . - "Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease."^^ . - . - . - . - . - "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes."^^ . - . - . - . - . - "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:"^^ . - "322"^^ . - . - "A vocabulary about species to support the environmental research community in Arizona and New Mexico"^^ . - "French National Center for Scientific Research - Research Group Identifier" . - . - . - "HL7 V2 Code Systems" . - "3305"^^ . - "http://www.ontologyrepository.com/CommonCoreOntologies/"^^ . - "http://func.mshri.on.ca/mouse/genes/list_functional_scores/"^^ . - . - "Apple Ontology" . - "skosxl" . - . - . - "merops.clan" . - "These are the terms that are improted for FOVT to describe vertebrate traits."^^ . - "HMS LINCS Compound" . - "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."^^ . - . - . - . - . - . - . - . - . - "^WB[A-Z][a-z]+\\d+$"^^ . - "prediction" . - . - . - "^[1-9][0-9]*$"^^ . - "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid="^^ . - . - "biomaterial" . - . - "OBO Metadata Ontology" . - . - . - . - "https://www.diseasesdatabase.com/ddb$1.htm"^^ . - "^[A-Z_]{3}[0-9]{4,}$"^^ . - . - "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" . - . - . - "LINCS Data" . - . - "http://sideeffects.embl.de/se/"^^ . - . - . - "classification" . - "Annotated Regulatory Binding Sites" . - . - . - _:N4e049b627b3a4edaa7e72a9425ccc457 . - . - "grid" . - . - "false"^^ . - . - "small molecule" . - . - "^\\d{8}$"^^ . - . - . - . - "toprea@salud.unm.edu" . - "ontology" . - . - "Software Heritage" . - "Insect Resistance Ontology" . - "molecular biology" . - "https://pharmacodb.ca/cell_lines/"^^ . - . - . - "0000187"^^ . - . - . - . - "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations."^^ . - "Virtual Fly Brain" . - . - "Cell line collections (Providers)"^^ . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/"^^ . - . - . - "cath.superfamily" . - . - . - . - "ontology" . - "protein" . - "http://purl.obolibrary.org/obo/ONTOAVIDA_"^^ . - . - . - "Cell line collections (Providers)"^^ . - "vaccine" . - "Wikidata Property" . - . - . - . - . - "http://purl.obolibrary.org/obo/DINTO_"^^ . - . - . - "E13035"^^ . - . - . - . - "ontology" . - . - "Viral Bioinformatics Resource Center" . - "false"^^ . - "ChEMBL" . - . - . - . - . - . - "help-swissmodel@unibas.ch" . - . - . - . - "epigenetics" . - . - . - "obo" . - "The responsible person for a resource" . - "miriam.resource" . - "phenomics" . - "http://purl.obolibrary.org/obo/RBO_$1"^^ . - "Uber Anatomy Ontology" . - . - . - . - . - . - "life science" . - "TAO_RETIRED" . - "The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]"^^ . - . - . - . - . - "noncodev4.rna" . - "http://pombe.oridb.org/details.php?id=$1"^^ . - . - . - . - . - . - . - "http://europepmc.org/articles/"^^ . - "0000001"^^ . - "false"^^ . - . - . - "clinical studies" . - . - "^\\d+$"^^ . - . - . - . - "wikipathways" . - "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]"^^ . - "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/"^^ . - . - . - "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology."^^ . - "false"^^ . - . - . - . - "TRQ"^^ . - . - . - "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s."^^ . - . - . - "^DDB_G\\d+$"^^ . - "graingenes.symbol" . - . - . - "http://purl.obolibrary.org/obo/BOOTSTREP_$1"^^ . - . - . - . - "https://biopragmatics.github.io/providers/cemo/$1"^^ . - "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway collection references pathway information, primarily for signaling pathways, each with subfamilies and protein sequences mapped to individual pathway components."^^ . - . - "iuphar.receptor" . - . - "false"^^ . - "MarCat" . - . - . - . - "https://www.gtexportal.org/home/gene/"^^ . - . - . - "ElementNumber"^^ . - . - "000000341"^^ . - . - . - . - . - . - . - "protein" . - . - "https://rnacentral.org/rna/$1"^^ . - . - "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. "^^ . - "Environmental Molecular Sciences Laboratory Project" . - . - "NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results)."^^ . - . - . - . - "regulation" . - . - . - . - "human" . - "00000000"^^ . - . - "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter."^^ . - "0000189"^^ . - . - . - "false"^^ . - . - . - "knapsack" . - . - . - . - . - . - . - "HMS LINCS Cell" . - "false"^^ . - . - . - . - "physiology" . - "ontology and terminology" . - . - . - "NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins."^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - "mouse" . - "Federica Quaglia" . - . - . - . - . - "animal" . - . - . - . - . - . - . - . - . - "nicolas.matentzoglu@gmail.com" . - "ATCC number" . - . - . - . - . - "DBG2 Introns" . - . - . - . - . - "false"^^ . - "Rfam database of RNA families" . - . - "PomBase" . - . - . - "Teleost taxonomy ontology" . - "^(Q|P)\\d+$"^^ . - . - "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities."^^ . - "Terms from the source appear in the target resource" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/VBO_$1"^^ . - "idoden" . - "false"^^ . - . - . - . - "ontology" . - . - "Scopus Publication" . - . - . - . - . - . - "0000138"^^ . - "false"^^ . - . - . - . - "^[1-9][0-9]*$"^^ . - . - "biology" . - "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id="^^ . - . - "10087"^^ . - . - "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality."^^ . - "drugbank.metabolite" . - "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . - . - "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers."^^ . - . - . - . - . - . - . - . - . - "helpdesk@cropontology-curationtool.org" . - . - . - "^\\d{10}$"^^ . - . - . - . - "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id="^^ . - . - . - . - . - . - "^M\\d+$"^^ . - "semantic web" . - "https://cropontology.org/rdf/CO_366:"^^ . - . - "fbbt" . - . - "nucleotide" . - . - "SNOMEDCT_US_2019_03_01" . - "cgd" . - . - "Thomas Lütteke" . - . - "http://www.marinespecies.org/aphia.php?p=taxdetails&id=$1"^^ . - . - "ICD9CM_2006" . - "true"^^ . - . - "3966782"^^ . - "Healthcare Common Procedure Coding System" . - . - "Analyses of microbiome data within MGnify"^^ . - "br/0601"^^ . - . - "pba" . - . - . - . - . - . - . - . - . - . - . - . - "Functional Requirements for Bibliographic Records" . - "^SLCTR/\\d{4}/\\d+$"^^ . - "false"^^ . - "^\\d+$"^^ . - . - . - . - . - . - "3532759"^^ . - . - . - "GARD" . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1"^^ . - "ontology" . - "http://stitch.embl.de/interactions/"^^ . - "cas_id" . - . - . - "true"^^ . - . - "https://www.perkinelmer.com/searchresult?searchName=$1"^^ . - "obo" . - . - "obo" . - . - . - . - "civic.eid" . - "false"^^ . - . - . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . - "perkinelmer" . - "zenodo" . - . - . - . - . - "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1"^^ . - . - . - "ontology" . - . - "17165"^^ . - . - . - . - . - . - . - . - . - "https://biopragmatics.github.io/providers/mba/$1"^^ . - "false"^^ . - "KEGG BRITE" . - "protein" . - "ModelDB" . - . - . - . - "http://purl.obolibrary.org/obo/OPL_$1"^^ . - "n2t" . - . - "false"^^ . - . - "taxonomy" . - "An ontology to support disciplinary annotation of Arctic Data Center datasets."^^ . - "gene" . - . - . - . - . - . - . - "MAM01234c"^^ . - "http://cutdb.burnham.org/relation/show/$1"^^ . - "false"^^ . - . - . - "false"^^ . - . - . - "mgnify.analysis" . - . - . - . - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id="^^ . - . - . - "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1"^^ . - . - "false"^^ . - . - . - . - "https://civicdb.org/links/sources/$1"^^ . - . - . - "false"^^ . - . - . - "vt" . - . - . - . - . - . - . - "true"^^ . - "vendor" . - "ontology" . - . - "http://eugenes.org:7072/.bin/fbidq.html?"^^ . - "small molecule" . - . - "Beta Cell Biology Consortium" . - . - "https://s3.us-east-2.amazonaws.com/lg.cede/"^^ . - . - . - . - "https://drugs.ncats.io/drug/"^^ . - "NIF Standard Ontology: Neurolex" . - . - . - . - . - "MultiCellDS Digital Cell Line" . - . - . - . - "Health Procedure Ontology" . - "http://purl.obolibrary.org/obo/CDAO_"^^ . - . -_:Nfbd37b7f4f0847ebb98bf2d1b7f2fd90 "bioportal" . - . - . - . - . - . - . - . - "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1="^^ . - . - . - . - . - . - "dolce" . - . - . - "omics" . - . - "MNXM1723"^^ . - "nemo" . - "88"^^ . - . - "0000171"^^ . - . - . - . - . - . - "diseaseclass" . - . - "xl" . - . - . - "Health Canada Clinical Trials Database" . - . - . - "http://purl.obolibrary.org/obo/SWO_"^^ . - . - . - "ontology" . - . - "small molecule" . - . - "https://www.vmh.life/#metabolite/$1"^^ . - . - "human genetics" . - . - "stap" . - . - . - . - . - . - "https://www.storedb.org/?$1"^^ . - . - . - "^\\d+$"^^ . - "ontology" . - "flymine.chromosome" . - . - "UniRef90_P00750"^^ . - "biomedical science" . - . - . - . - . - . - "epidemiology" . - "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries."^^ . - "false"^^ . - "The Ligand-Gated Ion Channel database provides nucleic and proteic sequences of the subunits of ligand-gated ion channels. These transmembrane proteins can exist under different conformations, at least one of which forms a pore through the membrane connecting two neighbouring compartments. The database can be used to generate multiple sequence alignments from selected subunits, and gives the atomic coordinates of subunits, or portion of subunits, where available."^^ . - . - . - "KEGG_DRUG_GROUP" . - . - . - . - "false"^^ . - . - "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can"^^ . - . - "false"^^ . - "salk" . - "https://vocab.org/vann/$1"^^ . - "eagle-i" . - . - "GWAS Central Marker" . - . - . - . - . - "Beet Ontology ontology" . - "false"^^ . - . - "0000127"^^ . - . - . - . - . - "virushostdb" . - "A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum."^^ . - "human" . - . - "Minimal set of terms for anatomy"^^ . - "Yeast Searching for Transcriptional Regulators and Consensus Tracking" . - "false"^^ . - . - . - . - . - "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform."^^ . - . - "https://bioregistry.io/combine.specifications:"^^ . - . - "http://oid-info.com/get/$1"^^ . - "Heather Piwowar" . - "classification" . - . - "Rebuilding a Kidney" . - "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_$1"^^ . - "Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks."^^ . - . - "false"^^ . - "Chen Yang" . - . - . - . - "1.1.1.1"^^ . - "^\\d{5}$"^^ . - "HIT000195363"^^ . - "false"^^ . - "^\\d{7}$"^^ . - "noaa.cameo" . - "https://www.biocatalogue.org/services/"^^ . - . - . - . - "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"^^ . - . - . - . - . - . - . - "ontology" . - . - . - . - . - "EJH014"^^ . - . - . - . - "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes."^^ . - "PR00001"^^ . - . - . - "obo" . - "0000685"^^ . - . - "http://purl.obolibrary.org/obo/DIDEO_$1"^^ . - "^\\w\\d+$"^^ . - . - "sao" . - "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"^^ . - . - . - . -_:Nb25d6d0b2d8c4f4791e8dc90a749eff0 "Pierre Sprumont" . - "000204"^^ . - . - . - . - . - . - . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid="^^ . - . - . - "0001157"^^ . - . - . - . - "1242"^^ . - . - . - . - "social and behavioural science" . - . - . - "life science" . - . - "eukaryotic" . - "civic.did" . - . - "false"^^ . - . - "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch="^^ . - . - "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1"^^ . - "^\\d{7}$"^^ . - . - . - . - "BTO" . - "interaction" . - . - "Joint Genome Institute Proposals" . - . - . - "https://www.bgee.org/gene/"^^ . - . - . - . - "conferences" . - "https://biopragmatics.github.io/providers/sdis/"^^ . - . - . - "International Nonproprietary Names" . - "false"^^ . - . - . - . - "0000109"^^ . - . - . - . - . - "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1"^^ . - . - . - . - . - "SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt."^^ . - "cst.ab" . - "85163"^^ . - . - . - . - "^[A-Za-z_0-9]+$"^^ . - . - . - . - . - . - . - . - "TaxonomyID" . - . - . - . - "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1"^^ . - . - . - . - "UK Universities and Colleges Admissions Service" . - . - "life science" . - . - . - . - . - "Pubchem" . - . - . - . - . - "true"^^ . - "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1"^^ . - "fplx" . - "ontology" . - . - "health science" . - . - . - . - . - "smid" . - "https://scicrunch.org/resolver/RRID:NXR_$1"^^ . - . - . - "molecular" . - . - . - . - . - . - . - "ontology" . - . - . - . - . - . - . - . - "Edison Ong" . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - "CAE46076"^^ . - . - "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning."^^ . - . - . - . - "false"^^ . - . - "disease" . - "pwo" . - "gene" . - . - . - "http://www.peptideatlas.org/PASS/$1"^^ . - "MIMPS" . - . - . - . - . - . - . - "^\\w+$"^^ . - "Quantities, Units, Dimensions, and Types Ontology" . -_:Nb500c8d05f814fa9a666feba602bbf01 "cs@firstdatabank.com" . - "pass2" . - . - . - "protein" . - . - "systems biology" . - "obo" . - "alberto.traverso@maastro.nl" . - "http://www.allergome.org/script/dettaglio.php?id_molecule=$1"^^ . - "^\\d{7}$"^^ . - "0019030"^^ . - . - . - . - "ExAC Variant" . - . - "false"^^ . - . - . - . - "^[SED]R[APRSXZ]\\d+$"^^ . - "marker" . - . - . - . - "https://coconut.naturalproducts.net/compound/coconut_id/"^^ . - . - . - "The localization and quantitation atlas of the yeast proteome" . - . - "mpath" . - . - "Academic Event Ontology" . - . - . - "SoyBase" . - . - "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes."^^ . - "labo" . - "life science" . - . - . - . - . - . - . - "SwissRegulon" . - . - . - . - "data management" . - "International Standard Serial Number" . - . - "https://cropontology.org/rdf/CO_345:$1"^^ . - "http://purl.org/dc/terms/$1"^^ . - "false"^^ . - "structure" . - "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators."^^ . - . - . - "0000890"^^ . - . - "bcbc" . - "biomedical science" . - . - . - . - . - . - . - "small molecule" . - . - . - . - . - "false"^^ . - . - "biomedical science" . - . - . - "11002"^^ . - . - . - "https://www.checklistbank.org/dataset/3LR/taxon/$1"^^ . - "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref="^^ . - . - . - . - "http://purl.obolibrary.org/obo/MPATH_"^^ . - . - "A modern method of records management and an automated cross-referenced subject index for accurate and comprehensive information retrieval developed by the US FDA's Bureau of Foods"^^ . - . - . - "SNOMEDCT_2020_03_01" . - . - . - . - . - "false"^^ . - . - . - . - "anatomy" . - "metabolite" . - . - . - . - . - . - . - . - . - "obo" . - . - . - . - "0000091"^^ . - . - . - "ForwardStrandPosition"^^ . - . - . - "http://arabidopsis.info/StockInfo?NASC_id="^^ . - . - "cl" . - . - . - . - "http://www.cathdb.info/domain/$1"^^ . - . - . - . - "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs."^^ . - . - . - "Gerald Guala" . - . - . - "AberOWL" . - "false"^^ . - . - . - . - . - . - . - "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-"^^ . - . - . - "glycomics" . - "false"^^ . - . - . - "https://mips.helmholtz-muenchen.de/corum/?id="^^ . - . - "umls.aui" . - . - . - "false"^^ . - "false"^^ . - . - . - "https://www.ensembl.org/id/$1"^^ . - . - . - "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations."^^ . - . - "https://www.grid.ac/institutes/"^^ . - "https://rpcec.sld.cu/en/trials/$1"^^ . - . - . - . - . - . - . - "isDocumentRelatedTo"^^ . - . - . - . - . - "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID="^^ . - . - "Mosquito insecticide resistance" . - . - . - . - . - . - "gene expression" . - "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems."^^ . - . - "ekaterina.chuprikova@eurac.edu" . - "cto" . - . - . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - . - "wyeth@cmmt.ubc.ca" . - . - . - . - "genome" . - . - . - . - . - . - . - "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character."^^ . - . - "ProteomicsDB Peptide" . - . - "Stephen Fisher" . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - "biomaterial manufacture" . - . - _:N399ec073fe08407c9358ec8cdfa97db1 . - . - . - "http://purl.obolibrary.org/obo/MCRO_$1"^^ . - . - . - . - . - "https://www.pombase.org/gene/"^^ . - . - . - . - . - "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."^^ . - . - . - . - "false"^^ . - . - "false"^^ . - . -_:N52cf789d038440fa83be37820122e2cb "chebi-help@ebi.ac.uk" . - . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_func_"^^ . - . - . - . - . - "^\\d{7}$"^^ . - . - "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family."^^ . - . - . - . - . - . - "https://cropontology.org/rdf/CO_338:$1"^^ . - . - "The upper level ontology upon which OBO Foundry ontologies are built."^^ . - "physical geography" . - "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID="^^ . - . - "00007294"^^ . - "Antony Williams" . - . - . - . - . - . - "^[A-Z]+$"^^ . - . - . - . - . - "^000\\d{5}$"^^ . - . - . - . - . - . - "ecology" . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "Gene Expression Ontology"^^ . - "^\\d+$"^^ . - . - "vipr" . - . - . - . - "false"^^ . - . - . - "ICDCM_2005" . - . - "Urmas Kõljalg" . - . - . - . - . - . - "genomics" . - "Compluyeast-2D-DB is a two-dimensional polyacrylamide gel electrophoresis federated database. This collection references a subset of Uniprot, and contains general information about the protein record."^^ . - . - . - "^[a-f0-9]+$"^^ . - . - "obo" . - . - . - . - . - . - . - . - . - . - "https://www.vmh.life/#gene/$1"^^ . - "Bernd Müller" . - "MediaDive Solution" . - . - . - "statistics" . - . - . - . - "kegg.metagenome" . - . - "Human Dermatological Disease Ontology" . - . - . - . - . - . - . -_:Nb6c39353d8c84018a7010dde85517963 "Crop Ontology Helpdesk" . - "identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)"^^ . - . - . - "gene expression" . - . - "Statistical Torsional Angles Potentials" . - "false"^^ . - . - . - . - . - . - . - . - . - . - "A10BA02"^^ . - "false"^^ . - . - . - "NMR Restraints Grid" . - "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1"^^ . - "^\\d{7}$"^^ . - . - . - "/53355/cl010066723"^^ . - . - "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"^^ . - . - "false"^^ . - . - "allele" . - "microbial" . - . - . - . - "obo" . -_:N52cf789d038440fa83be37820122e2cb "Chebi Administrators" . - "has resource example" . - . - "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."^^ . - "Assembling the Fungal Tree of Life - Taxonomy" . - . - . - "nlx.func" . - . - . - . - . - . - . - "medicine" . - "panther.pthcmp" . - . - . - . - . - . - . - . - "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models."^^ . - "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc="^^ . - . - . - . - . - . - . - . - "obo" . -_:Ndc3b3940e66846f99762ce35a820697b "Allotrope Foundation" . - "chemical in the database supplied by National Oceanic and Atmospheric Administration"^^ . - . - . - . - "https://purl.uniprot.org/uniprot/"^^ . - "10194"^^ . - "earth science" . - "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1"^^ . - . - "false"^^ . - . - "genomics" . - . - "virology" . - . - . - . - . - . - . - . - "dna" . - . - "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. "^^ . - "ontology" . - . - "DAP000773"^^ . - "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB."^^ . - . - "cell line" . - "obo" . - . - . - . - . - . - "http://www-bionet.sscc.ru/sitex/index.php?siteid="^^ . - . - . - . - . - . - . - . - . - "0000423"^^ . - . - "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references variant information."^^ . - "wikigenes" . - "http://sabiork.h-its.org/reacdetails.jsp?reactid=$1"^^ . - . - . - "mat" . - . - "Search Tool for Retrieval of Interacting Genes/Proteins" . - . - "protein" . - . - . - . - . - . - . - . - "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc."^^ . - . - "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"^^ . - . - "obo" . - . - . - "http://www.chemspider.com/$1"^^ . - "kinetics" . - . - . - . - . - . - "false"^^ . - "http://www.arachnoserver.org/toxincard.html?id="^^ . - . - "false"^^ . - "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments."^^ . - . - "interfil" . - . - "stem cell" . - . - . - . - . - . - . - . - "AT5G05330"^^ . - . - "https://bioregistry.io/resolve/github/pull/"^^ . - . - . - "https://purl.dataone.org/odo/ADCAD_"^^ . - . - . - . - . - . - . - . - "13"^^ . - . - "Ligand-Gated Ion Channel database" . - "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1"^^ . - . - . - . - "miriam" . - "0000138"^^ . - "OpenCitations Meta Identifier" . - . - "http://purl.obolibrary.org/obo/APOLLO_SV_"^^ . - "ontology" . - "swisslipids@isb-sib.ch" . - "ontology" . - . - "National Drug File - Reference Terminology" . - . - . - "EcoCyc" . - "http://purl.obolibrary.org/obo/ZFS_"^^ . - . - . - "http://purl.obolibrary.org/obo/MPIO_$1"^^ . - . - "health science" . - "KEGG Drug" . - "^\\d{7}$"^^ . - "International Classification of Diseases for Oncology" . - "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics."^^ . - "^[a-z]+(\\-[a-z]+)*$"^^ . - . - . - "orthodb" . - "false"^^ . - . - . - "^\\d{7}$"^^ . - . - "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID="^^ . - "https://www.cameo3d.org/sp/targets/target/$1"^^ . - . - . - . - "2.16.840"^^ . - "URS0000759CF4"^^ . - . - "^PTN\\d{9}$"^^ . - . - . - . - . - "interaction" . - "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2."^^ . - . - . - "LK99"^^ . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1"^^ . - . - . - "https://transyt.bio.di.uminho.pt/reactions/$1"^^ . - . - . - . - . - . - . - . - . - . - "NLXCHEM" . - "KEGG.COMPOUND" . - . - . - . - "https://web.www.healthdatagateway.org/dataset/$1"^^ . - . - . - . - . - . - "The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters"^^ . - . - "Wes Schafer" . - . - . - "haiiu@dtu.dk" . - . - "37af84f2-bfd7-4653-b608-eaff44febba6"^^ . - "^(LCL|LDC|ES|LSC|LPC)-\\d+$"^^ . - . - "TarBase" . - "http://bactibase.hammamilab.org/$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/LOGGERHEAD_$1"^^ . - . - "protein" . - . - "NDFI4Cat Collection" . - . - . - . - . - . - "true"^^ . - . - "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."^^ . - . - "c elegans" . - "genetics" . - . - . - . - "false"^^ . - . - "obo" . - "biomedical science" . - "epidemiology" . - . - . - . - . - "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use." . - . - . - "gene" . - . - . - . - . - . - "genome" . - . - . - . - . - . - . - . - . - . - . - "genetics" . - "MNEST029358"^^ . - . - "Raimond Winslow" . - . - . - . - . - "biology" . - . - "false"^^ . - . - "preclinical studies" . - . - . - . - . - . - . - "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"^^ . - . - . - . - . - . - "^\\d+$"^^ . - "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012"^^ . - "DASHR expression" . - "The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents."^^ . - "biology" . - . - "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication."^^ . - . - "ontology" . - "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da)."^^ . - _:N52cf789d038440fa83be37820122e2cb . - "qafeQTWIWmcC"^^ . - . - . - . - "miRBase Families" . - . - "NIFEXT" . - . - . - . - . - . - . - "hpm.protein" . - . - "ZINC1084"^^ . - "true"^^ . - "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"^^ . - . - . - . - . - . - "An ontology written in OWL 2 DL to enable characterization of the five attributes of an online journal article - peer review, open access, enriched content, available datasets and machine-readable metadata."^^ . - . - . - . - . - "odam" . - . - "http://purl.obolibrary.org/obo/VIDO_$1"^^ . - . - "prefixcommons" . - . - "dashr.expression" . - "https://www.kerafast.com/Search?SearchTerm="$1""^^ . - . - . - . - "kushida@biosciencedbc.jp" . - . - . - "URGI Contact" . - . - . - . - "biomedical science" . - . - "natural science" . - . - . - . - . - "NIF Standard Ontology: Organisms" . - . - . - "uniref" . - . - . - . - "^bt\\d+$"^^ . - . - . - "mesh.2012" . - . - . - . - "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."^^ . - "humanities" . - . - . - . - . - . - . - "false"^^ . - . - . - "Clement Jonquet" . - . - "rnaloops" . - . - . - "BioSystems" . - . - . - . - . - "protein" . - "false"^^ . - "computational biology" . - "life science" . - "classification" . - . - . - . - . - . - . - . - . - . - "International Geo Sample Number" . - . - . - "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world."^^ . - "medicine" . - "ontology" . - . - "agriculture" . - . - . - . - "K00001"^^ . - "scop.sun" . - . - "biology" . - "ird.segment" . - . - . - . - "^LBCTR\\d+$"^^ . - "^C\\d+$"^^ . - . - "Molecular Interactions Controlled Vocabulary" . - . - "^\\d+$"^^ . - "epidemiology" . - . - . - "publishing" . - "https://civicdb.org/links/molecular_profile/$1"^^ . - . - . - . - . - "mipmod" . - "goa" . - . - . - "ChEMBL database of bioactive drug-like small molecules - Cell lines section" . - "https://ssbd.riken.jp/database/project/"^^ . - "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id="^^ . - . - "C6155"^^ . - . - "http://purl.obolibrary.org/obo/ONS_$1"^^ . - . - "icd10cm" . - "https://www.inaturalist.org/observations/$1"^^ . - . - . - "ontology" . - . - "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."^^ . - . - . - . - "peroxibase" . - . - "jimhu@tamu.edu" . - "bibliography" . - "vac" . - "Accession number of an entry from the BIND database."^^ . - "http://purl.obolibrary.org/obo/DC_CL_"^^ . - "false"^^ . - "taxonomy" . - . - . - "https://lobid.org/gnd/$1"^^ . - . - . - . - "DBPedia Ontology" . - "http://exac.broadinstitute.org/transcript/"^^ . - . - . - . - . - . - "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref"^^ . - . - . - "pandit" . - . - . - . - "computational chemistry" . - . - . - "^[a-z_A-Z0-9]+$"^^ . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - "obo" . - "brenda.ligandgroup" . - "jRCTs041220087"^^ . - . - "^PDC\\d+$"^^ . - . - "^\\d+$"^^ . - . - "0000044"^^ . - "charprot" . - "https://fairsharing.org/users/$1"^^ . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1"^^ . - "Ontology of units of Measure" . - . - "iceo" . - . - "215"^^ . - "biomedical science" . - . - "dunand@lrsv.ups-tlse.fr" . - . - "PRINTS compendium of protein fingerprints" . - . - "miRNA Target Prediction at EMBL" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "ontology" . - "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."^^ . - . - "taxonomy" . - "https://fcs-free.org/fcs-database?"^^ . - . - "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks."^^ . - . - . - . - . - "vann" . - "^[0-9A-Za-z-_\\.]+/[0-9A-Za-z-_\\.]+$"^^ . - "http://purl.obolibrary.org/obo/GSSO_"^^ . - "PeptideAtlas Dataset" . - . - "0000487"^^ . - . - "false"^^ . - "http://purl.org/vocab/frbr/core#"^^ . - . - . - . - . - "life science" . - "https://bioregistry.io/jaxmice:"^^ . - . - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1"^^ . - . - . - . - "false"^^ . - "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."^^ . - . - "https://www.metanetx.org/comp_info/$1"^^ . - . - . - "false"^^ . - . - "endocrinology" . - . - "miro" . - "genpept" . - . - . - . - . - "false"^^ . - . - . - "Population and Community Ontology" . - "RTECS is a compendium of data extracted from the open scientific literature. The data are recorded in the format developed by the RTECS staff and arranged in alphabetical order by prime chemical name. Six types of toxicity data are included in the file: (1) primary irritation; (2) mutagenic effects; (3) reproductive effects; (4) tumorigenic effects; (5) acute toxicity; and (6) other multiple dose toxicity. Specific numeric toxicity values such as LD50, LC50, TDLo, and TCLo are noted as well as species studied and route of administration used. For each citation, the bibliographic source is listed thereby enabling the user to access the actual studies cited. No attempt has been made to evaluate the studies cited in RTECS. The user has the responsibility of making such assessments."^^ . - . - . - . - . - "LIPID MAPS" . - "TF0001053"^^ . - . - . - . - "amalik@ebi.ac.uk" . - . -_:Na7005e8d9c2d4562a087947131137d39 "gb-admin@ncbi.nlm.nih.gov" . - "CIViC Therapy" . - . - . - . - . - "protein" . - "Fossilworks Taxon" . - "genome" . - "https://purl.dataone.org/odo/MOSAIC_"^^ . - "IUPHAR_GPCR" . - . - "regulation" . - . - . - . - "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form="^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - "https://cordis.europa.eu/project/id/$1"^^ . - . - . - . - . - "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes."^^ . - . - "false"^^ . - . - "metascience" . - . - "wikipedia" . - "^[A-Za-z-0-9_]+(\\@)?$"^^ . - . - "reo" . - . - "odc.sci" . - . - . - "http://www.humanproteomemap.org/spectrum.php?pep_id="^^ . - . - . - . - "Epilepsy Ontology" . - . - "^\\d+$"^^ . - . - "drug" . - . - . - . - . - . - "HGVPM623"^^ . - . - . - . - "obo" . - "https://www.ebi.ac.uk/gxa/experiments/$1"^^ . - "ontology" . - . - "Sean May" . - . - "phenomics" . - . - . - . - "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data."^^ . - . - "David Osumi-Sutherland" . - "computer science" . - . - . - . - . - "https://cropontology.org/rdf/CO_331:"^^ . - . - . - "78"^^ . - "immunology" . - . - . - . - "alpha.tom.kodamullil@scai.fraunhofer.de" . - "Carbohydrate Active EnZYmes" . - "Paul Fabry" . - . - . - "false"^^ . - "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)."^^ . - . - "2.16.840.1.113883.6.88" . - . - . - . - "false"^^ . - "http://pax-db.org/#!species/$1"^^ . - "metagenomics" . - "http://www.kegg.jp/entry/"^^ . - . - . - . - . - . - . - . - "NCBI_taxid" . - . - . - . - . - . - . - . - "geology" . - "ENST00000407236"^^ . - . - . - . - "Provides the worldwide dog research community a variety of data services including access to genes, genomes, SNPs, breed/disease Traits, gene expression experiments, dog-guman homology, and literatur. In addition, iDog provides online tools for performing genomic data visualization and analyses."^^ . - . - . - "obo" . - . - . - . - . - "50583"^^ . - . - "National Experimental Cell Resource Sharing Platform" . - . - "Influenza Virus Database" . - . - "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes."^^ . - . - . - . - . - "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information."^^ . - . - . - "false"^^ . - . - "false"^^ . - . - "false"^^ . - "ontology" . - "^cpd\\d+$"^^ . - . - "false"^^ . - . - . - "obo" . - . - "http://purl.obolibrary.org/obo/FAO_$1"^^ . - . - . - . - . - . - . - "physiology" . - . - "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database."^^ . - "^\\d{7}$"^^ . - "0000071"^^ . - "^\\d{7}$"^^ . - . - . - "bdsc" . - . - "lincs.smallmolecule" . - . - . - . - "GCST000035"^^ . - "virology" . - "ATCC" . - . - . - "gene expression" . - . - . - . - "repository" . - . - . - "false"^^ . - . - . - . - . - "^[1-9]\\d{5}$"^^ . - "Liz Allen" . - . - "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/$1"^^ . - "PTM-0450"^^ . - "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data."^^ . - . - . - . - "^\\d+$"^^ . - . - "ontology" . - . - . - "donny@polyneme.xyz" . - "http://cellimagelibrary.org/images/$1"^^ . - . - "Colin Batchelor" . - "zmp@ebi.ac.uk" . - . - . - . - . - . - . - . - . - . - "https://www.flymine.org/come/entry?gn=$1"^^ . - "^\\d+$"^^ . - . - "ukprns" . - . - "classification" . - . - . - "nando" . - . - . - . - . - . - . - . - "http://purl.org/spar/bido/"^^ . - . - . - . - "glycomedb" . - . - . - "^\\d{9,9}$"^^ . - . - "0000208"^^ . - . - . - "genome" . - . - "false"^^ . - . - . - . - "tgbugs@gmail.com" . - "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace."^^ . - "Variation Ontology" . - . - "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1"^^ . - . - "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs."^^ . - "mutant mouse repository" . - "Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.\n\n**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3))."^^ . - "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."^^ . - . - . - "ontology" . - . - . - "behavior" . - . - . - . - . - "true"^^ . - "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix)."^^ . - . - . - . - "trans" . - . - . - . - "adult" . - . - . - . - . - "https://odc-tbi.org/data/$1"^^ . - "^\\d{7}$"^^ . - . - "sed-ml.level-1.version-1"^^ . - . - . - "ontology" . - "https://cordis.europa.eu/article/id/"^^ . - "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms."^^ . - . - . - . - . - . - . - "0000032"^^ . - "https://www.cellosaurus.org/CVCL_$1"^^ . - . - . - "^\\d+$"^^ . - . - "false"^^ . - "meteorology" . - . - "false"^^ . - "protein" . - "The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)"^^ . - "http://stormo.wustl.edu/ScerTF/details/$1"^^ . - "0000038"^^ . - . - . - . - "The Epilepsy and Seizure Ontology (EpSO) is an application ontology developed to support epilepsy focused informatics tools for patient care and clinical research. "^^ . - . - . - "https://scicrunch.org/resolver/RRID:BCBC_$1"^^ . - . - . - . - "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc."^^ . - "false"^^ . - "iECABU_c1320"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "^\\d{7}$"^^ . - "ncbi.genome" . - . - . - "unique academic work identifier assigned in Scopus bibliographic database"^^ . - . - "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast)."^^ . - . - . - "novus" . - . - . - . - . - . - . - "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID="^^ . - "false"^^ . - . - "structural bioinformatcs" . - . - "http://purl.obolibrary.org/obo/GOREL_$1"^^ . - "InterPro" . - . - . - "false"^^ . - . - "1455"^^ . - "^\\d+$"^^ . - . - . - . - . - . - "^\\w+$"^^ . - . - . - . - "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors"^^ . - "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. "^^ . - . - . - . - "An ontology of core ecological entities" . - "KEGG-path" . - "https://neurovault.org/collections/"^^ . - . - "bacdive" . - "cgd7_230"^^ . - . - "http://purl.obolibrary.org/obo/MOP_$1"^^ . - "VegBank" . - . - . - "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . - "false"^^ . - . - "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions."^^ . - . - . - . - "https://registry.bio2kg.org/resource/$1" . - . - "http://purl.obolibrary.org/obo/PSDO_$1"^^ . - "00100037"^^ . - "^\\w+$"^^ . - "ERP004492"^^ . - . - . - . - . - . - . - "roundworm" . - "Leszek@missouri.edu" . - . - . - "Yvonne Bradford" . - "nucleotide" . - . - . - . - . - "http://purl.org/gc/$1"^^ . - . - . - . - . - . - . - . - "false"^^ . - "mfoem" . - "NLXRES" . - "clingene" . - . - "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$"^^ . - "^\\d+$"^^ . - . - . - . - . - . - "false"^^ . - . - . - "https://go.drugbank.com/salts/"^^ . - . - "iro" . - . - . - "false"^^ . - . - "^DRSC\\d+$"^^ . - "fcb" . - "^M\\d{4}$"^^ . - . - "0000026"^^ . - "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"^^ . - . - . - . - . - "^T3\\d+$"^^ . - . - "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities."^^ . - "false"^^ . - "virology" . - "https://repeatsdb.org/structure/"^^ . - "https://biopragmatics.github.io/providers/hog/$1"^^ . - "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase."^^ . - . - "^\\d+$"^^ . - . - . - . - . - "^[a-z][a-z0-9_]+[a-z0-9]$"^^ . - . - . - . - . - . - . - . - "^IS\\w+(\\-\\d)?$"^^ . - . - "http://www.cathdb.info/cathnode/$1"^^ . - "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=$1"^^ . - . - . - . - "vendor" . - . - "RiceNetDB Gene" . - . - . - "natural science" . - . - . - . - "https://pharmacodb.ca/datasets/$1"^^ . - . - . - "protein" . - . - . - "Anvil" . - . - . - . - "^\\d+$"^^ . - "https://www.rebuildingakidney.org/id/$1"^^ . - "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name="^^ . - . - "life science" . - . - . - . - "0000000"^^ . - . - . - . - . -_:N0c4133fa3abd40e2babb1af40e7ea11a "Crop Ontology Helpdesk" . - "pharmacy" . - . - "https://uts.nlm.nih.gov/uts/umls/semantic-network/$1"^^ . - "Oryzabase Strain" . - . - . - . - . - . - . - "WikiPathways is a database of biological pathways maintained by and for the scientific community."^^ . - . - . - . - . - . - "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples."^^ . - "http://purl.obolibrary.org/obo/CTENO_"^^ . - "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . - . - . - "Phenotype And Trait Ontology" . - . - . - . - "RNA SSTRAND" . - "https://bioregistry.io/metaregistry/go/$1"^^ . - . - . - "Christophe Dunand" . - . - . - . - . - "dna" . - "https://bioregistry.io/metaregistry/"^^ . - . - . - "0000001"^^ . - "obo" . - . - _:N3fb4500a7133478882c829d9fdb72cce . - . - . - . - . - "true"^^ . - . - . - "Gi07796"^^ . - . - . - "iao" . - . - "^\\w+$"^^ . - "https://go.drugbank.com/reactions/$1"^^ . - . - "JWS Online" . - . - "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects."^^ . - "Minimum Anformation About a Phylogenetic Analysis Ontology" . - "OriDB Schizosaccharomyces" . - . - . - . - . - . - "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr="^^ . - . - . - "2381/12775"^^ . - . - . - . - . - "eugenes@iubio.bio.indiana.edu" . - . - . - . - . - . - "Enzo Life Sciences is an antibody vendor."^^ . - . - . - . - "Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier."^^ . - . - "SCOP(e) concise classification string" . - "^SM\\d{5}$"^^ . - "http://cegg.unige.ch/orthodb/results?searchtext="^^ . - . - "metagenomics" . - . - . - . - . - . - "structure" . - . - "https://orcid.org/"^^ . - "false"^^ . - "obo" . - . - "preclinical studies" . - . - "environmental science" . - . - . - . - . - "bcrc" . - "https://www.iedb.org/reference/$1"^^ . - . - "dsm-v" . - "homd.seq" . - "chemistry" . - "Lars Holm Nielsen" . - . - "false"^^ . - . - . - . - . - . - . - . - "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"^^ . - . - "mirtarbase" . - . - . - . - "^GCF_[0-9]{9}(\\.[0-9]+)?$"^^ . - "false"^^ . - . - . - "structure" . - . - "hms.lincs.dataset" . - . - . - "https://www.probes-drugs.org/compound/$1"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - . - "http://purl.org/spar/deo/$1"^^ . - "http://purl.obolibrary.org/obo/RS_"^^ . - . - . - . - "https://www.metabolome-express.org/datasetview.php?datasetid="^^ . - "http://purl.obolibrary.org/obo/CLYH_$1"^^ . - . - . - . - . - . - . - "preclinical studies" . - _:Nbc75e354242843bbb93bfd83febcc1f4 . - . - "lschriml@som.umaryland.edu" . - "http://www.fairsharing.org/ontology/subject/SRAO_"^^ . - . - . - "ebisc" . - . - "microbiology" . - . - "https://pdc.cancer.gov/pdc/study/"^^ . - . - "http://purl.obolibrary.org/obo/ADO_$1"^^ . - . - . - "BM0456"^^ . - . - "^[1-9][0-9]*$"^^ . - . - . - . - "false"^^ . - "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac="^^ . - "^[A-Z\\-]+$"^^ . - . - "UMR7315"^^ . - . - "UMLS_ICD9CM_2005_AUI" . - . - . - . - "Henriette Harmse" . - . - . - "^\\d+$"^^ . - "https://www.inaturalist.org/taxa/"^^ . - . - "http://classyfire.wishartlab.com/tax_nodes/C$1"^^ . - . - "3"^^ . - . - . - . - . - "anatomy" . - . - "http://purl.bioontology.org/ontology/IDODEN_$1"^^ . - . - . - "biodiversity" . - "^[0-9a-z_:\\.-]+$"^^ . - "false"^^ . - . - . - . - . - "yrcpdr" . - . - . - . - . - . - . - . - "linkml" . - "Database of biopesticides maintained by the University of Hertfordshire "^^ . - . - "http://www.pseudomonas.com/feature/show/?locus_tag="^^ . - . - "dna" . - "nif.ext" . - . - . - . - "KEGG Orthology" . - . - . - . - . - "Australian New Zealand Clinical Trials Registry" . - "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id="^^ . - "^\\d{7}$"^^ . - "iuphar.family" . - . - . - "The S/MAR transaction DataBase" . - . - "ontology" . - . - . - "biomedical science" . - . - . - "S6"^^ . - . - . - . - . - "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages."^^ . - "^DB-\\d{4}$"^^ . - "subject agnostic" . - . - . - . - . - . - . - "protein" . - . - "E-MEXP-1712"^^ . - . - . - . - . - . - . - "0000006"^^ . - . - . - "plasmid" . - . - . - "Fernanda Farinelli" . - "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1"^^ . - . - "https://pharmacome.github.io/conso/"^^ . - . - "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1"^^ . - . - "mhb120@gmail.com" . - . - . - . - "1000000"^^ . - "has responsible" . - . - "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries."^^ . - . - . - . - "^\\d+$"^^ . - . - . - . - "obo" . - . - . - "Nicolas Le Novere" . - . - "^\\d{7}$"^^ . - "sequence" . - . - "Metabolites in drugbank"^^ . - . - . - . - . - . - . - . - . - . - . - "20560"^^ . - . - "NLXINV" . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nifext_"^^ . - "isbn" . - . - . - "HIP000030660"^^ . - . - "ontology" . - "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid="^^ . - "Minimal Anatomical Terminology" . - "Browser for the periodic table of the elements"^^ . - "grid.225360.0"^^ . - . - . - "biomedical science" . - . - "interaction" . - . - . - . - . - . - . - "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" . - . - "fish" . - . - . - . - . - . - "P3DB Site" . - . - . - . - . - . - . - . - "The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture."^^ . - . - . - . - . - . - . - "ontology" . - "fd8d0743-344a-4758-bb97-f8ad84a37357"^^ . - . - . - . - "viralzone" . - "Christopher Baker" . - . - . - . - . - . - . - "An ontology designed to support the semantic annotation of epidemiology resources"^^ . - . - . - . - "ontology" . - "EDDA Study Designs Taxonomy" . - . - "inaturalist.user" . - "MediaDive Ingredient" . - . - . - . - "The Molecular Movements Database lists motions in proteins and other macromolecules. It is arranged around a multi-level classification scheme and includes motions of loops, domains, and subunits."^^ . - . - . - "UniRule" . - "http://igsn.org/"^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - "PubChem Substance ID (SID)" . - "false"^^ . - . - "^c\\d+$"^^ . - "^\\d{7,8}$"^^ . - "jrc-eurl-ecvam-chemagora"^^ . - . - "00000003"^^ . - . - "false"^^ . - . - . - . - . - "obo" . - . - . - "false"^^ . - "has canonical prefix" . - "EOL Secretariat" . - . - "vfb" . - . - . - . - "false"^^ . - "ontology" . - "false"^^ . - . - "EDAM Ontology" . - . - "false"^^ . - . - . - . - "biomodels.vocabulary" . - . - "National Center for Advancing Translation Sciences BioPlanet" . - . - "http://www.peptideatlas.org/PASS/"^^ . - . - . - "0000079"^^ . - . - "true"^^ . - . - . - "22RV1_12_2019"^^ . - "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary."^^ . - "HBB"^^ . - "false"^^ . - . - "ontology" . - "Decentralized Identifier" . - . - . - "false"^^ . - . - "mKIAA4200"^^ . - "protein" . - . - . - "0000547"^^ . - "FlyBase Reference Report" . - . - . - "px" . - . - . - "obo" . - . - . - . - . - . - . - . - "dclunie@dclunie.com" . - . - . - "ontology" . - . - . - . - "false"^^ . - . - "biomedical science" . - "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=$1"^^ . - "http://www.genome.jp/dbget-bin/www_bget?cpd:"^^ . - "^ILMN_\\d+$"^^ . - . - . - "false"^^ . - "Wikipedia" . - "Brain Architecture Knowledge Management System Neuroanatomical Ontology" . - . - . - . - . - "Bioregistry Schema" . - . - . - "false"^^ . - "false"^^ . - . - "icepo" . - "FBgn0000015"^^ . - . - "matrixdb.association" . - "cabri" . - . - . - "0000001"^^ . - "environmental science" . - "mw.project" . - . - "27106865"^^ . - . - . - "http://purl.obolibrary.org/obo/AEO_$1"^^ . - . - "SEQF1003"^^ . - "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information."^^ . - . - "01467"^^ . - . - "SNOMEDCT" . - "COSMIC Cell Lines" . - . - . - . - . - "phylogeny" . - . - "Social Insect Behavior Ontology" . - . - . - "pathology" . - "systems biology" . - . - "cell biology" . - "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 \"historical homology\". Each mapping has been manually reviewed, and we provide confidence codes and references when available."^^ . - . - "David Craik" . - . - . - . - . - . - "sh" . - "cdno" . - "https://www.ribocentre.org/docs/"^^ . - "Human Intermediate Filament Database" . - "FOOD00020"^^ . - . - "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity."^^ . - . - . - . - . - . - . - "http://www.noncode.org/NONCODERv3/ncrna.php?ncid="^^ . - "CIViC Source" . - "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"^^ . - . - "ontology" . - "myco.marinum" . - "systems biology" . - . - . - "PED00017e001"^^ . - . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - "^\\d+$"^^ . - . - . - . - "UR000124451"^^ . - . - . - "The International Classification of Diseases for Oncology (ICD-O) is a domain-specific extension of the International Statistical Classification of Diseases and Related Health Problems for tumor diseases"^^ . - "http://purl.obolibrary.org/obo/PRIDE_$1"^^ . - . - . - . - "subject agnostic" . - "Ekaterina Chuprikova" . - . - . - "NIFEXT covers IRIs that were \"external\" identifiers that were brought into the ontology at some point in time. This was done before most of the current standard ontology and identifier management practices had been developed."^^ . - . - . - "contact@bacdive.de" . - "RC00001"^^ . - . - . - . - "^EDI_\\d+$"^^ . - . - "Drivers of human diseases including environmental, maternal and social exposures."^^ . - . - . - . - . - . - . - "Robert Hoehndorf" . - "https://flowrepository.org/id/$1"^^ . - "Plant Experimental Conditions Ontology" . - . - . - . - "biomedical science" . - . - . - . -_:N3fa0685659fd4de4814b1950f8c1dede "mejino@u.washington.edu" . - . - . - . - "03yrm5c26"^^ . - . - . - . - "narcis.fernandez@gmail.com" . -_:Nb3677b93e9364253a0a9a9c51e4ac0c6 "The World Health Organization" . - . - . - . - "https://www.ncbi.nlm.nih.gov/nlmcatalog/"^^ . - . - . - . - . - . - . - . - "https://www.flymine.org/come/entry?gn="^^ . - . - "Store DB" . - "https://rarediseases.info.nih.gov/diseases/$1/index"^^ . - . - "assetConcepts"^^ . - "genome" . - . - "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1"^^ . - "^[A-Z0-9]+$"^^ . - . - "BRAF"^^ . - "Identifier (name code) for a taxon in the catalogue of life in taiwan"^^ . - . - "http://purl.obolibrary.org/obo/XPO_"^^ . - . - . - . - "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)."^^ . - . - "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - . - . - . - . - "transcriptomics" . - "Citlalli Mejía-Almonte" . - . - . - . - . - "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$"^^ . - "interlex" . - . - "https://run.biosimulations.org/simulations/"^^ . - . - . - . - "BRENDA Tissue Ontology" . - . - "smart" . - . - "25512"^^ . - "uniprot.tissue" . - "chemical biology" . - "small molecule" . - . - . - . - "false"^^ . - . - "subject agnostic" . - . - "Identifier of a taxon or synonym in the Catalogue of Life"^^ . - . - "ccle.cell" . - "taxonomy" . - . - . - . - . - . - "orthology" . - . - "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments."^^ . - "^\\d{7}$"^^ . - . - . - . - "domain" . - "Nikolaos Moustakas" . - . - "false"^^ . - . - "tigrfam" . - . - "https://pubchem.ncbi.nlm.nih.gov/element/$1"^^ . - "http://www.kegg.jp/entry/"^^ . - . - "sabiork.reaction" . - "marine biology" . - "obo" . - . - . - . - "Pol Castellano Escuder" . - . - "http://purl.obolibrary.org/obo/MIRO_"^^ . - "http://purl.obolibrary.org/obo/EO_$1"^^ . - "http://purl.org/vocab/frbr/core#$1"^^ . - . - . - "transcriptomics" . - "false"^^ . - "kdurante@stanford.edu" . - "Ana Rath" . - . - . - . - . - . - "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier."^^ . - . - "WoRMS-ID for taxa" . - "10007835"^^ . - . - "0000025"^^ . - . - "Uberon Property" . - "false"^^ . - . - . - "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data."^^ . - "http://purl.obolibrary.org/obo/PATO_"^^ . - . - . - . - . - "https://bioregistry.io/spike.map:"^^ . - . - . - . - . - "ontology" . - . - . - . - . - . - "cdd" . - "Metabolome Express" . - "Scopus affiliation ID" . - . - . - . - . - . - . - "http://edamontology.org/format_$1"^^ . - "Xenbase" . - . - "http://purl.obolibrary.org/obo/CHEMINF_$1"^^ . - . - . - . - . - . - . - . - "protein" . - . - "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field."^^ . - . - "shacl" . - . - . - . - "false"^^ . - "false"^^ . - . - "proteomics" . - . - "http://uri.neuinfo.org/nif/nifstd/$1"^^ . - "http://purl.obolibrary.org/obo/EMAPA_"^^ . - . - . - . - . - . - "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id="^^ . - "repository" . - "PUBCHEM_CID" . - . - . - . - . - . - . - . - "https://omim.org/MIM:"^^ . - . - "structure" . - "taxonomy" . - . - . - "FlyBase Controlled Vocabulary" . - . - . - . - . - . - "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=$1"^^ . - . - . - . - . - . - "life science" . - . - "environmental science" . - . - . - "Mutant Mouse Resource and Research Centers" . - . - . - . - "biomedical science" . - . - "Studies in dbVar."^^ . - "biology" . - . - "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1"^^ . - "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"^^ . - "identifier of a compound in the UniChem database"^^ . - "Extensible Markup Language" . - . - . - . - "population genetics" . - . - "10b38aaf-b977-4950-85b8-f4775f66658d"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - "Common Access to Biological Resources and Information Project" . - . - "false"^^ . - "^\\d{7}$"^^ . - . - . - . - "ontology" . - . - "protein" . - . - . - . - . - . - "Ontology for Biomedical Investigations" . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . - "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1"^^ . - . - . - "Michael Riffle" . - "lcnafid" . - . - "preclinical studies" . - . - "true"^^ . - "BAC045"^^ . - "http://purl.obolibrary.org/obo/ZEA_$1"^^ . - . - . - . - . - . - "^[a-z_A-Z0-9]+$"^^ . - "^(HOM)?\\d{7}$"^^ . - "mjyoder@illinois.edu" . - "46977"^^ . - "Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . - . - "http://opm.phar.umich.edu/protein.php?pdbid=$1"^^ . - . - "DrugBank Reaction" . - . - . - "Zebrafish anatomy and development ontology" . - . - . - "mwitt@purdue.edu" . - . - "CADAFLAT00006211"^^ . - "RISM Online" . - . - . - "relationships" . - . - "CE28239"^^ . - "life science" . - . - "^[1-9][0-9]{14}$"^^ . - "false"^^ . - . - . - . - . - "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance"^^ . - . - "wikipedia.en" . - . - . - . - "ontoavida" . - . - "817732"^^ . - . - "clinical trials" . - . - . - . - . - . - . - "CNP0171505"^^ . - "Merck Millipore (EMD Millipore)" . - . - . - . - . - . - . - . - . - . - . - "https://www.confident-conference.org/index.php/Event_Series:$1"^^ . - "ngl" . - . - "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id="^^ . - "dna" . - "Bioregistry" . - . - "expression" . - . - "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."^^ . - . - . - "repository" . - . - . - . - "^(ZINC)?\\d+$"^^ . - "http://purl.obolibrary.org/obo/HP_"^^ . - . - . - . - . - . - "^\\d+$"^^ . - "protein" . - . - . - "false"^^ . - . - . - . - . - . - "wujm@bjmu.edu.cn" . - . - "classification" . - . - "obo" . - . - . - . - . - . - "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=$1"^^ . - . - "translational medicine" . - . - . - . - "ontology" . - "ISBN-10" . - . - . - . - "^UPI[A-F0-9]{10}$"^^ . - . - . - . - "http://purl.obolibrary.org/obo/OHD_$1"^^ . - "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."^^ . - "Chinese Clinical Trial Registry" . - . - . - "FBbi" . - "ubio.namebank" . - . - . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - "http://www.humanproteomemap.org/spectrum.php?pep_id=$1"^^ . - "datanator.reaction" . - "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1"^^ . - . - . - "subject agnostic" . - . - "Registry of Toxic Effects of Chemical Substances" . - "false"^^ . - . - . - . - . - . - "false"^^ . - . - "0000128"^^ . - . - . - . - . - "false"^^ . - "obo" . - "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code="^^ . - "https://tree.opentreeoflife.org/taxonomy/browse?id="^^ . - . - . - "Hölzel Diagnostika" . - "false"^^ . - . - . - "00020134"^^ . - . - "treefam" . - . - . - . - . - "E. coli Metabolite Database" . - "umbbd.pathway" . - "https://www.metanetx.org/equa_info/"^^ . - . - . - . - . - . - "systems biology" . - "GXA Gene" . - "classification" . - . - . - . - . - . - "100"^^ . - "^\\d+$"^^ . -_:Nfb9e4277d5bc487682344f95beae248e "Albert Goldfain" . - . - . - . - . - . - . - "oridb.schizo" . - . - "http://ecoportal.lifewatch.eu" . - . - . - . - . - "NONCODE v4 Transcript" . - . - "A database of GlycoMaps containing 2585 conformational maps."^^ . - . - "LDS-1110"^^ . - "DECIPHER CNV Syndromes" . - . - . - . - "ngbo" . - . - . - . - . - . - "uniprot.journal" . - . - "identifier for a fungus taxon in Index Fungorum"^^ . - . - . - "https://www.proteomicsdb.org/#human/proteinDetails/"^^ . - "epidemiology" . - "Activity"^^ . - . - "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."^^ . - "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$"^^ . - . - "https://bykdb.ibcp.fr/data/html/annotated/$1.html"^^ . - . - . - "Anatomical Therapeutic Chemical Vetinary" . - . - "transcriptomics" . - . - "MIPModDB" . - . - "WikiGenes" . - "pgx" . - . - "vcell"^^ . - . - "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1"^^ . - "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1"^^ . - "BioStudies database" . - . - . - "ontology" . - . - "false"^^ . - . - . - . - . - . - "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information."^^ . - . - . - . - . - . - . - "Rutger Vos" . - "asfis" . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - "icdc" . - "obo" . - . - . - "^\\d{7}$"^^ . - "upper-level ontology" . - . - . - . - . - "EROP-Moscow is a curated oligopeptide (2-50 amino acid residues) sequence database which strives to provide a high level of annotations (such as descriptions of the structure of an oligopeptide, its source and function, post-translational modifications, etc.)."^^ . - "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. "^^ . - "^H\\d+$"^^ . - . - . - "Enzo Life Sciences" . - . - . - . - "false"^^ . - "GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data."^^ . - "https://amoebadb.org/amoeba/app/record/gene/$1"^^ . - . - "comparative genomics" . - . - . -_:N2ccf485d4a424189ba97a59849c5d815 "MedDRA MSSO" . - . - . - . - "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . - . - . - . - "protein" . - . - "NIF Gross Anatomy" . - . - . - "false"^^ . - . - . - "FooDB Food" . - . - "sty" . - . - "^PIRSF\\d{6}$"^^ . - . - "http://scipion.i2pc.es/ontology/CRYOEM_$1"^^ . - . - "taxonomy" . - "entrez" . - . - . - "agriculture" . - . - "geography" . - . - "MolBase" . - . - "phenx" . - . - . - "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures."^^ . - . - . - . - . - . - . - . - "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions."^^ . - . - "None"^^ . - . - . - . - "pid" . - "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. "^^ . - "tngb" . - "Cell Image Library" . - . - . - . - . - . - . - . - . - "genome" . - . - "genome" . - . - . - . - "https://ximbio.com/reagent/$1"^^ . - "03212fd7_abfd_4828_9c8e_62c293052d4b"^^ . - . - "crisprdb" . - . - . - . - "chebi" . - "http://w3id.org/nkos/"^^ . - . - "http://www.humanproteomemap.org/protein.php?hpm_id=$1"^^ . - "0001807"^^ . - . - "The Arabidopsis Information Resource" . - "^ENSG\\d{11}$"^^ . - . - "https://www.geonames.org/recent-changes/featurecode/$1/"^^ . - "ISA1083-2"^^ . - . - . - . - . - "obcs" . - . - . - . - "ontology" . - . - . - "zenodo.record" . - . - . - "^[A-Z0-9]{5}\\d+$"^^ . - "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."^^ . - "http://bigg.ucsd.edu/models/$1"^^ . - . - . - . - "^CONSO\\d{5}$"^^ . - . - . - "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages."^^ . - . - . - "anatomy" . - . - "openalex" . - . - "^\\d+$"^^ . - . - "NCBIGene" . - "A collection of ontologies relevant for chemistry.\n\nThe NFDI program deploys a [custom instance](https://terminology.tib.eu/ts/ontologies?collection=NFDI4CAT&and=false&page=1) of the Ontology Lookup Service (OLS) that provides the ontologies in this list.\n\nA further analysis of the metadata landscape of the ontologies in this list can be found [here](https://github.com/nfdi4cat/Ontology-Overview-of-NFDI4Cat).\n\nOntoCompChem and OntoKin appear on the NFDI4Cat list but have not yet been registered in the Bioregistry because the resources are missing/incomplete such that they do not meet minimum Bioregistry metadata standards. These might be added in the future if additional metadata can be found." . - "obo" . - . - . - . - . - . - . - "http://phenol-explorer.eu/foods/$1"^^ . - . - . - "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - . - . - "agriculture" . - "^[A-Z]+[A-Z-0-9]{2,}$"^^ . - "health science" . - . - "http://uri.neuinfo.org/nif/nifstd/oen_$1"^^ . - . - "^\\d+$"^^ . - . - . - "false"^^ . - . - "http://bipaa.genouest.org/apps/grs-2.3/grs?reportID=aphidbase_transcript_report&objectID=$1"^^ . - . - . - . - . - . - "GALEN" . - . - "plant breeding" . - . - . - "https://openalex.org/$1"^^ . - "DrugBank Metabolite" . - . - . - . - "http://ascl.net/"^^ . - . - "^FDB\\d+$"^^ . - "nucleotide" . - . - . - . - . - "S1"^^ . - "Beilstein" . - "jcrb" . - . - "life science" . - . - . - "ECGOntology" . - . - . - "1374"^^ . - . - . - "^\\d{7}$"^^ . - . - "http://www.kegg.jp/entry/$1"^^ . - "^\\d{6}$"^^ . - . - . - "orth" . - . - . - "UM-BBD_ruleID" . - "post-translational modification" . - . - . - . - "false"^^ . - . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"^^ . - . - . - . - . - . - "life science" . - "true"^^ . - . - . - _:Na07a21f763194c74863294891350cae6 . - . - . - "false"^^ . - . - "rna" . - . - . - "MC" . - "The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the nightshade family, which includes species such as tomato, potato, pepper, petunia and eggplant."^^ . - "zp" . - . - . - . - "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'."^^ . - . - . - . - "LO362836C"^^ . - . - . - . - . - . - . - . - "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."^^ . - . - "https://www.kegg.jp/entry/$1"^^ . - . - . - . - . - "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier."^^ . - . - "false"^^ . - . - . - . - . - "obo" . - . - . - . - "murine" . - . - "051"^^ . - . - "tgv139393198"^^ . - . - "95-0166C6"^^ . - "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."^^ . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - "phylogenetics" . - "^\\d+$"^^ . - . - "biomedical science" . - . - . - "NCBI_gi" . - . - . - "ontology" . - . - . - . - . - . - . - . - . - . - . - "4DN" . - . - "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1"^^ . - . - "http://purl.obolibrary.org/obo/GENO_$1"^^ . -_:N570e518956434d898c70e01934637874 "Julie Thompson" . - . - "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html"^^ . - . - . - . - . - . - "https://www.ebi.ac.uk/ega/studies/$1"^^ . - . - "ontology" . - . - "biochemistry" . - . - . - . - "false"^^ . - . - . - . - "UP000005640"^^ . - . - . - . - "rna" . - "Cell line collections (Providers)"^^ . - "protein" . - "false"^^ . - . - . - "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf="^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - "ontology" . - . - . - "obo" . - . - . - . - . - . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/CIDO_"^^ . - "false"^^ . - . - . - "Marc Ciriello" . - . - . - . - . - . - . - . - "true"^^ . - "phytozome.locus" . - . - "gene" . - . - "rna" . - . - . - "ontology" . - . - "protein" . - . - . - "false"^^ . - . - . - . - "http://www.phosphosite.org/siteAction.do?id="^^ . - . - . - "^\\d{7}$"^^ . - "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1"^^ . - . - "umls.cui" . - . - . - . - . - . - . - "http://www.yeastract.com/view.php?existing=locus&orfname=$1"^^ . - "LIPID_MAPS_instance" . - . - . - "https://cropontology.org/rdf/CO_336:"^^ . - "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation."^^ . - "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id="^^ . - . - . - "roman@ebi.ac.uk" . - . - . - . - . - . - "Potato ontology" . - . - . - . - . - . - "Orthology Ontology" . - . - . - . - . - . - . - "protein" . - . - . - . - . - . - "n.queralt_rosinach@lumc.nl" . - . - . - . - "obo" . - . - . - . - . - . - . - "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra."^^ . - . - "USA National Service Center Number" . - "mouse strain" . - . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/PDRO_"^^ . - "false"^^ . - "owl" . - . - "HUMAN16963"^^ . - . - . - "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/"^^ . - . - . - . - . - . - "false"^^ . - "ontology" . - . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . - "rna" . - . - . - . - . - "frbrer" . - . - . - . - . - . - . - "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList"^^ . - "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant."^^ . - "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor."^^ . - "arba" . - "false"^^ . - . - "tissue" . - "bigg.metabolite" . - "transgenic" . - "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . - . - . - . - . - "false"^^ . - . - "Cooperative Patent Classification" . - "1046"^^ . - . - . - "false"^^ . - "proteomics" . - "pco" . - . - . - . - . - "https://bioregistry.io/n2t:"^^ . - . - . - . - . - . - . - "Erik.Segerdell@cchmc.org" . - "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no="^^ . - "The main contact person for a registry" . - . - . - "false"^^ . - "KIAA0001"^^ . - . - "^\\w+(\\.)?\\d+$"^^ . - . - . - "https://cropontology.org/rdf/CO_333:"^^ . - . - . - . - "probonto" . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"^^ . - . - . - "ctibor.skuta@img.cas.cz" . - . - . - . - . - . - . - . - "false"^^ . - . - . - "http://purl.obolibrary.org/obo/OGMS_$1"^^ . - . - "atcvet" . - . - "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)."^^ . - . - . - "gramene.ref" . - "http://www.umbbd.ethz.ch/servlets/rule.jsp?rule="^^ . - "https://archive.gramene.org/db/ontology/search?id=GR_tax:"^^ . - . - . - . - "false"^^ . - "^\\d{7}$"^^ . - "VirGen" . - . - . - . - . - "false"^^ . - . - . - . - . - "BQJCRHHNABKAKU"^^ . - . - . - "0000-0002-5355-2576"^^ . - . - "https://w3id.org/linkml/"^^ . - "trait" . -_:Ndb2ef7d265d64641aedff7e10678a2d4 "Crop Ontology Helpdesk" . - . - . - "soybase" . - "ctis" . - "^\\d+$"^^ . - "allergen" . - . - "false"^^ . - . - . - "^ZDB\\-\\w+\\-\\d+\\-\\d+$"^^ . - . - . - . - "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank."^^ . - "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets."^^ . - . - . - "true"^^ . - "wwpdb" . - . - "UMLS" . - . - . - . - "Gene Ontology Registry" . - "ontology" . - . - . - . - . - . - "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept"^^ . - "https://cropontology.org/rdf/CO_322:$1"^^ . - "A controlled vocabulary to support the study of transcription in the developing human brain"^^ . - "^EMD-\\d{4,5}$"^^ . - "emaps" . - . - . - "ontology" . - "Eric W. Deutsch" . - . - . - . - "AB" . - "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015"^^ . - . - . - . - "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources"^^ . - "false"^^ . - . - "Basic Register of Thesauri, Ontologies & Classifications" . - . - . - . - "false"^^ . - "anatomy" . - "genomics" . - . - "^(E|D|S)RR[0-9]{6,}$"^^ . - . - "kcris" . - "Radiomics Ontology" . - . - . - . - "false"^^ . - . - "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/RNAO_"^^ . - . - . - "brendanx@uw.edu" . - "Pathogen Host Interaction Phenotype Ontology" . - . - . - . - "http://purl.bioontology.org/ontology/npo#NPO_"^^ . - . - . - . - "02069237"^^ . - . - . - . - . - . - "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins."^^ . - . - . - . - . - . - . - . - . - "0002-1975-61"^^ . - "rfc" . - "ontology" . - . - . - . - . - "https://www.ebi.ac.uk/ega/studies/"^^ . - . - . - "gene" . - . - . - . - . - . - . - . - . - . - . - "https://scicrunch.org/scicrunch/interlex/view/ilx_"^^ . - . - . - . - . - . - . - "mpio" . - . - "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . - . - "UniGene" . - . - . - "https://www.cancerrxgene.org/translation/Drug/"^^ . - . - . - . - . - . - . - . - . - "NIST Chemistry WebBook" . - . - . - "Assists in resolving data across cloud resources."^^ . - "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways."^^ . - . - . - . - . - "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature."^^ . - . - . - . - . - . - . - . - . - . - "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes"^^ . - . - . - . - "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC."^^ . - . - . - . - . - "epidemiology" . - . - . - . -_:Nc5c44dad323647e49e9b04c786ba774e "helpdesk@eionet.europa.eu" . - "snp500cancer" . - . - "^\\d{7}$"^^ . - . - "https://www.picb.ac.cn/limore/cellLines/single?para="^^ . - . - . - . - "sourceDateStart"^^ . - . - . - . - "ENSFM00500000270089"^^ . - "112081"^^ . - . - . - . - . - . - . - . - "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1"^^ . - . - . - . - . - . - "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability."^^ . - . - . -_:N8b6898a7af184960a90f42a99249e6c8 "ted@tklein.com" . - . - "drks" . - "Database of human Major Histocompatibility Complex" . - "551115"^^ . - . - "relationships" . - . - "xco" . - "^DDB\\d+$"^^ . - . - . - . - "Cell line collections (Providers)"^^ . - "R-BTA-418592"^^ . - . - . - "chembl" . - . - . - . - "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products."^^ . - . - "Gramene Growth Stage Ontology" . - . - . - . - . - . - . - "variation" . - "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1"^^ . - . - . - . - "https://bioportal.bioontology.org/ontologies/$1" . - "hpm.peptide" . - . - . - "An issue in any public repository on GitHub."^^ . - "^[A-Za-z0-9]+$"^^ . - . - "https://nmrshiftdb.nmr.uni-koeln.de/molecule/"^^ . - "^\\d{5}$"^^ . - "protein" . - . - . - "endocrinology" . - "https://www.mlcommons.org/mlc-id/"^^ . - . - "http://purl.obolibrary.org/obo/PECO_"^^ . - . - . - . - "ICD9CM" . - . - . - "uspto" . - "reaction" . - . - . - . - . - . - . - . - . - . - "https://www.pharmvar.org/gene/"^^ . - . - "National Uniform Claim Committee Taxonomy" . - . - "false"^^ . - "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties."^^ . - . - "po" . - . - "http://exac.broadinstitute.org/gene/$1"^^ . - "^[A-Z]{1,2}\\d{5}$"^^ . - . - . - "https://bioregistry.io/treebase:"^^ . - "^\\d{6}$"^^ . - . - . - . - . - "^G[0-9]{5}[A-Z]{2}$"^^ . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - . - "The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny). \r\n\r\nEach page contains information about a particular group, with pages linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things."^^ . - . - . - "chemistry" . - "^\\d+$"^^ . - . - . - "00000014"^^ . - "Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource"^^ . - "Chemical Methods Ontology" . - . - . - "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/"^^ . - "http://www.w3.org/XML/1998/namespace#$1"^^ . - "^\\w+$"^^ . - "tkg" . - . - "topics" . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/biosystems/$1"^^ . - . - . - . - . - . - . - "https://cropontology.org/rdf/CO_334:"^^ . - . - . - . - . - . - . - "false"^^ . - "0001114"^^ . - . - . - . - . - . - "false"^^ . - . - . - . - . - "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard."^^ . - "protein" . - . - . - . - . - "ordb" . - "LNCipedia" . - . - . - "^\\d{7}$"^^ . - "http://purl.obolibrary.org/obo/HEPRO_"^^ . -_:Nea597ba9607343dfad7d0285b1773c07 "eVOC mailing list" . - . - "https://www.gwascentral.org/phenotype/"^^ . - "false"^^ . - "stian@soiland-reyes.com" . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - "drug discovery" . - . - . - "ontology" . - "http://vbrc.org/gene_detail.asp?gene_id=$1"^^ . - . - "Publishing Workflow Ontology" . - . - "https://bioportal.bioontology.org/" . - "ontology" . - . - . - . - . - . - . - "https://www.kegg.jp/entry/"^^ . - . - . - "ecao" . - . - . - . - . - "structure" . - "0807.4956v1"^^ . - . - "http://func.mshri.on.ca/human/genes/list_functional_scores/"^^ . - . - . - "NCit" . - "http://bacmap.wishartlab.com/maps/$1/index.html"^^ . - . - "^\\w+\\d+$"^^ . - "false"^^ . - . - "molecular chemistry" . - "tritrypdb" . - . - . - . - . - . - "1000003"^^ . - . - . - . - . - . - . - . - "obo" . - . - "biomedical science" . - "ontology" . - . - . - "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis."^^ . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the developing human."^^ . - . - . - . - . - "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1"^^ . - "false"^^ . - . - . - . - . - "richard@cyganiak.de" . - . - . - . - . - . - . - "computational biology" . - . - "false"^^ . - "urn:nbn:fi:tkk-004781"^^ . - "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1"^^ . - . - . - . - "The Vaccine Adjuvant Compendium (VAC) was established in 2020 by the NIAID Division of Allergy, Immunology, and Transplantation to foster collaborations between NIAID-supported adjuvant researchers and the broader scientific community. The VAC displays adjuvant characteristics or metadata defined through NIAID-supported adjuvant studies to help vaccine developers identify suitable adjuvants for various vaccine indications, including immune-mediated and infectious diseases. In addition, the VAC welcomes the inclusion of adjuvant metadata generated by other research programs."^^ . - . - . - "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby."^^ . - . - "identifierPattern"^^ . - "life science" . - . - "MESHD" . - . -_:N0e778a949ea94c0da609abeb109263f3 "Kota Ninomiya" . - "Evan Patterson" . - "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"^^ . - . - "Michael Y Galperin" . - . - . - "MPATH" . - "cpc" . - "life science" . - "ontology" . - "Citation Typing Ontology" . - . - "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature."^^ . - "false"^^ . - . - . - . - "We have developed an online database describing the known cell lines from Coleoptera, Diptera, Hemiptera, Hymenoptera, and Lepidoptera that originated from crop pest insects. Cell line information has been primarily obtained from previous compilations of insect cell lines. (from homepage)"^^ . - . - "RNAloops" . - "false"^^ . - . - "structure" . - "biomedical science" . - "Observational Medical Outcomes Partnership" . - . - . - "ontology" . - "life science" . - . - "false"^^ . - . - . - "false"^^ . - "HomoloGene" . - . - "ontology" . - . - . - "Systems Biology Ontology" . - . - . - "pharmgkb.pathways" . - "Homologous Vertebrate Genes Database" . - . - . - "false"^^ . - . - . - "https://w3id.org/babelon/"^^ . - "false"^^ . - . - . - . - . - "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . - "1200031"^^ . - . - "false"^^ . - . - . - "bibliography" . - . - "M0001"^^ . - "metabolomics" . - . - "false"^^ . - "obo" . - . - . - "http://www.ontobee.org/" . - . - . - . - "Melanoma Molecular Map Project Biomaps" . - . - "Orphanet" . - . - . - . - . - "false"^^ . - . - . - "^\\d+$"^^ . - "https://www.ncbi.nlm.nih.gov/gtr/conditions/"^^ . - . - "minid" . - "fabio" . - "ontology" . - "Ontology of RNA Sequencing" . - . - . - . - . - . - "http://www.icd9data.com/getICD9Code.ashx?icd9="^^ . - "http://purl.obolibrary.org/obo/MRO_"^^ . - . - "ahamosh@jhmi.edu" . - . - "translational medicine" . - . - . - "GitLab" . - . - . - . - "http://purl.obolibrary.org/obo/VTO_$1"^^ . - "faseb list" . - "^\\d{7}$"^^ . - . - "KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships."^^ . - "biology" . - "https://cordis.europa.eu/article/id/$1"^^ . - . - . - . - . - "w.simpson@orcid.org" . - . - . - . - "atol" . - . - "false"^^ . - "gene" . - . - . - . - . - "^SEQF\\d+$"^^ . - . - . - . - "LBCTR2023015204"^^ . - "ontology" . - . - . - "nbo" . - . - "1"^^ . - . - . - . - . - "C0001"^^ . - . - "agriculture" . - . - . - . - . - . - . - "expression" . - "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions."^^ . - "ygob" . - . - "Biological Spatial Ontology" . - . - . - "Information for ligand groups (chemical classes)."^^ . - "^CPX-[0-9]+$"^^ . - . - "life science" . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - "false"^^ . - "false"^^ . - . - "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders."^^ . - . - . - . - "false"^^ . - "Protein Interaction Network Analysis" . - . - "An ontology of Drosophila melanogaster developmental stages."^^ . - "Xenobiotics Metabolism Database" . - . - . - . - "Reference Sequence Collection" . - "http://purl.obolibrary.org/obo/GSSO_$1"^^ . - . - . - . - "philippe.rocca-serra@oerc.ox.ac.uk" . - . - . - "rdb20@pitt.edu" . - . - "dg.6vts" . - "000177759000002"^^ . - . - "http://purl.obolibrary.org/obo/FIX_$1"^^ . - "^\\d+$"^^ . - . - "https://gitlab.com/$1"^^ . - . - "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid="^^ . - . - "Rodent Unidentified Gene-Encoded Large Proteins" . - "https://w3id.org/biolink/vocab/"^^ . - . - "GO Evidence Code" . - . - . - . - "http://vegbank.org/cite/$1"^^ . - "ncithesaurus" . - . -_:N3f1cf0da58784e5eb360502160781559 "pbrooks@hcfa.gov" . - "ecso" . - "mmdb" . - "0000634"^^ . - . - . - "http://purl.obolibrary.org/obo/LIPRO_"^^ . - . - . - . - . - . - . - . - "https://data.4dnucleome.org/experiment-set-replicates/$1"^^ . - . - . - . - . - . - "activityBoundOf"^^ . - . - . - . - . - . - . - "Livestock Product Trait Ontology" . - . - "^[a-z_A-Z0-9]+$"^^ . - "ontology" . - . - _:Na9570be4d12143dc8c7839a5cbde1d74 . - "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations."^^ . - . - . - . - . - "pfr" . - . - "Identifier for a species in iNaturalist"^^ . - . - . - . - . -_:N8b6898a7af184960a90f42a99249e6c8 "W. Ted Klein" . - . - . - "http://purl.obolibrary.org/obo/CL_"^^ . - . - . - "^[A-Z]C\\d{1,3}$"^^ . - . - . - . - . - . - . - "ecacc" . - . - "1h68"^^ . - . - "gold standard" . - . - "^ERM[0-9]{8}$"^^ . - . - . - . - . - . - . - . - "sisu" . - . - . - . - "Semantic Web for Earth and Environment Technology Ontology" . - . - . - . - . - . - "004435"^^ . - . - . - "3SBPLMKKVEVR"^^ . - . - "structure" . - "21877"^^ . - "PharmGKB Disease" . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - "MIMAT0046872"^^ . - . - . - "ontology" . - . - "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid="^^ . - "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."^^ . - . - "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data."^^ . - . - "siren" . - . - "bioinformatics" . - "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/"^^ . - "^\\d+$"^^ . - "0000008"^^ . - . - "^[A-Za-z0-9+_.%-:]+$"^^ . - "CPX-263"^^ . - . - . - "http://purl.org/dc/dcmitype/"^^ . - "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."^^ . - "^[1-9][0-9]{3,6}$"^^ . - "GlycomeDB" . - . - . - "Open Biological and Biomedical Ontologies" . - . - "PhylomeDB" . - . - . - . - "Performance Summary Display Ontology" . - . - "Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world."^^ . - . - . - "false"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/ECO_"^^ . - "dbvar.variant" . - . - . - . - "^[A-Za-z0-9-]+$"^^ . - "^\\d+$"^^ . - . - . - . - "https://proteinensemble.org/"^^ . - . - . - "false"^^ . - . - "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"^^ . - "Akhilesh Pandey" . - . - "false"^^ . - . - "false"^^ . - . - "life science" . - "prefLabel"^^ . - "Cell line collections (Providers)"^^ . - . - . - . - . - . - "http://www.genome.jp/dbget-bin/www_bget?aaindex:"^^ . - . - . - "Ascomycete phenotype ontology" . - . - . - . - "gene" . - . - "imgt.primerdb" . - . - "Biolink Model" . - . - . - . - . - . - . - . - . - . - "H3.03.00.0.00007"^^ . - "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary"^^ . - . - . - "life science" . - "Zach Landis-Lewis" . - . - "http://purl.obolibrary.org/obo/AERO_"^^ . -_:N00dd48a93db94d54a9aa2b15d889c7fd "Matt Berriman" . - "bioproject" . - . - "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId="^^ . - . - . - . - "0000253"^^ . - . - . - "false"^^ . - . - "UniProt Subcellular Locations" . - . - . - . - "ontology" . - . - "dc.terms" . - "A person" . - "false"^^ . - "obo" . - "^.+$"^^ . - . - . - . - "false"^^ . - . - "ontology" . - . - "clement.jonquet@inrae.fr" . - "false"^^ . - "biochemistry" . - "^\\d{7}$"^^ . - . - . - . - . - "^8\\d{4}$"^^ . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - . - "nmr" . - . - . - . - "http://www.gramene.org/db/literature/pub_search?ref_id=$1"^^ . - . - . - . - "classification" . - . - . - "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines."^^ . - . - . - "https://www.ebi.ac.uk/gxa/genes/$1"^^ . - "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration."^^ . - "NIF Standard Ontology" . - . - "Human Medical Genetics" . - . - . - "https://civicdb.org/links/variant_group/"^^ . - "gene" . - . - "developmental biology" . - . - . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . - "http://sugarbind.expasy.org/"^^ . - . - "An organization in FAIRsharing, including universities, labs, etc."^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "Bibliographic Reference Ontology" . - "agriculture" . - "MEROPS Entry" . - "^[0-9]+$"^^ . - "false"^^ . - . - "assays" . - . - . - . - . - "false"^^ . - . - "UniProt Archive" . - "https://www.isrctn.com/"^^ . - "^\\w{1,2}\\d{8,10}$"^^ . - . - "obo" . - . - . - . - "probesanddrugs" . - "3000045"^^ . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/EMAP_"^^ . - . - . - "false"^^ . - "https://vocab.lternet.edu/vocab/vocab/index.php?tema=$1"^^ . - . - "^GN_[A-Za-z0-9_:]+$"^^ . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME"^^ . - "dna" . - "BacMap Biography" . - . - "prgr_human"^^ . - . - "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy."^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump"^^ . - . - "90901"^^ . - . - . - . - . - . - . - "00000180"^^ . - . - . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - "ado" . - . - "genome" . - . - "3771877"^^ . - . - "Molecular Modeling Database" . - . - "https://icd.codes/icd10cm/"^^ . - . - "^\\w+$"^^ . - "MULT_4_VAR1_bovine"^^ . - . - . - . - . - . - . - . - . - . - . - "ensembl.plant" . - . - "^\\d{7}$"^^ . - . - . - . - "hog" . - "Oryzabase Stage" . - "characterisation data heat" . - . - . - "small molecule" . - . - "^\\d+$"^^ . - . - "^[A-Za-z_0-9]+$"^^ . - . - . - "uBio NameBank" . - "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch."^^ . - . - "wikipathways.vocab" . - . - . - . - . - . - "ontology and terminology" . - . - . - . - . - "^NX_\\w+$"^^ . - . - "neurobiology" . - "Cell Lines Service" . -_:N0ae28fac82dc472a8eae124a719e75e4 "psidev-gps-dev@lists.sourceforge.net" . - "false"^^ . - . - "life science" . - . - . - . - . - . - . - "ontology" . - "http://www.iresite.org/IRESite_web.php?page=view&entry_id=$1"^^ . - . - . - "0000003"^^ . - . - "ricenetdb.gene" . - "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" . - . - "A application driven Epilepsy Ontology with official terms from the ILAE."^^ . - . - . - . - . - . - "4685"^^ . - . - "flu" . - "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data."^^ . - . - . - . - . - . - . - "The Ontology of Genes and Genomes" . - . - . - . - . - "This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]"^^ . - . - . - . - . - . - . - . - "ontology" . - . - . - "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination."^^ . - . - "AB0"^^ . - . - "matrixdb" . - . - . - "ligandexpo" . - . - "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."^^ . - "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"^^ . - . - "https://world-2dpage.expasy.org/repository/"^^ . - "GlyTouCan is the single worldwide registry of glycan (carbohydrate sugar chain) data."^^ . - . - . - "ohpi" . - . - "obo" . - . - . - . - "A Knowledge Resource for Innate Immunity Interactions and Pathways" . - "obo" . - "life science" . - . - . - "ddinter.interaction" . - "reproduction" . - . - "GeneTree" . - "cattleqtldb" . - "^GenProp\\d+$"^^ . - . - . - "ubprop" . - . - "https://www.ebi.ac.uk/arrayexpress/arrays/$1"^^ . - "Laia Subirats" . - . - "false"^^ . - . - "cheminformatics" . - . - . - "^K\\d+$"^^ . - "^jRCT\\w?\\d+$"^^ . - . - "human disease" . - . - "genome" . - "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world."^^ . - "false"^^ . - . - "http://www.alzgene.org/geneoverview.asp?geneid="^^ . - . - . - . - "It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]"^^ . - "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1"^^ . - "^PED\\d{5}e\\d{3}$"^^ . - "^\\d+$"^^ . - . - . - "knowledge and information systems" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."^^ . - . - "yetfasco" . - . - . - . - "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium."^^ . - "International Classification of Diseases, 10th Revision" . - . - . - "genotype" . - "2200950"^^ . - "ab-1-ha"^^ . - . - . - "eo" . - "myco.tuber" . - . - "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"^^ . - . - . - "100000000000001"^^ . - . - . - . - "Digital archive of scholarly articles" . - . - . - "^[1-9]\\d*$"^^ . - . - . - . - . - . - "https://herv.img.cas.cz/s/$1"^^ . - "Maize gross anatomy" . - . - "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"^^ . - . - "mmsinc" . - "co_323" . - . - "panther.pathway" . - "Cancer Data Standards Registry and Repository" . - . - . - "ontology" . - . - . - . - . - . - "Meghan Balk" . - . - "http://purl.obolibrary.org/obo/APOLLO_SV_$1"^^ . - . - . - . - "10343835"^^ . - . - . - . - "TreeFam" . - "https://purl.dataone.org/odo/ADCAD_$1"^^ . - "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein."^^ . - . - . - "gtr" . - "The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design."^^ . - . - "^\\d+$"^^ . - "https://www.datanator.info/metabolite/"^^ . - "ontology" . - "^\\d+$"^^ . - . - . - . - . - . - "protein" . - . - "obo" . - "gtex" . - . - "genotype" . - "http://biomodels.net/rdf/vocabulary.rdf#"^^ . - . - "subject agnostic" . - . - . - "bindingdb" . - "true"^^ . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - "nasa/kepler-exoplanet-search-results"^^ . - . - . - . - . - . - . - "272"^^ . - "http://bigg.ucsd.edu/models/universal/metabolites/"^^ . - . - "kegg.dgroup" . - "biocatalogue.service" . - "genome" . - "tanja.bekhuis@tcbinfosci.com" . - "true"^^ . - "Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences."^^ . - . - "true"^^ . - "https://civicdb.org/links/diseases/"^^ . - . - . - . - . - . - "life science" . - "http://www.alzgene.org/geneoverview.asp?geneid=$1"^^ . - . - "gene" . - . - "977869"^^ . - . - . - . - "metatlas" . - . - . - "false"^^ . - "mop" . - . - "grouping" . - . - "Identifier for an animal, plant, or microorganism from the fossilworks website"^^ . - "74"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - "117145750"^^ . - . - "subject agnostic" . - "https://ssbd.riken.jp/database/dataset/$1"^^ . - "storedb.dataset" . - "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools" . - . - . - "ontology" . - "77"^^ . - . - . - "http://isbndb.com/search-all.html?kw="^^ . - "knowledge and information systems" . - . - . - . - "^\\d{7}$"^^ . - "^(\\w+)?\\d+$"^^ . - "database" . - . - "http://www.isni.org/isni/"^^ . - . - "EBI-366083"^^ . - . - "ontology" . - . - "http://data.crossref.org/fundingdata/funder/10.13039/"^^ . - . - "^\\d+$"^^ . - . - "^\\d{7}$"^^ . - "false"^^ . - . - . - . - . - . - . - "0221"^^ . - . - "false"^^ . - "https://www.ccdc.cam.ac.uk/services/structures?pid=csd:$1&sid=IDORG"^^ . - . - . - "SIGNOR Relation" . - "https://precision.fda.gov/uniisearch/srs/unii/$1"^^ . - . - . - . - . - . - "embryo" . - . - "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles."^^ . - . - . - . - "Michelle Giglio" . - "^\\d+$"^^ . - . - . - "http://purl.obolibrary.org/obo/FBcv_"^^ . - "^oai\\:cwi\\.nl\\:\\d+$"^^ . - . - . - . - . - . - "^MMP\\d+.\\d+$"^^ . - "false"^^ . - . - . - . - "^\\d+$"^^ . -_:N50a2361590df4817930385e1bb2bde35 "J.Bard@ed.ac.uk" . - "dal.alghamdi92@gmail.com" . - . - "67"^^ . - . - . - . - "false"^^ . - "cro" . - "environmental science" . - . - "protein" . - . - . - . - . - . - "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm"^^ . - "COG Pathways" . - "strain" . - . - . - . - "LCSCCPN"^^ . - . - . - "obo" . - . - . - "https://www.ebi.ac.uk/complexportal/complex/$1"^^ . - . - . - . - . - "^[A-Za-z_0-9]+$"^^ . - . - . - . - . - . - . - . - "2526"^^ . - . - . - "animal physiology" . - "https://web.www.healthdatagateway.org/dataset/"^^ . - . - . - . - . - . - . - "true"^^ . - "Wikidata is a collaboratively edited knowledge base operated by the Wikimedia Foundation. It is intended to provide a common source of certain types of data which can be used by Wikimedia projects such as Wikipedia. Wikidata functions as a document-oriented database, centred on individual items. Items represent topics, for which basic information is stored that identifies each topic."^^ . - . - "PhosphoPoint Kinase" . - . - "The goal of the SNP500Cancer project is to resequence 102 reference samples to find known or newly discovered single nucleotide polymorphisms (SNPs) which are of immediate importance to molecular epidemiology studies in cancer."^^ . - . - "PS00001"^^ . - . - "life science" . - . - . - "^[A-Z]{6}(\\d{2})?$"^^ . -_:N906e186161904af98dd7f472fd03689b "Cynthia Hake" . - "UBREL" . - "http://purl.obolibrary.org/obo/FAO_"^^ . - . - "life science" . - . - . - "UPPRO" . - . - "_space_group_symop.operation_xyz"^^ . - . - . - "false"^^ . - . - . + . + "mutant mouse strain" . + . + "obo" . + . + "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . + . + "http://purl.obolibrary.org/obo/HTN_"^^ . + . + "wicell" . + . + . + . + . + . + . + "ATCC" . + "FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina."^^ . + "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . + . + . + . + "http://purl.obolibrary.org/obo/ZFS_"^^ . + "http://purl.obolibrary.org/obo/OMRSE_"^^ . + . + . + . + "fluticasone"^^ . + "kupo" . + . + . + "ChEMBL database of bioactive drug-like small molecules - Cell lines section" . + "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$1"^^ . + "Barry Smith" . + "http://bigg.ucsd.edu/models/"^^ . + "false"^^ . + . + "ogsf" . + "PGS000018"^^ . + _:Nc2e3ba42f6a046898fa70b628a52ec6c . + . + "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects."^^ . + . + . + . + "1801.012"^^ . + . + . + . + "ontology" . + . + . + . + . + . + "UPI000000000A"^^ . + "Association-Rule-Based Annotator (ARBA), a multiclass, self-training annotation system for automatic classification and annotation of UniProtKB proteins. This replaces the previous rule-based SAAS system."^^ . + "tobias.schulze@ufz.de" . + "Animal Genome Size Database" . + . + . + . + . + . + "Human Protein Atlas tissue profile information" . + . + . + . + . + "obo" . + . + . + "The dbEST contains sequence data and other information on \"single-pass\" cDNA sequences, or \"Expressed Sequence Tags\", from a number of organisms."^^ . + . + "subject agnostic" . + "cosmic" . + "https://archive.gramene.org/db/ontology/search?id=GR_tax:$1"^^ . + . + "ENSG00000136147"^^ . + _:N1dbd0a5640f74b8fbcc7f4ee551d82ae . + . + "ero" . + "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr=$1"^^ . + . + . + . + . + . + "http://www.narcis.nl/publication/RecordID/$1"^^ . + . + . + . + . + . + "http://id.who.int/icd/entity/"^^ . + . + . + "Bjoern Peters" . + . + . + . + . + "false"^^ . + . + . + . + . + "false"^^ . + "FBbt" . + "0000487"^^ . + . + . + . + "Canadian Drug Product Database" . + "obo" . + "schema" . . - "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers."^^ . - "SNOMEDCTCT" . - . - . - "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$"^^ . - . - . - "http://www.ncbi.nlm.nih.gov/clinvar/"^^ . - . - . - . - . - "^\\d+$"^^ . - . - "polcaes@gmail.com" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "cmf" . - "HomologyRelation"^^ . - . - . - "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$"^^ . - "rna" . - "http://www.kegg.jp/entry/$1"^^ . - . - "hipsci" . - . - "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId="^^ . - "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf"^^ . - . - . - . - "tads" . - . - . - . - . - "http://www.interfil.org/details.php?id="^^ . - "AutDB" . - . - "A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO."^^ . - . - "0000048"^^ . - "Sequencing Initiative Suomi" . - "false"^^ . - "classification" . - . - . - "edam.topic" . - "rbo" . - "mirbase.mature" . - "https://www.ncbi.nlm.nih.gov/sra/$1"^^ . - "^WP\\d{1,5}(\\_r\\d+)?$"^^ . - . - . - "https://bioregistry.io/cazy:"^^ . - "The cBioPortal for Cancer Genomics" . - "https://www.geonames.org/"^^ . - . - . - . - . - . - "AT1G73965"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - "co_358" . - "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence."^^ . - "http://antibodyregistry.org/AB_"^^ . - . - . - . - "co_347" . - . - . - . - . - . - . - . + "obo" . + "The Mammalia Polymorphism Database is a secondary database designed to provide a collection of all the existing polymorphic sequences in the MammaliaOnline query interfaces facilitate data interrogation by different polymorphism parameter values and keyword queries (based on SQL searches)."^^ . + "The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community (from https://gnomad.broadinstitute.org)."^^ . + . + . + "dlxc" . + . + . + . + . + . + . + . + _:N4b3abacffda54ddcb05fdf06621a953e . + "A public place to process, interpret and share GC/MS metabolomics datasets."^^ . + . + . + . + . + "Allyson Lister" . + . + . + . + "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id="^^ . + . + . + . + . + . + . + "provides for" . + . + "mediadive.solution" . + "0000728"^^ . + . + . + . + . + . + . + . + . + . + . + "1915"^^ . + . + . + "life science" . + . + "false"^^ . + . + "The reviewer of a prefix" . + . + . + "e.arnaud@cgiar.org" . + "http://purl.obolibrary.org/obo/SOPHARM_"^^ . + . + "https://mediadive.dsmz.de/ingredients/"^^ . + . + "http://getentry.ddbj.nig.ac.jp/getentry/dad/$1"^^ . + . + . + . + . + . + . + . + . + . + "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."^^ . + "The standard reference for nomenclature and diagnostic criteria in toxicologic pathology."^^ . + . + "ontology" . + . + . + "https://cropontology.org/rdf/CO_341:"^^ . + "false"^^ . + . + . + . + . + . + "false"^^ . + . + "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query="^^ . + . + "regulation" . + . + "gene" . + "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:"^^ . + "biology" . + . + "false"^^ . + . + "Michael Y Galperin" . + . + . + "NONCODE v3" . + . + . + "Curator name: Clara S. Stanschewski; Curator Affiliation: King Abdullah University of Science and Technology; Contributing Scientists or Crop expert group: The Salt Lab and the Quinoa Phenotyping Consortium Creation Date: 23.05.2021"^^ . + . + . + . + "NMRShiftDB structure" . "database" . - . - . - "http://purl.org/spar/bido/$1"^^ . - . - . - . - "http://www.ebi.ac.uk/cmpo/CMPO_"^^ . - . - "https://www.ebi.ac.uk/pdbsum/$1"^^ . - . - "^T[A-Z]\\d{7}$"^^ . - . - . + . + "http://www.pseudomonas.com/feature/show/?locus_tag="^^ . + "false"^^ . + "false"^^ . + . + . + . + . + "biomedical science" . + . + . + . + . + . + . + "GL50803_102438"^^ . + "MIPModDb is a database of comparative protein structure models of MIP (Major Intrinsic Protein) family of proteins, identified from complete genome sequence. It provides key information of MIPs based on their sequence and structures."^^ . + . + . + "psychiatry" . + . + . + . + "Arabidopsis Small RNA Project" . + . + "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."^^ . + . + . + "mro" . + . + "ihw" . + . + "^[0-9X\\-]+$"^^ . + . + . + . + . + "Draft version"^^ . + "obo" . + "CH_001923"^^ . + "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID="^^ . + . + . + . + "An ontology that provides a structured vocabulary for rhetorical elements within documents (e.g., Introduction, Discussion, Acknowledgements, Reference List, Figures, Appendix). It is imported by DoCO."^^ . + "phenomics" . + "fig|306254.1.peg.183"^^ . + . + . + "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1"^^ . + . + . + "Thai Clinical Trials Registry" . + "02069237"^^ . + . + "iceberg.cime" . + . + "iRefWeb" . + "false"^^ . + . + . + . + . + "The Foundational Model of Anatomy Ontology (FMA) is a biomedical informatics ontology. It is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy."^^ . + "32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/b545cabc-8c9e-4b20-8848-efa015b481ea"^^ . + . + . + "genome" . + "http://purl.obolibrary.org/obo/CHMO_"^^ . + "KEGG_REACTION_CLASS" . + . + . + . + . + . + "false"^^ . + . + . + . + "biology" . + "^\\d+$"^^ . + "GabiPD (Genome Analysis of Plant Biological Systems Primary Database) constitutes a repository for a wide array of heterogeneous data from high-throughput experiments in several plant species. These data (i.e. genomics, transcriptomics, proteomics and metabolomics), originating from different model or crop species, can be accessed through a central gene 'Green Card'."^^ . + . + "cell" . + "ontology" . + . + . + . + . + "life science" . + . + . + "MSH2010_2010_02_22" . + . + . + "proteomics" . + "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=$1"^^ . + . + "false"^^ . + . + "selventa" . + . + . + . + . + "false"^^ . + . + . + . + . + "The HMS LINCS Database currently contains information on experimental reagents (small molecule perturbagens, cells, and proteins). It aims to collect and disseminate information relating to the fundamental principles of cellular response in humans to perturbation. This collection references proteins."^^ . + . + . + . + "0000509"^^ . + . + "http://www.receptors.org/nucleardb/proteins/$1"^^ . + . + . + . + "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp=$1"^^ . + "chemistry" . + . + "life science" . + . + "Common Access to Biological Resources and Information Project" . + . + . + "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)."^^ . + "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:"^^ . + "obo" . + . + "http://purl.org/spar/biro/"^^ . + . + . + . + . + . + . + . + "DI-04240"^^ . + "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=$1"^^ . + . + "http://www.proteinmodelportal.org/query/uniprot/"^^ . + . + . + . + "true"^^ . + . + . + . + . + . + "http://purl.org/linked-data/cube#$1"^^ . + "eVOC (Expressed Sequence Annotation for Humans)" . + "http://purl.org/spar/pro/"^^ . + . + . + . + . + . + . + . + . + "rapdb.transcript" . + . + "http://clipserve.clip.ubc.ca/topfind/proteins/"^^ . + . + "http://uri.neuinfo.org/nif/nifstd/nifext_"^^ . + . . - "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1"^^ . - . - "genetics" . - . - "https://www.ebi.ac.uk/ena/browser/view/"^^ . - . - "LOTUS Initiative for Open Natural Products Research" . - . - . -_:N99cf0000a4e74a949363596ae1f73f20 "Plant Ontology Administrators" . - . - . - . - . - . - "false"^^ . - . - . + "AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets." . + . + . + . + "genome" . + . + . + "fyler" . + "^\\w+$"^^ . + . + "human" . + . + "veterinary medicine" . + . + "UniProtKB-KW" . + "uniprot.tissue" . + . + "1023371"^^ . + "false"^^ . + . + . + . + "https://purl.dataone.org/odo/SALMON_$1"^^ . + . + "false"^^ . + . + "Gary L Andersen" . + "rna" . + . + . + . + "false"^^ . + . + "false"^^ . + . + . + "life science" . + "co_341" . + . + . + . + "hepro" . + . + . + "false"^^ . + "BSU29180"^^ . + "vmhreaction" . + . + . + . + . + "pierre.grenon@ifomis.uni-saarland.de" . + "Medical Subject Headings" . + "Metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes.\n\n**Deprecation Notice**: While the `/elements/1.1/` namespace will be supported indefinitely, DCMI gently encourages use of the `/terms/` namespace (i.e., `dcterms`) ([source](https://www.dublincore.org/specifications/dublin-core/dcmi-terms/#section-3))."^^ . + . + . + . + "http://www.innatedb.ca/getGeneCard.do?id=$1"^^ . + . + . + . + "ricenetdb.gene" . + "^[A-Za-z_]+$"^^ . + "EGID" . + "https://umgear.org/p?id="^^ . + "http://www.imgt.org/ligmdb/view?id="^^ . + "gbif" . + . + . + . + "Created by researchers and data managers professionals, the FAIR Cookbook is an online resource for the Life Sciences with recipes that help you to make and keep data Findable, Accessible, Interoperable, and Reusable (FAIR).\n\n"^^ . + . + . + . + . + . + . + . + "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"^^ . + . + . + "UniProt Post-Translational Modification" . + . + "^[0-9]+$"^^ . + "The Ion Channel Electrophysiology Ontology supports the capture of voltage-gated ion channel electrophysiological data from the literature in a structured manner and thus enables other applications such as querying and reasoning tools. "^^ . + . + . + . + . + . + "mouse" . + "https://urgi.versailles.inra.fr/gnpis/#result/term=$1"^^ . + "An ontology to represent genomics cohort attributes."^^ . + . + . + . + "false"^^ . + . + . + "oma.grp" . + "transgenic" . + "^C\\d{8}$"^^ . + . + . + . + "ontology" . + . + . + . + "00100005"^^ . + "PXD000500"^^ . + . + "ontology" . + . + . + . + . + "https://prefix.cc/$1" . + . + . + "ontology" . + . + "dgrc" . + . + . "AMDEFA"^^ . -_:N8375243ef7764e1790fa4dedefde6ea2 "vladimir.n.mironov@gmail.com" . - "false"^^ . - "MedDRA" . - . - "VIRsiRNA" . - . - "Identifiers.org Terms" . - . - . - . - . - . - . - . - . - . - . - . - "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information."^^ . - "http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1"^^ . - "phosphosite.protein" . - . - "^\\d+$"^^ . - . - . + "infectious disease medicine" . + . + . + . + . + "linikujp@gmail.com" . + . + . + "protein" . + . + . + "VHOG_RETIRED" . + . + . + . + "^ILMN_\\d+$"^^ . + . + . + . + . + "Apollo Structured Vocabulary" . + . + . + "1kfv"^^ . + . + . + . + . + . + "false"^^ . + . + . + . + . + "false"^^ . + . + "Uberon" . + "https://lincs.hms.harvard.edu/db/datasets/"^^ . + . + . + . + "CTD Chemical" . + . + "^((\\d+\\.-\\.-\\.-)|(\\d+\\.\\d+\\.-\\.-)|(\\d+\\.\\d+\\.\\d+\\.-)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . + . + "imaging" . + . + "ontology" . + . + . + . + "phenotypes" . + . + "ricegap" . + "false"^^ . + . + . + "https://assets.nemoarchive.org/"^^ . + . + "keilbeck@genetics.utah.edu" . + . + . + . + "CHEMBL4303805"^^ . + . + "http://www.w3.org/2008/05/skos-xl#$1"^^ . + . + "^CONSO\\d{5}$"^^ . + . + . + "http://www.lipidmaps.org/data/LMSDRecord.php?LMID="^^ . + "0000010"^^ . + . + . + "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid="^^ . + "Circular double stranded DNA sequences composed" . + . + "ontology" . + . + . + "154022"^^ . + . + . + . + . + "true"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ExO_$1"^^ . + . + . + . + . + . + "ontology" . + . + . + . + "Decentralized Biomedical Ontology" . + "ftp://hgdownload.cse.ucsc.edu/goldenPath/"^^ . + "International Classification of Diseases for Oncology" . + . + "The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of \"GO content\" meetings at which substantial changes in the ontologies are discussed and made."^^ . + . + . + "100291"^^ . + . + . + . + "MultiCellDS collection" . + . + . + . + . + "microarray" . + . + "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments."^^ . + . + . + . + "Physiome Model Repository workspace" . + "^DBCOND\\d+$"^^ . + "kegg.rclass" . + . + . + . + . + "http://purl.obolibrary.org/obo/MCRO_"^^ . + . + "https://publons.com/publon/"^^ . + . + . + . + "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id="^^ . + "false"^^ . + . + "ccf" . + "Leszek Vincent" . + "http://www.bioinsilico.org/cgi-bin/CAPSDB/getCAPScluster?nidcl=$1"^^ . + . + "Rat Genome Database strain" . + . + "ontology" . + "^\\d{7}$"^^ . + "sharesAuthorInstitutionWith"^^ . + . + . + . + . + "protein" . + "false"^^ . + . + . + . + . + . + "3000045"^^ . + "drugbank.salt" . + "ToxoDB" . + "12dgr161"^^ . + . + . + "false"^^ . + "An ontology for the description of Drosophila melanogaster phenotypes."^^ . + . + . + "^MF_\\d+$"^^ . + . + . + "gene expression" . + . + "An application ontology to cover all aspects of malaria as well as the intervention attempts to control it."^^ . + . + . + . + "0000030"^^ . + "biology" . + . + . + . + . + "MNXR101574"^^ . + "life science" . + "Janna Hastings" . + "genomics" . + . + "life science" . + "National Drug File - Reference Terminology" . + . + . + . + . + . + . + . + "cellosaurus" . + . + "http://yeastrc.org/pdr/viewProtein.do?id=$1"^^ . + . + "yid" . + . + . + . + "http://purl.obolibrary.org/obo/DOID_"^^ . + "91005"^^ . + "planp" . + . + . + "KEGG Disease" . + . + "^cpd\\d+$"^^ . + . + "metabolomics" . + . + "G00123"^^ . + . + . + . + "false"^^ . + . + . + "Laurent Duret" . + . + . + "geoinformatics" . + "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=$1"^^ . + . + "co_323" . + . + . + . + . + "BacDive—the Bacterial Diversity Metadatabase merges detailed strain-linked information on the different aspects of bacterial and archaeal biodiversity."^^ . + . + "^\\d+$"^^ . + "2A"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/EPIO_"^^ . + . + . + . + "http://database.deepsolar.space:18080/dbs/nlfff/"^^ . + "obo" . + . + . + . + . + "http://purl.obolibrary.org/obo/PDRO_$1"^^ . + "true"^^ . + . + "Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow. It makes links to the Proteomics Exchange when possible."^^ . + . + . + . + . + . + "0000041"^^ . + . + . + . + "false"^^ . + "ontology" . + . + "Human Medical Genetics" . + . + "ProteomeXchange" . + . + . + . + . + . + . + . + "Transporter Classification Database" . + . + . + . + "scopus.author" . + . + . + "http://zinc15.docking.org/substances/"^^ . + "^\\d{8}$"^^ . + . + . + . + . + . + . + . + "longevity" . + . + . + "^\\d+$"^^ . + . + "TRQ"^^ . + . + "STRING (Search Tool for Retrieval of Interacting Genes/Proteins) is a database of known and predicted protein interactions.\r\nThe interactions include direct (physical) and indirect (functional) associations; they are derived from four sources:Genomic Context, High-throughput Experiments,(Conserved) Coexpression, Previous Knowledge. STRING quantitatively integrates interaction data from these sources for a large number of organisms, and transfers information between these organisms where applicable."^^ . + . + "^\\d*$"^^ . + . + "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."^^ . + . + . + "ontology" . + "A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies."^^ . + . + . + . + "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^ . + "^\\d{5}$"^^ . + "Geomames" . + . + . + "2004-2820"^^ . + . + "structure" . + . + . + . + "Activity Streams" . + "H3.03.00.0.00007"^^ . + . + . + . + . + . + . + . + . + "Zenodo" . + . + "^\\d{7}$"^^ . + . + . + . + . + "SoyBase is a repository for curated genetics, genomics and related data resources for soybean."^^ . + . + . + . + "mgi" . + . + "^\\d{7}$"^^ . + . + "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . + . + . + . + "MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides"^^ . + . + "authorList"^^ . + "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" . + . + "25011"^^ . + . + "classification" . + . + . + "https://cropontology.org/rdf/CO_339:"^^ . + . + . + . + . + . + . + . + . + "AY109603"^^ . + . + "false"^^ . + . + . + . + "inaturalist.taxon" . + . + . + "false"^^ . + . + "umls.cui" . + "http://purl.org/linked-data/cube#"^^ . + . + . + "SIDM01262"^^ . + . + "https://bioschemas.org/profiles/"^^ . + . + . + "paxdb.protein" . + "https://vectorbase.org/gene/$1"^^ . + . + . . - . - "http://purl.obolibrary.org/obo/AMPHX_$1"^^ . - . - . - "http://pax-db.org/#!protein/$1"^^ . - . - . - . - . - . - . - "dbd" . - "Wormpep" . - . - . - "fish" . - . - . - . - "andreadega/systems-biology-compiler"^^ . - . - . - . - "http://www.w3.org/2004/02/skos/core#$1"^^ . - . - "SubtiWiki" . - . - "microbiology" . - . - "fisheries science" . - . - "ScerTF" . - "cio" . - . - . - . - . - . - . - "cognitive neuroscience" . - . - "rna-seq" . - "Identifiers for proposals/projects at the Joint Genome Institute"^^ . - . - . - . - . - . - . - . - "Indications and other conditions in drugbank"^^ . - . - "cl3603"^^ . - . - . - . - "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1"^^ . - "UniPathway Reaction" . + . + "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank."^^ . "https://e-cyanobacterium.org/models/model/"^^ . - "merops.entry" . - "ontology" . - . - . - . - . - "mihail.anton@chalmers.se" . - . - "ontology" . - . - . - . - "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1"^^ . - . - . - "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . - . - . - . - "^\\d+$"^^ . - . - "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank."^^ . - . - "KEGG Enzyme" . - . + "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"^^ . + . + "odc.sci" . + . + . + . + "false"^^ . + "transgene" . + . + . + . + "gene" . + . + . + . + "^\\d+\\-\\d+\\-\\d+$"^^ . + "http://purl.obolibrary.org/obo/CTO_"^^ . + . + . + "https://biomodels.net/vocab/idot.rdf#"^^ . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + . + "FxnI151FMs"^^ . + . + . + "http://www.wikidata.org/entity/"^^ . + . + . + . + "molecular biology" . + . + "Thomas Lütteke" . + . + "Ontology about the development and life stages of the C. elegans"^^ . + . + "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace. \n\nThe GOLD (Genomes OnLine Database)is a resource for centralized monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references metadata associated with samples."^^ . + . + "^\\d{6}$"^^ . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."^^ . + "dna" . + . + . + "eugenes" . + "anatomy" . + . + . + . + . + . + . + "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_"^^ . + . + . + . + . + . + "life science" . + . + . + "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$"^^ . + "https://thebiogrid.org/interaction/"^^ . + . + . + . + . + . + "true"^^ . + . + . + "TAO_RETIRED" . + "encode" . + . + "otl" . + "http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1"^^ . + . + . + "00620027"^^ . + "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:"^^ . + . + . + "https://www.phenxtoolkit.org/protocols/view/"^^ . + "false"^^ . + . + "biopesticides" . + "0000001"^^ . + "LCL-2085"^^ . + . + . + . + "linguist" . + . + . + . + . + . + . + . + "0187632"^^ . + . + . + . + . + . + "^[A-Za-z0-9+_.%-:]+$"^^ . + "identifier for an academic research group issued by the CNRS"^^ . + . + . + . + . + "mmusdv" . + . + . + . + "^\\d{7}$"^^ . + . + . + . + "Rebecca Jackson" . + . + . + . + . + . + "^\\d{7}$"^^ . + "isDocumentRelatedTo"^^ . + "http://www.cghtmd.jp/CGHDatabase/mapViewer?hid=$1&aid=%t&lang=en"^^ . + "true"^^ . + . + "awalker@apa.org" . + "http://www.knapsackfamily.com/knapsack_core/information.php?word=$1"^^ . + "The Paleobiology Database seeks to provide researchers and the public with information about the entire fossil record. It stores global, collection-based occurrence and taxonomic data for marine and terrestrial animals and plants of any geological age, as well as web-based software for statistical analysis of the data."^^ . + . + "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . + . + . + "chemistry" . + "https://bioregistry.io/metaregistry/go/$1"^^ . + . + . + . + . + "false"^^ . + "false"^^ . + . + "^\\d+$"^^ . + . + . + "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid=$1"^^ . + . + "database" . + "https://flybase.org/reports/FBtc"^^ . + "biomedical science" . + . + "biology" . + "false"^^ . + . + . + . + "^ENSGT\\d+$"^^ . + . + . + . + . + "ontology" . + . + "false"^^ . + "contact@bacdive.de" . + "^[A-Z]{1,2}\\d{5}$"^^ . + "^\\d{7}$"^^ . + "NCBI Taxonomy" . + . + "Adnan Malik" . + . + . + . + . + "Robert Court" . + . + . + . + "structure" . + "structure" . + . + . + . "chemical" . - . - . - . - . - "dna" . - . - "^M[0-9]{4,}$"^^ . - "https://data.4dnucleome.org/biosources/$1"^^ . - . - "X58356"^^ . - "http://purl.obolibrary.org/obo/TXPO_"^^ . - . - . - . - . - . - . - . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME"^^ . - "proteomics" . - . - "eol" . - . - . - "biology" . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - "PWY3O-214"^^ . - "Multiple alignment" . - "102l"^^ . - . - . - "cryopreserved" . - "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1"^^ . - . - . - . - . - "ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."^^ . - . - . - . - "false"^^ . - . - "http://www.cazy.org/$1.html"^^ . - . - "g.gkoutos@gmail.com" . - "false"^^ . - "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^ . - . - "Diagnostic and Statistical Manual of Mental Disorders (5th Edition)" . - "ricenetdb.mirna" . - "bfo" . - "odor" . - . - . - . - . + . + "treefam" . + . + "ontology" . + . + . + . + . + "^C\\d+$"^^ . + . + "A web-developer centric archive of prefixes and URI prefixes" . + "Alzforum Mutations" . + "Banana ontology" . + . + "life science" . + . + . + . + . + . + . + "https://w3id.org/reproduceme#$1"^^ . + . + "DataCite Ontology" . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/books/$1"^^ . + . + . + . + . + . + . + . + "http://www.xmetdb.org/xmetdb/protocol/$1"^^ . + . + . + . + "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/)."^^ . + . + . + . + "CHEMROF is an ontological framework for Chemical Entities Mixtures Reactions Ontological Framework. This OWL ontology is an automated Translation of the source LinkML schema, https://w3id.org/chemrof"^^ . + "https://civicdb.org/links/diseases/$1"^^ . + . + . + "https://pharmacodb.ca/tissues/"^^ . + . + . + . + "ChEMBL-Cells" . + . + "C34"^^ . + . + . + "Ctenophore Ontology" . + "https://web.www.healthdatagateway.org/dataset/$1"^^ . + . + . + . + . + "false"^^ . + "Genomics Cohorts Knowledge Ontology" . + "https://metacyc.org/compound?orgid=META&id=$1"^^ . + "ThoracicArtery"^^ . + "https://www.thaiclinicaltrials.org/show/"^^ . + "ontology" . + "cpc" . + . + . + . + "http://www.cellresource.cn/cellsearch.aspx?sc=1&where=$1"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OPL_"^^ . + "transcriptomics" . + _:Na03b38d0ceb5428ca2af0a10110b77e8 . + "saddan"^^ . + "oclc" . + . + . + . + "ISO Object Identifier" . + . + . + "Encyclopedia of DNA Elements" . + "cancer" . + . + "lpt" . + . + . + . + . + . + "henriette007@ebi.ac.uk" . + "https://www.datanator.info/gene/"^^ . + . + . + "Jeffrey A. Detras" . + "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie="^^ . + . + . + "biomedical science" . + "National Xenopus Resource" . + "https://lincs.hms.harvard.edu/db/cells/$1"^^ . + "neurobiology" . + "ICD9_2005" . + . + . + . + "false"^^ . + "Epilepsy and Seizure Ontology" . + "fetus" . + . + . + . + . + "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#$1"^^ . + . + "Oryzabase Reference" . + . + "Time Ontology in OWL" . + . + . + . + . + . + . + "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"^^ . + "ontology" . + . + . + . + . + . + . + "GXA Gene" . + "genome" . + "false"^^ . + "http://www.w3.org/ns/oa#"^^ . + . + . + . + "genotype" . + "subject agnostic" . + "Wormpep" . + . + "https://nanocommons.github.io/identifiers/registry#"^^ . + "https://sed-ml.org/urns.html#format:$1"^^ . + . + "https://www.flymine.org/come/entry?gn=$1"^^ . + . + "http://www.genome.jp/dbget-bin/www_bget?aaindex:$1"^^ . + . + "http://purl.obolibrary.org/obo/PGDSO_"^^ . + . + . + . + . + . + . + . + "ontology" . + . + "true"^^ . + "https://www.picb.ac.cn/limore/cellLines/single?para="^^ . + . + "1"^^ . + . + . +_:Nd282c8c166964c4586fa4146207b2dc9 "bert.van.nuffelen@tenforce.com" . + . + . + "life science" . + . + "biomedical science" . + "life science" . + . + . + "foodb" . + . + . + . + "sedml.format" . + . + "environmental science" . + . + . + . + "164750"^^ . + "The NIH registration number should be used on all NIH competing applications and annual progress reports to identify the stem cell line proposed for use. Identify the specific line(s) from the Registry using the NIH Registration Number (e.g., 0001), in the specified location in the application (from homepage)"^^ . + "Browser for the periodic table of the elements"^^ . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l=$1"^^ . + . + . + "https://vocab.org/vann/$1"^^ . + . + "aclame" . + . + "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana."^^ . +_:N28837f905bbe4f449cd65892310641e6 "support@bioontology.org" . + . + . + "^\\d{8}$"^^ . + "Scientific research institute for neuroscience, genetics, immunology, plant biology and more."^^ . + "Groundnut Trait Dictionary in template v5 - ICRISAT/ISRA/DARS - Sept 2015"^^ . + . + . + . + "https://drks.de/search/en/trial/$1"^^ . + . + . + "dto" . + "bdsc" . + "^\\d+$"^^ . + . + . + . + . + "cryoem" . + "Exposure ontology" . + "hybrid" . + . + "false"^^ . + "uniprot.database" . + "physiology" . + . + . + . + "https://gen3.theanvil.io/ga4gh/drs/v1/objects/$1"^^ . + . + . + . + . + . + "https://biopragmatics.github.io/providers/sfam/"^^ . + "data management" . + . + "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=$1"^^ . + . + "ppdb" . + . + "coriell" . + "http://scop.berkeley.edu/sccs="^^ . + . + "transgenic" . + . + . + . + . + "https://lincs.hms.harvard.edu/db/datasets/$1"^^ . + "structure" . + . + "http://www.phosphosite.org/siteAction.do?id=$1"^^ . + . + "pid" . + "redfly" . + . + . + "parasitology" . + . + . + "Tiffany J. Callahan" . + "OIDs provide a persistent identification of objects based on a hierarchical structure of Registration Authorities (RA), where each parent has an object identifier and allocates object identifiers to child nodes."^^ . + "obo" . + . + "^HGVST\\d+$"^^ . + "false"^^ . + "phylogeny" . + "Jennifer L Harrow" . + "SwissRegulon" . + . + . + . + "obo" . + . + . + . + . + "0001021"^^ . + . + "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . + . + "https://www.ncbi.nlm.nih.gov/genome/$1"^^ . + "^\\d{7}$"^^ . + . + . + "transcriptomics" . + . + "population dynamics" . + . + . + "https://cordis.europa.eu/article/id/"^^ . + "^IID\\d+$"^^ . + . + "Voc4Cat is a [SKOS](https://www.w3.org/TR/2009/REC-skos-reference-20090818/) vocabulary for the catalysis disciplines. The vocabulary was created in the [NFDI4Cat](http://www.nfdi4cat.org/) initiative. The first collection of terms was published in June 2023 with a focus on photo catalysis. Our goal is to continuously extend the vocabulary to other areas of catalysis and related disciplines like chemical engineering or materials science."^^ . + . + . + . + . + . + . + "false"^^ . + "The Health Data Research Innovation Gateway (the 'Gateway') provides a common entry point to discover and enquire about access to UK health datasets for research and innovation. It provides detailed information about the datasets, which are held by members of the UK Health Data Research Alliance, such as a description, size of the population, and the legal basis for access."^^ . + "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters."^^ . + . + . + "USA National Service Center Number" . + "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" . + . + . + . + . + . + "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1"^^ . + "Subcellular Anatomy Ontology" . + . + "^[1-9][0-9]{14}$"^^ . + "Dimension"^^ . + "COSMIC, the Catalogue Of Somatic Mutations In Cancer, is the world's largest and most comprehensive resource for exploring the impact of somatic mutations in human cancer"^^ . + "https://eds.gene.le.ac.uk/home.php?select_db=$1"^^ . + . + . + "6"^^ . + . + . + "ird.segment" . + . + . + "Cell line collections (Providers)"^^ . + . + . + "http://purl.obolibrary.org/obo/PPO_"^^ . + "^\\w\\d+$"^^ . + . + . + . + "false"^^ . + "ontology" . + . + . + "ViTa is a database which collects virus data from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa also rovide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons."^^ . + . + . + "scopus" . + "Nucleotide" . + "The VIRsiRNA database contains details of siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region."^^ . + "https://www.perkinelmer.com/searchresult?searchName="^^ . + . + "genome" . + "https://www.ebi.ac.uk/ega/studies/$1"^^ . + . + . + "http://www.w3.org/2003/11/swrl#$1"^^ . + . + . + . + "https://signor.uniroma2.it/relation_result.php?id="^^ . + "Non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant strains essential for basic biomedical research. Users may browse by strain, gene, phenotype, or human disease. Its primary objective is to establish and manage a unified repository for maintaining medically relevant mouse mutants and making them available to the scientific community. Therefore, EMMA archives mutant strains and distributes them to requesting researchers. EMMA also hosts courses in cryopreservation, to promote the use and dissemination of frozen embryos and spermatozoa. Dissemination of knowledge is further fostered by a dedicated resource database. Anybody who wants their mutant mouse strains cryopreserved may deposit strains with EMMA. However depositors must be aware that these strains become freely available to other researchers after being deposited.With more than 8400 mutant mouse strains and asmall but increasing number of rat mutant strains available, EMMA is the primary mouse repository in Europe and the third largest non-profit repository worldwide. [from RRID]"^^ . + . + . + "oboformat" . + "Integrated Microbial Genomes Taxon" . + . + "yongqunh@med.umich.edu" . + . + . + . + . + . + . + . + "Environment Ontology for Livestock" . + . + . + . + . + . + "SKOS is an area of work developing specifications and standards to support the use of knowledge organization systems (KOS) such as thesauri, classification schemes, subject heading lists and taxonomies within the framework of the Semantic Web"^^ . + . + . + "An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagnostic guidelines"^^ . + . + . + . + . + . + "kestrelo" . + . + "genome" . + . + "^\\d+$"^^ . + . + "uBio NameBank" . + "clinical studies" . + . + . + . + . + . + . + "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_"^^ . + "^\\w+$"^^ . + . +_:N92cb3dfb7c5b426f8caf565b44bc8ab9 "Bgee team" . + . + . + "S000002493"^^ . + . + . + "MIRT000002"^^ . + . + . + "mfmo" . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_367:"^^ . + . + . + "http://purl.obolibrary.org/obo/IDOMAL_$1"^^ . + . + . + . + . + . + . + "wikidata.property" . + "software engineering" . + "false"^^ . + . + . + "Lepidoptera Anatomy Ontology" . + "Human Developmental Stages" . + . + . + . + _:N267f4cae13944491a75150835ad69478 . + . + . + . + . + . + . + "erm" . + . + . + "GLAndersen@lbl.gov" . + . + "informatics" . + . + . + . + . + "^\\d+$"^^ . + "^\\d+$"^^ . + . + "ICD-O" . + "ontology" . + "Metabolomics Workbench Study" . + . + "identifier for chemicals linked to information on occurrence in plants"^^ . + . + . + . + "virology" . + . + . + . + "life science" . + . + . + . + . + . + "ENSFM00500000270089"^^ . + "0000031"^^ . + . + "monique.zahn@sib.swiss" . + . + . + . + "nomen" . + "This database aims to record all published accounts of variants resulting in osteogenesis imperfecta. Such variants occur in the COL1A1, COL1A2, CRTAP, FKBP10, LEPRE1 and PPIB genes."^^ . + "https://www.ebi.ac.uk/ega/studies/"^^ . + . + . + . + . + . + . + . + . + . + . + "true"^^ . + "biomedical science" . + . + . + "0000001"^^ . + . + . + "genomics" . + "Mathias Uhlen" . + "small molecule" . + . + . + "http://www.bootstrep.eu/ontology/GRO#$1"^^ . + . + "http://id.who.int/icd/entity/$1"^^ . + "The identifier for an observation in iNaturalist"^^ . + . + "http://bigg.ucsd.edu/models/universal/metabolites/"^^ . + . + "s_mart_db" . + . + . + "thesaurus" . + "https://models.physiomeproject.org/exposure/$1"^^ . + . + "2381/12775"^^ . + "biomedical science" . + . + . + "disdriv" . + . + . + . + . + . + _:N7c9c314d0f544ed4a266982796905960 . + . + . + . + . + . + "0000390"^^ . + . + . + "Laboratory of Systems Pharmacology Compound" . + "ubio.namebank" . + . + . + . + . + . + . + "animal physiology" . + "https://nanbyodata.jp/disease/NANDO:"^^ . + "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."^^ . + . + "mcc" . + "ACM1_HUMAN"^^ . + . + "Lipid"^^ . + . + "The cross-references section of UniProtKB entries displays explicit and implicit links to databases such as nucleotide sequence databases, model organism databases and genomics and proteomics resources."^^ . + . + "https://pathbank.org/view/"^^ . + . + "https://go.drugbank.com/metabolites/$1"^^ . + "Amphibian gross anatomy" . + . + . + "A controlled vocabulary to describe phenotypic traits in plants."^^ . + "jstor" . + . + . + . + "false"^^ . + . + . + . + . + . + "MHC Restriction Ontology" . + "Yuki Yamagata" . + "https://ligandbook.org/package/"^^ . + . + "https://www.ndexbio.org/viewer/networks/"^^ . + . + "https://www.re3data.org/repository/$1" . + "degradome" . + . + . + . + . + . + "0000639"^^ . + . + "stock" . + "KEGG Pathways Database" . + . + "molecular" . + "http://www.knapsackfamily.com/knapsack_core/information.php?word="^^ . + "rutgeraldo@gmail.com" . + "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object="^^ . + "CTD Gene" . + . + "The ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) contains terms used to describe the cuticle - as a single anatomical structure - and the skeletal muscle system, to be used in insect biodiversity research."^^ . + "bspo" . + . + . + . + "1000000"^^ . + "database" . + . + . + . + . + . + "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder."^^ . + "The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest.\n\nCCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). Accordingly, CCO classes and relations are heavily constrained by the BFO framework, from which it inherits much of its basic semantic relationships."^^ . + . + . + . + "A type for entries in the Bioregistry's metaregistry." . + . + "NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature."^^ . + . + . + "chickenqtldb" . + . + "PDBsum; at-a-glance overview of macromolecular structures" . + "The OMOP Common Data Model allows for the systematic analysis of disparate observational databases. The concept behind this approach is to transform data contained within those databases into a common format (data model) as well as a common representation (terminologies, vocabularies, coding schemes), and then perform systematic analyses using a library of standard analytic routines that have been written based on the common format."^^ . + "https://identifiers.org/$1:$2" . + . + . + "EUCTR" . + . + "charprot" . + . + . + "The Terminologia Histologica (TH) is the controlled vocabulary for use in cytology and histology. It was intended to replace Nomina Histologica. [wikipedia]"^^ . + . + "genome" . + . + . + "Human Endogenous Retrovirus Database" . + . + . + . + . +_:Nf81ca7c123934d1fad4db7af794f82eb "Crop Ontology Helpdesk" . + . + . + . + . + . + "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0="^^ . + . + . + . + "ECCODE" . + . + . + . + . + . + . + . + "^[A-Za-z-0-9_]+(\\@)?$"^^ . + "false"^^ . + . + . + . + "0000052"^^ . + . + . + "https://depmap.org/portal/cell_line/$1"^^ . + "Influenza Virus Database" . + . + "hsa-mir-200a"^^ . + . + . + "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references expressed sequence tag (EST) information."^^ . + "nhcdr" . + . + "https://prosite.expasy.org/$1"^^ . + . + . + . + "false"^^ . + "false"^^ . + "https://scicrunch.org/resolver/RRID:BCBC_"^^ . + "Ada Hamosh" . + "animal" . + . + "https://bioregistry.io/resolve/github/issue/$1"^^ . + "HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein."^^ . + . + . + . + . + "SNOMEDCT_US_2016_03_01" . + "structure" . + . + . + . + . + . + . + . + . + . + . + . + "subject agnostic" . + "Regulation of Transcription"^^ . + . + . + . + . + . + "false"^^ . + "RID1"^^ . + . + "TubercuList knowledge base" . + "0000144"^^ . + . + . + . + . + . + . + . + "agriculture" . + "life science" . + "pancreatic islet" . + . + . + "^PACTR\\d+$"^^ . + . + . + . + . + . + "gro" . + . + "pd_st" . + "Ontology for Parasite LifeCycle" . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information."^^ . + . + . + "NCI Thesaurus (NCIt) provides reference terminology covering vocabulary for clinical care, translational and basic research, and public information and administrative activities, providing a stable and unique identification code."^^ . + . + "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI)."^^ . +_:N748c45da2ac44701ab1793f47c9389da "Eionet Helpdesk" . + . + . + . + . + . + "false"^^ . + "topics" . + . + . + "life science" . + . + "002804"^^ . + "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=$1"^^ . + . + "^\\d+$"^^ . + "https://n2t.net/$1:" . + . + . + "^[0-9]*$"^^ . + "gpmdb" . + . + . + . + . + . + "subject agnostic" . + "false"^^ . + . + "UniProt Subcellular Locations" . + . + . + . + "BiGG Compartment" . + . + . + "Food-Biomarker Ontology" . + . + . + "false"^^ . + . + "traumatology" . + . + . + . + . + "95-0166C6"^^ . + . + "10343835"^^ . + "false"^^ . + . + . + "ontology" . + . + . + "The ProteomeXchange provides a single point of submission of Mass Spectrometry (MS) proteomics data for the main existing proteomics repositories, and encourages the data exchange between them for optimal data dissemination."^^ . + . + "The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications."^^ . + "genomics" . + "ontology" . + . + "00020134"^^ . + . + . + "pathwaycommons" . + "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"^^ . + . + . + . + "protein" . + . + . + "DDInter20"^^ . + "Glycosciences.DB" . + . + "datanator.gene" . + "An ontology of human and animal behaviours and behavioural phenotypes"^^ . + . + "Cell Line Ontology [derivative]" . + . + . + . + "This is a record of the Bilateria anatomy terminology and ontology. We have been unable to find any further information about this resource."^^ . + . + . + "botany" . + . + "Prefix Commons" . + "obo" . + "ontology" . + . + . + . + . + "vsdb" . + . + . + . + "^TS-\\d+$"^^ . + "true"^^ . + . + "ontology" . + . + . + . + . + "phenxtoolkit" . + . + "FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing research into craniofacial development and malformation. It serves as a community resource by generating large datasets of a variety of types and making them available to the wider research community via this website. Practices emphasize a comprehensive and multidisciplinary approach to understanding the developmental processes that create the face. The data offered spotlights high-throughput genetic, molecular, biological, imaging and computational techniques. One of the missions of this consortium is to facilitate cooperation and collaboration between projects."^^ . + . + . + "false"^^ . + . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_anat_$1"^^ . + . + . + "dna" . + "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/"^^ . + . + "proteomics" . + . + . + . + "apollosv" . + . + . + "https://biopragmatics.github.io/debio/"^^ . + . + . + . + . + "genes" . + . + . + . + . + . + "false"^^ . + . + "Neuronal cell types"^^ . + . + . + . + "https://bioregistry.io/gard:"^^ . + . + "pathway" . + . + . +_:N6ec02d7552d843f1b768c8c76746301a "J.Bard@ed.ac.uk" . + . + "PD000596"^^ . + . + . + "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId=$1"^^ . + . + . + . + "life science" . + . + "https://cn.dataone.org/cn/v2/resolve/{$1}"^^ . + . + "sed-ml.level-1.version-1"^^ . + . + "0000001"^^ . + . + . + . + . + . + . + . + "life science" . + . + . + "87"^^ . + "sequence" . + . + . + "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId=$1"^^ . + "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way."^^ . + . + "false"^^ . + "imsr.apb" . + . + . + . + "ontology" . + . + . + . + "^MSMEG\\w+$"^^ . + "synthetic biology" . + . + "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps."^^ . +_:Ne20487b8cfc54ee38941aca52616a216 "Pierre Sprumont" . + . + . + . + . + . + "^\\d+$"^^ . + "PRINTS compendium of protein fingerprints" . + . + . + "life science" . + "https://gnomad.broadinstitute.org/variant/"^^ . + . + "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=$1"^^ . + "0000069"^^ . + . + . + . + . + "https://www.internationalgenome.org/data-portal/sample/$1"^^ . + . + . + "life science" . + . + . + "false"^^ . + "^\\d{7}$"^^ . + "Friend of a Friend" . + "Rice Genome Annotation Project" . + "https://viperdb.org/Info_Page.php?VDB="^^ . + "http://func.mshri.on.ca/fly/genes/list_functional_scores/"^^ . + . + . + . + "genome" . + "false"^^ . + "https://www.ncbi.nlm.nih.gov/nlmcatalog/"^^ . + . + . + "false"^^ . + . + . + . + . + "Snapshot" . + . + . + "https://openalex.org/$1"^^ . + . + . + . + . + "https://aopwiki.org/relationships/$1"^^ . + "protein" . + "http://purl.obolibrary.org/obo/ORNASEQ_$1"^^ . + "PANTHER Node" . + . + . + . + . + . + "worfdb" . + "model" . + "ontology" . + "Probes and Drugs" . + "http://www.probonto.org/ontology#PROB_"^^ . + . + . + "false"^^ . + . + "NIF Standard Ontology: Cognitive Function" . + "Integrated Microbial Genomes Gene" . + . + "reagent" . + "false"^^ . + "false"^^ . + . + . + "1000001"^^ . + "^\\d+$"^^ . + "false"^^ . + "https://www.kaggle.com/$1"^^ . + . + "anatomy" . + "http://purl.bioontology.org/ontology/HCPCS/"^^ . + "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?"^^ . + . + "life science" . + "Sunflower ontology" . + . + . + "TB2:S1000"^^ . + . + . + . + . + "nucc.taxonomy" . + . + "pdb.ligand" . + "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Allele"^^ . + "obo" . + "computational biology" . + . + "128796-39-4"^^ . + . + . + . + . + "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster."^^ . + . + . + . + . + . + . + . + . + "An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data across sources and scales."^^ . + . + . + . + . + "UR000124451"^^ . + "lipidbank" . + "https://www.kerafast.com/Search?SearchTerm="$1""^^ . + "health science" . + . + "PMCID" . + . + . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments."^^ . + . + "Teleost taxonomy ontology" . + . + . + . + . + . + "The mission of the Clinical Trials Registry-India (CTRI) is to ensure that all clinical trials conducted in India are prospectively registered, i.e. before the enrolment of the first participant. Additionally, post-marketing surveillance studies, BA/BE studies as well as clinical studies as part of PG thesis are also expected to be registered in the CTRI. (from homepage)\n\nNote that the identifier in this semantic space is not the one used in the webpages"^^ . + . + . + . + . + "EAWAG Biocatalysis/Biodegradation Database" . . - "false"^^ . - "RiceCyc is a catalog of known and/or predicted biochemical pathways from rice (Oryza sativa). Pathways and genes presented in this catalog are primarily based on the annotations carried out by Gramene database project"^^ . - "1"^^ . - "ontology" . - . - . - . - "1"^^ . - . - . -_:Nf22035a46e7c43d2b632a2ab5a697c5e "Stephen Larson" . - . - . - . - . - . - "false"^^ . - . - "false"^^ . - . - "ito" . - . - "G8944"^^ . - "bitbucket" . - "protein" . - . - . - . - . - . - . - . - "ICD9" . - "false"^^ . - "microbiology" . - . - . - "Cellosaurus Registry" . - . - . - "inaturalist.place" . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/nucest/"^^ . - . - . - "ontology" . - . - . - "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1"^^ . - "Odor Molecules DataBase" . - "false"^^ . - . - . - "0001655"^^ . - . - "orchard@ebi.ac.uk" . - . - "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." . - . - . - "CATH Protein Structural Domain Superfamily" . - "IntAct provides a freely available, open source database system and analysis tools for protein interaction data."^^ . - . - . - . - . - . - . - . - "Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens" . - "chemical biology" . - . - "support@bel.bio" . - . - "http://www.ncbi.nlm.nih.gov/clinvar?term=$1"^^ . - . - . - "The database VBASE2 provides germ-line sequences of human and mouse immunoglobulin variable (V) genes."^^ . - . - . - . - "KEGG COMPOUND" . - "^\\d+$"^^ . - . - . - . - . - "snap" . - . - . - . - . + "^[0-9a-fA-F]{32}$"^^ . + . + "mathias.uhlen@scilifelab.se" . + . + . + . + . + . + . "https://bioregistry.io/d1id:"^^ . - . - . - . - . - . - "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene="^^ . - "false"^^ . - . - . - . + . + . + . + "FlyBase_Cell_line" . + "hbvar" . + "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/"^^ . + . + "17503"^^ . + _:N3830f9a7c24d4ca0a42acc9fe0c217a9 . + . +_:N58611fcf82194703923654500373e06f "edd@usefulinc.com" . + . + "protein" . + "NIF Standard Ontology: Subcellular Entities" . + . + "ontology" . + "false"^^ . + . +_:N48b7279c0aaa4cfba617c45096343b1a "chEBI" . + "ontology" . + . + . + . + . + . + "https://bioregistry.io/phosphopoint.kinase:"^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "false"^^ . + . + "215"^^ . + . + "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments."^^ . + . + _:N65fbd436827845f5847a7d3a01a8aa66 . + . + . + "molecular chemistry" . +_:N717444d80a984999b81a04f5f075fef5 "Frédérick Giasson" . + "david.wishart@ualberta.ca" . + "This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures)."^^ . + . + . + . + . + . + . + "obo" . + "http://purl.obolibrary.org/obo/DIDEO_$1"^^ . + "https://cropontology.org/rdf/CO_339:$1"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + "BacDive" . + . + . + "http://www.molbase.com/en/index.php?app=search&search_keyword=$1"^^ . + . + "interaction" . + "3966782"^^ . + . + "http://www.pantree.org/node/annotationNode.jsp?id="^^ . + . + "Thermo Fisher Scientific" . + "pathway" . + "DermO is an ontology with broad coverage of the domain of dermatologic disease and we demonstrate here its utility for text mining and investigation of phenotypic relationships between dermatologic disorders"^^ . + . + . + . + . + . + . + . + . + "CRISP is a terminology used for indexing biomedical information. CRISP contains over 8,000 preferred terms that are grouped hierarchically into 11 domains."^^ . + "Gm00047"^^ . + "Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies."^^ . + . + "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1"^^ . + "A subspace of Metabolic Atlas for compartment-specific records for metabolites."^^ . + . + . + . + . +_:Ncc707838a44a4b9caf3c1e9d821712ea "helpdesk@cropontology-curationtool.org" . + . + . + . + "Golm Metabolome Database" . + "^\\d{7}$"^^ . + . + . + . + "https://cropontology.org/rdf/CO_337:$1"^^ . + . + . + . + . + . + "genomics" . + . + "gene" . + . + "mesh.2012" . + "^\\d+$"^^ . + . + "ino" . + "metabolites" . + . + "data analysis service" . + . + "YeTFasCo" . + . + . + . + . + "http://purl.obolibrary.org/obo/OGMS_"^^ . + . + "http://purl.obolibrary.org/obo/PLO_"^^ . + . + "http://www.viprbrc.org/brc/viprStrainDetails.do?strainName=$1&decorator=arena"^^ . + "false"^^ . + "AAindex" . + . + "proteomicsdb.protein" . + . + "^\\d+$"^^ . + "^\\d+$"^^ . + . + . + . + . + "tahh" . + . + "FuncBase Human" . + . + . + "gene" . + "metagenomics" . + . + "^\\w+$"^^ . + "life science" . + "https://mmp.sfb.uit.no/databases/marref/#/records/"^^ . + . + . + "structrual bioinformatics" . + . + . + "^\\d+$"^^ . + . + "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1"^^ . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id="^^ . + . + "Cube db" . + . + "1915"^^ . + . + . + "true"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "https://ccg.epfl.ch/cgi-bin/snp2tfbs/snpviewer_form_parser.cgi?snpid="^^ . + "A01M1/026"^^ . + "gorel" . + "https://coconut.naturalproducts.net/compound/coconut_id/$1"^^ . + . + "The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank."^^ . +_:N3d1b2d44321449298ccf2afdf5ddcbea "helpdesk@cropontology-curationtool.org" . + "http://purl.obolibrary.org/obo/MIRO_$1"^^ . + . + . + "https://eol.org/pages/"^^ . + . + . + . + . + "d4akea1"^^ . + "metabolomics" . + "http://solgenomics.net/phenome/locus_display.pl?locus_id="^^ . + "Developmental stages of the Zebrafish"^^ . + "^\\d+$"^^ . + . + . + . + . + . + "International Medical Device Regulators Forum" . + . + . + . + "0010039"^^ . + . + . + . + "https://goldbook.iupac.org/terms/view/$1"^^ . + . + "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1"^^ . + "false"^^ . + . + . + . + . + "https://www.langual.org/langual_thesaurus.asp?termid=$1"^^ . + . + . + "ghr" . + "gwascentral.study" . + . + "idomal" . + "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. Gene Wiki can be accessed in wikipedia using Gene identifiers from NCBI."^^ . + . + "http://snomed.info/id/"^^ . + . + "identifier of a compound in the UniChem database"^^ . + . + . + "JMChandonia@lbl.gov" . + "Vital Sign Ontology" . + . + . + "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . + . + . + . + "false"^^ . + "false"^^ . + . + . + "enrique.blanco@crg.eu" . + . + "true"^^ . + . + "doqcs.pathway" . + "http://purl.obolibrary.org/obo/MFO_"^^ . + . + . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/MIAPA_$1"^^ . + "0745-4570"^^ . + "FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data"^^ . + . + . + "53504"^^ . + "gramene.taxonomy" . + . + . + "aellenhicks@gmail.com" . + . + . + . + . + "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."^^ . + "https://w3id.org/aio/$1"^^ . + . + "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=$1"^^ . + . + "ontology" . + "http://purl.obolibrary.org/obo/ZP_$1"^^ . + . + . + . + . + "false"^^ . + "ORCiD" . + . + . + . + . + _:N753c4de613d34f5896c1c13730649c75 . + "false"^^ . + "ontology" . + . + "Erik.Segerdell@cchmc.org" . + "^\\d{7}$"^^ . + "Lucas Leclere" . + . + "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch."^^ . + "rna" . + . + . + . + . + . + . + . + . + . + . + "co_343" . + "MCDS_S_0000000001"^^ . + "vann" . + . + . + . + "pathway" . + . + . + "false"^^ . + . + . + . + . + "SNOMEDCT_US_2022_07_31" . + "Crop Ontology Curation Tool" . + "https://cropontology.org/rdf/CO_347:"^^ . + . + . + "GeneTree" . + "^\\w+$"^^ . + . + "http://www.humanproteomemap.org/protein.php?hpm_id=$1"^^ . + . + . + . + "glida.ligand" . + . + . + . + "https://www.scopus.com/sourceid/"^^ . + . + "ontology" . + . + . + . + "The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)"^^ . + "cthoyt@gmail.com" . + . + . + . + "iso.3166" . + . + . + . + . + "nasa/kepler-exoplanet-search-results"^^ . + . + "Protein Ontology" . + . + . + "InterLex" . + "MIPF0000002"^^ . + . + . + . + "^EP\\d{4}$"^^ . + . + . + . + . + . + . + . + "NCI" . + . + . + . + . + "anatomy" . + . + "Sharkipedia Species" . + "ecyano.model" . + . + "false"^^ . + . + . + . + . + "lars.holm.nielsen@cern.ch" . + . + . + . + . + "proteins" . + "false"^^ . + . + . + . + "false"^^ . + "Human Proteome Map" . + . + "^[A-Z-a-z0-9]+$"^^ . + . + . + . . - "Kinetic Simulation Algorithm Ontology" . - "^\\d{7}$"^^ . - . - . - . - "genomics" . - . - . - . - . - . - "0001417"^^ . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "biomedical science" . - . - . - . - "false"^^ . - . - . - . - "protein" . - . - . - "te" . - . - "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."^^ . - "innatedb" . - . - "Paleobiology Database" . - . - "false"^^ . - "https://www.proteomicsdb.org/#human/proteinDetails/$1"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id="^^ . - . - . - . - . - . - . - . - . - "cryoem" . - . - . - . - . - "ontology" . - "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM="^^ . - "http://purl.obolibrary.org/obo/HABRONATTUS_"^^ . - . - "tol.webproj" . - . - "false"^^ . - _:Nb6c39353d8c84018a7010dde85517963 . - "false"^^ . - . - "smp-m3w9hbe"^^ . - "physiology" . - . - "comparative genomics" . - . - . - "protein" . - . - "developmental biology" . - . - . - . - "katy@indiana.edu" . - "gxa.expt" . - . - "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)"^^ . + . + "false"^^ . + "false"^^ . + . + "orphanet.ordo" . + . + . + . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data."^^ . + . + "false"^^ . + "Library of Congress Subject Headings (LCSH) has been actively maintained since 1898 to catalog materials held at the Library of Congress. (from homepage)"^^ . + "^NCT\\d{8}$"^^ . + "ontology" . + . + . + "https://idr.openmicroscopy.org/search/?query=Name:idr"^^ . + "^IRCT\\d+N\\d+$"^^ . + "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id="^^ . + . + . + "adms" . + "drug discovery" . + . + . + "http://purl.bioontology.org/ontology/NDDF/"^^ . + . + . + . + "false"^^ . + . + "https://www.ncbi.nlm.nih.gov/protein/"^^ . + "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=DNA"^^ . + "eNanoMapper ontology" . + "https://glyconavi.org/hub/?id=$1"^^ . + . + . + "ISNI is the ISO certified global standard number for identifying the millions of contributors to creative works and those active in their distribution, including researchers, inventors, writers, artists, visual creators, performers, producers, publishers, aggregators, and more. It is part of a family of international standard identifiers that includes identifiers of works, recordings, products and right holders in all repertoires, e.g. DOI, ISAN, ISBN, ISRC, ISSN, ISTC, and ISWC.\r\n\r\nThe mission of the ISNI International Authority (ISNI-IA) is to assign to the public name(s) of a researcher, inventor, writer, artist, performer, publisher, etc. a persistent unique identifying number in order to resolve the problem of name ambiguity in search and discovery; and diffuse each assigned ISNI across all repertoires in the global supply chain so that every published work can be unambiguously attributed to its creator wherever that work is described."^^ . + "NIF Standard Ontology" . + "OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012."^^ . + . + . + . + "http://www.peptideatlas.org/PASS/$1"^^ . + . + . + . + . + "EMEA/H/C/000181"^^ . + "http://icd9cm.chrisendres.com/index.php?action=search&srchtext=$1"^^ . + . + "240-17-488-3-4-12"^^ . + "false"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/MA_$1"^^ . + . + "false"^^ . + "pns12@hermes.cam.ac.uk" . + "^[A-Za-z0-9]+$"^^ . + . + . + . + . + . + . + . + . + . + "E13035"^^ . + . + "http://www.nematodes.org/nembase4/cluster.php?cluster="^^ . + "ontology" . + . + . + "American Type Culture Collection" . + . + "false"^^ . + "http://string.embl.de/interactions/"^^ . + "true"^^ . + . + "MLCommons Association" . + "16"^^ . + "The NRFC was established at ICAR-National Bureau of Fish Genetic Resources, Lucknow in the form of a research project entitled ‘Establishment of a National Repository at NBFGR, Lucknow for conservation and characterization of fish cell lines’ during 09 November, 2010 to 08 November, 2014 with the financial support from Department of Biotechnology, Govt. of India, New Delhi. NRFC aims to receive, authenticate, store and supply the fish cell lines to the researchers and academicians for Research & Development works and to serve as a National Referral Centre for fish cell lines in the country. NRFC also aims to provide need-based support for training and education to stakeholders. (from homepage)"^^ . + . + . + "^TC\\d+$"^^ . + "14"^^ . + "obo" . + "title"^^ . + . + "larvae" . + "ontology" . + . + . + . + . + . + "false"^^ . + "icldb" . + . + "cro" . + . + . + . + "https://bioregistry.io/cnrs:"^^ . + . + . + . + . + . + . + . + . + "MeDRA" . + "Mathias Brochhausen" . + . + "small molecule" . + "strain" . + . + . + . + . + . + . + . + . + "Alvin Walker" . + "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."^^ . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/OGSF_"^^ . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "dr.shorthair@pm.me" . + . + . + . + . + . + _:N6f401262a7d84d76b6c84f6fcb7f2f2f . + "prosite" . + "alistair.miles@linacre.ox.ac.uk" . + . + . + . + . + . + . + . + . + . + . + "HL7 External Code Systems" . + . + . + . + . + "mco" . + . + "FB00000917"^^ . + . + . + "The Cell Cycle DB" . + "2244"^^ . + "26753"^^ . + "true"^^ . + . + . + . + . + . + . + . + "https://www.biozol.de/en/product/"^^ . + . + "MaizeGDB is the maize research community's central repository for genetics and genomics information."^^ . + . + "https://massbank.jp/RecordDisplay?id="^^ . + . + "Samuel Friedman" . + . + . + . + "ontology" . + . + . + . + . + "^UPC\\d{5}$"^^ . + . + . + "massive" . + . + "https://civicdb.org/links/diseases/"^^ . + "A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon."^^ . + . + . + "pirsf" . + . + . + . + . + "125768"^^ . + . + . + . + . + . + . + . + "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan."^^ . + . + . + "^\\d{3}$"^^ . + . + . + "SNOMEDCT_US_2015_03_01" . + "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."^^ . + "http://www.allergome.org/script/dettaglio.php?id_molecule="^^ . + "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus."^^ . + "bila" . + "http://www.vbase2.org/vgene.php?id=$1"^^ . + . + . + "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae."^^ . + . + "0000198"^^ . + . + . + . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + "recombinant inbred rat" . + "Anatomical Therapeutic Chemical Classification System" . + "virmirdb" . + . + "atmospheric science" . + . + . + "GDS1234"^^ . + "Salk Institute for Biological Studies" . +_:Na482dcd018c24879b9da354f861d92d8 "radlex-feedback@lists.rsna.org" . + . + "taxonomy" . + . + . + "gene expression" . +_:N3830f9a7c24d4ca0a42acc9fe0c217a9 "American Medical Association" . + . + "biomedical science" . + . + "^\\d+$"^^ . + . + . + . + "georgeta.bordea@u-bordeaux.fr" . + "http://linkedlifedata.com/resource/umls/id/$1"^^ . + . + . + "IntAct Molecule" . + "ontology" . + "Human Protein Reference Database" . + "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013."^^ . + . + "https://www.ncbi.nlm.nih.gov/gtr/conditions/$1"^^ . + . + "obo" . + . + . + . + . + . + . + . + . + "Observation"^^ . + . + "https://zenodo.org/record/"^^ . + "https://biopragmatics.github.io/providers/scomp/$1"^^ . + "http://purl.obolibrary.org/obo/CHIRO_$1"^^ . + . + . + . + . + "MIRIAM Registry is an online resource created to catalogue data types (Gene Ontology, Taxonomy or PubMed are some examples), their URIs and the corresponding resources (or physical locations), whether these are controlled vocabularies or databases."^^ . + "http://www.ebi.ac.uk/efo/EFO_"^^ . + "Sebastian Koehler" . + . + "pmap.substratedb" . + . + . + . + . + . + . + . + "ontology" . + "Asset"^^ . + . + . + . + "anatomy" . + "wormbase" . + "jonrkarr@gmail.com" . + . + "0001998"^^ . + "Cell types that are provisionally defined by experimental techniques such as single cell transcriptomics rather than a straightforward & coherent set of properties."^^ . + . . - "^\\d{7}$"^^ . - "LMPR0102010012"^^ . - . - . - . - . - "ontology" . - . - "nextdb" . - . - "This database is a collection of protein-protein homo- and hetero-complexes as well as domain-domain structures. This issue of the database contains 17.024 entries (as of October 2007) of which 1350 are two-chain protein hetero-complexes, 7773 homodimers and 1589 are one-chain proteins parsed into two domains (domain structures)."^^ . - . - . - . - . - "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene."^^ . - . - . - "Progenetix" . - . - . + . + . + . + . + "100000"^^ . + . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information."^^ . + . + "http://edamontology.org/operation_$1"^^ . + "structure" . + . + "A Knowledge Resource for Innate Immunity Interactions and Pathways" . + "The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)"^^ . + . + . + . + . + . + . + "2000191"^^ . + "https://repeatsdb.org/structure/$1"^^ . + . + . + . + "protein" . + "GT10"^^ . + "false"^^ . + "https://bioregistry.io/treebase:"^^ . + "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1"^^ . + . + "Higher order grouping of Pfam families"^^ . + . + "iECABU_c1320"^^ . + . + "true"^^ . + . + "https://www.kazusa.or.jp/huge/gfpage/$1"^^ . + "^\\d+$"^^ . + . + . + "MicrosporidiaDB" . + "selventa" . + . + "^CPX-[0-9]+$"^^ . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "github.issue" . . - . - "Identifier of an object from the ASTD database."^^ . - . - "ontology" . - "https://bioregistry.io/bpdb:"^^ . - "Yeast Phenotype Ontology" . - "false"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/DOID_$1"^^ . - . - "Mark Jensen" . - . - "false"^^ . - "UBERON" . - . - . - . - . - . - . - . - . - . - "ProDom" . - . - . - . - "^\\d{7}$"^^ . - . - "http://purl.obolibrary.org/obo/ARO_"^^ . - "casent0106247"^^ . - . - "https://odc-sci.org/data/"^^ . - "phenotype" . - . - . - "false"^^ . - . - . - "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures."^^ . - . - . - . - "HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers."^^ . - "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available."^^ . - . - . - "http://www.w3.org/ns/odrl/2/"^^ . + . + . + . + . + "Philippine Health Research Registry" . + . + . + . + . + . + . + . + . + "cdpd" . + "wosid" . + . + "0001707"^^ . + . + . + . + "unipathway.compound" . + "metascience" . + "http://purl.obolibrary.org/obo/CLAO_$1"^^ . + . + "false"^^ . + . + . + "http://www.t3db.org/toxins/$1"^^ . + "false"^^ . + . + "SUPERFAMILY" . + . + . + "pain medicine" . + . + . + . + "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database."^^ . + . + . + . + . + "false"^^ . + "fibroblast" . + "http://iflastandards.info/ns/fr/frbr/frbrer/$1"^^ . + . + . + . + . + . + . + "Allotrope Merged Ontology Suite"^^ . + . + "rna_sstrand" . + . + . + "^\\d{8}$"^^ . + "obo" . + "Ontology for simulation, modelling, and optimization" . + . + "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g=$1"^^ . + "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis."^^ . + "chemical in the database supplied by Pesticide Action Network North America"^^ . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information."^^ . + . + . + . + . + . + . + . + "0000046"^^ . + . + "owlstar" . + "http://www.chemspider.com/Chemical-Structure.$1.html"^^ . + . + . + . + . + . + . + . + "https://www.yeastgenome.org/locus/"^^ . + . + . + . + . + . + . + . + . + . + . + . + "antibody" . + "biology" . + . + . + . + "ModelDB" . + . + "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies."^^ . + "^[A-Za-z_0-9]+$"^^ . + "life science" . + . + "bioinformatics" . + . + "Resources mentioned in \"Sharing biological data: why, when, and how\"" . + . + "human" . + . + "small molecule" . + . + . + "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$"^^ . + "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries."^^ . + "^[A-Z]+[0-9]+(\\.\\d+)?$"^^ . + "reaction" . + . + . + . + . + . + . + . + . + . + "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."^^ . + "protein" . + . + . + . + . + "Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts."^^ . + "KC-0979"^^ . + . + . + . + . + . + "cell types" . + "eukaryota" . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "An ontology of histopathological morphologies used by pathologists to classify/categorise animal lesions observed histologically during regulatory toxicology studies. The ontology was developed using real data from over 6000 regulatory toxicology studies donated by 13 companies spanning nine species."^^ . + . + . +_:N5f89f946900e4eebb0589865b407f817 "helpdesk@cropontology-curationtool.org" . + "CAS Registry Number" . + "metabolomics" . + "WikiPathways" . + . + . + "OpenCitations Corpus" . + . + . + . + "ontology" . + . + "false"^^ . + . + "envipath" . + . + . + . + "protein" . + . + . + "phs000768.v2.p1"^^ . + . + . + . + . + . + . + . + . + . + "http://sabiork.h-its.org/newSearch?q=ecnumber:"^^ . + . + . + . + "^[1-9]\\d{0,6}$"^^ . + . + "^[1-9]\\d*$"^^ . + . + . + . + "SR0000178"^^ . + . + . . - . - . - "The data cube vocabulary" . - . - "foodb" . - "^ML\\w+$"^^ . - . - . - "Glycosciences.DB" . - . - . - "entrez gene/locuslink" . - . - "National Xenopus Resource" . - "https://dbpedia.org/ontology/$1"^^ . - "gateway" . - . - . - "obo" . - . - "100101"^^ . - . - . - . - "https://knowledge.lonza.com/cell?id="^^ . - "Grant"^^ . - "zfa" . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/CEPH_"^^ . - "Os01g0883800"^^ . - "WBPhenotype" . - . - "SFB_COVID19_MW286762"^^ . - . - "GWAS Catalog" . - . - "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass="^^ . - . - "^EP\\d{4}$"^^ . - . - "https://pk-db.com/data/"^^ . - . - "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id="^^ . - . - . - . - "cellosaurus.resource" . - . - . - "Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in 363 animal species (other than human and mouse and rats and zebrafish, which have their own resources)."^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "obo" . - "https://www.ccdc.cam.ac.uk/services/structures?pid=ccdc:$1&sid=IDORG"^^ . - . - . - . - "C0026339"^^ . - "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."^^ . - "https://nanocommons.github.io/identifiers/registry#"^^ . - "https://pb.apf.edu.au/phenbank/strain.html?id="^^ . - "M1"^^ . - "bio.tools" . - "mirex" . - . - "semantic web" . - "^CHEMBL\\d+$"^^ . - . - . - . - "obo" . - . - . - "Bibliometric Data Ontology" . - "agilent.probe" . - . - "false"^^ . - . - "paolo.romano@hsanmartino.it" . - "Gene Ontology Rules" . - "^\\w+$"^^ . - "00000001"^^ . - . - "phylogenomics" . - . - . - "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)."^^ . - . - "nbn" . - "false"^^ . - "000410"^^ . - . - . - "ABC"^^ . - . - "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways."^^ . - . - "Paul Schofield" . - . - . - . + . + . + . + . + . + . + . + "obo" . + . + "ClinVar Record" . + . + . + . + . + . + "false"^^ . + "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code="^^ . + "SNOMEDCT_2020_03_01" . + . + . + "A set of guides on implementing various processes within hospitals or healthcare systems."^^ . + "National Academic Research and Collaborations Information System" . + . . - "slctr" . - . - . - "baoym@big.ac.cn" . - "false"^^ . - . - "false"^^ . - "^rxn\\d+$"^^ . - . - "http://purl.obolibrary.org/obo/COLAO_$1"^^ . - "http://www.phosphosite.org/proteinAction.do?id="^^ . - "covoc" . - . - . - . - . - . - . - . - . - "A subspace of Metabolic Atlas for compartment-specific records for metabolites."^^ . - "CHEBI" . - . - . - "0001056"^^ . - . - . - . - . - . - . - . - . - . -_:N990a89615e4241f58815382f39a098e3 "CTCAE Help" . - . - . - "http://terminology.hl7.org/CodeSystem/v2-"^^ . - . - "biomedical science" . - "cthoyt@gmail.com" . - . - . - . - "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id="^^ . - "K00973"^^ . - . - . - . - "life science" . - . - . - . - "Antibiotic Resistance Ontology" . - . - . - . - . - . - . - . - "minid.test" . - . - . - "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource."^^ . - "do" . - . - "knowledge and information systems" . - . - . - "Database of Complete Genome Homologous Genes Families" . - "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information."^^ . - "ontology" . - . - . - . - "gorel" . - . - . - . - . - . - "drug discovery" . - . - "http://purl.obolibrary.org/obo/DDPHENO_$1"^^ . - . - . - . + . + "RPCEC00000423"^^ . + . + . + . + "International Classification of Diseases, 10th Revision" . + . + . + . + "phenotype" . + "lgic" . + . + . + . + "obo" . + "obo" . + "citlalli.mejiaalmonte@gmail.com" . + . + . + . + . + "http://purl.obolibrary.org/obo/ZEA_"^^ . + . + . + "comparative genomics" . + . + "gene expression" . + "https://loinc.org/"^^ . + . + . + . + . + . + . + . + . + "https://www.scopus.com/affil/profile.uri?afid=$1"^^ . + "https://lincs.hms.harvard.edu/db/proteins/"^^ . + "false"^^ . + . + . + "http://ddinter.scbdd.com/ddinter/interact/"^^ . + "CIViC Evidence" . + . + . + . + . + . + "http://rdfs.org/ns/void#"^^ . + "https://bioregistry.io/hssp:"^^ . + "life science" . + . + . + . + . + . + "^R\\d+$"^^ . + "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/BSPO_$1"^^ . + . + "1868"^^ . + . + . + . + . + . + "Common Science and Technology Resources" . + . + . + . + "ontology" . + "metlin" . + "0000015"^^ . + . + "molecular biology" . + . + "culture" . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene."^^ . + "WBbt" . + . + . + "protein" . + "glycomics" . + "http://purl.obolibrary.org/obo/MP_$1"^^ . + "scopus.affiliation" . + . + . + . + "Federica Quaglia" . + "http://www.gramene.org/db/genes/search_gene?acc="^^ . + . + . + "life science" . + "contributor"^^ . + "http://purl.obolibrary.org/obo/EHDAA2_$1"^^ . + . + . + "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$"^^ . + "false"^^ . + . + "https://www.merckmillipore.com/catalogue/item/$1"^^ . + . + . + . + . + . + "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys."^^ . + . + "false"^^ . + . + . + . + . + . + . + "lectins/172"^^ . + . + . + . + "hoip" . + "Kidney and Urinary Pathway Ontology" . + "pharmgkb.disease" . + . + . + . + . + . + . + "life science" . . - "has responsible" . - . - . - "troy_pells@yahoo.ca" . - . + "http://sabiork.h-its.org/reacdetails.jsp?reactid=$1"^^ . + . + . + . + . + "Jesper Friis" . + . + . + . + "NCI2004_11_17" . + . + . + "http://thebiogrid.org/"^^ . +_:N8085bf80823543a98709bfd02a116783 "Crop Ontology Helpdesk" . + "false"^^ . + . + "obo" . + . + . + . + . + . + . + . + . + . + . + . + . + "Human Reference Atlas Common Coordinate Framework Ontology" . + . + "http://purl.bioontology.org/ontology/npo#NPO_$1"^^ . + . + "G-Rich Sequences Database" . + . + "bioinformatics" . + "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid="^^ . + "^\\d{7}$"^^ . + "^\\d{7}$"^^ . + . + . + . + . + . + "obo" . + . + . + . + "selventa" . + . + . + "embryonic stem cell" . + . + . + . + . + . + . + "10015919"^^ . + . + . + . + "^MMAR\\_\\d+$"^^ . + "https://www.datascienceontology.org/concept/"^^ . + . + "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples."^^ . + "Jianjiong Gao" . + "http://arabidopsis.org/servlets/TairObject?accession=AASequence:$1"^^ . + . + . + "false"^^ . + "Vir-Mir db" . + . + . + "https://pubchem.ncbi.nlm.nih.gov/compound/"^^ . + "pactr" . + . + . + . + "ccrid" . + "This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology."^^ . + . + . + . + "Amphibian Taxonomy Ontology is an ontology of Amphibian species and genres. It is being integrated into UBERON resource"^^ . + . + "MOSAiC Ontology" . + . + "protein" . + . + "epidemiology" . + . + . + . + . + "^FCB\\d{3}$"^^ . + . + . + . + "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID="^^ . + . + . + . + "Experimental Factor Ontology" . + . + "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=$1"^^ . + . + "http://biomodels.net/rdf/vocabulary.rdf#"^^ . + "medicine" . + . + . + . + . + . + . + "M0001"^^ . + . + . + "rna" . + "http://uri.neuinfo.org/nif/nifstd/nlx_mol_"^^ . + "primary health care" . + . + "Information about the C57BL/6J. Includes genetic background and disease data."^^ . + "bgee@sib.swiss" . + . + "uniprot.journal" . + . + . + . + . + . + "ricenetdb.reaction" . + . + . + "spike00001"^^ . + . + . + "phylogenetics" . + . + "Cell Ontology" . + "http://www.case.edu/EpilepsyOntology.owl#"^^ . + "viroligo" . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + "The Canadian Drug Product Database (DPD) contains product specific information on drugs approved for use in Canada, and includes human pharmaceutical and biological drugs, veterinary drugs and disinfectant products. This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN)."^^ . + "MycoBrowser leprae" . + . + . + . + "Unified Medical Language System Atomic Unique Identifier" . + "glycomics" . + . + "Dr. Alpha Tom Kodamullil" . + "false"^^ . + . + "ensemblglossary" . + . + "4892"^^ . + "sequence" . + . + "proco" . + . + "^EDI_\\d+$"^^ . + . + . + "https://purl.dataone.org/odo/MOSAIC_$1"^^ . + . + "Cell Version Control Repository" . + "oboinowl" . + "Hannele Laivuori" . + . + "ontology" . + . + "cldb" . + . + . + . + . + . + . + "http://www.ifomis.org/bfo/1.1/snap#"^^ . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "^\\d{7}$"^^ . + "co_366" . + "chromium"^^ . + . + "0000049"^^ . + . + . + . + "http://purl.obolibrary.org/obo/VSMO_"^^ . + . + . + . + "^[0-9]*$"^^ . + . + "Milton H. Saier, Jr." . + "false"^^ . + "obo" . + . + "life science" . + "https://www.genecards.org/cgi-bin/carddisp.pl?gene="^^ . + "Rat Genome Database" . + "Yaroslav Halchenko" . + "Vertebrate Taxonomy Ontology" . + . + "preprints" . + . + "geography" . + . + "https://tetrahymena.vet.cornell.edu/display.php?stockid=$1"^^ . + . + "http://www.hmdb.ca/metabolites/$1"^^ . + "MESHPP" . + . + . + "genome" . + . + . + . + "false"^^ . + "false"^^ . + "plana" . + . + "The Mental Disease Ontology is developed to facilitate representation for all aspects of mental disease. It is an extension of the Ontology for General Medical Science (OGMS) and Mental Functioning Ontology (MF)."^^ . + . + . + . + . + . + . + . + . + "https://www.ebi.ac.uk/ols4/ontologies/cco/terms?obo_id=CCO:$1"^^ . + . + . + . + . + "pathway" . + . + "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology."^^ . + "NIAID ChemDB ID" . + "0000512"^^ . + "life science" . + . + "life science" . + "https://bioregistry.io/pscdb:"^^ . + . + . + . + "https://nanbyodata.jp/disease/NANDO:$1"^^ . + . + . + "false"^^ . + "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc."^^ . + "false"^^ . + "false"^^ . + . + . + . + "https://cadsrapi.nci.nih.gov/cadsrapi4/GetXML?query=DataElement[@publicId=$1]"^^ . + . + . + "http://purl.obolibrary.org/obo/ExO_"^^ . + "Barley ontology" . + . + . + . + . + . + . + "Health Canada Clinical Trials Database" . + "life science" . + . . - . - . - . - . - . - . - . - . - . - . - "ontology" . - . - "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies"^^ . - . - "life sciences" . - "http://purl.obolibrary.org/obo/OMO_"^^ . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_res_$1"^^ . - . - . - . - . - "bdgp.insertion" . - . - . - "chemistry" . - "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes."^^ . - . - "Philippe Le Mercier" . - "This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI)."^^ . - . - "Web Annotation Ontology" . - . - "spp" . - . - "epigenomics" . - . - . - . - . + "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG"^^ . + "HIT000195363"^^ . + . + "http://purl.obolibrary.org/obo/AAO_$1"^^ . + . + . + "SpBase" . + . + . + "MycoBrowser marinum" . + "SUBSET_SIREN" . + . + . + . + . + "^SD\\d+$"^^ . + . + "anatomy" . + . + "HOGENOM is a database of homologous genes from fully sequenced organisms (bacteria, archeae and eukarya). This collection references phylogenetic trees which can be retrieved using either UniProt accession numbers, or HOGENOM tree family identifier."^^ . + . + . + "1"^^ . + . + . + "false"^^ . + . + . + . + . + "http://www.ncbi.nlm.nih.gov/clinvar?term="^^ . + . + "subject agnostic" . + . + . + "Echinobase supports the international research community by providing a centralized, integrated and easy to use web based resource to access the diverse and rich, functional genomics data of echinoderm species."^^ . + . + . + . + "Insect Cell Line Database" . + . + . + "https://schema.org/"^^ . + "Ambystoma Genetic Stock Center" . + . + . + . + "^\\d{7}$"^^ . + "PathBank" . + . + "clinical studies" . + . + "obo" . + "268"^^ . + "structure" . + . + . + "https://modeldb.science/"^^ . + . + . + "ecogene" . + "Matthew Brush" . + . + . + . + . + "sio" . + . + . + "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"^^ . + . + "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules."^^ . + "https://neurovault.org/images/"^^ . + . + "false"^^ . + . + . + . + . + . + . + "life science" . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/FBbi_"^^ . + "corrdb" . +_:N7daf0920305247a2a9db552f15496084 "Vivian Lee" . + . + . + . + . + . + "medicine" . + "An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process."^^ . + "https://proteininformationresource.org/cgi-bin/resid?id=$1"^^ . + . + . + . + . + "http://www.molbase.com/en/index.php?app=search&search_keyword="^^ . + . + . + . + . . - "^\\d+$"^^ . - . - . - "Gerhard Mayer" . - . - . - . - "Tudor Oprea" . - "interaction" . - . - "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."^^ . - . - "jcm" . - . - . - . - "ucsc" . - . - . - . - . - . - . - "hinv.locus" . - "lonza" . - . - "zebrafish line" . - . - "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."^^ . - "biology" . - . - . - . - . - . - . - . - . - . - . - . - "https://fungi.ensembl.org/id/"^^ . - "The database details a comprehensive IUBMB approved classification system for membrane transport proteins known as the Transporter Classification (TC) system. The TC system is analogous to the Enzyme Commission (EC) system for classification of enzymes, but incorporates phylogenetic information additionally."^^ . - . - "variant" . - . - . - . - "ArrayMap" . - . - . - . - "The Cell Cycle DB" . - . - "seo" . - "gene" . - . - . - "http://purl.obolibrary.org/obo/MIRNAO_$1"^^ . - "mro" . - "ML0224"^^ . - . - . - . - "pharmgkb.drug" . - . - . - . - . - . - "SECONDARY_CAS_RN" . - "false"^^ . - . - "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1"^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - "https://bioregistry.io/abcam:"^^ . - . - . - . - . - "protein" . - "world2dpage" . - "TTD Drug" . - . - "https://bioregistry.io/imgt.primerdb:"^^ . - . - . - . - . - . - . - "computational biology" . - "false"^^ . - "ZINC is not Commercial" . - . - "A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. The serialisation, compression, or encoding of concrete data formats/models is not in scope of EDAM. Format 'is format of' Data."^^ . - "pirsf" . - . - . - . - . - "Stress Knowledge Map" . - . - "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/$1"^^ . - "drsc" . - . - "http://edamontology.org/data_$1"^^ . - "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$"^^ . - . - . - "http://www.kegg.jp/entry/$1"^^ . - "annethessen@gmail.com" . - . - . - . - . - . - "bgee.stage" . - . - "alfred" . - "loinc" . - . - "ontology" . - "http://purl.obolibrary.org/obo/VBO_"^^ . - . - . - . - . - . - . - "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm"^^ . - . - . - "protein" . - . - "http://purl.obolibrary.org/obo/HTN_"^^ . - . - . - . - . - . - . - "agb@ebi.ac.uk" . - . - "https://rnaloops.cs.put.poznan.pl/search/details/$1"^^ . - . - "true"^^ . - . - "https://cellmodelpassports.sanger.ac.uk/passports/"^^ . - . - "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id="^^ . - "uniprot.kw" . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/COVOC_$1"^^ . - . - . - . - . - "00023232"^^ . - . - "false"^^ . - "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip"^^ . - "occ" . - "subject agnostic" . - "Zhiliang Hu" . - . - . - . - . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - "http://string.embl.de/interactions/$1"^^ . - . - "https://athena.ohdsi.org/search-terms/terms/"^^ . - "false"^^ . - . - . - . - "^\\d{8}$"^^ . - . - "stefanie.seltmann@ibmt.fraunhofer.de" . - "https://aopwiki.org/stressors/"^^ . - . - . - "protein" . - "^E\\d+$"^^ . - . - . - . - "model" . - . - . - . - "false"^^ . - "identifier for an academic research group issued by the CNRS"^^ . - . - . - "chemistry" . - . - . - . - . - "https://grch38.togovar.org/variant/"^^ . - "Database of Quantitative Cellular Signaling: Model" . - "Gs0000008"^^ . - . - . - "life science" . - . - . - . - "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."^^ . - . - . - . - . - . - . - . - "Information Artifact Ontology" . - . - . - . - . - . - "biodiversity" . - . - . - . - . - . - . - . - . - "false"^^ . - "https://www.uniprot.org/locations/"^^ . - "Ontology for Nutritional Epidemiology" . - "rnavdb" . - . - . - "biomedical science" . - . - "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]"^^ . - "http://www.crop2ml.org/cropmdb/$1"^^ . - . - "The health Surveillance Ontology (HSO) focuses on \"surveillance system level data\", that is, data outputs from surveillance activities, such as number of samples collected, cases observed, etc. It aims to support One-Health surveillance, covering animal health, public health and food safety surveillance."^^ . - "0110974"^^ . - . - "131"^^ . - . - "model" . - "Human Plasma Membrane Receptome Families" . - "false"^^ . - "^[a-z][a-zA-Z]+$"^^ . - "paleodb" . - . - "David Mendez Lopez" . - . - . - "kupo" . - "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide"^^ . - . - "^PASS\\d{5}$"^^ . - "TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them."^^ . - "small molecule" . - . - "^\\d+$"^^ . - . - "transcriptomics" . - . - "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."^^ . - . - "0001885"^^ . - . - . - . - . - . - . - "baseDimensionEnumeration"^^ . - . - . - . - . - . - . - . - "credit" . - "c0001"^^ . - . - "19210-3"^^ . - . - "bioschema" . - "echobase" . - . - . - . - "https://transyt.bio.di.uminho.pt/reactions/"^^ . - "gene" . - "identifier for a scientific journal, in the UniProt database"^^ . - "botany" . - "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)"^^ . - . - "genomic" . - "false"^^ . - "facebase" . - "Open Data Commons for Spinal Cord Injury" . - . - . - "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$"^^ . - . - "^[0-9][A-Za-z0-9]{3}$"^^ . - "^\\d{7}$"^^ . - "CAPS-DB is a structural classification of helix-cappings or caps compiled from protein structures. The regions of the polypeptide chain immediately preceding or following an alpha-helix are known as Nt- and Ct cappings, respectively. Caps extracted from protein structures have been structurally classified based on geometry and conformation and organized in a tree-like hierarchical classification where the different levels correspond to different properties of the caps."^^ . - . - "LigandBox" . - . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1"^^ . - "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation."^^ . - "phylogeny" . - . - "37232"^^ . - . - . - . - "pharmgkb.gene" . - . - . - . - . - . - . - . - . - . - "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1"^^ . - "anatomy" . - "sider.effect" . - "nje5@georgetown.edu" . - "biolink" . - . - . - . - "Cu.me.I1"^^ . - . - . - "careerPrizeMoney"^^ . - . - . - "hpiwowar@gmail.com" . - . - . - "https://biopragmatics.github.io/providers/pba/"^^ . - . - . - . - . - . - . - "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions."^^ . - . - . - . - . - . - . - . + . + . + . + . + . + "deficiency" . + . + "Jörg Overmann" . + "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"^^ . + . + . + "protein" . + . + "Guy Cochrane" . + . + . + "Variants in dbVar."^^ . + "http://purl.obolibrary.org/obo/CARO_"^^ . + . + . + "http://purl.obolibrary.org/obo/TADS_$1"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "AspGD Protein" . + . + "protein" . + "false"^^ . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "Psychology Ontology" . + . + . + "subject agnostic" . + . + . + "627"^^ . + "http://data.europa.eu/89h/$1"^^ . + . + "umbbd.rule" . + . + . + . + "http://purl.obolibrary.org/obo/NCIT_"^^ . + "neurophysiology" . + . + . + . + . + . + "The Cell Line Data Base (CLDB) is a reference information source for human and animal cell lines. It provides the characteristics of the cell lines and their availability through distributors, allowing cell line requests to be made from collections and laboratories."^^ . + . + . + . + "domain" . + . + "false"^^ . + . + . + . + . + . + "SBML RDF Vocabulary" . + . + . + . + "pass2" . + . + . + . + "ontology" . + "reagents" . + . + "http://emmo.info/emmo#EMMO_$1"^^ . + "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." . + . + . + "interaction" . + . + . + "http://qudt.org/schema/qudt#"^^ . + . + . + "http://tables.pseudogene.org/[?species_name]/$1"^^ . + . + . + . + . + "bioinformatics" . + "The Sri Lanka Clinical Trials Registry (SLCTR) is a Registry for clinical trials involving human subjects, conducted in Sri Lanka or overseas. The SLCTR is a Primary Registry linked to the Registry Network of the International Clinical Trials Registry Platform of the WHO (WHO-ICTRP). It is a not-for-profit Registry, with free and open access to researchers, clinicians, and the general public. (from homepage)"^^ . + "false"^^ . + "0000001"^^ . + . + . + . + . + "https://medical-data-models.org/forms/"^^ . + . + . + . + . + . + . + . + . + "The Ontology of Organizational Structures of Trauma centers and Trauma systems (OOSTT) is a representation of the components of trauma centers and trauma systems coded in Web Ontology Language (OWL2)."^^ . + . + . + "LNC" . + . + "agriculture" . + . + "false"^^ . + . + . + . "biomedical science" . - . - . - . - "EC number" . + . + . + . + . + "^\\d{6}$"^^ . + "0007807"^^ . + "false"^^ . + . + . + "https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact"^^ . + . + . + "https://cropontology.org/rdf/CO_358:$1"^^ . + . + . + . + "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid="^^ . + "tarbase" . + . + . + "HEPRO is an ontology of informational entities and processes related to health procedures and health activities."^^ . + . + . + "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). Timing details will be added to the abstract version of the ontology in a future release."^^ . + . + . + "ngbo" . + "HomologyRelation"^^ . + . + "Intelligence Task Ontology" . + "Signaling Network Open Resource" . + . + . + "This is a dot notation used to concisely describe a SCOP(e) class, fold, superfamily, and family. For example, a.39.1.1 references the 'Calbindin D9K' family, where 'a' represents the class, '39' represents the fold, '1' represents the superfamily, and the last '1' represents the family."^^ . + . + "HPSI0114i-bezi_1"^^ . + "cryopreservation" . + "http://www.nematodes.org/nembase4/cluster.php?cluster=$1"^^ . + . + "^\\d+$"^^ . + . + "genome" . + . + "Brain Architecture Knowledge Management System Neuroanatomical Ontology" . + . + "https://fcs-free.org/fcs-database?"^^ . + . + . + "CRISP Thesaurus" . + "http://www.ebi.ac.uk/cmpo/CMPO_"^^ . + "Maciej Antczak" . + . + . + . + "false"^^ . + "rnavdb" . + "developmental biology" . + . + . + "proteins" . + . + . + "radlex" . + "The Digital Object Identifier System is for identifying content objects in the digital environment."^^ . + . + . + "Metabolites in drugbank"^^ . + . + . + . + "genetics" . + . + "NCBI Protein" . + . . - . - "PIR Superfamily Classification System" . - "ICD-11" . - . - . - . - . - "life science" . - . - "model organism database" . - "E00002"^^ . - "taxonomy" . - "http://agroportal.lirmm.fr/ontologies/$1" . - . - . - . - . - . - . - . - . - "International Classifications of Diseases" . - . - . - . - . - . - . - . - . - . - . - "life science" . - . - . - "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)."^^ . - . - . - "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds."^^ . - "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group."^^ . - "https://github.com/"^^ . - . - "life science" . - . - "http://purl.obolibrary.org/obo/TO_"^^ . - "http://purl.obolibrary.org/obo/SCDO_$1"^^ . - . - . - "organic chemistry" . - . - "msaier@ucsd.edu" . - . - . - . - . - . - . - . - "achcar11"^^ . - "cstr" . - . - "true"^^ . - . - . - . - "cmpo" . - . - "false"^^ . - . - "massbank" . - "http://purl.obolibrary.org/obo/CDNO_$1"^^ . - "obo" . - . - . - "^\\d+-\\d+$"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - "ontology" . - . - . - . - . - . - "http://www.weizmann.ac.il/molgen/loqate/gene/view/$1"^^ . - . - "gexo" . - . - . - "Pathguide" . - "genome" . - . - . - "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme."^^ . - . - . - . - "FBtr0084214"^^ . + "false"^^ . + . + "Plant Ontology" . + . + . + . + . + . + "https://vcell.org/biomodel-"^^ . + "false"^^ . + "^\\d{7}$"^^ . + . + . + "NCBI Data Repository Service" . + . + . + "https://www.emsl.pnnl.gov/project/$1"^^ . + "gmd.ref" . + "animal husbandry" . + . + . + . + . + . + . + "Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle"^^ . + "false"^^ . + "03212fd7_abfd_4828_9c8e_62c293052d4b"^^ . + . + . + . + "The SciCrunch Registry holds metadata records that describe digital resources, e.g., software, databases, projects and also services. Most of these are produced as a result of government funding and are available to the scientific community. Resources are manually curated to make sure the information is accurate. We also use a web crawler to find literature mentions for the resources."^^ . + "^TS-\\d{4}$"^^ . + "^\\d+$"^^ . + "genecards.genenote" . + . + "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1"^^ . + . + . + . + . + "bioinformatics" . + . + "CHEBI" . + . + . + . + . + "ecology" . + . + "^\\d+$"^^ . + "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id="^^ . + . + "https://cropontology.org/rdf/CO_366:"^^ . + "ordo" . + "http://www.jcvi.org/mpidb/experiment.php?interaction_id="^^ . + . + . + "mutation" . + . + "http://ecoportal.lifewatch.eu" . + . + "4DNSR73BT2A2"^^ . + . + . + . + "The Rat Genome Database RatMap is focused on presenting rat genes, DNA-markers, QTL:s etc that is localized to chromosome. The database is dedicated to rat gene nomenclature and should be consulted for queries in such matters"^^ . + . + . + . + . + . + "life science" . + "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" . + . + "biomodels.vocabulary" . + "false"^^ . + . + "Gene Wiki" . + . + . + "Tree of Life Web Project" . + . + . + . + . + "BAC045"^^ . + "plant" . + . + "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis."^^ . + . + . + . + . + "nif.grossanatomy" . + . + . + "068078"^^ . + . + "http://www.kegg.jp/entry/"^^ . + "false"^^ . + "MetaCyc Reaction" . + "false"^^ . + . + "Sheng-Da Hsu" . + . + "^PR\\d{5}$"^^ . + "The National Bibliography Number (NBN), is a URN-based publication identifier system employed by a variety of national libraries such as those of Germany, the Netherlands and Switzerland. They are used to identify documents archived in national libraries, in their native format or language, and are typically used for documents which do not have a publisher-assigned identifier."^^ . + "false"^^ . + . + . + . + "Linked-data framework for connecting species in chemical kinetic reaction mechanisms with quantum calculations. A mechanism can be constructed from thermodynamic, reaction rate, and transport data that has been obtained either experimentally, computationally, or by a combination of both. In order to implement this approach, two existing ontologies, namely OntoKin, for representing chemical kinetic reaction mechanisms, and OntoCompChem, for representing quantum chemistry calculations, are extended. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . + . + . + . + "^\\d{7}$"^^ . + "http://repository.topdownproteomics.org/proteoforms/$1"^^ . + . + "http://purl.obolibrary.org/obo/PECO_$1"^^ . + . + "obo" . + . + "TP53"^^ . + . + . + . + . + "false"^^ . + "https://bioregistry.io/rebase:"^^ . + "genomic" . + "ascl" . + . + "ontology" . + "systems biology" . + . + "https://rnacentral.org/rna/"^^ . + "The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Variant, which means any (non-artificial) variant that occurs in humans."^^ . + "false"^^ . + "Antibiotic Resistance Ontology" . + "hogenom" . + . + . + . + . + . + . + . + . + "evan@epatters.org" . + "LIPID_MAPS_class" . + "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id=$1"^^ . + "Gender, Sex, and Sexual Orientation Ontology" . + . + . + . + . + "http://www.genome.jp/dbget-bin/www_bget?cpd:"^^ . + "biosimulations" . + . + . + "^C\\d+$"^^ . + "molecules" . + . + . + . + . + . + "https://www.ebi.ac.uk/metagenomics/samples/"^^ . + . + "https://rfam.xfam.org/family/"^^ . + "^\\d+$"^^ . + . + "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN="^^ . + "ontology" . + . + . + . + . + . + . + . + . + "JRC Data Catalogue" . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/PORO_$1"^^ . + . + . + . + . + "sigmaaldrich" . + . + . + . + . + "Open Data Commons for Traumatic Brain Injury" . + . + . + . + . + . + "false"^^ . + . + "http://bigg.ucsd.edu/compartments/"^^ . + . + . + . + . + . + . + . + "Ontology Lookup Service" . + "Ramona Walls" . + . + . + "Jackson Laboratories Strain" . + "983"^^ . + "farming systems research" . + "MNXM1723"^^ . + "swissregulon" . + "mint" . + "false"^^ . + "genomics" . + . + "Dataset"^^ . + "pathway" . + . + . + "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are “Simple” Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC."^^ . +_:Ncc707838a44a4b9caf3c1e9d821712ea "Crop Ontology Helpdesk" . + "^\\d{7}$"^^ . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1"^^ . + . +_:N330735ffe9774476b795effe4f9d071f "Allotrope Foundation" . + "ORPHA" . + "iev" . + "MM00040"^^ . + "cell biology" . + "http://purl.obolibrary.org/obo/ZECO_$1"^^ . + . + "Alzforum_mut" . + . + . + . + . + . + "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."^^ . + . + . + . + . + . + "SWRL enables Horn-like rules to be combined with an OWL knowledge base."^^ . + . + "CPX-263"^^ . . - . - . - . - . - "0004486"^^ . - . - . - . -_:N50a2361590df4817930385e1bb2bde35 "Jonathan Bard" . - . + . + "http://www.kegg.jp/entry/"^^ . + "^[\\w\\-.]{3,}$"^^ . + "obo" . + "neurobiology" . + "orchard@ebi.ac.uk" . + . + "kegg.genome" . + . + "9001411"^^ . + . + "EST database maintained at the NCBI." . + . + "MeSH 2013" . + . + . + . + . + "metabolomics" . + . + "Adverse Event Reporting Ontology" . + "Human Ancestry Ontology" . + "go" . + . + . + "spdx" . + . + . + . + . + . + "https://www.storedb.org/store_v3/study.jsp?studyId="^^ . + "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task="^^ . + "false"^^ . + "http://purl.obolibrary.org/obo/EMAP_"^^ . + "knowledge and information systems" . + . + . + . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information."^^ . + . + . + . + "Data Object Service" . + "JCRB1355"^^ . + . + . + "HMDB" . + . + . + "life science" . + "0004828"^^ . + "0000618"^^ . + . + . + "https://www.picb.ac.cn/limore/cellLines/single?para=$1"^^ . + "identifier for a scientific journal, in the UniProt database"^^ . + "MassBank" . + . + . + . + . + "Illumina Probe Identifier" . + "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html"^^ . + "https://mmp.sfb.uit.no/databases/marcat/#/records/$1"^^ . + . + "http://www.candidagenome.org/cgi-bin/locus.pl?dbid=$1"^^ . + . + . . - . - "false"^^ . - "http://purl.obolibrary.org/obo/ExO_$1"^^ . - . - . - "ecology" . - . - . - . - . - . - . - . - . - . - "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis."^^ . - . - . - _:N60d1d3e7c3a04448a8f402e49be1dc65 . - . - . - . - "Animal Trait Ontology for Livestock" . - "taxonomy" . - . - . - . - "odrl" . - "^\\d+$"^^ . - . - "ecology" . - . - "0000101"^^ . - "http://purl.obolibrary.org/obo/HP_$1"^^ . - "medicine" . - . - . - "false"^^ . - . - "Ontology for Chemical Kinetic Reaction Mechanisms" . - "190000021540"^^ . - . - . - "^\\d{6}$"^^ . -_:Nbb9e881fa6a1437d9071cb8f83b46898 "loinc@regenstrief.org" . - . - . - . - "data visualization" . - . - "19-T4"^^ . - . - "false"^^ . - . - "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"^^ . - . - . - . - "depends on" . - . - . - "lei" . - "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. "^^ . - . - . - "Platynereis Developmental Stages" . - . - . - . - "https://cropontology.org/rdf/CO_347:"^^ . - . - . - . - . - . - . - . - "ontology" . - . - . - "^XB\\-\\w+\\-\\d+$"^^ . - . - "earth science" . - "http://purl.obolibrary.org/obo/STATO_"^^ . + "mmp.fun" . + "The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes."^^ . + . + "false"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/ZP_"^^ . + "http://purl.obolibrary.org/obo/CTENO_"^^ . + . + "^\\d{6,8}$"^^ . + "Unified Medical Language System Concept Unique Identifier" . + "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1"^^ . + "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1"^^ . + "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif."^^ . + "https://biomodels.net/vocab/idot.rdf#$1"^^ . + "http://purl.obolibrary.org/obo/INO_"^^ . + . + "structural biology" . + . + . + . + . + "^UP\\d{9}$"^^ . + . + "DRSC05221"^^ . + "medicine" . + . + . + "false"^^ . + . + "An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment."^^ . + "Causal_Graphical_Model"^^ . + . + "3639"^^ . + "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references cluster information."^^ . + . + "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . . - . - . - . - . - . - "obo" . - . -_:N8b7c2badcabc42edbc9571418c5a1d77 "Crop Ontology Helpdesk" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "rs11603840"^^ . - "classification" . - . - . - . - . - . - . - . - . - . - . - "https://cropontology.org/rdf/CO_370:$1"^^ . - "ZEA_0015177"^^ . - "Paolo Romano" . - "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images."^^ . - . - . - . - . - "http://www.w3.org/ns/prov#$1"^^ . - . - "Compositional Dietary Nutrition Ontology" . - . - . - "false"^^ . - "NCI_Thesaurus" . - "DateTimeDescription"^^ . - . - "false"^^ . - "life science" . - . - . - . - "propreo" . - . - "ontology" . - "false"^^ . - "false"^^ . - . - "gramene.qtl" . - "earth science" . - "https://www.gwascentral.org/study/$1"^^ . - . - "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)."^^ . - "computational biology" . - . - . - . - "obo" . - . - . - . - "inchi" . - . - . - . - . - . - . - . - . - "https://entomology.ca.uky.edu/content/"^^ . - . - "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs."^^ . - "https://lincs.hms.harvard.edu/db/datasets/"^^ . - "false"^^ . - "sov:WRfXPg8dantKVubE3HX8pw"^^ . - "false"^^ . - . - . - . - . - . - . - . - "^IPR\\d{6}$"^^ . - "^\\d+$"^^ . - "000000012281955X"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "dna" . - "ontology" . - . - . - . - . - . - . - "neurobiology" . - . - . - "https://www.discoverx.com/searchproduct?searchtext=$1&searchmode=exact"^^ . - . - . - "Vitis ontology" . - . - . - "false"^^ . - "false"^^ . - . - . - "gnome" . - . - . - . - . - "http://www.obofoundry.org/" . - . - "ncro" . - "protein" . - "https://www.ebi.ac.uk/biostudies/studies/"^^ . - . - . - . - . - . - . - "https://www.merckmillipore.com/catalogue/item/$1"^^ . - . - . - . - _:N99cf0000a4e74a949363596ae1f73f20 . - "epidemiology" . - . - . - . - . -_:Nbc75e354242843bbb93bfd83febcc1f4 "helpdesk@cropontology-curationtool.org" . - . - "rna" . - "http://data.europa.eu/89h/"^^ . - . - "^[a-z0-9\\_]+$"^^ . - "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1"^^ . - . - . - "SPAR Ontologies" . - . - . - "false"^^ . - . - . - . - . + . + "http://purl.obolibrary.org/obo/AERO_$1"^^ . + . + "gmd.analyte" . + "LipidBank" . + . + "pictar-vert" . + . + . + . + . + . + . + . + . + . + . + "Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space."^^ . + "false"^^ . + "false"^^ . + . + . + . + . + . + . + "STOREDB database is a repository for data used by the international radiobiology community, archiving and sharing primary data outputs from research on low dose radiation. It also provides a directory of bioresources and databases for radiobiology projects containing information and materials that investigators are willing to share. STORE supports the creation of a low dose radiation research commons."^^ . + "life science" . + . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions."^^ . + . + "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community."^^ . + "^\\d+$"^^ . + . + "false"^^ . + "biology" . + . + "^\\d{6,7}$"^^ . +_:N65fbd436827845f5847a7d3a01a8aa66 "faldo@googlegroups.com" . + "genome" . + . + . + "http://www-snorna.biotoul.fr/plus.php?id=$1"^^ . + . + . + . + . + . + "^000\\d{5}$"^^ . + "false"^^ . + . + . + "OTTHUMG00000169812"^^ . + . + . + "false"^^ . + "030719"^^ . + "HPA000698"^^ . + . + "proteomics" . + . + . + . + . + . + . + . + "Paul Schofield" . + "hannele.laivuori@helsinki.fi" . + . + . + "An ontology supporting data modeling in WikiPathways"^^ . + "^\\d+$"^^ . + . + . + "false"^^ . + . + . + "https://www.ebi.ac.uk/ols4/ontologies/$1" . + . + . + . + "true"^^ . + . + . + "Vocabulary used in the RDF representation of SBML models."^^ . + "^RCV\\d+(\\.\\d+)?$"^^ . + . + "false"^^ . + . + "dictybase" . + "^\\d{4}$"^^ . + . + . + "false"^^ . + . + "chemistry" . + "Swiss Personalized Health Network Schema" . + "structure" . + . + . + "false"^^ . + . + . + . + "rna" . + "chemistry" . + . + . + "fr" . + . + "https://europepmc.org/article/CTX/$1"^^ . + . + . + "https://www.ebi.ac.uk/chembl/entity/"^^ . + . + "emsl.project" . + . + "CALIPHO Group Ontology of Human Anatomy" . + . + . + "https://www.inaturalist.org/places/$1"^^ . + . + "https://doi.org/"^^ . + . + . + . + "ISCW007415"^^ . + "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."^^ . + . + . + "adult" . + . + . + . + . + "health science" . + . + "^PKDB[0-9]{5}$"^^ . + . + . + "http://purl.obolibrary.org/obo/DDANAT_"^^ . + . + "ontology" . + "drugs" . + "http://www.cathdb.info/cathnode/$1"^^ . + . + "oncology" . + . + "1047874"^^ . + . + . + "agriculture" . + "neuroscience" . + . + . + "TF101014"^^ . + . + . + . + . + "CHEMONTID" . + "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\"."^^ . + . + . + . + . + "biomedical science" . + . + "functional genomics" . + . + . + "TAX" . + . + . + "Database of Aligned Ribosomal Complexes" . + . + . + . + . + "https://www.xenbase.org/entry/$1"^^ . + . + . + "European Medicines Evaluation Agency" . + "obo" . + . + . + . + . + . + . + . + . + . + "false"^^ . + "The data presented here is a result of systematically tracking the localization and abundance of 5330 yeast proteins at single-cell resolution under three different stress conditions (DTT, H2O2 and nitrogen starvation) using the GFP-tagged yeast library"^^ . + "stn" . + . + "germline" . + "BUNA790102"^^ . + "81944ba1-81d0-436e-8552-33d77a27834b"^^ . + . + . + "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature."^^ . + . + "https://www.ncbi.nlm.nih.gov/pubmed/"^^ . + "P10636"^^ . + "Wikidata Property" . + "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER."^^ . + . + . + . + "esldb" . + "gene" . + . + "ontology" . + . + . + . + . + . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_"^^ . + . + . + "GALEN" . + . + . + . + . + . + . + "pathway" . + . + . + "cell_model_passport" . + "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1="^^ . + . + . + . + . + . +_:Neabecefb91604f08872b21ea41a4ec75 "J.Bard@ed.ac.uk" . + "grid.225360.0"^^ . + "CE28239"^^ . + . + . + "^\\d{7}$"^^ . + "geodesy" . + . + "brendanx@uw.edu" . + "0000564"^^ . + . + . + . + "ENCSR163RYW"^^ . + . + "bioinformatics" . + . + "https://bioregistry.io/cmecs:"^^ . + . + . + "false"^^ . + "BioLegend" . + . + . + . + "http://purl.obolibrary.org/obo/DC_CL_$1"^^ . + . + . + "false"^^ . + "https://reactome.org/content/detail/$1"^^ . + . . - "1"^^ . - . - . - "1"^^ . - "BitterDB Compound" . - "http://www.alanwood.net/pesticides/$1.html"^^ . - . - . - "chemistry" . - "false"^^ . - "4195"^^ . - "^NOR\\d+$"^^ . - . - . - . - . - . - "protein" . - . - "cellular components" . - . - . - . - . - "doi"^^ . - . - . + "http://www.receptome.org/families/Frameset_family.asp?ProtType=Receptor&FamId=$1"^^ . + "Protein Ensemble Database" . + . + . + "Roman Laskowski" . + . + . + "unipathway" . + . + . + . + . + . + . + . + . + "subject" . + "^\\d+$"^^ . + . + . + . + . + "14"^^ . + . + "https://cropontology.org/rdf/CO_350:$1"^^ . + . + . + . + . + "National Bibliography Number" . + . + "https://registry.identifiers.org/registry?query=MIR:$1"^^ . + . + . + . + "structural bioinformatics" . + . + "protein" . + . + . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."^^ . + . + . + . + "^\\w+$"^^ . + . + "ontology" . + . + "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_$1"^^ . + . + . + "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref$1"^^ . . - . - "rwinslow@jhu.edu" . - "umls.st" . - "1000290"^^ . - . - "65"^^ . - . - "SNOMEDCT_US_2022_07_31" . - . - "transcriptomics" . - . - . - "http://purl.obolibrary.org/obo/EHDAA2_$1"^^ . - . - . - . - . - "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1"^^ . - . - "FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge."^^ . - "rateRule"^^ . - . - "false"^^ . - . + "438782"^^ . + "https://www.ebi.ac.uk/metabolights/"^^ . + "Minimal Anatomical Terminology" . + . + "molecular dynamics" . + . + "^[0-9][A-Za-z0-9]{3}$"^^ . + "Sirarat Sarntivijai" . + "life science" . + "https://pubchem.ncbi.nlm.nih.gov/compound/$1"^^ . + "19803"^^ . + "00100037"^^ . + "NONCODE v4 Gene" . + . + "doqcs.model" . + . + . + . + . + "spider" . + "^\\d+$"^^ . + "false"^^ . + . + . + . + "mmdb" . + . + . + . + . + . + . + . + "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France)."^^ . + . + "http://pax-db.org/#!protein/$1"^^ . + "Costal and Marine Ecological Classification Standard" . + "obo" . + . + . + . + . + . + . + . + . + "molecules" . + "^\\d+$"^^ . + "sequence" . + "Scopus Researcher" . + "citexplore" . + "https://biopragmatics.github.io/debio/$1"^^ . + . + "true"^^ . + . + "An application ontology designed to annotate next-generation sequencing experiments performed on RNA."^^ . + "https://run.biosimulations.org/simulations/$1"^^ . + "chebi" . + "http://vocab.getty.edu/page/tgn/"^^ . + . + "false"^^ . + . + "http://www.w3.org/2003/01/geo/wgs84_pos#$1"^^ . + . + . + . + "myco.lepra" . + . + . + . + . + "dna" . + "kyinno" . + "https://www.scopus.com/affil/profile.uri?afid="^^ . + . + "false"^^ . + . + . + "false"^^ . + . + "http://dictybase.org/gene/"^^ . + . +_:N26c0c05c822d47a285ae363ae8b52b83 "W. Ted Klein" . + . + . + . + . + "false"^^ . + . . - . - . - . - . - "protein" . - . - . - "^Os\\S+g\\d{7}$"^^ . - . - "false"^^ . - "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research."^^ . - "asrp" . - "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode."^^ . - . - . - . - . - . - "53784"^^ . - "https://bioregistry.io/pscdb:"^^ . - "systems biology" . - "00620027"^^ . - "The METLIN (Metabolite and Tandem Mass Spectrometry) Database is a repository of metabolite information as well as tandem mass spectrometry data, providing public access to its comprehensive MS and MS/MS metabolite data. An annotated list of known metabolites and their mass, chemical formula, and structure are available, with each metabolite linked to external resources for further reference and inquiry."^^ . - . - "genome" . - "immunology" . - . - "Biofactoid" . - "false"^^ . - . - "4005"^^ . - . - "Rebecca Jackson" . - . - . - . - . - . - . - . - "false"^^ . - "^\\d{4}-\\d+-\\d+-\\d+$"^^ . - "https://w3id.org/aio/"^^ . - "http://purl.obolibrary.org/obo/IDO_"^^ . - . - "http://purl.org/spar/pro/"^^ . - "Clinical measurement ontology" . - "^\\d{9}$"^^ . - . - . - . - . - . - "dpo" . - . - "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . - . - . - "ontology" . - . - . - "life science" . - . - "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models."^^ . - . - "RNA ontology" . - "gmd.ref" . - . - "1122888"^^ . - "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."^^ . - . - . - . - "metabolite" . - "https://europepmc.org/article/CTX/"^^ . - . - "nutritional science" . - "The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary relationships."^^ . - "false"^^ . - . - . - "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"^^ . - "lcsh" . - "false"^^ . - . - "false"^^ . - . - . - "http://www.ebi.ac.uk/efo/EFO_"^^ . - "^2\\d{4}$"^^ . - "The Drug-Drug Interactions Ontology" . - . - . - . - . - "N21"^^ . - "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$"^^ . - "support@ccdc.cam.ac.uk" . - "284196006"^^ . - . - . - . - "https://prosite.expasy.org/"^^ . - . - "https://bioregistry.io/collection/$1"^^ . - "ERR436051"^^ . - "signaling-gateway" . - "urgi-contact@versailles.inra.fr" . - . - "^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$"^^ . - "EMLSAT00000003403"^^ . - . - . - . - . - "https://www.cbioportal.org/study/summary?id="^^ . - "preclinical studies" . - . -_:Nbe5c01d384744deab6e86f31b600b4a5 "Jim Amsden" . - . - . - . - . - . - "Jennifer C. Giron" . - . - . - . - . - . - "Stefanie Seltmann" . - . - . - . + . + . + . + "https://www.ebi.ac.uk/ena/data/view/"^^ . + . + . + . + "54"^^ . + . + . + "ecosystem science" . + "false"^^ . + "BDGP gene disruption collection provides a public resource of gene disruptions of Drosophila genes using a single transposable element."^^ . + . + "false"^^ . + "false"^^ . + . + . + . + "igrhcellid" . + . + "10194"^^ . + . + "chembl" . + . + . + "Suzi Aleksander" . + . + . + "It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources"^^ . + . + "false"^^ . + . + "false"^^ . + "https://omim.org/MIM:"^^ . + . + . + . +_:N216cbdecc2d7444289dbaf0f948d7bb1 "helpdesk@cropontology-curationtool.org" . + . + . + . + "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1"^^ . + . + . + . + "^(MNXM\\d+|BIOMASS|WATER)$"^^ . + "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$"^^ . + "3532759"^^ . + "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id="^^ . + . + . + . + "false"^^ . + . + "false"^^ . + . + . + . + "protocol" . + "Sweet Potato ontology" . + . + . + . + . + "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#$1#exprPerTissueTable"^^ . + . + "T01B6.1"^^ . + "microbiology" . + "http://www.w3.org/ns/adms#"^^ . + . + . + "15567"^^ . + . . + "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=$1"^^ . + . + . + . + "topfind" . + . + . + . + "nsf.award" . + . + . + . + . + . "http://www.receptors.org/nucleardb/proteins/"^^ . - . - . - . - . - . + . + "storedb.dataset" . + "https://umgear.org/p?id=$1"^^ . + . + "MMAR_2462"^^ . + "^\\d+$"^^ . + "lincs.protein" . + "The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health records (EHRs) involved in the care of the pregnant woman, and of her baby."^^ . + . + "sdis" . + . + . + . + . + . + . + . + "Carlos Oscar S. Sorzano" . + . + . + "The pre-IND tracking number for submissions to the FDA"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/TAO_$1"^^ . + . + . + . + . + . + "http://agroportal.lirmm.fr" . + . + . + . + "img.gene" . + . + "false"^^ . + . + "bartoc" . + "2224"^^ . + . "https://www.uniprot.org/database/$1" . - . - . - "http://purl.unep.org/sdg/SDGIO_"^^ . - "false"^^ . - . - . - . - . - "gainesville.core" . - "organism supplier" . - . - . - "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - . - "aio" . - . - "genetics" . - . - . - . - "https://bioregistry.io/gmd:"^^ . - "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"^^ . - . - . - . - "structure" . - . - "CAL0003079"^^ . - . - . - . - . - . - . - . - "https://proteinensemble.org/$1"^^ . - . - "https://bioregistry.io/dragondb.protein:"^^ . - . - . - "Cell Version Control Repository" . - . - "jaiswalp@science.oregonstate.edu" . - . - . - "^[0-9a-z]{24,24}$"^^ . - . - . - . - "phylogenetics" . - "taxonomy" . - . - . - . - "^\\w+$"^^ . - . - . - . - . + . + "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt="^^ . + . + . + . + . + . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites."^^ . + . + . + . + "^e\\d+$"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc."^^ . + "obo" . + . + . + _:Nf607a80abc1c4f09ab04e73093c67475 . + . + "http://www.co-ode.org/ontologies/galen#$1"^^ . + "^\\d{7}$"^^ . + . + . + . + "life science" . + . + . + . + . + . + . + . + . + "^TTHERM\\_\\d+$"^^ . + . + . + . + "functional genomics" . + "false"^^ . + "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides locus information in RAP-DB."^^ . + . + . + "http://purl.obolibrary.org/obo/XCO_$1"^^ . + "FAIRsharing.62qk8w" . + . + "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID="^^ . + "^\\d+$"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/MS_"^^ . + . + "http://www.cabri.org/CABRI/srs-bin/wgetz?-e+-page+EntryPage+[$1]"^^ . + . + . + . + . + "life science" . + . + . + . + . + . + "noaa.cameo" . + . + . + "^MSV\\d+$"^^ . + . + . + . + "Ontology of Biological Attributes" . + . + . + "transcriptomics" . + "goeco" . + . + . + . + "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. SubstrateDB contains molecular information on documented protease substrates."^^ . + "true"^^ . + . + . + "^\\d{8}$"^^ . + . + "^\\d{7}$"^^ . + . + "SNOMEDCT_2005_07_31" . + . + . + . + . + . + . + "humanities" . + "ontology" . + . + . + "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=$1"^^ . + . + "http://immunet.cn/bdb/index.php/mimoset/$1"^^ . + . + . + "Database portal containing replicate experiments of different assays and samples"^^ . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/LEPAO_"^^ . + . + . + "G02681"^^ . + . + "The Olfactory Receptor Database (ORDB) is a repository of genomics and proteomics information of olfactory receptors (ORs). It includes a broad range of chemosensory genes and proteins, that includes in addition to ORs the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfactory receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), fungal pheromone receptors (FPRs)."^^ . + . + "https://w3id.org/oc/oci/"^^ . + . + "The Peruvian Clinical Trials Registry - REPEC is a non-profit online information system developed in 2007 by INS. It is a publicly accessible prospective registry aimed at providing information about clinical trials underway in Peru. REPEC also includes Registries for Trial Sites, Institutional Research Ethics Committees, Sponsors and Contract Research Organizations. REPEC contains records of clinical trials since 1995. Since December 14, 2012, the Peruvian National Institute of Health, by means of the General Office for Research and Technological Transfer (OGITT), has started a process to improve REPEC and to join the WHO International Clinical Trials Registry Platform (ICTRP) and to be acknowledged as a Primary Registry. More information about primary registries is available in ICRTP at http://apps.who.int/trialsearch/. (from website)"^^ . + . + "false"^^ . + . + . + "European Bank for induced pluripotent Stem Cells" . + . + . + . + . + . + "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=$1"^^ . + . + "http://purl.obolibrary.org/obo/BSPO_"^^ . + "false"^^ . + . + "Christopher Mull" . + "1044544"^^ . + "Castor bean ontology" . + . + "19757"^^ . + . + . + . + "http://purl.bioontology.org/ontology/IDODEN_"^^ . + . + "sgn" . + . + "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons."^^ . + . + "clinical trials" . + . + . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OlatDv_"^^ . + "false"^^ . + . + . + . + . + "https://transyt.bio.di.uminho.pt/reactions/$1"^^ . + "http://champ-project.org/images/ontology/cao.owl#CAO_$1"^^ . + . + . + . + "0100010"^^ . + "cst" . + . + "miriam.collection" . + "chemistry" . + "ordo.orphanet@inserm.fr" . + "obo" . + "eukaryotic" . + . + . + . + "A0A009E7X8"^^ . + . + . + . + "false"^^ . + . + . + "tair.gene" . + "https://uniresolver.io/#did:"^^ . + "Research Organization Registry" . + . + "miro" . + . + . + "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system."^^ . + . +_:N9c7ccd46735d4414b9be37bf3980a722 "Maria Herrero" . + "http://eugenes.org:7072/.bin/fbidq.html?"^^ . + "satyasahoo@ieee.org" . + . + . + "The responsible person for a resource" . + "nmpdr" . + . + . + . + "SUM Breast Cancer Cell Line Knowledge Base" . + . + "Biofactoid" . + . + . + . + "Akt_PKB"^^ . + . + . + . + "FishBase" . + . + . + . + "http://purl.obolibrary.org/obo/GSSO_"^^ . + "OpenCitations Meta Identifier" . + . + . + . + . + "^\\d{7}$"^^ . + "http://purl.obolibrary.org/obo/NCBITaxon_"^^ . + . + "The Ageing Gene Database" . + . + . + . + "^\\d{7}$"^^ . + . + . + _:Nfd4722f4f2fc4fdb85afda178e8669b4 . + . + . + "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id="^^ . + "http://purl.obolibrary.org/obo/MICRO_$1"^^ . + . + "K"^^ . + . + . + . + . + . + "http://crdd.osdd.net/servers/virsirnadb/record.php?details=$1"^^ . + . + "Ensembl Protists" . + . + "http://dicom.nema.org/resources/ontology/DCM/"^^ . + . + "drugcentral" . + . + "scr" . + "992"^^ . + . + "MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations."^^ . + . + "PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number."^^ . + . + "false"^^ . + "false"^^ . + . + "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information."^^ . + . + "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." . + "mo" . + . + . + . + . + "false"^^ . + "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=$1"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/FLU_$1"^^ . + "md.tyers@umontreal.ca" . + . + . + . + . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital snapshot is a single-time output of the microenvironment (including basement membranes and the vascular network), any cells contained within, and essential metadata. Cells may include phenotypic data."^^ . + "PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase."^^ . + . + "false"^^ . + . + "bitbucket" . + . + . + "false"^^ . + "EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications)."^^ . + . + . + . + . + "Cell Signaling Technology Antibody" . + . + . + "Colin Batchelor" . + . + . + . + . + . + . + . + "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays."^^ . + _:Nd4c2dc2769a94670873d7070c483e69c . + . + "^[A-Za-z0-9]+$"^^ . + . + "botany" . + "Information about research projects that NSF has funded since 1989 can be found by searching the Award Abstracts database. The information includes abstracts that describe the research, and names of principal investigators and their institutions. The database includes both completed and in-process research."^^ . + . + . + "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id="^^ . + . + . + . + . + . + "domain" . + . + . + . + . + . + . + . + . + "dna" . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "HsapDv" . + "^\\w+$"^^ . + . + "Image Data Resource" . + . + . + . + . + . + "false"^^ . + . + . + . + . + "ASRP1423"^^ . + . + "C0020004/4992"^^ . + . + . + . + . + . + . + . + "false"^^ . + "Datanator Reaction" . + . + "Amazon Standard Identification Number" . + . + "000000341"^^ . + "botany" . + . + . + "http://sabiork.h-its.org/newSearch?q="^^ . + . + . + . + . + "erv" . + . + . + "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac=$1"^^ . + . + . + . + . + . + . + "^\\d{7}$"^^ . + "geonames" . + . + . + . + . + "0000138"^^ . + "https://sparontologies.github.io/fabio/current/fabio.html#$1"^^ . + . + "ontology" . + . + "life science" . + . + . + . + . + "false"^^ . + "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. This collection is a subset of UniProtKB, and provides a means to reference isoform information."^^ . + "The International Medical Device Regulators Forum (IMDRF) is a forum of voluntary medical device regulators from around the world who have come together to build on the strong foundational work of the Global Harmonization Task Force on Medical Devices (GHTF), and to accelerate international medical device regulatory harmonization and convergence."^^ . + . + . + "http://w3id.org/nkos/$1"^^ . + . + "485991"^^ . + "genome" . + . + . + . + . + . + . + . + . + "ontology" . + . + . + "ontie" . + . + "2022.07.08.499378"^^ . + "Global Proteome Machine Database" . + "bel" . + . + . + "BioModels Database" . + "NIF Standard Ontology: Brain Regions" . + "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue="^^ . + "sequence" . + . + . + "Agilent Probe" . + . + . + . + "icd9cm" . + . + . + "ARP-1513"^^ . + . + . + "Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB."^^ . + . + . + . + . + "cob" . + "cherry@genome.stanford.edu" . + . + . + . + "false"^^ . + "PF" . + "Protein Model Database" . + . + . + . + . + . + "Laia Subirats" . + . + "organism supplier" . + . + "false"^^ . + "http://purl.obolibrary.org/obo/T4FS_"^^ . + . + . + "https://ontology.iedb.org/ontology/ONTIE_"^^ . + "ontology and terminology" . + "Coli Genetic Stock Center" . + . + . + . + "http://purl.obolibrary.org/obo/MCO_$1"^^ . + . + "ACC-1"^^ . + . + "iceberg.ice" . + "Evan Patterson" . + . + . + . + . + "http://oncotree.mskcc.org/api/tumorTypes/search/code/"^^ . + . + . + "http://www.w3.org/2003/01/geo/wgs84_pos#"^^ . + . + . + . + "^\\d+$"^^ . + . + "http://search.sisuproject.fi/#/variant/"^^ . + . + "Leafsnap" . + "Web Annotation Ontology" . + . + "descriptor" . + "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . + . + . + "life sciences" . + "https://scicrunch.org/scicrunch/interlex/view/ilx_"^^ . + "false"^^ . + "robert.hoehndorf@kaust.edu.sa" . + "hasDbXref"^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + "A*01:01:01:01"^^ . + . + . + "CranioMaxilloFacial ontology" . + . + . + "P01116"^^ . + . + . + . + . + . + . + . + . + . + "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source."^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/TAXRANK_$1"^^ . + "fishbase.species" . + "90801"^^ . + . + "software engineering" . + . + "http://data.food.gov.uk/codes/foodtype/id/$1"^^ . + "http://www.bioassayontology.org/bao#BAO_"^^ . + . + . . - . - . - . - . - "https://hdl.handle.net/hdl:20.500.12582/"^^ . - . - "53504"^^ . - "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#"^^ . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)."^^ . - . - "obo_rel" . - . - . - . - . - . - "https://goldbook.iupac.org/terms/view/$1"^^ . - "https://bioregistry.io/p3db.protein:"^^ . - . - . - "Biomedical Informatics Research Network Lexicon" . - . - . - . - . - . - "5.A.1.1.1"^^ . - "Polymorphism and mutation databases"^^ . - . - . - . - . - . - . - . - . - "syoid" . - . - . - . - "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain."^^ . - . - . - "voc4cat" . - . - . - . - . - . - . - . - . - . - . - "ontology" . - . - . - . - . - . - . - "Cell line collections (Providers)"^^ . - . - . - "0000400"^^ . - "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels."^^ . - . - . - . - . - "The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January, 2013."^^ . - . - . - "obo" . - . - "Woody Plant Ontology ontology" . - . - . - . - . - . - . - . - . - . - . - . - "https://go.drugbank.com/reactions/"^^ . - . - . - . - . - . - . - "false"^^ . - "Protein Ontology" . - . - "taxrank" . - . - "This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs"^^ . - . - . - . - . - . - "mediadive.ingredient" . - "https://fairsharing.org/$1" . - . - . - . - "https://www.sharkipedia.org/trends/$1"^^ . - "Gramene QTL" . - . - . - . - "SitEx" . - "protein" . - . - "true"^^ . + . + . + . + . + "ontology" . + "^[CD]\\d+$"^^ . + . + . + "051"^^ . + . + "ontology" . + . + . + . + . + "false"^^ . + . + . + . + "Ontology of species-neutral phenotypes observed in pathogen-host interactions."^^ . + . + . + . + . + . + . + . + . + "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1"^^ . + . + . + . + . + "false"^^ . + . + . + "refseq" . + . + . + . + "false"^^ . + "nfdi4chem.osmo" . + . + . + . + . + . + . + . + "ontology" . + . + . + . + "selventa" . + "false"^^ . + "ontology" . + "The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI, WTSI, and Ensembl. The long term goal is to support convergence towards a standard set of gene annotations."^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/MAXO_$1"^^ . + "Gene Ontology Causal Assembly Model" . + . + . + "278"^^ . + . + "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value="^^ . + . + . + . +_:N1603a0611b164486bead2cd509e1f9d8 "Ian Davis" . + . + . + . + "NCI Data Commons Framework Services" . + . + . + . + . + "DB14938"^^ . + . + "https://www.ebi.ac.uk/interpro/genomeproperties/#$1"^^ . + . + . + . + . + "false"^^ . + "12345"^^ . + "KEGG BRITE is a collection of hierarchical classifications (see new hierarchies and last updates) representing our knowledge on various aspects of biological systems. In contrast to KEGG PATHWAY, which is limited to molecular interactions and reactions, KEGG BRITE incorporates many different types of relationships."^^ . + . + . + . + . + . + . + . + "https://biopragmatics.github.io/providers/schem/$1"^^ . + "has resolver formatter" . + "http://purl.obolibrary.org/obo/RXNO_"^^ . + . + . + "infectious disease medicine" . + . + . + "codelink" . + . + . + . + . + "https://data.bloodpac.org/ga4gh/drs/v1/objects/"^^ . + . + . + . + "term"^^ . + . + "human health" . + "life science" . + "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id="^^ . + . + . + . + . + . + . + "KEGG COMPOUND" . + . + "cell cycle" . + "biochemistry" . + "^\\d{4,}((_[asx])?_at)$"^^ . + "9"^^ . + "http://purl.obolibrary.org/obo/HABRONATTUS_"^^ . + "https://www.ebi.ac.uk/gwas/studies/"^^ . + . + . + . + "daniel.c.berrios@nasa.gov" . + . + "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."^^ . + "nkos" . + . + "NLXRES covers digital resources. Most classes are high level types covering everything from databases and sourcecode to source code licenses and instrument supplier websites"^^ . + "virgen" . + . + "collagenmutdb" . + . + "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1"^^ . + . + . + . + . + . + "obo" . + "Gene"^^ . + . + . + "unii" . + "false"^^ . + . + . + . + . + "genetics" . + . + . + "microbiome" . + . + "debio" . + . + "SNOMEDCTCT_2019_03_01" . + "VirGen" . + . + . + "http://addgene.org/"^^ . + "http://www.bioguo.org/AnimalTFDB/family.php?fam=$1"^^ . + . + . + "ontology" . + . + "https://www.dsmz.de/collection/catalogue/details/culture/$1"^^ . + . + . + . + . + "Social Behavior in insects"^^ . + "The International Classification of Diseases (ICD) is designed to promote international comparability in the collection, processing, classification, and presentation of mortality statistics."^^ . + "GR_QTL" . + . + "rwinslow@jhu.edu" . + . + "microarray" . + "metascience" . + . + . + . + . + . + . + . + . + . + . + "database" . + "^[A-Za-z]+\\/[0-9]+$"^^ . + . + "false"^^ . + . + . + . + . + . + . + . + "hog" . + . + "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:$1"^^ . + . + . + . + . + . + "Network Data Exchange" . + "SIGNOR" . + . + "^[A-Z0-9]{6,7}$"^^ . + "MMP0523"^^ . + . + . + "0000093"^^ . + "structural biology" . + . + . + . + . + "environmental science" . + . + "OdorDB stores information related to odorous compounds, specifically identifying those that have been shown to interact with olfactory receptors"^^ . + "ontology" . + . + . + . + . + . + . + . + "biomedical science" . + . + . + "PDC000351"^^ . + "development" . + "ontology" . + . + . + "Locus Reference Genomic" . + "taxonomy" . + "exac.gene" . + . + . + . + "life science" . + "epidemiology" . + "ACTRN" . + . + "https://www.alzforum.org/mutations/$1"^^ . + "false"^^ . + . + . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode="^^ . + . + . + . + "The Open Data Commons for Traumatic Brain Injury is a cloud-based community-driven repository to store, share, and publish traumatic brain injury research data."^^ . + . + "ortholog" . + "brenda.ligandgroup" . + "epo" . + . + "^\\w+$"^^ . + . + "http://bactibase.hammamilab.org/$1"^^ . + . + "adrienrougny@gmail.com" . + . + "FuTRES Ontology of Vertebrate Traits" . + "biology" . + "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823"^^ . + "Paleobiology Database" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/"^^ . + . + "dna" . + . + "http://leafsnap.com/species/$1/"^^ . + "false"^^ . + "https://pharmacome.github.io/conso/$1"^^ . + "irgsp" . + "^\\w+$"^^ . + . + . + . + "botany" . + . + . + "Open Citation Identifier" . + . + "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER."^^ . + . + . + . + . + . + "biomedical science" . + . + . + . + . + "Welcome to the web site of the Handle.Net Registry (HNR), run by Corporation for National Research Initiatives (CNRI). CNRI is a Multi-Primary Administrator (MPA) of the Global Handle Registry (GHR), authorized by the DONA Foundation to allot prefixes to users of the Handle System. The DONA Foundation is a non-profit organization based in Geneva that has taken over responsibility for the evolution of CNRI's Digital Object (DO) Architecture including outreach around the world. One of the Foundation's responsibilities is to administer and maintain the overall operation of the GHR, a task that was previously performed by CNRI. (from website)"^^ . + . + . + . + _:N4dc05b1caeac4b4d91be4661e7a222e7 . + . + . + . + "http://purl.org/cerif/frapo/"^^ . + . + "^\\d{7}$"^^ . + "https://reporter.nih.gov/project-details/"^^ . + . + . + "Adrien Coulet" . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID=$1"^^ . + . + "false"^^ . + "^BAMSC\\d+$"^^ . + . + . + "UniProt Diseases" . + . + "An ontology used to describe data resources in the Arctic Data Center (https://arcticdata.io)."^^ . + . + "^\\d{7}$"^^ . + "^\\d+$"^^ . + "false"^^ . + "http://purl.obolibrary.org/obo/EHDAA_"^^ . + "pharmacology" . + . + "identifier for a chemical compound per EINECS or ELINCS"^^ . + . + "https://www.kegg.jp/entry/"^^ . + "false"^^ . + . + "http://purl.obolibrary.org/obo/MC_"^^ . + . + "Nematode & Neglected Genomics" . + "rgap" . + "http://www.kegg.jp/entry/"^^ . + "cryptodb" . + "^\\d+$"^^ . + . + . + . + "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. "^^ . + "This website supports the undertaking and oversight of clinical trials in the European Union (EU) and European Economic Area (EEA). It is part of a broad initiative to transform the EU/EEA clinical trials environment in support of large clinical trials in multiple European countries, to the benefit of medical innovation and patients. (from homepage)"^^ . + "Alberto Traverso" . + . + "f665230-5267"^^ . + "http://purl.obolibrary.org/obo/TAHE_"^^ . + . + . + "ontology" . + . + . + . + . + . + . + "omit" . + . + . + . + "Health Procedure Ontology" . + "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . + . + . + "stacia@stanford.edu" . + . + "MESHD" . + . + "false"^^ . + "http://csbl.bmb.uga.edu/DOOR/operon.php?id="^^ . + . + "01625"^^ . + . + "Liliana Andres Hernandez" . + . + . + . + "Vaccine Adjuvant Compendium" . + "sean@arabidopsis.org.uk" . + . + . + . + . + . + . + "ADH1"^^ . + "SNOMEDCT_US_2020_09_01" . + . + . + "false"^^ . + . + . + . + . + . + . + "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents."^^ . + "obo" . + "biomedical science" . + . + . + "^\\d{7}$"^^ . + "https://bioregistry.io/genecards.genenote:"^^ . + . + "false"^^ . + "r3d100014165" . + . + "http://bactibase.hammamilab.org/"^^ . + . + . + "^\\d{7}$"^^ . + . + . + "COSMIC Gene" . + . + . + . + "false"^^ . + "sider.effect" . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "UniProtKB" . + . + . + "https://www.deciphergenomics.org/syndrome/$1"^^ . + "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?"^^ . + "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."^^ . + . + . + . + . + . + . + . + "A database of fly neurons and pathways with an associated 3D viewer."^^ . + "deletion" . + . + "^\\d+$"^^ . + . + "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/"^^ . + . + . + . + . + "https://www.genenames.org/cgi-bin/gene_symbol_report?match="^^ . + "molecular medicine" . + . + . + "false"^^ . + . + . + . + "C063233"^^ . + "obo" . + . + "MassIVE" . + . + . + . + . + "somatic" . "PA447218"^^ . - . - . - . - . - "ClinVar Submitter" . - . - "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1"^^ . - "treebase" . - "https://biopragmatics.github.io/providers/diseaseclass/$1"^^ . - "ontology" . - "compulyeast" . - . - "The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors."^^ . - . - "International Classification of Diseases, 9th Revision" . - "false"^^ . - "Golm Metabolome Database Reference Substance" . - . - . - . - "life science" . - "ProGlycProt (Prokaryotic Glycoprotein) is a repository of bacterial and archaeal glycoproteins with at least one experimentally validated glycosite (glycosylated residue). Each entry in the database is fully cross-referenced and enriched with available published information about source organism, coding gene, protein, glycosites, glycosylation type, attached glycan, associated oligosaccharyl/glycosyl transferases (OSTs/GTs), supporting references, and applicable additional information."^^ . - . - "false"^^ . - "164750"^^ . - . - . - . - . - "Human Phenotype Ontology" . -_:Na8a26c21d620429599673f6ff0542396 "interhelp@ebi.ac.uk" . - . - "biology" . - . - "false"^^ . - "gene expression" . - . - . - "embryonic stem cell" . + . + . + . + "31253.11.sciencedb.j00001.00123"^^ . + . + "interaction" . + . + . + "genome" . + "social and behavioural science" . + . + . + . + "Cell line collections (Providers)"^^ . + "70"^^ . + . + . + "The Vital Sign Ontology (VSO) is an extension of the Ontology for General Medical Science (OGMS). VSO covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. "^^ . + . + "false"^^ . + . + . + "epidemiology" . + "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br"^^ . + "BioNumbers is a database of key numberical information that may be used in molecular biology. Along with the numbers, it contains references to the original literature, useful comments, and related numeric data."^^ . + . + . + "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID="^^ . + "umls.st" . + "false"^^ . + . + . + . + . + . + . + . + "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression."^^ . + . + "ABL1"^^ . + . + "https://orcid.org/"^^ . + . + . + "MEROPS Entry" . + . + "^\\d{7}$"^^ . + . + . + "millipore" . + . + "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=$1"^^ . + . + "https://www.ebi.ac.uk/pride/archive/projects/"^^ . + "https://www.alliancegenome.org/accession/"^^ . + . + . + . + . + . + "The database of Annotated regulatory Binding Sites (from orthologous promoters), ABS, is a public database of known binding sites identified in promoters of orthologous vertebrate genes that have been manually curated from bibliography."^^ . + . + "ymdb" . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "Mouse pathology ontology" . + . + . + "morpheus.lab/morpheus"^^ . + . + . + . + "gene" . + "Reaxys" . + . + "Chickpea Trait Dictionary in template v5 - ICRISAT - July 2015"^^ . + . + "Ali Syed" . + . + . + . + . + "metacyc.compound" . + . + . + "ChecklistBank" . + "^\\d{7}$"^^ . + "allele" . + . + "antibodyregistry" . + "http://www.ifomis.org/bfo/1.1/snap#$1"^^ . + . + "ontology" . + . + "database management" . + "REDflyis a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs)."^^ . + "ctd.chemical" . + . + . + . + "owl" . + "CATH is a classification of protein structural domains. We group protein domains into superfamilies when there is sufficient evidence they have diverged from a common ancestor. CATH can be used to predict structural and functional information directly from protein sequence."^^ . + . + . + . + . + . + "obo" . +_:Nf9f7c3b2293d498c9c5b447a07a5fe53 "Tim Vandermeersch" . + . + . + . + "cell lines" . + "comparative genomics" . + "false"^^ . + . + "http://purl.obolibrary.org/obo/VT_"^^ . + "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records."^^ . + . + . + "functional genomics" . + . + . + . + "ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities."^^ . + . + . + . + . + "computer science" . + . + . + . + "DragonDB Protein" . + "false"^^ . + . + "http://purl.obolibrary.org/obo/NGBO_$1"^^ . + "http://purl.bioontology.org/ontology/IDODEN_$1"^^ . + "life science" . + "http://cerevisiae.oridb.org/details.php?id=$1"^^ . + "life science" . + "true"^^ . + . + "small molecule" . + . + "Fetal Calf Serum-Free Database" . + . + . + "http://purl.obolibrary.org/obo/OGI_$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "ontology" . + "Ribocentre" . + . + . + "^.*?--%3E.*?$"^^ . + "100"^^ . + "rnajunction" . + . + . + . + . + "Omar Harb" . + . + . + . + "http://purl.obolibrary.org/obo/HANCESTRO_"^^ . + . + . + . + . + "ontology" . + "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1"^^ . + . + . + . + "https://ecocyc.org/gene?id=$1"^^ . + . + . + . + . + . + "PED00017e001"^^ . + "fovt" . + "The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host and Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available."^^ . + "probonto" . + . + . + . + "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."^^ . + . + "dailymed" . + "false"^^ . + . + "Issaku Yamada" . + . + . + "https://purl.dataone.org/odo/SASAP_$1"^^ . + . + . + "https://www.ebi.ac.uk/arrayexpress/arrays/$1"^^ . + . + . + "false"^^ . . - "IRD Segment Sequence" . - . - "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1"^^ . + . + . + "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege."^^ . + "https://github.com/combine-org/combine-specifications/blob/main/specifications/$1.md"^^ . + "https://proteinensemble.org/"^^ . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/dbvar/variants/"^^ . + . + . + _:N641d58cfc2994b59bbd0f1fa78f75e74 . + . + . + "false"^^ . + "swisslipid" . "^\\d{7}$"^^ . - . - . - . - . - . - . - . - "RxNorm" . - "MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats."^^ . - . - . - . - "genetics" . - "OMIM" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/GENEPIO_$1"^^ . - . - . - "botany" . - . - . - . - "functional genomics" . - "giant.plankton@gmail.com" . - "unipathway" . - . - "obo" . - "structural biology" . - . - . - "Rahuman Sheriff" . - "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images."^^ . - "is deprecated" . - "uc001rvw.5"^^ . - . - "agriculture" . - "life science" . - . - "sean@arabidopsis.org.uk" . - "false"^^ . - . - "bakerc@unb.ca" . - "http://cerevisiae.oridb.org/details.php?id="^^ . - . - "Pfam" . - . - . - . - "life science" . - "false"^^ . - "icd9cm" . - "Luis González-Montaña" . - "Dendritic cell" . - "Lipid"^^ . - . - "chemistry" . - . - "^[a-zA-Z0-9_\\-]+(/.*?)?$"^^ . - . - . - . - "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."^^ . - "siiraa@umich.edu" . - . - . - "MarFun is manually curated database for marine fungi which is a part of the MAR databases."^^ . - "CAPS-DB" . - . - "Ontology for computer aided process engineering" . - . - . - . - "https://bioregistry.io/flybrain.ndb:"^^ . - . - . + "http://purl.obolibrary.org/obo/MMO_$1"^^ . + . + . + . + . + . + "2842"^^ . + "sewilson@lbl.gov" . + "NLXQUAL covers qualities and dispositions similar to the Phenotype And Trait Ontology (PATO)."^^ . + . + . + . + . + "Terry Hayamizu" . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"^^ . + . + "^\\d{6}$"^^ . + . + . + "false"^^ . + "https://www.swisslipids.org/#/entity/SLM:$1"^^ . + "false"^^ . + "46977"^^ . + . + "207LH0002X"^^ . + . + . + "true"^^ . + "Primate Brain Atlas" . + . + . + "tcb" . + "^FDB\\d+$"^^ . + . + "^5\\d{4}$"^^ . + . + . + . + . + . + . + "MIMIC III Database" . + "DDB0016567"^^ . + . + "https://www.inaturalist.org/users/"^^ . + "obo" . + . + . + . + "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$"^^ . + "https://www.novusbio.com/products/$1"^^ . + "ncbi.resource" . + . + "tissue" . + "biomedical science" . + . + . + "nextProt" . + . + . + . + . + "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/$1"^^ . + "cath.domain" . + "000004"^^ . + . + "subject agnostic" . + . + "protein" . + "http://avis.princeton.edu/pixie/viewgraph.php?graphID=$1"^^ . + . + "AC00963334"^^ . + . + "false"^^ . + "AGRO" . + . + . + . + . + "false"^^ . + "false"^^ . + "genetree" . + "genomics" . + "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and other nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references WormBase-accessioned entities."^^ . + . + . + . + "ontology and terminology" . + "http://purl.obolibrary.org/obo/MOP_$1"^^ . + . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . + . + "expression" . + "false"^^ . + . + "dna" . +_:Ncb371b9251d84927994678e142aadc0e "custserv@nlm.nih.gov" . + "Sigma Aldrich" . + . + . + "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf="^^ . + . + . + "mfoem" . + . + . + . + "MGnify Project" . + . + "mouse" . + . + "http://multicellds.org/MultiCellDB/"^^ . + . + . +_:N2370bb67565241488d5b2870551a9eb7 "Cynthia Hake" . + . + "false"^^ . + "biomedical science" . + "hp" . + "4779"^^ . + . + "FBtr0084214"^^ . + . + . + "IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR."^^ . + . + . + "Scholia Registry" . + . + . + . + "Gerhard Mayer" . + . + "neurovault.collection" . + . + "person" . + . + . + . + . + "forest management" . + "http://purl.obolibrary.org/obo/MIRO_"^^ . + . + "cgd7_230"^^ . + "6472"^^ . + "false"^^ . + "0000088"^^ . + . + . + "http://purl.obolibrary.org/obo/TXPO_"^^ . + . + . + . + . + "protein" . + . + . + "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=$1"^^ . + . + "protein" . + . + . + . + "Virus-Host DB organizes data about the relationships between viruses and their hosts, represented in the form of pairs of NCBI taxonomy IDs for viruses and their hosts. Virus-Host DB covers viruses with complete genomes stored in 1) NCBI/RefSeq and 2) GenBank whose accession numbers are listed in EBI Genomes. The host information is collected from RefSeq, GenBank (in free text format), UniProt, ViralZone, and manually curated with additional information obtained by literature surveys."^^ . + . + "SRS086444"^^ . + . + "0000108"^^ . + . + "amphx" . + . + . + "biodiversity" . + "epidemiology" . + "string" . + . + "https://phytochem.nal.usda.gov/phytochem/chemicals/show/"^^ . + "^\\w{2,4}\\d{5}$"^^ . + . + "Emotion Ontology" . + "https://n2t.net" . + . + "life sciences" . + . + . + "obo" . + . + "small molecules" . + . + "false"^^ . + "E-cyanobacterium.org is a web-based platform for public sharing, annotation, analysis, and visualisation of dynamical models and wet-lab experiments related to cyanobacteria. It allows models to be represented at different levels of abstraction — as biochemical reaction networks or ordinary differential equations.It provides concise mappings of mathematical models to a formalised consortium-agreed biochemical description, with the aim of connecting the world of biological knowledge with benefits of mathematical description of dynamic processes. This collection references rules."^^ . + "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=$1"^^ . + "ontology" . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_organ_"^^ . + . + "mathematics" . + . + "protein" . + "n.lenovere@gmail.com" . + . + . + "http://www.bind.ca/Action?identifier=bindid&idsearch=$1"^^ . + . + . + "VMH Gene" . + "http://purl.obolibrary.org/obo/OHMI_"^^ . + "primary health care" . + . + "http://www.kegg.jp/entry/"^^ . + . + . + "^\\d{7}$"^^ . + . + . + . + "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/"^^ . + "0000008"^^ . + . + . + . + . + . + . + "638309541"^^ . + "COG0001"^^ . + . + . + . + . + . + "Simple Standard for Sharing Ontological Mappings" . + "false"^^ . + . + . + . + . + "life science" . + . + "population genetics" . + "mlc" . + "structure" . + "^\\d+$"^^ . + . + . + . + "Dr. Duke's Phytochemical and Ethnobotanical Databases chemical" . + "false"^^ . + "false"^^ . + "clingene" . + "AOPWiki (Key Event)" . + . + "reactions" . + "taxonomy" . + "qb" . + . + . + "false"^^ . + . + . + "dna" . + . + . + . + "https://cropontology.org/rdf/CO_343:$1"^^ . + . + "hasPrimaryUriPattern"^^ . + . + . + . + . + "0000253"^^ . + . + . + . + "SNOMEDCT_US_2021_09_01" . + . + . + "^\\d+$"^^ . + . + . + . + . + . + "https://units-of-measurement.org/$1"^^ . + "nlx.qual" . + . + "earth science" . + . + . + . + . + . + "^\\d{7}$"^^ . + "mmp.cat" . + . + . + "^[\\w\\d\\.-]*$"^^ . + . + "An Affymetrix ProbeSet is a collection of up to 11 short (~22 nucleotide) microarray probes designed to measure a single gene or a family of genes as a unit. Multiple probe sets may be available for each gene under consideration."^^ . + "https://bioregistry.io/gabi:"^^ . + . + "false"^^ . + . + "disprot.region" . + "The Leibniz Institute DSMZ is the most diverse biological resource center in the world and one of the largest collections of microorganisms and cell cultures worldwide (bacteria, archaea, protists, yeasts, fungi, bacteriophages, plant viruses, genomic bacterial DNA as well as human and animal cell lines). The following designations are used as part of local unique identifiers:\n\n- `PC`: positive control\n- `NC`: negative control\n- `AS`: antiserum\n- `PV`: plant viruses\n- `RT`: recommended test\n- `ACC`: human or animal cell line\n- `DSM`: microorganism cell line"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands."^^ . + . + . + "Funding, Research Administration and Projects Ontology" . + . + "functional genomics" . + . + "http://purl.obolibrary.org/obo/OMO_"^^ . + _:N95542206a009415999a81d74302dc9b9 . + "https://uts.nlm.nih.gov/uts/umls/semantic-network/$1"^^ . + . + "The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. "^^ . + "gene function" . + . + . + . + "proteomics" . + . + . + . + "pseudomonas" . + . + "https://datacommons.org/browser/"^^ . + . + . + . + "life science" . + "https://www.uniprot.org/unirule/$1"^^ . + . + . + . + "ontology" . + . + . + . + "classification" . + "http://www.cathdb.info/cathnode/"^^ . + . + . + . + "radiology" . + "life science" . + . + . + . + "symp" . + "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way."^^ . + "invertebrate" . + . + . + . + . + . + . + . + "http://lincsportal.ccs.miami.edu/cells/#/view/$1"^^ . + . + "A terminology for the skills necessary to make data FAIR and to keep it FAIR."^^ . + "github.pull" . + . + "https://www.findacode.com/code.php?set=ICD10PCS&c="^^ . + "BAMS (Brain Architectural Management System) describes vertebrate neuroinformatics data at four levels of organization: expressed molecules, neuron types and classes, brain regions, and networks of brain regions."^^ . + "https://coconut.naturalproducts.net/compound/coconut_id/"^^ . + "false"^^ . + . + . + "bgee.family" . + "Imanis Life Sciences cell line products" . + "http://purl.obolibrary.org/obo/EO_$1"^^ . + "false"^^ . + "pw" . + . + . + "BioGRID Interactions" . + . + "^[0-9]+$"^^ . + "false"^^ . + . + . + "Bill Duncan" . + "^\\w+$"^^ . + . + "http://unite.ut.ee/bl_forw.php?nimi="^^ . + . + "UPC04349"^^ . + "^\\d+(\\w+)?$"^^ . + "ontology" . + . +_:N87bd32b830b94121b49a5ee2bcc891af "Michael J. Lincoln MD" . + . + . + "has reviewer" . + . + "pfey@northwestern.edu" . + . + "clo" . + . + . + "The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram."^^ . + "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id="^^ . + . + . + . + "vendor" . + "https://cordis.europa.eu/project/id/$1"^^ . + "https://www.iedb.org/reference/$1"^^ . + . + . + "pig" . + "The set of prefixes used in the Cellosaurus resource"^^ . + "video resource" . + "Gene Ontology" . + . + . + . + "Genome assembly database - INSDC accessions" . + . + . + . + . + . + . + "0002233"^^ . + "NLXINV" . + . + "ConfIDent Event" . + "false"^^ . + "false"^^ . + . + . + "jorvis@gmail.com" . + "2701"^^ . + "FAIRsharing Subject Ontology" . + . + "vuid" . + . + . + "false"^^ . + . + . + "life science" . + . + . + . + "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code="^^ . + "^\\d{8}$"^^ . + "false"^^ . + "false"^^ . + . + "jason.stajich@ucr.edu" . + "pathway" . + "11"^^ . + . + . + . + . + . + . + "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id="^^ . + "ali.syed@kaust.edu.sa" . + . + . + . + "http://purl.obolibrary.org/obo/FOVT_"^^ . + . + . + "QJ51RV02"^^ . + "http://www.isni.org/isni/"^^ . + "This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins."^^ . + . + . + . + "inxight" . + "http://swissregulon.unibas.ch/query/$1"^^ . + . + . + "false"^^ . + "cdt" . + . + . + . + . + "GeneAnnot: Microarray Gene Annotation" . + _:N609943db95f64f818021f2747975301e . + . + . + . + . + . + . + . +_:N90875648f8524cd48ed83e7dfcff07f3 "GenBank Support" . + . + . + "12969"^^ . + . + "false"^^ . + "UBPROP" . + . + . + "SKIP001214"^^ . + . + . + "ontology" . + "unigene" . + . + . . - . - . - "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just heart really means heart (CS 9-20). Timing details will be added to the abstract version of the ontology in a future release."^^ . - "Martin Kuiper" . - . - . - "1868"^^ . - . - . - "BP100000"^^ . - . - "00077f1c-c45a-47ba-8e6c-1bf6b6b43fce"^^ . - . - "disease" . - "false"^^ . - "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products."^^ . - . - . - "fungi" . - . - . - "NMRShiftDB structure" . - . - . - . - . - . - . - . - . - . - . - . - "inn" . - "false"^^ . - "^\\d{4}$"^^ . - . - "false"^^ . - "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"^^ . - . - "N0000001662"^^ . - "Electron Microscopy Data Bank" . - . - . - "biocuration" . - . - "^\\d{7}$"^^ . - "forest management" . - . - . - . - . - . - . - "false"^^ . - "bioinformatics" . - "ontology" . - . - "ABL1"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "67035"^^ . - "http://edamontology.org/operation_$1"^^ . - "Regulation of Transcription"^^ . - . - "http://www.xmetdb.org/xmetdb/protocol/$1"^^ . - "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1"^^ . - "http://purl.obolibrary.org/obo/CHEMINF_"^^ . - . - "subject agnostic" . - "Mental Functioning Ontology" . - . - . - . - . - "8"^^ . - . - . - . - . - "false"^^ . - . - . - . - . - "ViolinNet" . - . - . - . - . - . - . - . - "ArachnoServer" . - "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families."^^ . - . - "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23$1"^^ . - . - . - "4D Nucleome Data Portal Experiment Replicate" . - . - "SDY2614"^^ . - _:N9278d875d4954bfe96e8c9fb58122b64 . - . - . - "http://purl.obolibrary.org/obo/DDANAT_$1"^^ . - . - . - "sequence" . - . - . - "OMIM Phenotypic Series" . - . - . - . - . - . - . - "^\\d{1,7}$"^^ . - . - . - . - . - . - "gene" . - "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery."^^ . - "pier.buttigieg@awi.de" . - "^[0-9a-z_-]+$"^^ . - "ecn" . - . - . - "https://vectorbase.org/gene/$1"^^ . - . - "Nucleic Acids Phylogenetic Profiling" . - . - "https://www.metabolome-express.org/datasetview.php?datasetid=$1"^^ . - . - . - "Alberto Traverso" . - "50943"^^ . - "false"^^ . - . - _:N87ad6811330e431f950b1e30885e91e2 . - "datanator.gene" . - "UCR00513"^^ . - "elvira@imbb.forth.gr" . - . - "dc" . - . - . - "http://purl.obolibrary.org/obo/MPATH_$1"^^ . - . - . - . - . - . - . - "CIViC variant" . - "life science" . - "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name="^^ . - . - "56586"^^ . - . - . - "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1"^^ . - . - . - . - "obo" . - "http://ecmdb.ca/compounds/$1"^^ . - . - . - "dbgap" . - . - "false"^^ . - . - "true"^^ . - . - . - "^\\w+$"^^ . - . - "pathway" . - . - . - "A public place to process, interpret and share GC/MS metabolomics datasets."^^ . - . - . - . - "The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space"^^ . - "^\\w+$"^^ . - . - "biochemistry" . - "ontology" . - "C023"^^ . - "marine ecology" . - "BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it."^^ . - . - . - "Yaroslav Halchenko" . - . - "VEGA" . - . - "health science" . - . - . - . - . - . - "subject agnostic" . + . + "http://purl.obolibrary.org/obo/FOVT_$1"^^ . + "NCBITaxon" . + . + . + . + . + . + . + "rdo" . + "UP" . + . + "4000027"^^ . + "chembank" . + . + . + "psipar" . + "false"^^ . + "A controlled vocabulary to support the study of transcription in the human brain"^^ . + . + "119514"^^ . + "Orphanet" . + "^\\d{7}$"^^ . + . + "^M\\d{4}$"^^ . + "http://www.drugbank.ca/drugs/$1"^^ . + . + "false"^^ . + . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code="^^ . + . + . + . + . + . + . + "go.chemicals" . + . + . + "biology" . + . + . + . + "Variation Ontology" . + . + . + . + "false"^^ . + . + . + . + "Electron Microscopy Public Image Archive" . + . + . + . + . + . + . + "^[A-Za-z0-9+_.%-:]+$"^^ . + "systems biology" . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "false"^^ . + . + . + . + . + "^(\\w){3}$"^^ . + "false"^^ . + . + . + . + _:N14dff4050e56443cbb5c64756bfee9df . + "classification" . + "false"^^ . + . + "treebase" . + . + . + "DrugBank Salts" . + . + "frederic.bastian@unil.ch" . + "mobidb" . + . + "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L"^^ . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_"^^ . + "false"^^ . + . + "computational biology" . + . + "false"^^ . + "^S\\d+$"^^ . + . + "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . + . + "p.buttigieg@gmail.com" . + . + . + . +_:N8d2f6d39f29d41e38c577baad90b69f9 "Chebi Administrators" . + "genomics" . + . + . + . + . + "https://rarediseases.info.nih.gov/diseases/$1/index"^^ . + . + . + . + . + . + "Peer Bork" . + . + . + . + "gno" . + . + "ChiCTR2300070727"^^ . + . + . + . + . + "splicenest" . + . + "structural bioinformatcs" . + . + "ontology" . + . + . + . + "PMC3084216"^^ . + . + "http://biobanknetwork.telethon.it/Sample/View?sampleId="^^ . + . + "Habronattus courtship" . + . + . + . + "Orientations of Proteins in Membranes Database" . + . + . + . + "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115="^^ . + . + . + . + . + . + . + "genomics" . + "^\\d+$"^^ . + . + "false"^^ . + "01001"^^ . + "tol.webproj" . + "life science" . + . + . + . + . + "EDAM Format" . + . + . + "Christian-Alexander Dudek" . + . + "systems biology" . + "https://www.thaiclinicaltrials.org/show/$1"^^ . + . + . + "http://www.hgmd.cf.ac.uk/ac/gene.php?gene="^^ . + "FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Integrating data makes it possible to run sophisticated data mining queries that span domains of biological knowledge."^^ . + "mouse embryonic stem cell line" . + "http://purl.obolibrary.org/obo/UBERON_"^^ . + . + . + . + . + . + "phenotype" . + . + . + . + . + . + . + . + . + . + . + "762"^^ . + "GlycoPOST is a mass spectrometry data repository for glycomics and glycoproteomics. Users can release their \"raw/processed\" data via this site with a unique identifier number for the paper publication. Submission conditions are in accordance with the Minimum Information Required for a Glycomics Experiment (MIRAGE) guidelines."^^ . + . + . + "http://tolweb.org/$1"^^ . + "gene" . + . + "false"^^ . + . + "hmsl_id" . + . + "A controlled vocabulary to support the study of transcription in the developing human brain"^^ . + . + "https://reaxys.emolecules.com/cgi-bin/more?vid=$1"^^ . + "https://www.ncbi.nlm.nih.gov/nucest/"^^ . + "false"^^ . + "610"^^ . + . + . + . + . + . + . + . + "gene" . + . + "^(\\d{4}\\.\\d{2}\\.\\d{2}\\.)?\\d{6,8}(v\\d{1,3})?$"^^ . + "http://purl.obolibrary.org/obo/CHMO_$1"^^ . + . + . + "Soybean Trait Dictionary in template v5 - IITA - July 2015"^^ . + "genome" . + "life science" . + "https://www.ebi.ac.uk/chembl/entity/$1"^^ . + "chemistry" . + "University hospital Medical Information Network Clinical Trial Registry" . + . + . + "Basic Register of Thesauri, Ontologies & Classifications" . + . + . + . + "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$"^^ . + "life science" . + . + "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_"^^ . + . + . + . + . + "true"^^ . + . + . + "2842"^^ . + . + . + . + . + . + . + . + . + . + "preprints" . + . + . + . + "http://agroportal.lirmm.fr/ontologies/$1" . + "http://www.w3.org/2008/05/skos-xl#"^^ . + . + . + . . - "ecocore" . - "false"^^ . - "false"^^ . - . - . - "https://bioschemas.org/profiles/$1"^^ . - . - . - "Call for paper topics in EasyChair"^^ . - . - "http://purl.obolibrary.org/obo/UBERON_$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/CHEBI_"^^ . - "protein" . - "false"^^ . - . - "http://purl.obolibrary.org/obo/MP_$1"^^ . - . - . - . - . - . - "OSR0818"^^ . - . - "5688061"^^ . - . - "false"^^ . - . - . - . - . - "LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents."^^ . - . - . - . - . - "anatomy" . - . - . - "ontology" . - "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies."^^ . - . - "Ceri Van Slyke" . - "false"^^ . - "http://aps.unmc.edu/AP/database/query_output.php?ID="^^ . - . - . - . - . - "interaction" . - . - . - "http://purl.obolibrary.org/obo/APO_"^^ . - . - "mesh.vocab" . - . - "Ali Syed" . - . - . - . - . - . - . - "botany" . - "Bacterial Tyrosine Kinase Database" . - "^[A-Za-z0-9-]+$"^^ . - . - . - . - "^\\d{6}$"^^ . - "http://opm.phar.umich.edu/protein.php?pdbid="^^ . - "DUO is an ontology which represent data use conditions."^^ . - "Chicken Gene Nomenclature Consortium" . - "false"^^ . - . - . - . - . - . - "genome" . - . - . - . - . - . - "nb100-56351"^^ . - . - . - "^\\d+$"^^ . - "ontology and terminology" . - . - . - . - "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"^^ . - "General Standard for Food Additives Online Database" . - . - "ai10e-kctd13b"^^ . - "omiabis" . - "0007404"^^ . - . - "rna" . - . - . - . - . - . - . - "ecocyc" . - "cdt" . - . - "UniProtKB_VAR" . - . - "false"^^ . - . - "fbrf" . - "false"^^ . - . - . - . - . - "ocid" . - . - "^MGYA\\d+$"^^ . + . + . + . + "https://sitem.herts.ac.uk/aeru/bpdb/Reports/$1.htm"^^ . + . + "0000171"^^ . + "Oryzabase Strain" . + "gobpid" . + . + . + "Brazilian Registry of Clinical Trials" . + "corum" . + . + "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp="^^ . +_:Nd11f509979d24a498e9719a49b64bac0 "pbrooks@hcfa.gov" . + . + . + "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=$1"^^ . + "MESH_SUPPLEMENTAL_RECORD_UI" . + . + . + . + . + . + . + . + . + . + . +_:N2b6feb67a2df4a55a5abd72287a761f9 "helpdesk@cropontology-curationtool.org" . + . + "life science" . + "https://www.nextprot.org/term/$1"^^ . + . + . + "MmusDv" . + "false"^^ . + "^\\d+$"^^ . + "The Vaccine Ontology (VO) is a community-based biomedical ontology in the domain of vaccine and vaccination. VO aims to standardize vaccine types and annotations, integrate various vaccine data, and support computer-assisted reasoning. The VO supports basic vaccine R&D and clincal vaccine usage. VO is being developed as a community-based ontology with support and collaborations from the vaccine and bio-ontology communities."^^ . + "ontology" . + . + . + "brycemecum@gmail.com" . + . + "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1"^^ . + "metacyc.reaction" . + "^\\d+$"^^ . + . + "immunology" . + "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id="^^ . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + "http://classyfire.wishartlab.com/tax_nodes/C"^^ . + "165a"^^ . + . + . + . + "https://biopragmatics.github.io/providers/schem/"^^ . + . + . + "Physico-chemical methods and properties" . + "Cell line collections (Providers)"^^ . + . + "dal.alghamdi92@gmail.com" . + . + "4685"^^ . + . + . + "https://bioregistry.io/iceberg.cime:"^^ . + . + . + . + . + "Cell Biolabs cell line products" . + . + "^\\d+$"^^ . + . + . + . + "anatomy" . + . + "ontology" . + . + . + . + "computational biology" . + "^FB\\d{8}$"^^ . + . + "Search the world's most comprehensive index of full-text books."^^ . + "http://www.arachnoserver.org/toxincard.html?id="^^ . + "Brachiaria ontology" . + "^\\d{7}$"^^ . + . + . + "^[A-Za-z_0-9]+$"^^ . + "yoh@dartmouth.edu" . + "computational biology" . + . + . + . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references development stage information."^^ . + "https://www.uniprot.org/database/$1"^^ . + . + "^\\w{1,3}$"^^ . + . + . + "life science" . + . + "false"^^ . + "cooperl@oregonstate.edu" . + "http://addgene.org/$1"^^ . + . + . + "^\\d+$"^^ . + . + . + "false"^^ . + . + "ontology" . + . + "gene" . + . + "https://flybase.org/reports/FBrf$1"^^ . + . + "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + . + . + "A frontend to Wikidata"^^ . + _:Nbeca5cf2048d406d84b6c71368a16938 . + . + . + "Online Computer Library Center WorldCat" . + . + . + . + . + "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients."^^ . + . + . + . + "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to pathways."^^ . + . + "botany" . + "This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs"^^ . + . + . + . + "life science" . + . + . + "https://pubchem.ncbi.nlm.nih.gov/cell/$1"^^ . + . + . + . + . + . + . + "http://www-snorna.biotoul.fr/plus.php?id="^^ . + "^\\d{7}$"^^ . + . + . + "false"^^ . + "IMGT/PRIMER-DB" . + "hmdb" . + "Nicolas Le Novere" . + . + . + . + "TogoVar" . + "https://hdl.handle.net/hdl:20.500.12582/$1"^^ . + . + "life science" . + "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus="^^ . + "Presents the new fast tracks for clinical research and observational studies on INDIGENOUS PEOPLE AND TRADITIONAL COMMUNITIES and on NEGLECTED TROPICAL DISEASES (NTDs). Fast-track can reduce the normal approval period for clinical trials to less than 48 hours, if the documentation, information and any mandatory changes requested are provided by the registrant."^^ . + "genetics" . + "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID="^^ . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level)."^^ . + "environmental science" . + "protein" . + "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids."^^ . + . + "dna" . + . + . + "International repository of Adverse Outcome Pathways."^^ . + . + . + . + . + "nlx" . + . + . + "^([3-5][A-Z])\\w+[^A-Z][0-9]$"^^ . + "aeo" . + . + . + "Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output."^^ . + . + "^\\d{7}$"^^ . + "panther.node" . + . + . + "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects."^^ . + . + . + "Charles Ettensohn" . + "Gene Ontology Rules" . + "basic science" . + "p3db.site" . + . + . + "https://web.expasy.org/abcd/ABCD_"^^ . + . + "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1"^^ . + . + . + . + _:N1994ddc7e4024e5ea4c9252b93225408 . + "002368"^^ . + . + "The MGED Ontology (MO) provides terms for annotating all aspects of a microarray experiment from the design of the experiment and array layout, through to the preparation of the biological sample and the protocols used to hybridize the RNA and analyze the data."^^ . + . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions."^^ . + . + . + . + "CCDS13573.1"^^ . + . + . + "Compluyeast-2D-DB" . + . + . + "^\\d{7}$"^^ . + "knowledge and information systems" . + "life science" . + "protein" . + . + . + . + "chemical" . + "http://purl.obolibrary.org/obo/AEO_$1"^^ . + "^HBG\\d+$"^^ . + . + "Colorectal Cancer Atlas" . + . + . + . + . + "Daniel C. Berrios" . + . + . + . + "dc.terms" . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "Flora Phenotype Ontology" . + . + "neurology" . + "^\\d+$"^^ . + "fishbase" . + "0000001"^^ . + "ontology" . + . + "false"^^ . + . + . + "Molecular database for the identification of fungi" . + "Maria Taboada" . + . + . + . + "Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology."^^ . + . + . + "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons."^^ . + . + . + "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge."^^ . + "life science" . + . + . + . + "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1"^^ . + "131"^^ . + . + . + . + "G. Thomas Hayman" . + . + . + "small molecule" . + "pathway" . + "Transcription Factor Database" . + . + "obo" . + . + . + . + . + "protein" . + . + . + "obo" . + "UniProt" . + . + "false"^^ . + . + . + . + "doi" . + . + . + . + "http://cutdb.burnham.org/relation/show/"^^ . + "life science" . + "^XB\\-\\w+\\-\\d+$"^^ . + . + . + . + . + . + . + . + "false"^^ . + . + "ATC_code" . + "http://purl.obolibrary.org/obo/TTO_$1"^^ . + . + "ontology" . + . + "ccle" . + "false"^^ . + . + "epigenetics" . + . + "subject agnostic" . + "ANOVA"^^ . + "George Gkoutos" . + . + "AD834"^^ . + . + "http://purl.obolibrary.org/obo/MFO_$1"^^ . + . + . + . + "false"^^ . + . + . + "1"^^ . + "https://www.jax.org/strain/"^^ . + . + . + . + . + . + "0000983"^^ . + . + "Brendan MacLean" . + "medical informatics" . + . + . + . + . + . + "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"^^ . + "wbls" . + "proteomics" . + "http://noctua.geneontology.org/editor/graph/gomodel:$1"^^ . + "https://github.com/semanticchemistry/semanticchemistry" . + . + "0000109"^^ . + "obo" . + . + . + "has provider formatter" . + . + "false"^^ . + . + . + "MMSsINC is a database of commercially-available compounds for virtual screening and chemoinformatic applications. MMsINC contains over 4 million non-redundant chemical compounds in 3D formats."^^ . + "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$"^^ . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . + . + . + "https://mediadive.dsmz.de/medium/"^^ . + . + "fd8d0743-344a-4758-bb97-f8ad84a37357"^^ . + "PIRSF000100"^^ . + . + "OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources."^^ . + . + . + "image collection" . + . + "medicine" . + . + . + "pharmacology" . . - "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . - "false"^^ . - . - . - "gene" . - "^PPR\\d+$"^^ . - . - . - . - . - "^([3-5][A-Z])\\w+[^A-Z][0-9]$"^^ . - "false"^^ . - "false"^^ . - . - . - "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins."^^ . - "ala"^^ . - . - "selventa" . - "^\\d+$"^^ . - . - . - _:N8b7c2badcabc42edbc9571418c5a1d77 . - "ontology" . - . - "Human developmental anatomy, abstract version" . - . - "imex" . - "nmdc" . - "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=$1"^^ . - "medicine" . - "icd9" . - "FlyBase Gene" . - . - . - . - "developmental biology" . - . + "mex" . +_:N8d2f6d39f29d41e38c577baad90b69f9 "chebi-help@ebi.ac.uk" . + . + . + . + . + "http://arabidopsis.org/servlets/TairObject?accession=Gene:$1"^^ . + . + "developmental biology" . + . + "antibodies" . + "CATH superfamily" . + "The International Standard Book Number (ISBN) is for identifying printed books."^^ . + "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging"^^ . + . + . + . + . + . + "ontology" . + "false"^^ . + "^\\d+/.+$"^^ . + "false"^^ . + . + . + "http://purl.jp/bio/4/id/"^^ . + . + . + . + . + . + "Process Chemistry Ontology" . + "https://bartoc.org/en/node/$1"^^ . + . + . + . + . + . + . + . + "dna" . + . + . + . + . + . + "epio" . + "https://cropontology.org/rdf/CO_336:$1"^^ . + "dmba" . + . + "ontology" . + "psychology" . + . + . + . + "Harry Caufield" . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.bioontology.org/ontology/CSP/$1"^^ . + . + . + . + . + . + . + . + . + . + "metabolite" . + "https://bioregistry.io/bykdb:"^^ . + . + . + . + "Cell line databases/resources"^^ . + "http://purl.org/spar/pro/$1"^^ . + "The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions"^^ . + . + "PANTHER Family" . + "http://purl.obolibrary.org/obo/FBcv_$1"^^ . + . + . + "post-transcriptional modification" . + "cell biology" . + . + "Study inside StoreDB"^^ . + "Microarray experimental conditions" . + . + "1010"^^ . + . + . + . + . + . + . + "http://purl.org/spar/scoro/"^^ . + . + "false"^^ . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "Non-Coding RNA Ontology" . + . + . + . + . + "http://asrp.cgrb.oregonstate.edu/db/sRNAdisplay.html?ASRP_id="^^ . + . + "Online Mendelian Inheritance in Man is a catalog of human genes and genetic disorders."^^ . + "false"^^ . + "life science" . + . + "John Garavelli" . + "dwelter.ontologist@gmail.com" . + . + . + . + "false"^^ . + . + . + "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda)."^^ . + . + . + . + . + "ko00071"^^ . + . + "COG_Cluster" . + . + . + . + "false"^^ . + . + . + . + . + "false"^^ . + "https://biopragmatics.github.io/providers/dmba/$1"^^ . + "false"^^ . + . + "http://purl.obolibrary.org/obo/CIO_"^^ . + "DP00003"^^ . + . + "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships."^^ . + "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . + "0000011"^^ . + . + . + "embryo" . + "violinId" . + "ArrayExpress Platform" . + . + . + "cell lines" . + . + . + . + "Rice Genome Annotation Project" . + . + . + "https://bioregistry.io/hivreagentprogram:"^^ . + . + . + . + "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid="^^ . + . + . + "fbcv" . + "^((\\d+)|(\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+)|(\\d+\\.\\d+\\.\\d+\\.\\d+))$"^^ . + . + "Jeffrey Wong" . + "life science" . + . + "biomedical science" . + "ontology" . + "false"^^ . + . + "obo" . + . + . + . + . + . + . + . + . + . + "true"^^ . + . + "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=$1"^^ . + "http://wheat.pw.usda.gov/report?class=gene;name="^^ . + "mondo" . + . + . + "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR)."^^ . + . + "kcris" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/HANCESTRO_$1"^^ . + "Langua aLimentaria Thesaurus" . + . + "GO-Causal Activity Models (GO-CAMs) use a defined “grammar” for linking multiple GO annotations into larger models of biological function (such as “pathways”) in a semantically structured manner. GO-CAMs are created by expert biocurators from the GO Consortium, using the Noctua Curation Platform."^^ . + . + . + "false"^^ . + . + . + . + "dna" . + "https://www.diseasesdatabase.com/ddb$1.htm"^^ . + "false"^^ . + "3075966"^^ . + "true"^^ . + . + . + "https://www.ebi.ac.uk/arrayexpress/experiments/"^^ . + . + "An experimental run, served thrugh the ENA"^^ . + . + . + "^P\\d+$"^^ . + . + "NUI" . + . + . + . + . + . + . + "http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1"^^ . + "^\\d+$"^^ . + "data management" . + . + "nfdi4chem.ontocape" . +_:N28bf638d0ed04a62adc8f194345ca16b "info@wikidata.org" . + . + "protein" . + "International Classification of Diseases, 11th Revision" . + "Bryce Mecum" . + "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information."^^ . + . + . + . + "COL3A1"^^ . + "chemistry" . + . + . + . + "^PMC\\d+(\\.\\d+)?$"^^ . + "transposon insertion" . + . + . + . + . + . + "gene" . + "fcb" . + "4390079"^^ . + . + "false"^^ . + . + . + "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots."^^ . + "Identifier for a species on the noaa fisheries website"^^ . + . + "0000125"^^ . + "false"^^ . + . + . + . + . + . + "https://cordis.europa.eu/article/id/$1"^^ . + . + . + "life science" . + "feature"^^ . + . + . + . + . + "Datanator Gene" . + . + . + . + . + . + "allyson.lister@oerc.ox.ac.uk" . + . + "cognitive neuroscience" . + "^((ENS[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$"^^ . + . + . + . + "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=$1"^^ . + "KEGG Reaction Class" . + . + . + "false"^^ . + . + . + . + "structure" . + "anatomy" . + "icd10cm" . + . + . + "snap" . + . + . + "^\\d{7}$"^^ . + . + "false"^^ . + . + . + "gramene.protein" . + . + . + . + . + "mmsl" . + "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$"^^ . + "false"^^ . + . + . + . + . + . + . + "sasap" . + "OMIT" . + "false"^^ . + "http://purl.obolibrary.org/obo/DIDEO_"^^ . + "gene expression" . + . + "Data Science Ontology" . + . + "http://purl.obolibrary.org/obo/MPATH_"^^ . + "iclc" . + . + . + "funcbase.fly" . + . + . + "false"^^ . + . + "false"^^ . + . + . + . + . + "Jakob Voß" . + "http://www.ontobee.org/" . + . + . + "MESHCS" . + . + "gro-cpga" . + . + . + . + "https://biopragmatics.github.io/providers/pba/"^^ . + "Application ontology for entities related to insecticide resistance in mosquitos"^^ . +_:Nf56ce5accf304c63a0b83fc5a0e113c4 "custserv@nlm.nih.gov" . + . + . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/DERMO_$1"^^ . + . + . + . + . + "Gemina Symptom Ontology" . + . + "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line=$1"^^ . + . + . + . + "AB1925000"^^ . + . + "http://www.w3.org/ns/odrl/2/$1"^^ . + "Scientific Event Ontology" . + " Hendrik Borgelt" . + . + "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$1"^^ . + . + . + "http://purl.obolibrary.org/obo/PSO_"^^ . + . + . + "General Formal Ontology" . + . + . + "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. "^^ . + . + "0000003"^^ . + . + . + . + . + . + . + . + . + "gc_id" . + "GN_G03681DA"^^ . + "scdo" . + "vcell"^^ . + . + . + "false"^^ . + "^\\d{7}$"^^ . + . + . + "^\\d+$"^^ . + "A database for Triticeae and Avena references."^^ . + . + "1466"^^ . + . + "immunology" . + "^\\d+$"^^ . + "protein" . + . + "expression" . + "http://www.depod.bioss.uni-freiburg.de/showp.php?gene="^^ . + "CL0192"^^ . + . + . + "CIAT Common bean trait dictionary - version August 2014"^^ . + "civic.aid" . + . + "topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a"^^ . + . + . + . + "obo" . + . + . + "bel" . + "false"^^ . + . + . + . + . + . + . + . + . + "validatordb" . + . + . + . + . + . + "mi" . + . + . + . + . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/"^^ . + . + "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=$1"^^ . + "http://purl.obolibrary.org/obo/FBdv_"^^ . + "life science" . + . + "false"^^ . + . + "regulation" . + . + "https://bioregistry.io/schema/#$1"^^ . + . + "https://bbp.epfl.ch/nexus/web/studios/public/$1"^^ . + . + . + "http://uri.neuinfo.org/nif/nifstd/oen_"^^ . + . + "phenx" . + "Discourse Elements Ontology" . + . + . + . + "ArrayGroup"^^ . + . + "https://bioregistry.io/hovergen:"^^ . + . + "December 2019"^^ . + . + . + . + "wos" . + "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query="^^ . + . + . + "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases."^^ . + "ncithesaurus" . + "ideal" . + . + "5fde96bdc5f1aa9ff0cce18a"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + "pathway" . + . + "http://purl.obolibrary.org/obo/VBO_$1"^^ . +_:Nfdbadb6140024e31ae546873f2773b8a "loinc@regenstrief.org" . + . + . + . + . + "obo" . + "https://biosimulations.org/projects/"^^ . + . + "http://wodaklab.org/iRefWeb/interaction/show/"^^ . + . + . + "Ensembl Metazoa, the Ensembl database for accessing genome-scale data from non-vertebrate metazoa." . + . + . + "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref"^^ . + "dg.4503/01b048d0-e128-4cb0-94e9-b2d2cab7563d"^^ . "sequence" . - . - . - . - "false"^^ . - "false"^^ . - . - "radlex" . - "EGAS00000000001"^^ . - . - . - . - "CHEBI" . - "georgeta.bordea@u-bordeaux.fr" . - "^\\d+$"^^ . - "^\\w+$"^^ . - "false"^^ . - "0000124"^^ . - . - "Common Core Ontologies" . - "2966"^^ . - . - "ontology" . - "physics" . - . - . - . - . - . - . - . - . - "040000"^^ . - . - "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."^^ . - "francesco.vitali@ibba.cnr.it" . - "mice" . - . - "knowledge and information systems" . - . - . - "false"^^ . - "CAA71118.1"^^ . - . - "obo" . - "false"^^ . - "genomic sequence" . - "PMID" . - "CUT"^^ . - . - "https://www.ndexbio.org/viewer/networks/"^^ . - . - "Genome Aggregation Database" . - . - . - . - . - . - "Publons Researcher" . - "measurement" . - . - . - "^[a-z]{3}-[a-km-z0-9]{7}$"^^ . - . - . - "MOP is the molecular process ontology. It contains the molecular processes that underlie the name reaction ontology RXNO, for example cyclization, methylation and demethylation."^^ . - . - "jak@ucop.edu" . - "obo" . - "cell biology" . - . - "https://bioregistry.io/elm:"^^ . - "PF" . - "Uniprot ID" . - . - . - "false"^^ . - . - . - . - "http://bacmap.wishartlab.com/organisms/"^^ . - "C. elegans phenotype" . - "protein" . - "false"^^ . - "ICD10CM" . - . - . - . - . - . - . - "FungiDB" . - "https://www.re3data.org" . - . - "SugarBind" . - . - "http://purl.obolibrary.org/obo/TADS_"^^ . - "http://www.w3.org/2003/11/swrl#"^^ . - "galen" . - "https://comptox.epa.gov/dashboard/$1"^^ . - . - . - . - "Theoretical explanation of a purely spatial ontology supporting snapshot views of the world at successive instants of time, as part of a modular ontology of the dynamic features of reality."^^ . - "https://www.ncbi.nlm.nih.gov/probe/?term="^^ . - . - "610"^^ . - . - . - . - . - "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants."^^ . - "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present."^^ . - . - . - "http://scipion.i2pc.es/ontology/CRYOEM_"^^ . - "botany" . - . - . - . - . - . - . - . - "DDInter20"^^ . - . - . - . - "FAIRsharing Subject Ontology" . - "human" . - . - . - . - . - . - "life sciences" . - . - . - . - . - . - "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities."^^ . - "true"^^ . -_:Nc5c44dad323647e49e9b04c786ba774e "Eionet Helpdesk" . - . - "dna" . - . - . - "metabolites" . - . - . - . - "false"^^ . - "epo" . - . - . - . - "msigdb" . - "false"^^ . - . - . - . - "Abcam" . - "ontology" . - "disease" . - . - "ConoServer" . - . - . - "adriano.rutz@ik.me" . - "https://scicrunch.org/resolver/RRID:AGSC_"^^ . - "false"^^ . - "MRA-253"^^ . - . - . - "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1"^^ . - . - "developmental biology" . - . - . - "biochemistry" . - "AN0097748"^^ . - "D0001"^^ . - "Classification of Transcription Factors in Mammalia" . - "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1"^^ . - . - . - . - . - "to" . - . - . - . - . - "fluticasone"^^ . - . - . - "http://www.w3.org/ns/shex#$1"^^ . - "PharmacoDB Tissues" . - "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1"^^ . - "Diagnostic and Statistical Manual of Mental Disorders (4th Edition)" . - "http://hdl.handle.net/"^^ . - . - . - "http://en.wikipedia.org/wiki/"^^ . - . - "Emotion Ontology" . - . - . - "SpliceNest [1] is a web based graphical tool to explore gene structure, including alternative splicing, based on a mapping on the EST consensus sequences (contigs) from GeneNest [2] to the complete human genome."^^ . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - "obo" . - . - "https://w3id.org/nfdi4cat/voc4cat_"^^ . - . - "edong@umich.edu" . - . - . - . - . - . - . - . - . - "0000632"^^ . - . - "OrthoDB" . - . - "false"^^ . - . - . - . - . - "Allen Institute Ontologies" . - . - "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$"^^ . - . - "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . - . - "false"^^ . - . - . - . - "ontology" . - . - . - "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation."^^ . - . - . - "life science" . - . - . -_:N5067726a33d144dc8361a944c2151384 "Bert Van Nuffelen" . - . - . - . - "drug" . - . - . - _:N93983d18fcdf409b8daffd2813858a1c . - . - "ontology" . - . - . - . - . - "obo" . - "^\\d{7}$"^^ . - . - . - "kegg.disease" . - . - "http://purl.obolibrary.org/obo/NBO_$1"^^ . - . - . - . - "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation."^^ . + "gene" . + . + "biochemistry" . + "A comprehensive catalogue of animal genome size data where haploid DNA contents (C-values, in picograms) are currently available for 4972 species (3231 vertebrates and 1741 non-vertebrates) based on 6518 records from 669 published sources."^^ . + "GitHub is an online host of Git source code repositories."^^ . + . + . + . + . + "genomics" . + . + "false"^^ . + . + . + . + . + . + . + "ConoServer" . + . + . + . + "^\\w+$"^^ . + "agriculture" . + . + . + . + . + "ensembl.fungi" . + . + . + . + "gene" . + . + . + . + "KESTREL Ontology" . + "biominder" . + "miRBase pre-miRNA" . + . + . + "http://purl.obolibrary.org/obo/VSMO_$1"^^ . + . + . + . + "dinto" . + "BRENDA is a collection of enzyme functional data available to the scientific community. Data on enzyme function are extracted directly from the primary literature The database covers information on classification and nomenclature, reaction and specificity, functional parameters, occurrence, enzyme structure and stability, mutants and enzyme engineering, preparation and isolation, the application of enzymes, and ligand-related data."^^ . + "life science" . + "classification" . + . + "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets."^^ . + . + . + "data quality" . + . + "false"^^ . + . + "trichdb" . + . + . + . + . + . + . + . + . + "https://bioregistry.io/ppdb:"^^ . + . + . + "http://bioinfo.lifl.fr/norine/result.jsp?ID=$1"^^ . + "http://purl.obolibrary.org/obo/CDAO_"^^ . + . + . + "ontology" . + . + "false"^^ . + . + . + . + "false"^^ . + . + . + . + "pcl" . + . + "anatomy" . + . + . + "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."^^ . + . + . + "ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries"^^ . + "Imke Tammen" . + . + . + . + . + . + . + "civic.sid" . + "^\\d+$"^^ . + . + "dna" . + . + . + "^(imp|gen)\\d{5}$"^^ . + "false"^^ . . - . - . - "dsmz" . - . - "dna" . - . - . - . - . - . - . - "false"^^ . - "OntoCAPE is a large-scale ontology for the domain of Computer Aided Process Engineering (CAPE). Represented in a formal, machine-interpretable ontology language, OntoCAPE captures consensual knowledge of the process engineering domain in a generic way such that it can be reused and shared by groups of people and across software systems. On the basis of OntoCAPE, novel software support for various engineering activities can be developed; possible applications include the systematic management and retrieval of simulation models and design documents, electronic procurement of plant equipment, mathematical modeling, as well as the integration of design data from distributed sources."^^ . - . - . - "https://hdl.handle.net/hdl:20.500.12582/$1"^^ . - . - "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds."^^ . - "statistics" . - . - "Chris Grove" . - . - "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref$1"^^ . - "balhoff@renci.org" . - . - . - . - "http://oid-info.com/get/$1" . - . - . - . - . - . - "false"^^ . - "http://emmo.info/emmo/cif-core#$1"^^ . - . - . - . - . - . - . - . - "gard" . - . - . - . - . - "KNApSAcK provides information on metabolites and the\ntaxonomic class with which they are associated."^^ . - . - . - . - . - . - . - . - "epidemiology" . - . - . - . - . - . - "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data."^^ . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "hagr.gendr" . - "intact.molecule" . - . - . - . - "GCA_000155495.1"^^ . - . - . - . - "false"^^ . - "false"^^ . - . - . - . - "^\\d+$"^^ . - . - . - "ontology" . - . - . - . - . - . - . - "ontology" . - "obo" . - . - . - "http://purl.obolibrary.org/obo/BCO_$1"^^ . - "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1"^^ . - . - . - "ddanat" . - "Laboratory of Systems Pharmacology Compound" . - . - . - . - . - . - "https://www.ebi.ac.uk/metabolights/$1"^^ . - "co_367" . - _:N0832d90b503b48f08260e88fa8495d79 . - "caro" . - . - "sprint" . - . - . - . - . - "^[0-9]*$"^^ . + "Christine Pourcel" . + "Environment Ontology" . + . + . + . + "false"^^ . + . + . + . + . + "ATCC number" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "ASTD" . + "https://pdc.cancer.gov/pdc/study/"^^ . + "life science" . + "linguistics" . + "^GCST\\d{6}\\d*$"^^ . + . + "protein" . + . + . + "false"^^ . + . + . + . + . + . + . + . + "http://pax-db.org/#!species/"^^ . + . + . + "developmental biology" . + "JRBC Cell Bank" . + . + "g.gkoutos@bham.ac.uk" . + . + "https://bioregistry.io/chemspider:"^^ . + . + . + "conoserver" . + . + . + . + "plant" . + . + "RO_proposed_relation" . + . + "Integrated Resource for Domestic Dog" . + . + . + "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_"^^ . + . + . + . + . + . + "rexo" . + . + . + . + . + . + "G protein-coupled receptor database" . + . + . + . + . + "0007404"^^ . + . + "he Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles."^^ . + . + "http://bioinfo2.weizmann.ac.il/cgi-bin/genenote/GN_results.pl?keyword_type=2_gc_id&keyword=$1&data_type=norm2&results=yes"^^ . + . + . + . + . + . + "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra."^^ . + . + "https://www.biorxiv.org/content/10.1101/$1"^^ . + . + . + "subject agnostic" . + . + . + . + "http://www.pathwaycommons.org/pc/record2.do?id=$1"^^ . + . + "Open Biological and Biomedical Ontologies" . + . + . + "false"^^ . + "3DMET is a database collecting three-dimensional structures of natural metabolites."^^ . + "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . + . + "C6155"^^ . + "ontology" . + . + "cellopub" . + . + "phenotype" . + . + . + "Maize gross anatomy"^^ . + . + "^\\d+$"^^ . + "ehdaa2" . + . + . + . + "https://units-of-measurement.org/"^^ . + . + . + "An ontology of phenotypes covering microbes"^^ . + "false"^^ . + . + "metabolomics" . + "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=$1"^^ . + "http://purl.obolibrary.org/obo/ICO_$1"^^ . + "http://www.treefam.org/family/"^^ . + . + "http://www.ncbi.nlm.nih.gov/clinvar/$1"^^ . + "caripark@iastate.edu" . + . + . + "EGAD00000000001"^^ . + "true"^^ . + . + . + "DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) is a foundational ontology developed as part of the WonderWeb Foundational Ontologies Library (WFOL). The development of this library has been guided by the need of a reliable set of foundational ontologies that can serve as 1) astarting point for building other ontologies, 2) a reference point for easy and rigorous comparisons among different ontological approaches, and 3) a rigorous basis for analyzing, harmonizing and integrating existing ontologies and metadata standards (by manually mapping them into some general module(s) in the library). DOLCE is the first module of WFOL and it is not a candidate for a universal standard ontology. Rather, it is intended as a starting point for comparing and elucidating the relationships with the other modules of the library, and also for clarifying the hidden assumptions underlying existing ontologies or linguistic resources such as WordNet. As reflected by its acronym, DOLCE has a clear cognitive bias, in the sense that it aims at capturing the ontological categories underlying natural language and human commonsense. DOLCE is an ontology that focuses on particulars in the sense that its domain of discourse is restricted to them. The project is complete, though the ontology remains available for use."^^ . + . + . + "pav" . + . + . + "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins."^^ . + . + . + . + "true"^^ . + . + . + . + "^[1-9]\\d*$"^^ . + . + "cmecs" . + "ctri" . + "gene expression" . + . + . + "traditional medicine" . + . + "false"^^ . + "genomics" . + . + "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references phosphoprotein information."^^ . + . + . + "Informed Consent Ontology" . + . + . + . + . + "^(Gi|Gc)\\d+$"^^ . + . + . + . + "https://www.ebi.ac.uk/metagenomics/projects/$1"^^ . + . + "ab-1-ha"^^ . + "biomedical science" . + "biomedical science" . + "https://glygen.org/glycan/"^^ . + "do" . + . + . + . + "https://bioregistry.io/cldb:"^^ . + . + . + . + . + . + . + . + . + "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)." . + "^(5?)\\d{7}$"^^ . + . + "Pearl millet ontology" . + . + . + . + . + . + . + "^\\d+$"^^ . + "px" . + "Q2207226"^^ . + "false"^^ . + . + . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id="^^ . + "Minimal Information About Anatomy ontology" . + . + "bioregistry.schema" . + . + . + . + . + . + . + . + . + "SLCTR/2023/010"^^ . + . + . + . + . + . + . + . + . + "biomedical science" . + "protein" . + . + "false"^^ . + . + . + "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q="^^ . + "bel" . + . + . + "Hymenoptera Anatomy Ontology" . + "AC119"^^ . + . + . + "false"^^ . + . + . + . + . + . + "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." . + "interaction" . + "true"^^ . + "protein" . + "fbbt" . + . + "https://www.nextprot.org/term/FA-$1"^^ . + . + "quantitative genetics" . + "Ontology of Host-Microbiome Interactions" . + . + "Sharkipedia Trait" . + "false"^^ . + . + . + . + . + . + . + "orcid" . + . + . + "http://purl.obolibrary.org/obo/GENEPIO_$1"^^ . + "Uniprot ID" . + . + . + "botany" . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + . + "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1"^^ . + "obo" . + . + "0045310"^^ . + "ev" . + . + . + . + . + . + "NIH RePORTER" . + "https://www.scopus.com/authid/detail.uri?authorId=$1"^^ . + . + . + "159787"^^ . + "https://w3id.org/oc/corpus/"^^ . + "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id="^^ . + "^[A-Z0-9]+$"^^ . + "DepMap Cell Lines" . + "genomics" . + "insdc.run" . + . + . + . + . + "model" . + "false"^^ . + "tred" . + . + . + "physiology" . + . + "http://purl.obolibrary.org/obo/FIDEO_$1"^^ . + "false"^^ . + "Mosquito insecticide resistance" . + . + . + . + . + "^PA\\w+$"^^ . + . + . + . + . + "https://www.arraymap.org/pgx:$1"^^ . + . + . + "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id="^^ . + . + . + . + . + "IP" . + "agriculture" . + "^\\d{7}$"^^ . + "ontology" . + . + . + . + "https://bioregistry.io/bacmap.map:"^^ . + "Pharmacogene Variation Consortium" . + . + . + "obo" . + "ontology" . + . + . + . + "genome" . + . + "col" . + . + "Carsten Linder" . + "http://purl.obolibrary.org/obo/COVIDO_"^^ . + "proteomics" . + "false"^^ . + . + "michel.dumontier@gmail.com" . + . + . + . + . + . + . + . + . + . + "gexo" . + "clinvar" . + . + . + . + "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#"^^ . + . + . + . + "false"^^ . + . + "ICEberg integrative and mobilizable element" . + "^[0-9]+(LR)?$"^^ . + "The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms."^^ . + . + "3618"^^ . + . + . + . + "https://biopragmatics.github.io/providers/cvx/$1"^^ . + . + . + . + "protein" . + . + . + . + . + . + . + "life science" . + "interaction" . + . + . + . + . + "dhowe@zfin.org" . + "obo" . + . + . + . + . + . + "obo" . + . + . + "andreas.ruepp@helmholtz-muenchen.de" . + "Clytia hemisphaerica Development and Anatomy Ontology" . + "AllSomeInterpretation"^^ . + . + "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID="^^ . + "^\\w+(\\.\\d+)$"^^ . + . + "ontology" . + "GENO is an OWL model of genotypes, their more fundamental sequence components, and links to related biological and experimental entities. At present many parts of the model are exploratory and set to undergo refactoring. In addition, many classes and properties have GENO URIs but are place holders for classes that will be imported from an external ontology (e.g. SO, ChEBI, OBI, etc). Furthermore, ongoing work will implement a model of genotype-to-phenotype associations. This will support description of asserted and inferred relationships between a genotypes, phenotypes, and environments, and the evidence/provenance behind these associations. \n\nDocumentation is under development as well, and for now a slidedeck is available at http://www.slideshare.net/mhb120/brush-icbo-2013"^^ . + . + . + "kegg.metagenome" . + . + . + . + . + "https://rpcec.sld.cu/en/trials/"^^ . + . + . + . + "interaction" . + "^\\d+$"^^ . + . + "MolMeDB" . + "subject agnostic" . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1"^^ . + "exac.transcript" . + . + . + "^\\D{4}\\d{6}(\\-\\D{2})?$"^^ . + "1a24"^^ . + . + "nlx.br" . + "0278"^^ . + "The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML."^^ . + "^\\d+$"^^ . + . + . + . + "biomedical science" . + "Sheeba Samuel" . + . + . + . + . + . + . + . + . + . + . + . + . + "0000111"^^ . + . + "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers."^^ . + . + "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype."^^ . + . + . + . + . + "life science" . + "Pathway Commons" . + . + "ERR436051"^^ . + . + "United States Patent and Trademark Office" . + . + . + . + "cell biology" . + . + "true"^^ . + "https://easychair.org/cfp/topic.cgi?tid="^^ . + . + . + "^CE\\d{5}$"^^ . + "National Microbiome Data Collaborative" . + "false"^^ . + . + "sfam" . + . + "false"^^ . + "addiehl@buffalo.edu" . + . + "http://vocabularies.bridgedb.org/ops#$1"^^ . + "046-19"^^ . + "https://odc-sci.org/data/"^^ . + . + . + "false"^^ . + . + "false"^^ . + . + "Trushar Shah" . + . + "^\\d+$"^^ . + . + "false"^^ . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID="^^ . + "fernanda.dorea@sva.se" . + . + . + . + "Insect Resistance Ontology" . + . + . + "KEGG ENZYME is an implementation of the Enzyme Nomenclature (EC number system) produced by the IUBMB/IUPAC Biochemical Nomenclature Committee. KEGG ENZYME is based on the ExplorEnz database at Trinity College Dublin, and is maintained in the KEGG relational database with additional annotation of reaction hierarchy and sequence data links."^^ . + "https://civicdb.org/links/sources/"^^ . + . + "grin.taxonomy" . + "https://goldbook.iupac.org/terms/view/"^^ . + "http://purl.obolibrary.org/obo/ZFA_"^^ . + . + . + "http://www.bmrb.wisc.edu/data_library/generate_summary.php?bmrbId="^^ . + . + "tgma" . + . + . + . + "lncipedia" . + "YOR172W_571.0"^^ . + "loinc" . + "conferences" . + "https://www.inaturalist.org/observations/"^^ . + . + "false"^^ . + . + . + . + . + . + . + "C. elegans phenotype" . + "Grant"^^ . + . + "aro" . + "CIP - potato ontology - december 2018"^^ . + "false"^^ . + "^\\d+$"^^ . + . + _:N1603a0611b164486bead2cd509e1f9d8 . + . + . + . + . + "http://purl.obolibrary.org/obo/OOSTT_"^^ . + . + . + "InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"^^ . + "giant.plankton@gmail.com" . + "Pazar Transcription Factor" . + . + . + . + . + "^\\d+$"^^ . + "90801"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with bacterial genomes."^^ . + . + "SDAP is a Web server that integrates a database of allergenic proteins with various bioinformatics tools for performing structural studies related to allergens and characterization of their epitopes."^^ . + "cido" . + . + "EC" . + . + . + . + . + "The Bloomington Drosophila Stock Center collects, maintains and distributes Drosophila melanogaster strains for research."^^ . + "niaest" . + "http://purl.uniprot.org/annotation/VAR_"^^ . + . + . + . + "RNA Modification Database" . + . + "000410"^^ . + "obo" . + . + "http://www.cellsignal.com/products/$1.html"^^ . + . + "false"^^ . + . + "^\\d+$"^^ . + "ontology" . + . + "false"^^ . + . + . + "gene expression" . + . + "personalized medicine" . + . + . + "epidemiology" . + . + "ITMCTR2023000002"^^ . + . + . + . + . + "protcom" . + . + . + . + . + . + . + . + . + . + . + "3"^^ . + "^2\\d{4}$"^^ . + . + . + . + "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond."^^ . + . + "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id="^^ . + . + . + . +_:Nd4c2dc2769a94670873d7070c483e69c "NLM Customer Service" . + . + "ontology" . + . + . + . + "ecyano.experiment" . + . + . + "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:$1"^^ . + . + . + . + "anatomy" . + "false"^^ . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "MSMEG_3769"^^ . + . + . + . + . + . + . + "0000210"^^ . + "life science" . + "ontology" . + . + "http://aps.unmc.edu/AP/database/query_output.php?ID=$1"^^ . + "Conferences in EasyChair"^^ . + . + "PTM" . + . + "false"^^ . + . + . + . + "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId="^^ . + . + . + . + . + . + . + "biomedical science" . + . + "All geographical features in GeoNames are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes."^^ . + . + . + . + "DrugBank Target v4" . + . + . + "subject agnostic" . + "nci.drug" . + . + "structure" . + . + . + "taxonomy" . + "OriDB Schizosaccharomyces" . + . + . + "pathway" . + "0221"^^ . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information."^^ . + . + . + . + . + . + . + "biology" . + . + . + . + . + . + . + "false"^^ . + . + . + "false"^^ . + . + . + "dna" . + . + "http://purl.obolibrary.org/obo/MI_$1"^^ . + . + . + . + . + . + . + . + "false"^^ . + "http://purl.org/ontology/bibo/$1"^^ . + "false"^^ . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid="^^ . + . + "S6"^^ . + . + . + "false"^^ . + . + . + . + "biomedical science" . + . + . + . + "FBgn0011293"^^ . + "https://bioregistry.io/dragondb.locus:"^^ . + . + . + . + . + . + "EHDAA2_RETIRED" . + . + . + . + . + . + . + "Integrated Genomic Resources of human Cell Lines for Identification" . + . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."^^ . + "Workspace (Git repository) for modeling projects managed by the Physiome Model Repository"^^ . + . + "ontology" . + . + . + . + "The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate quantum mechanics (QM) calculations of molecular structures, energies and properties. These data can serve as benchmarks for testing and parameterization of other computational methods."^^ . "false"^^ . - . - "SR0000178"^^ . - "Schema.org is a collaborative, community activity with a mission to create, maintain, and promote schemas for structured data on the Internet, on web pages, in email messages, and beyond."^^ . - . - "O08709"^^ . - . - "http://www.cellsignal.com/reference/pathway/$1.html"^^ . - "publishing" . - . - . - . -_:Nac3b925206fd4665aad57e5e11afb65a "American Medical Association" . - . - . - "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$1"^^ . - . - . - . - . - . - "ontology" . - . - . - "spdx" . - "https://www.ncbi.nlm.nih.gov/probe/?term=$1"^^ . - . - . - . - . - . - . - . - . - "rna" . - . - . - "clustering" . - . - . - . - . - . - "^CTRI/\\d{4}/\\d{2}/\\d+$"^^ . - . - "GR:0080039"^^ . - . - . - "https://aopwiki.org/relationships/"^^ . - . - . - . - "DOULIX lab-tested standard biological parts, in this case, full length constructs."^^ . - . - "phenxtoolkit" . - "^\\w{3}\\d+$"^^ . - "chemistry" . - . - . - . - . - . - . - "ontology" . - "http://trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/whole_detail.cgi?SID=$1"^^ . - "neurobiology" . - . - . - . - "Ax1"^^ . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "^P\\d{5}$"^^ . - "Mike Cherry" . - . - . - . - "0000690"^^ . - "evolutionary biology" . - . - . - "mesh.2013" . - . - "Lin Huang" . - . - . - . - . - . - . - "https://disprot.org/$1"^^ . - . - "medicine" . - . - "false"^^ . - "https://biopragmatics.github.io/providers/uniprot.ptm/"^^ . - "radiology" . - . - "NIHhESC-10-0083"^^ . - "false"^^ . - . - "3DMET is a database collecting three-dimensional structures of natural metabolites."^^ . - . - . - . - "Long Term Ecological Research Controlled Vocabulary" . - . - . - . - . - . - . - . - "SCV000151292"^^ . - "true"^^ . - "obo" . - . - "adrien.coulet@loria.fr" . - . - . - "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications."^^ . - . - . - . - "http://www.treefam.org/family/"^^ . - "ero" . - . - "false"^^ . - "phenotypes" . - . - . - "International repository of Adverse Outcome Pathways."^^ . - "^EG\\d+$"^^ . - . - . - "false"^^ . - . - . - . - "https://bioregistry.io/medlineplus:"^^ . - "EDAM Topic" . - . - . - . - . - "http://purl.obolibrary.org/obo/XLMOD_$1"^^ . - . - . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_br_"^^ . - "rat" . - "false"^^ . - "false"^^ . - "rsk00410"^^ . - "has local unique identifier pattern" . - . - . - . - . - "https://bioregistry.io/lgic:"^^ . - . - . - . - . - "occupational medicine" . - "true"^^ . - . - . - . - . - . - . - . - "life science" . - . - . - . - . - "The European Collection of Authenticated Cell Cultures (ECACC) is one of four Culture Collections of Public Health England. We supply authenticated and quality controlled cell lines, nucleic acids and induced Pluripotent Stem Cells (iPSCs)."^^ . - . - . - . - . - "daniel.gautheret@u-psud.fr" . - . - . - . - "false"^^ . - "Clare Pilgrim" . - . - . - "dna" . - . - "http://purl.obolibrary.org/obo/NCBITaxon_"^^ . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/UO_$1"^^ . - . - "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."^^ . - . - "0100010"^^ . - "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI."^^ . - "0000027"^^ . - "Ambystoma Genetic Stock Center" . - . - . - . - . - "NIF Standard Ontology: Molecules" . - . - "https://glyconavi.org/hub/?id=$1"^^ . - . - . - . - . - . - . - . - . - . - "biology" . - . - . - "This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins."^^ . - . - "H-InvDb Locus" . - "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials."^^ . - . - . - . - . - "ssbd.project" . - "https://gold.jgi.doe.gov/resolver?id=$1"^^ . - "ENCSR163RYW"^^ . - . - "proteomics" . - "Michael Baudis" . - . - . - . - . - "phenotype" . - . - . - . - . - . - "David Wishart" . - . - "^[a-zA-Z0-9-_]+$"^^ . - . - "Resource for the community to store, retrieve, search, reference, and reuse CellML models."^^ . - . - _:N9c2d149a8169411dafddcffb9f24523d . - . - . - . - . - . - . - . - "0002350"^^ . - . - . - . - "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers."^^ . - "botany" . - . - "Ontology of Biological and Clinical Statistics" . - . - . - "obo" . - "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."^^ . - . - . + . + . + "false"^^ . + "cheminformatics" . + "https://www.nextprot.org/db/entry/"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + "Scopus Publication" . + "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease."^^ . + . + "BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research."^^ . + . + "https://bioregistry.io/registry/$1"^^ . + . + "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas="^^ . + "http://eugenes.org:7072/.bin/fbidq.html?$1"^^ . + "biomedical science" . + "https://stemcells.nindsgenetics.org?line="^^ . + . + . + . + "^DDB_G\\d+$"^^ . + . + "archdb" . + . + . + "false"^^ . + . + . + . + "URGI Contact" . + . + "https://www.worldwildlife.org/ecoregions/$1"^^ . + . + . + "classification" . + . + "genomics" . + "false"^^ . + "27106865"^^ . + . + . + . + . + . + "chebi" . + . + . + . + . + . + "glycomics" . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/birnlex_$1"^^ . + . + "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1"^^ . + . + . + "The Variation Ontology (VariO) is an ontology for the standardized, systematic description of effects, consequences and mechanisms of variations. It describes the effects of variations at the DNA, RNA and/or protein level."^^ . + "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)"^^ . + "http://purl.obolibrary.org/obo/PLANP_"^^ . + . + . + "https://n2t.net/$1:"^^ . + . +_:N7c9c314d0f544ed4a266982796905960 "CTCAE Help" . + "functional genomics" . + . + . + "adcad" . + "dsm-v" . + . + . + . + . + . + "subject agnostic" . + "csp" . + . + "MIPModDB" . + . + . + . + . + . + . + . + "D00001"^^ . + "http://purl.obolibrary.org/obo/HAO_"^^ . + . + . + . + "life science" . + . + "0440"^^ . +_:N8723ec61d20e406aa41e6b7e1d2ee765 "yingqin@rti.org" . + . + . + "data management" . + . + . + "pennsieve" . + . + "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1"^^ . + . + . + . + "An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies."^^ . + . + "rbk" . + . + . + . + "siiraa@umich.edu" . + "RISM Online" . + . + . + . + . + "false"^^ . + . + . + . + "ontology" . + "expression" . + . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_CIME.php?cime_id=$1_CIME"^^ . + . + "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1"^^ . + . + . + . + . + . + "classyfire" . + . + "genome" . + . + . + "ontology" . + . + . + . + . + "false"^^ . + . + . + . + . + "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID="^^ . + "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1"^^ . + . + . + . + . + "e999"^^ . + "protein" . + "http://purl.obolibrary.org/obo/CMO_$1"^^ . + . + "Gramene Growth Stage Ontology" . + . + . + . + . + "EDAM Operation" . + "http://sabiork.h-its.org/reacdetails.jsp?reactid="^^ . + "metabolomics" . + . + . + "oai:cwi.nl:4725"^^ . + . + . + "^M[0-9]{4,}$"^^ . + . + . + . + . + . + . + . + . + . + . + "anatomy" . + . + "nbo" . + . + "cardiology" . + . + . + . + . + . + . + "00000180"^^ . + . + "data analysis" . + . + "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants."^^ . + . + . + . . - "obo" . - . - "^GCA_[0-9]{9}(\\.[0-9]+)?$"^^ . - . - "agronomy" . - . - . - . - . - . - "false"^^ . - "environmental science" . - . - "Tick Cell Biobank" . - . - "ontology" . - "wosuid" . - . - . - . - "ARBA00000001"^^ . - "sphn" . - "genome" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/ONE_$1"^^ . - "pathway" . - . - "https://medlineplus.gov/genetics/condition/"^^ . - "rpillich@ucsd.edu" . - "MMSL_CODE" . - . - "false"^^ . - . - . - . - "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id="^^ . - . - "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc."^^ . - . - "^\\d{7}$"^^ . - . - "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=$1"^^ . - "true"^^ . - . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID="^^ . - . - . - "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects."^^ . - . - "^[A-Z]+[0-9]+$"^^ . - . - . - . - . - "SBML RDF Vocabulary" . - "https://e-cyanobacterium.org/bcs/rule/"^^ . - "^[0-9]+$"^^ . - . - . - "nicole@tislab.org" . - "cnrs" . - . - "anatomy" . - . - . - "biomagresbank" . - . - "data management" . - . - _:Nfb9e4277d5bc487682344f95beae248e . - . - "domain" . - "https://metazoa.ensembl.org/id/$1"^^ . - . - . - . - . - "life science" . - . - . - "false"^^ . - . - . - "6472"^^ . - "false"^^ . - "dso" . - . + "handle" . + "repository" . + "life science" . + "anatomy" . + . + "https://rnaloops.cs.put.poznan.pl/search/details/$1"^^ . + . + . + . + . + . + . + . + "National Drug Data File" . + . + . + . + . + "false"^^ . + "false"^^ . + "dandi" . + "https://glygen.org/glycan/$1"^^ . + "617102"^^ . + . + "Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease."^^ . + "Assembly" . + "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."^^ . . - "false"^^ . - . - . - "DP00003"^^ . - "^TF\\w+$"^^ . - . - "eu89h" . - "An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians."^^ . - . - "The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature."^^ . - . - . - "http://dictybase.org/gene/$1"^^ . - "Brachiaria (forages) ontology TD v5 - Version Oct 2016"^^ . - . - . - "merops.inhibitor" . - . - . - "vmhreaction" . - . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - "^\\w+$"^^ . - . - . - . - "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources."^^ . - . - . - "A controlled vocabulary to describe phenotypic traits in plants."^^ . - . - "^\\d{7}$"^^ . - . - . - "Mouse Genome Informatics" . - . - . - . - . - . - . - "eaglei" . - . - . - . - . - . - "^1\\d{4}-\\d{3}$"^^ . - "transportdb" . - "false"^^ . - . - . - "^\\d+$"^^ . - "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID="^^ . - "Vaccine Adjuvant Compendium" . - . - . - . - "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID="^^ . - . - "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins."^^ . - "^\\d+$"^^ . - "Selventa legacy disease namespace used with the Biological Expression Language"^^ . - "Mouse Developmental Stages" . - "ontology" . - "false"^^ . - . - . - . - "obo" . - . - . - . - . - . - "social science" . - "taxonomy" . - "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations."^^ . - . - . - "https://glygen.org/glycan/"^^ . - . - . - . - "geodesy" . - . - "ATL98012"^^ . - . - "KEGG Pathways Database" . - "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. "^^ . - . - . - . - "rrid" . - "Ontology for simulation, modelling, and optimization" . - . - . - "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . - . - . - "NPC139585"^^ . - . - . - . - . - . - "disease" . - "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"^^ . - . - . - . - "drug discovery" . - . - "Alzheimer's Disease Ontology" . - "aop" . - . - . - . - . - . - . - . - "PK-DB" . - . - "436605"^^ . + . + . + . + . + "sequence" . + . + . + . + . + "Virus-HostDB" . + . + "15000"^^ . + . + "schemaorg" . + . + "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid="^^ . + "wd" . + . + "http://purl.obolibrary.org/obo/MRO_$1"^^ . + . + . + . + "https://bioregistry.io/imgt.primerdb:"^^ . + . + . + "ucum" . + "false"^^ . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_br_"^^ . + "http://www.fao.org/gsfaonline/additives/details.html?id="^^ . + . + "gecko" . + "http://gmd.mpimp-golm.mpg.de/Spectrums/$1"^^ . + . + . + . + "Deutsche Sammlung von Mikroorganismen und Zellkulturen" . + . + "Bob Thacker" . + . + . + . + . + "structure" . + . + . + . + "https://www.storedb.org/store_v3/study.jsp?studyId=$1"^^ . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID="^^ . + . + . + "Physical Medicine and Rehabilitation" . + "interaction" . + . + "structure" . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_cell_"^^ . + . + . + . +_:N2a6598dcac82449284e147289aeb0d56 "Crop Ontology Helpdesk" . + . + . + "REACT" . + . "The SENSO ontology is designed to provide classification terms for labeling sensitive data for data archival and sharing."^^ . - . - . - . - . - "ontology" . - . - . - . - "false"^^ . - . - . - . - "dna" . - . - . - "Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank."^^ . - . - . - "http://clipserve.clip.ubc.ca/topfind/proteins/"^^ . - . - . - "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+"^^ . - . - "genome" . - "PTN000000026"^^ . - . - "https://www.checklistbank.org/dataset/$1"^^ . - . - . - . - "https://www.ncbi.nlm.nih.gov/cdd?term=$1"^^ . - . - . - "LIPID_MAPS_class" . - . - . - "http://purl.obolibrary.org/obo/VSMO_$1"^^ . - "ontology" . - "HGVST1828"^^ . - . - . - . - . - . - "The Candida Genome Database (CGD) provides access to genomic sequence data and manually curated functional information about genes and proteins of the human pathogen Candida albicans. It collects gene names and aliases, and assigns gene ontology terms to describe the molecular function, biological process, and subcellular localization of gene products."^^ . - "false"^^ . - "VB.Ob.3736.GRSM125"^^ . - . - . - "Clinical Trials Information System" . - "ontology" . - "aeon" . - . - . - "door" . - . - . - "http://phenol-explorer.eu/foods/"^^ . - . - "one" . - . - . - . - "https://cgap.nci.nih.gov/Pathways/BioCarta/"^^ . - "^([hm]\\_)?\\w+Pathway$"^^ . - . - . - "https://www.ebi.ac.uk/metagenomics/projects/"^^ . - . - "UniProt Cross-ref database" . - . - . - "false"^^ . - "BacDive" . - "ehdaa" . - . - . - . - . - "false"^^ . - "2GC4"^^ . - . - . - . - "gene" . - . - . - "http://purl.obolibrary.org/obo/PPO_$1"^^ . - "NLXBR" . - . - . - "CutDB" . - _:N990a89615e4241f58815382f39a098e3 . - "https://vocab.org/vann/"^^ . - . - "An ontology of minimum information regarding potential drug-drug interaction information."^^ . - "http://purl.obolibrary.org/obo/BTO_"^^ . - "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo="^^ . - . - . - . - . - . - . - "life science" . - . - "MmusDv" . - "The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest.\n\nCCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). Accordingly, CCO classes and relations are heavily constrained by the BFO framework, from which it inherits much of its basic semantic relationships."^^ . - "ontology" . - . - . - . - "false"^^ . - . - . - "dlxb" . - . - "obo" . - "structure" . - . - . - "0000041"^^ . - "genome" . - "Martin Ramirez" . - . - . - . - . - "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1"^^ . - "false"^^ . - "false"^^ . - . - . - "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don’t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations — libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver."^^ . - "https://meshb.nlm.nih.gov/record/ui?ui=$1"^^ . - . - . - . - . - . - . - "http://elm.eu.org/elms/elmPages/$1.html"^^ . - "miRBase mature miRNA" . - . - "https://w3id.org/semapv/vocab/"^^ . - "business administration" . - "false"^^ . - . - . - . - "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . - "false"^^ . - . - "lincs.protein" . - . - . - . - . - "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."^^ . - . - . - "false"^^ . - "MicroScope is an integrative resource that supports systematic and efficient revision of microbial genome annotation, data management and comparative analysis."^^ . - "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."^^ . + . + "http://purl.obolibrary.org/obo/MOP_"^^ . + . + . + . + . + "https://www.scopus.com/authid/detail.uri?authorId="^^ . + . + "true"^^ . + "eugenes@iubio.bio.indiana.edu" . + . + "ontology" . + . + . + . + . + . + . + . + . + . + "BARC-013845-01256"^^ . + . + "0101963"^^ . + "http://purl.obolibrary.org/obo/GOREL_$1"^^ . + . + . + "storedb" . + "gene prediction" . + "mmo" . + "https://www.perkinelmer.com/searchresult?searchName=$1"^^ . + "false"^^ . + "ontology" . + "cordis.project" . + . + . + . + . + . "epso" . - . - . - "false"^^ . - . - . - . - . - . - . - . - "ontology" . - . - . - . - . - . - "genome" . - . + . + "false"^^ . + . + . + . + . + "5688061"^^ . + "TTD Target" . + "obo" . +_:N3d1b2d44321449298ccf2afdf5ddcbea "Crop Ontology Helpdesk" . + "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . + . + "National Uniform Claim Committee Taxonomy" . + . + . + . + "Minimal Information about any Sequence" . + . + "genotyping" . + "http://purl.obolibrary.org/obo/SBO_$1"^^ . + "Ensembl" . + . + "http://mods.rna.albany.edu/mods/modifications/view/"^^ . + . + "http://scipion.i2pc.es/ontology/CRYOEM_$1"^^ . + "The Functional Single Nucleotide Polymorphism (F-SNP) database integrates information obtained from databases about the functional effects of SNPs. These effects are predicted and indicated at the splicing, transcriptional, translational and post-translational level. In particular, users can retrieve SNPs that disrupt genomic regions known to be functional, including splice sites and transcriptional regulatory regions. Users can also identify non-synonymous SNPs that may have deleterious effects on protein structure or function, interfere with protein translation or impede post-translational modification."^^ . + . +_:N1531bf92c67e42119f18e5fedbef62f9 "Plant Ontology Administrators" . + "http://www.arachnoserver.org/toxincard.html?id=$1"^^ . + . + "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to gene information."^^ . + . + "^\\d+$"^^ . + . + "100E"^^ . + . + "https://rism.online/"^^ . + "http://purl.obolibrary.org/obo/IDO_"^^ . + . + "g.gkoutos@gmail.com" . + . + . + . + "true"^^ . + . + . + "^EMD-\\d{4,5}$"^^ . + "MagnitudeValueType"^^ . + "rna" . + . + "gold standard" . + . + . + . + . . - "Li7"^^ . - . - "agriculture" . - "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1"^^ . - . - "00000101"^^ . - "http://purl.obolibrary.org/obo/FOBI_"^^ . - "Cell line collections (Providers)"^^ . - . - . - "false"^^ . - "RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary."^^ . - . - . - "NLXORG" . - "https://www.storedb.org/?STOREDB:DATASET"^^ . - "obo" . - . - "peptideatlas.dataset" . - . - "P683" . - "Intelligence Task Ontology" . - "DIP-743N"^^ . - "One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes."^^ . - . - . - . - "software engineering" . - "doid" . - "0000081"^^ . - "^\\w{2,3}(-\\w+)?$"^^ . - . - . - "https://publons.com/researcher/"^^ . - . - "0471491039"^^ . - . - . - . - . - . - "LINCS Small Molecule" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "agriculture" . - "clinical studies" . - . - . - "pathway" . - . - . - . - "williams.antony@epa.gov" . - "life science" . - . - . - . - "^CAL\\d{7}$"^^ . - "Collagen Mutation Database" . - . - . + "http://purl.obolibrary.org/obo/CHEMINF_$1"^^ . + . + . + "gxa.expt" . + "ontology" . + . + "andreas.ledl1@fhnw.ch" . + "https://purl.dataone.org/odo/ADCAD_"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/TAHH_$1"^^ . + "Astrophysics Source Code Library" . + . + "The Gene Expression Omnibus (GEO) is a gene expression repository providing a curated, online resource for gene expression data browsing, query and retrieval."^^ . + . + . + "structure" . + . + . + . + . + "https://www.fishbase.ca/summary/"^^ . + . + . + . + "identifierPattern"^^ . + . + "drugbank.condition" . + . + . + . + "human" . + . + "https://skm.nib.si/api/pss/reactions?reaction_id=$1&return_field=summary"^^ . + . + . + . + "SNOMEDCT_US_2023_02_28" . + "function" . + . + . + "false"^^ . + "life science" . + . + "Zebrafish developmental stages ontology" . + . + "http://purl.org/dc/elements/1.1/"^^ . + . + "1829126"^^ . + "https://www.kazusa.or.jp/rouge/gfpage/"^^ . + . + "Michel Dumontier" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "VCell Published Models" . + . + . + . + "^[1-9]\\d{5}$"^^ . + "http://purl.obolibrary.org/obo/RoleO_"^^ . + . + . + . + . + "^\\d+$"^^ . + . + "https://www.uniprot.org/locations/"^^ . + . + . + "version 2019 - pvs"^^ . + . + . + . + "false"^^ . + . + . + "https://cropontology.org/rdf/CO_348:"^^ . + "https://www.ebi.ac.uk/chembl/compound/inspect/$1"^^ . + "ontology" . + . + "^DTXSID\\d+$"^^ . + "rex" . + . + . + . + . + "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$"^^ . + . + "https://www.probes-drugs.org/compound/$1"^^ . + . + "http://www.nlm.nih.gov/cgi/mesh/2012/MB_cgi?mode=&index=$1&view=expanded"^^ . + . + . + . + . + . + "obo" . + "Kyoto Stock Center" . + "^\\d{7}$"^^ . + "registry" . + . + . + "hprd" . + . + . + "biology" . + . + . + . + "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID=$1"^^ . + . + . + "Cell line collections (Providers)"^^ . + . + "topalis@imbb.forth.gr" . + "MIRIAM Legacy Registry Identifier" . + . + . + "bel" . + . + . + "https://biofactoid.org/document/$1"^^ . + . + "false"^^ . + . + . + . + . + . + "siren" . + . + . + . + . + . + . + "DP00086r013"^^ . + . + "mirEX is a comprehensive platform for comparative analysis of primary microRNA expression data, storing RT–qPCR-based gene expression profile over seven development stages of Arabidopsis. It also provides RNA structural models, publicly available deep sequencing results and experimental procedure details. This collection provides profile information for a single microRNA over all development stages."^^ . + "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . + "1004" . + . + . + . + . + "4DNESWX1J3QU"^^ . + . + . + . + . + "https://www.vmh.life/#reaction/$1"^^ . + . + . + . + . + "https://www.disprot.org/$1"^^ . + . + "WiCell Research Institute Cell Collection" . + . + "ctcae" . + "^PIRSF\\d{6}$"^^ . + . + "false"^^ . + "nihhesc" . + "drug" . + . + "http://purl.obolibrary.org/obo/MFOEM_$1"^^ . + "^S\\d+$"^^ . + . + "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . + . + "SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as \"sssom:mapping_justification\" are defined in the sssom namespace."^^ . + . + "roman@ebi.ac.uk" . + . + . + . + "false"^^ . + . + . + . + "^[0-9]+$"^^ . + . + . + "false"^^ . + . + "ontology" . + "hpm.peptide" . + . + "ontology" . + . + "lincs.data" . + . + . + "false"^^ . + . + . + . + . + . + . + . + "0011140"^^ . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . + . + . + . + . + . + "100101"^^ . + "obo" . + "uniprot.keyword" . + . + "http://usefulinc.com/ns/doap#$1"^^ . + . + . + "ftp://hgdownload.cse.ucsc.edu/goldenPath/$1"^^ . + . + . + "http://purl.obolibrary.org/obo/XAO_$1"^^ . + . + "vendor" . + . + . + "cell lines" . + . + . + . + . + . + . + . + "aop.events" . + "Sugar Kelp trait ontology"^^ . + . + . + . + . + . + "The International Histocompatibility Working Group provides a comprehensive inventory of HLA reference genes to support worldwide research in immunogenetics. We also offer selected cell lines and DNA from our substantial DNA Bank of more than 1,000 cell lines from selected families, as well as individuals with diverse ethnicity and immunologic characteristics."^^ . + "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=$1"^^ . + "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/"^^ . + "genomics" . + . + "obo" . + . + . + "false"^^ . + . + . + "false"^^ . + . + "0000127"^^ . + "https://aopwiki.org/events/$1"^^ . + . + . + "ontology" . + . + . + "ai10e-kctd13b"^^ . + . + . + . + . + . + "medicine" . + . + . + . + "Identifier of an entry from the AAindex database."^^ . + . + "cba" . + . + "protein" . + "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1"^^ . + "dna" . + . + . + . + "phenotype" . + . + . + . + "ontology" . + . + "nasc" . + . + "structure" . + . + . + . + "false"^^ . + "false"^^ . + . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information."^^ . + . + . + . + . + . + . + . + . +_:N9c7ccd46735d4414b9be37bf3980a722 "maria.herrero@kcl.ac.uk" . + . + . + . + "gene" . + "pso" . + . + . + "metadata" . + . + "Genotype Ontology" . + "small molecule" . + . + . + . + . + "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records."^^ . + . + . + "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc."^^ . + . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene."^^ . + "life science" . + "http://www.signaling-gateway.org/molecule/query?afcsid=$1"^^ . + . + . + "COSMIC Cell Lines" . + . + "0000013"^^ . + . + . + "Chris Mungall" . + . + . + . + . + . + "^CA\\d+$"^^ . + . + . + . + "wb.rnai" . + . + . + "This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language."^^ . + "Property"^^ . + "Dalia Alghamdi" . + "01N50ZZ"^^ . + . + "viperdb" . + . + . + . + "gfo" . + "tto" . + . + . + . + "rna" . + . + . + "colonatlas" . + . + . + . + . + "Bibliographic Reference Ontology" . + . + "http://standards.iso.org/iso/15926/part14/$1"^^ . + . + "http://bioportal.bioontology.org/ontologies/"^^ . + "Information Artifact Ontology" . + "NIFSTD" . + . + "has canonical" . + "proteomics" . + . + . + . + . + . + . + "structure" . + "gramene.gene" . + "http://senselab.med.yale.edu/ORDB/Data/$1"^^ . + "isrctn" . + . + . + . + . + . + . + . + "MMP3312982.2"^^ . + . + . + . + . + "alzheimer's disease" . + "IUPHAR_LIGAND" . + . + . + "ontology" . + . + . + . + "https://datanator.info/reaction/$1"^^ . + "depmap" . + "https://id.loc.gov/authorities/$1"^^ . + . + . + "neuroscience" . + . + "ontology" . + "Life cycle stages for Human"^^ . + . + . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. This collection references metabolite information, relating the biologically active substance to metabolic pathways or signalling phenomena."^^ . + . + . + . + "protein" . + . + . + . + "cell" . + . + . + . + "http://www.t3db.org/toxins/"^^ . + . + . + . + "RoleInTime"^^ . + "NLXOEN prefixed identifiers are from the version of the Ontology for Experimental Neurophysiology (OEN; https://github.com/G-Node/OEN) that were originally deposited in Neurolex (for examples, see https://scicrunch.org/scicrunch/interlex/search?q=NLXOEN results)."^^ . + . + . + . + . + . + . + "http://vita.mbc.nctu.edu.tw/search.php?acc="^^ . + "^\\d+$"^^ . + "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_"^^ . + . + . + "CIViC gene" . + "biochemistry" . + "https://tools.ietf.org/rfc/rfc"^^ . + "cellrepo" . + . + . + "http://purl.org/spar/datacite/"^^ . + . + "Database of the dielectric properties of biological tissues."^^ . + "false"^^ . + . + "life science" . + "ontology" . + . + . + "The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members."^^ . + . + . + _:N8d2f6d39f29d41e38c577baad90b69f9 . + "false"^^ . + . + "TriTrypDB" . + . + "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding."^^ . + . + "^[1-9]\\d{0,11}$"^^ . + . + . + "medicine" . + . + . + . + "taxonomy" . + "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id=$1"^^ . + . + "Matthias Samwald" . + . + . + . + "23"^^ . + "http://purl.obolibrary.org/obo/CDNO_$1"^^ . + . + . + . + . + "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references structural entries in the database."^^ . + . + "ProteomicsDB Peptide" . + . + . + . + "false"^^ . + "false"^^ . + . + . + "false"^^ . + . + . + . + . + . + . + "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . + . + . + . + "quality" . + "PASS01237"^^ . + . + . + . + . + "SED-ML data format" . + . + . + . + "NCBITaxonomyID" . + . + . + "" . + "genomics" . + . + . + "bioinformatics" . +_:N97fe579fac334c8ca90aeb591f335afa "jamsden@us.ibm.com" . + . + . + "co_334" . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_358:"^^ . + "^K[0-9]+$"^^ . + . + . + . + . + . + "The ALlele FREquency Database" . + . + . + . + . + "BE0000048"^^ . + . + "r3d100010772"^^ . + . + . + . + . + . + "56"^^ . + . + . + . + . + . + . + . + "Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea."^^ . + "false"^^ . + "d1id" . + . + "https://www.ncbi.nlm.nih.gov/cdd?term="^^ . + "DirectiveInformationContentEntity"^^ . + "Cell line databases/resources"^^ . + . + "metaregistry" . + . + . + . + "Neil McKenna" . + . + . + . + . + "ekaterina.chuprikova@eurac.edu" . + "pdbsum" . + "https://vectorbase.org/gene/"^^ . + "proteomics" . + "ontology" . + . + "http://purl.obolibrary.org/obo/ZECO_"^^ . + "A10BA02"^^ . + . + . + . + "64ba"^^ . + "https://gen3.theanvil.io/ga4gh/drs/v1/objects/"^^ . + "Gerald Guala" . + . + . + . + "The database focuses on the comparative genomics of Shigella and provides a way to summarize large volumes of genomic and comparison data in a visually intuitive format."^^ . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_chem_"^^ . + . + . + . + . + "false"^^ . + . + "false"^^ . + . + "virology" . + . + "http://edamontology.org/data_$1" . + "structure" . + . + . + "ontology" . + . + . . - . - . - "false"^^ . - . - . - . - . - "^[1-9]\\d*$"^^ . - . - . - . - "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=$1"^^ . - . - . - "cutg" . - "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."^^ . + . + . + . + "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."^^ . + "Cell line databases/resources"^^ . + . + . + "gene" . + . + "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName="^^ . + . + "false"^^ . + . + . + "ontology" . + . + . + "rmrich5@gmail.com" . + "false"^^ . + "http://purl.obolibrary.org/obo/OMIT_"^^ . + "agriculture" . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_dys_"^^ . + . + "obo" . + . + "https://www.nextprot.org/term/FA-"^^ . + "ecso" . + "James C. Hu" . + . + . + . + "GM17027"^^ . + . + . + . + . + "false"^^ . + "gene" . + "2673500"^^ . + . + . + "https://www.gwascentral.org/phenotype/"^^ . + "cell regeneration" . + "dbmhc" . +_:N1531bf92c67e42119f18e5fedbef62f9 "po-discuss@plantontology.org" . + "https://go.drugbank.com/reactions/$1"^^ . . - "Ribocentre" . - "data analysis service" . - . - "Jingshan Huang" . - "https://www.ncbi.nlm.nih.gov/homologene/$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/PCL_$1"^^ . - "bacmap.biog" . - . - . - "transcriptomics" . - . - "^\\d+$"^^ . - . - "biopesticides" . - . - "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$"^^ . - "^T\\d{3}$"^^ . - "63189"^^ . - . - . - . - . - "https://bioregistry.io/phosphopoint.protein:"^^ . - . - "ChEBI"^^ . - . - "https://cropontology.org/rdf/CO_370:"^^ . - . - "biodiversity" . - . - . - "eff796f3-6195-11e5-8ac5-06603eb7f303"^^ . - . - . - . - . - . - . - . - . - . - "life science" . -_:Ne15f697bb7944ad0802de233570457b3 "BioModels.net team" . - . - "small molecule" . - . - . - . - "mouse embryonic stem cell line" . - . - . - "4D Nucleome Data Portal Biosource" . - . - "false"^^ . - "genetic engineering" . - "http://www.bootstrep.eu/ontology/GRO#"^^ . - . - . - . - . - . - . - . - "https://drugs.ncats.io/drug/$1"^^ . - "http://purl.obolibrary.org/obo/DIDEO_"^^ . - . - "astrophysics and astronomy" . - . - . - "obo" . - "Standards and Ontologies for Functional Genomics (SOFG) Anatomy Entry List" . - . - . - . - . - "Panorama Public" . - "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=$1"^^ . - "http://purl.obolibrary.org/obo/ORNASEQ_$1"^^ . - "bioregistry" . + "biomedical science" . + "https://www.kegg.jp/entry/$1"^^ . + . + . + "false"^^ . + . + "agriculture" . + . + "6200"^^ . + "anatomy" . + "European Food Information Resource Network" . + . + "ontology" . + "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$"^^ . + "https://biopragmatics.github.io/providers/icepo/$1"^^ . + . + "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster=$1"^^ . + . + . + . + . + "agriculture" . + . + "^[A-Z0-9]+$"^^ . + "false"^^ . + . + "https://publons.com/researcher/$1"^^ . + . + . + "metadata" . + . + . + "The COVID-19 epidemiology and monitoring ontology" . + "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments."^^ . + . + . + . + "http://isbndb.com/search-all.html?kw=$1"^^ . + "Carrine Blank" . + . + . + "The coding sequence or protein identifiers as maintained in INSDC."^^ . + "Activity"^^ . + . + "The Signaling Pathways Project is an integrated 'omics knowledgebase based upon public, manually curated transcriptomic and cistromic (ChIP-Seq) datasets involving genetic and small molecule manipulations of cellular receptors, enzymes and transcription factors. Our goal is to create a resource where scientists can routinely generate research hypotheses or validate bench data relevant to cellular signaling pathways."^^ . + . + "http://purl.obolibrary.org/obo/BTO_$1"^^ . + "D001151"^^ . + . + "DAPK1"^^ . + "International Standard Name Identifier" . + "http://genome.crg.es/datasets/abs2005/entries/$1.html"^^ . + . + "^\\w+$"^^ . + . + . + "comparative genomics" . + "ontology" . + . + . + "http://purl.obolibrary.org/obo/CL_$1"^^ . + . + "^\\d+$"^^ . + . + . + "^\\d+$"^^ . + . + . + . + "Taxonomic rank vocabulary" . + "commoncoreontology" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ONS_$1"^^ . + . + "http://www.ontobee.org/ontology/$1" . + "MRA-253"^^ . + . + . + . + . + . + . + "The Statistical Methods Ontology" . + "http://purl.obolibrary.org/obo/MOD_"^^ . + . + . + "col.taiwan" . + . + . + "neXtProt family" . + . + . + . + . + . + . + "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"."^^ . + . + . + . + . + . . - . - "pubchem.substance" . - "anatomy" . - . - "^r3d\\d{9,9}$"^^ . - "CHEBI" . - "^\\w+$"^^ . - "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information."^^ . - . - "enzyme" . - . - . - "UDB000691"^^ . - . - . - "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id="^^ . - . - . - . - . - . - "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."^^ . - . - . - . - . - . - "https://depmap.org/portal/cell_line/$1"^^ . - "https://bioregistry.io/kerafast:"^^ . - . - "ontology" . - "false"^^ . - . - "https://modeldb.science/"^^ . - "epidemiology" . - "identifiers.namespace" . - "true"^^ . - "hinv.protein" . - . - . - "go.resource" . - . - . - "inxight" . - . - "rebec" . - . - "http://solgenomics.net/phenome/locus_display.pl?locus_id="^^ . - "https://reactome.org/content/detail/"^^ . - . - . - . - . - "^A\\d{6}$"^^ . - "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome."^^ . - . - . - "^\\d{7}$"^^ . - . - . - "^[A-Za-z_0-9]+$"^^ . - . - "false"^^ . - . - . - . - "health science" . - "Marcin Pawel Joachimiak" . - "http://www.drugbank.ca/drugs/"^^ . + . + "http://www.nlm.nih.gov/medlineplus/ency/article/$1.htm"^^ . + . + "false"^^ . + . + . + . + . + . + . + "IDEAL provides a collection of knowledge on experimentally verified intrinsically disordered proteins. It contains manual annotations by curators on intrinsically disordered regions, interaction regions to other molecules, post-translational modification sites, references and structural domain assignments."^^ . + . + . + . "funcbase.mouse" . - . - . - . - . - . - "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"^^ . - . - "^\\d+$"^^ . - . - . - . - "false"^^ . - . - . - "Healthcare Organizations and Services Ontology" . - "DragonDB Allele" . - . - . - . - . - "http://purl.obolibrary.org/obo/OAE_$1"^^ . - "http://www.hmdb.ca/metabolites/"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task="^^ . - . - . - . - "ctgov" . - . - . - . - "UniRef" . - . - "ecolexicon" . - "^[A-Za-z_]+$"^^ . - . - "0000546"^^ . - . - . - . - . - . - . - "DSSTox substance" . - "http://purl.obolibrary.org/obo/VHOG_"^^ . - . - . - "cemo" . - . - . - "gene" . - "false"^^ . - . - . - . - . - . - . - . - "taxonomy" . - "interaction" . - "genotyping" . - . - "false"^^ . - . - "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus"^^ . - . - . - "false"^^ . - "taxonomy" . - . - "sabiork.ec" . - . - . - . - "dna" . - . - "https://odc-tbi.org/data/"^^ . - . - . - . - . - "D00001"^^ . - . - "glyconavi" . - . - "structure" . - "biology" . - "http://purl.obolibrary.org/obo/PHIPO_$1"^^ . - . - . - "PubChem Element gives information on chemical elements like Hydrogen, with the local identifier corresponding to the atomic number."^^ . - . - . - . - "http://purl.obolibrary.org/obo/FBbi_"^^ . - . - "https://ensaiosclinicos.gov.br/rg/"^^ . - . - . - "An ontology and inventory of geopolitical entities such as nations and their components (states, provinces, districts, counties) and the actual physical territories over which they have jurisdiction. We thus distinguish and assign different identifiers to the US in \"The US declared war on Germany\" vs. the US in \"The plane entered US airspace\"."^^ . - . - "CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms"^^ . - . - . - . - "http://purl.obolibrary.org/obo/FBcv_$1"^^ . - . - "obo" . - "Universal Spectrum Identifier" . - "http://purl.obolibrary.org/obo/PLANA_$1"^^ . - . - . - . - "silvio.peroni@unibo.it" . - . - . - . - . - . - . - "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession="^^ . - . - "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1"^^ . - "false"^^ . - . - . - . - "http://bitterdb.agri.huji.ac.il/bitterdb/compound.php?id=$1"^^ . - "^\\S+$"^^ . - "^\\d{7}$"^^ . -_:N41714787cd9047729c702a0d53c298fe "Vivian Lee" . - "life science" . - . - . - . - . - . - . - . - "http://agroportal.lirmm.fr" . - . - . - . - "http://www.phosphosite.org/proteinAction.do?id=$1"^^ . - . - . - . - "^\\d{8}$"^^ . - . - . - . - . - . - . - "obo" . - . - "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output."^^ . - . - . - . - . - . - "Human Metabolome Database" . - . - . - . - . - "rnacentral" . - "omia" . - "ConfIDent Event" . - "Pharmacogene Variation Consortium" . - . - "^\\d{7}$"^^ . - . - . - "veterinary medicine" . - "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term="^^ . - . - "false"^^ . + "PTPN1"^^ . + . + . + . + . + "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc."^^ . + . + . . - . - . - . - "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded."^^ . - . - "ProteomicsDB Protein" . - . - . - "00005643"^^ . - . - . - . - . - . - . - "1"^^ . - . - "0020"^^ . - "NDF-RT combines the NDF hierarchical drug classification with a multi-category reference model. The categories are: Cellular or Molecular Interactions [MoA]; Chemical Ingredients [Chemical/Ingredient]; Clinical Kinetics [PK]; Diseases, Manifestations or Physiologic States [Disease/Finding]Dose Forms [Dose Form]; Pharmaceutical Preparations; Physiological Effects [PE]; Therapeutic Categories [TC]; and VA Drug Interactions [VA Drug Interaction]."^^ . - . - . - "Dylan McGagh" . - . - . - . - . - "structure" . - . - . - "Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations"^^ . - "chemical" . - "This ontology represents the clinical findings and procedures used in the oral and maxillo-facial surgical domain"^^ . - . - "false"^^ . - . - . -_:N87ad6811330e431f950b1e30885e91e2 "ICARDA Ethiopia" . - "SciCrunch Registry" . - . - . - . - . - . - . - . - . - "00000443"^^ . - . - . - "NCI2004_11_17" . - . - . - "https://icd.who.int/browse10/2019/en#/"^^ . - "small molecule" . - . - "0000002"^^ . - . - . - . - "CRISP Thesaurus, 2006" . - "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:$1"^^ . - . - . - . - . - "biomedical science" . - . - "hamap" . - . - . - . - . - . + "35742"^^ . + "glycosciences.db" . + "2gc4E"^^ . + . + "GOLD metadata" . + . + . + . + "mmrrc" . + "^[a-z][a-z]/[0-9]+$"^^ . + . + . + . + . + . + "false"^^ . + . + . + "https://cropontology.org/rdf/CO_356:$1"^^ . + . + "https://www.confident-conference.org/index.php/Event:$1"^^ . + . + "^[0-9]{5}(-[a-zA-Z0-9-]{0,7})?$|^[0-9]{10}$"^^ . + . + . + "0000400"^^ . + . + . + "reactions" . + "true"^^ . + . + "http://www.chemspider.com/"^^ . + . + . + . + . + "^Os\\S+t\\d{7}-\\d{2}$"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + "0000001"^^ . + . + . + "false"^^ . + "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."^^ . + "bto" . + "microbiology" . + . + . + . + . + . + . + . + "Sandra Orchard" . + "https://bioregistry.io/odam:"^^ . + . + . + . + . + . + . +_:N641d58cfc2994b59bbd0f1fa78f75e74 "Vladimir Mironov" . + "tokue" . + . + . + . + "1257009"^^ . + . + . + . + . + "India Clinical Trials Registry" . + "2005080"^^ . + . + "https://civicdb.org/links/assertions/$1"^^ . + . + "https://www.inaturalist.org/places/"^^ . + . + . + . + "geography" . + "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."^^ . + . + . + . + . + "chmo" . + "^\\d{7}$"^^ . + "0000055"^^ . + "^\\d{7}$"^^ . + "false"^^ . + "Philippe Le Mercier" . + . + . + "It is an ontology model used to describe associations between biomedical entities in triple format based on W3C specification. OBAN is a generic association representation model that loosely couples a subject and object (e.g. disease and its associated phenotypes supported by the source of evidence for that association) via a construction of class OBAN:association. [from GitHub]"^^ . + . + . + "https://athena.ohdsi.org/search-terms/terms/"^^ . + . + _:N22f04e226201488a9f275ba78ac9c56b . + . + . + . + "DragonDB DNA" . + . + . + "MaizeGDB" . + "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId="^^ . + . + . + . + . + . + "longevity" . + . + "Scopus Work" . + "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community."^^ . + . + . + "animal physiology" . + "http://www.ymdb.ca/compounds/$1"^^ . + "^\\d{7}$"^^ . + . + "Alayne Cuzick" . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OBI_$1"^^ . + . + "life science" . + . + "https://www.inaturalist.org/observations/$1"^^ . + "https://dandiarchive.org/dandiset/$1"^^ . + . + . + "^\\d+$"^^ . + . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=c&compID="^^ . + . + . + . + . + . + . + "medicine" . + . + "https://go.drugbank.com/salts/$1"^^ . + . + "Data Use Ontology" . + . + . + "Rice annotation Project database" . + . + . + . + "zeco" . + "Bitbucket" . + . + . + . + "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions."^^ . + . + . + "The Virus Pathogen Database and Analysis Resource (ViPR) supports bioinformatics workflows for a broad range of human virus pathogens and other related viruses. It provides access to sequence records, gene and protein annotations, immune epitopes, 3D structures, and host factor data. This collection references viral strain information."^^ . + . + . + . + . + . + "false"^^ . + . + "PepBank is a database of peptides based on sequence text mining and public peptide data sources. Only peptides that are 20 amino acids or shorter are stored. Only peptides with available sequences are stored."^^ . + "OUYCCCASQSFEME-MRVPVSSYSA-N"^^ . + . + . + . + . + "datanator.metabolite" . + . + "hl7.v2codesystem" . + . + . + . + . + . + . + . + "nmr" . + . + . + . + . + "false"^^ . + "true"^^ . + . + . + . + "arachnoserver" . + "https://biopragmatics.github.io/providers/sfam/$1"^^ . + . + . + . + . + . + "The Basic Register of Thesauri, Ontologies & Classifications (BARTOC) is a database of Knowledge Organization Systems and KOS related registries.\nThe main goal of BARTOC is to list as many Knowledge Organization Systems as possible at one place in order to achieve greater visibility, highlight their features, make them searchable and comparable, and foster knowledge sharing. BARTOC includes any kind of KOS from any subject area, in any language, any publication format, and any form of accessibility. BARTOC’s search interface is available in 20 European languages and provides two search options: Basic Search by keywords, and Advanced Search by taxonomy terms. A circle of editors has gathered around BARTOC from all across Europe and BARTOC has been approved by the International Society for Knowledge Organization (ISKO)."^^ . + . + "A GO annotation is a statement about the function of a particular gene. Each annotation includes an evidence code to indicate how the annotation to a particular term is supported."^^ . + "Rv1908c"^^ . + . + . + . + "European Searchable Tumour Line Database" . + . + . + . + . + . + . + "https://www.ebi.ac.uk/pride/archive/projects/$1"^^ . + . + . + . "Charles Tapley Hoyt" . - "SP_VAR" . - . - "chebi" . - . - "Cellular Microscopy Phenotype Ontology" . - . - "https://www.ebi.ac.uk/chembl/compound/inspect/"^^ . - . - . - . - . - . - "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - "http://purl.org/spar/datacite/"^^ . - . - "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id="^^ . - . - . - "^[A-Za-z0-9_-]+$"^^ . - . - . - . - . - "^\\d+$"^^ . - "GlycoNAVI is a website for carbohydrate research. It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools."^^ . - "Lindsey N. Anderson" . - "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1"^^ . - "Toxic Process Ontology" . - . - "life science" . - . - . - . - "SBGN Bricks data and ontology" . - "ac" . - "has provider formatter" . - . - . - . - "life science" . - . - "pesticides" . - "^\\w+$"^^ . - . - "PesticideInfo chemical ID" . - . - . - . - . -_:Nac3b925206fd4665aad57e5e11afb65a "Intellectual.PropertyServices@ama-assn.org" . - "https://bioregistry.io/vsdb:"^^ . - . - . - . - . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/$1"^^ . + "false"^^ . + . + "hoso" . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. This collection refers to records using the HGNC symbol."^^ . + . + . + . + . + . + "https://cropontology.org/rdf/CO_356:"^^ . + "^\\w+$"^^ . + . + . + . + . + . + . + "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network."^^ . + . + "KW-1273"^^ . + . + . + . + . + . + . + . + . + . + . + "http://yeastrc.org/pdr/viewProtein.do?id="^^ . + "m.a.laporte@cgiar.org" . + "72ff6ff882ec447f12df018e6183de59"^^ . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . + . + . + . + . + "false"^^ . + . + . + . + . + "https://www.pgscatalog.org/pgs/$1"^^ . + . + "http://tuberculist.epfl.ch/quicksearch.php?gene+name="^^ . + . + . + "ontology" . + . + . + . + . + . + . + . + . + "chemical" . + . + "https://www.checklistbank.org/dataset/$1"^^ . + "long-finned-pilot-whale"^^ . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/CARO_$1"^^ . + . + "genomics" . + "false"^^ . + . + "false"^^ . + "SABIO-RK" . + . + "trnadbce" . + . + . + "0000091"^^ . + . + "http://purl.obolibrary.org/obo/ECO_"^^ . + . + . + . + "data management" . + . + "miw023@ucsd.edu" . + . + . + "false"^^ . + "pdc.study" . + . + "0001000"^^ . + . + . + . + . + "0000025"^^ . + "icdo" . + . + . + "protein" . + "https://grch38.togovar.org/variant/$1"^^ . + "CORDIS Article" . + . + . + . + . + "anatomy" . + . + . + . + "LCSCCPN"^^ . + . + . + . + . + . + . + . + "bel" . + "ftt" . + . + . + . + . + . + . + . + . + "semantic web" . + . + "vendor" . + . + . + . + . + "BiGG Metabolite" . + . + "chemistry" . + . + "Protein Affinity Reagents" . + "upper-level ontology" . + . + . + "https://cameochemicals.noaa.gov/chemical/"^^ . + . + "taxonomy" . + . + . + . + . + "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid="^^ . + . + "FungiDB" . + "opm" . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/HAO_$1"^^ . + . + . + "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. Each protease sequence is curated and, when necessary, cloned and sequenced."^^ . + . + . + . + . + "The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions."^^ . + "PdumDv" . + . + "false"^^ . + . + "proteomicsdb.peptide" . + . + "NameRXN" . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession."^^ . + "life science" . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . + . + . + . + . + . + . + . + "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name="^^ . + "^\\d{7}$"^^ . + . + "Ontology of Microbial Phenotypes" . + . + . + "medgen" . + . + "mouse strain" . + "LiceBase" . + . + "jrc-eurl-ecvam-chemagora"^^ . + "uniprot.taxonomy" . + . + "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query="^^ . + . + . + . + . + . + . + "projects_to"^^ . + "WWF ecoregions are large unit of land or water containing a geographically distinct assemblage of species, natural communities, and environmental conditions."^^ . + . + "http://www.hprd.org/protein/"^^ . + "obo" . + . + "druzinsk@uic.edu" . + "Natural Product-Drug Interaction Research Data Repository" . + "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID="^^ . + . + . + "toxicology" . + "false"^^ . + . + . + . + "mpjensen@buffalo.edu" . + . + "https://scicrunch.org/resolver/RRID:$1"^^ . + . + . + "http://ftp.ebi.ac.uk/pub/databases/lrgex/$1.xml"^^ . + . + . + "http://csbl.bmb.uga.edu/DOOR/operon.php?id=$1"^^ . + . + . + "Transcriptional Regulatory Element Database" . + "Novus Biologicals" . + "cell biology" . + . + . + . + . + "medicine" . + . + . + "https://www.rhea-db.org/rhea/$1"^^ . + "151022"^^ . + "UniGene" . + . + . + . + . + . + . + "http://www.ontology-of-units-of-measure.org/resource/om-2/$1"^^ . + . + "National Center for Advancing Translation Sciences BioPlanet" . + "Radiomics Ontology" . + . + . + . + . + "biochemistry" . + . + "9606"^^ . + . + . + "http://genomics.senescence.info/genes/details.php?id="^^ . + "https://www.ebi.ac.uk/ega/datasets/"^^ . + "http://purl.obolibrary.org/obo/GNO_"^^ . + . + . + "Apple (Malus domestica) defines crop traits and variables to support the standardisation of apple breeding databases providing description of agronomic, morphological, physiological, quality traits, its methods and scales."^^ . + . + "The Mouse Tumor Biology (MTB) Database supports the use of the mouse as a model system of hereditary cancer by providing electronic access to Information on endogenous spontaneous and induced tumors in mice, including tumor frequency & latency data, information on genetically defined mice (inbred, hybrid, mutant, and genetically engineered strains of mice) in which tumors arise, and information on genetic factors associated with tumor susceptibility in mice and somatic genetic-mutations observed in the tumors."^^ . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry."^^ . + "ontology" . + . + . + . + "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp=$1"^^ . + "sourceDateStart"^^ . + "^\\d{7}$"^^ . + . + "hgnc.genefamily" . + . + . + . + "classification" . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_anat_"^^ . + "Amelanchier laevis"^^ . + "https://models.physiomeproject.org/exposure/"^^ . + "kuiper@bio.ntnu.no" . + "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored."^^ . + . + _:N9e9771e602eb4413b1a7aa32485aa5b5 . + . + . + . + "false"^^ . + . + . + . + . + "true"^^ . + . + "ENSGT00550000074763"^^ . + . + "true"^^ . + "ontology" . + "http://purl.obolibrary.org/obo/ZEA_$1"^^ . + "^\\d+$"^^ . + . + . + . + "International repository of Adverse Outcome Pathways."^^ . + "GitLab" . + "Loggerhead nesting" . + "obo" . + . + . + "NCBI Bookshelf" . + . + . + . + "FoodEx2 is a comprehensive food classification and description system aimed at covering the need to describe food in data collections across different food safety domains."^^ . + "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$"^^ . + "Pan African Clinical Trials Registry" . + . + . + . + "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm="^^ . + "https://www.ncbi.nlm.nih.gov/probe/?term=$1"^^ . + . + "phenotyping" . + . + . + "glycosciencesdb" . + "78"^^ . + . + . + "The international standard for identifying health measurements, observations, and documents."^^ . + . + "https://bioregistry.io/n2t:"^^ . + . + . + "developmental biology" . + . + . + . + . + . + "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$"^^ . + . + . + . + . + . + "The W3C Web Annotation Working Group is chartered to develop a set of specifications for an interoperable, sharable, distributed Web Annotation architecture."^^ . + . + "omop" . + . + "false"^^ . + . + . + "WOrfDB (Worm ORFeome DataBase) contains data from the cloning of complete set of predicted protein-encoding Open Reading Frames (ORFs) of Caenorhabditis elegans. This collection describes experimentally defined transcript structures of unverified genes through RACE (Rapid Amplification of cDNA Ends)."^^ . + "true"^^ . + "http://purl.org/spar/datacite/$1"^^ . + "559"^^ . + . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "LOTUS, actually, represents the most exhaustive resource of documented structure-organism pairs. Within the frame of current computational approaches in Natural Produts’s research and related fields, these documented structure-organism pairs should allow a more complete understanding of organisms and their chemistry."^^ . + . + . + . + "^\\d+$"^^ . + . + . + "tissue" . + "http://www.geneontology.org/formats/oboInOwl#$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment."^^ . + "http://purl.obolibrary.org/obo/PCL_$1"^^ . + "http://purl.obolibrary.org/obo/RS_$1"^^ . + "0002058"^^ . + . + . + . + . + . + "^\\d{7}$"^^ . + "^\\d{7}$"^^ . + . + "EDDA Study Designs Taxonomy" . + "RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary."^^ . . - "medicine" . - . - . - . - . - . - "protocol" . - "^\\d+$"^^ . - . - "true"^^ . - . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1"^^ . - . - . - . - . - "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1"^^ . - . - . - . - . - "Disease Class" . - . - . + . + "false"^^ . + . + "ls-c35719-120"^^ . + . + "germplasma" . + "http://purl.obolibrary.org/obo/HABRONATTUS_$1"^^ . + . + . + . + . + . + "false"^^ . + "^\\w+(\\-)?\\w+(\\-)?\\w+$"^^ . + . + "AT5G05330"^^ . + . + "http://purl.obolibrary.org/obo/IDO_$1"^^ . + . + "catalog" . + "^[0-9]+$"^^ . + "false"^^ . + "Planarian Phenotype Ontology" . + . + "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + . + . + . + . + "medicine" . + "http://crdd.osdd.net/servers/virsirnadb/record.php?details="^^ . + "false"^^ . + "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1"^^ . + . + "^001\\d{5}$"^^ . + . + . + "biomedical science" . + . + . + "16793"^^ . + . + . + "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT="^^ . + . + . + . + . + _:Nb666dc69b4614275bdcddecad7d0f15a . + . + "qtl" . + "http://purl.obolibrary.org/obo/FOBI_"^^ . + "false"^^ . + "mammalian" . + "Taconic Biosciences" . + . + . + . + . + "The namespace name http://www.w3.org/ns/prov# is intended for use with the PROV family of documents that support the interchange of provenance on the web."^^ . + . + "false"^^ . + "spectrometry" . + "hsa-mir-200a"^^ . + . + "NINDS Human Cell and Data Repository" . + "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid="^^ . + . + "0000078"^^ . + . + "structure" . + . + . + "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$"^^ . + . + . + "GenBank ® is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences (Nucleic Acids Research, 2013 Jan;41(D1):D36-42)."^^ . + "qualities" . + . + . + . + . + "wikipedia" . + . + . + . + "publons.publication" . + . + . + . + . + "^\\d{7}$"^^ . + "Dylan McGagh" . + . + "ontology" . . - . + "http://purl.obolibrary.org/obo/GECKO_"^^ . + . + . + "A comprehensive proteomics data and process provenance ontology."^^ . + "ontology" . + . + "AURKA"^^ . + . + "dg.f82a1a" . + . + . + . + "salamander" . + . + . + . + "^\\d+$"^^ . + . + "life science" . + . + . + . + "https://fungi.ensembl.org/id/"^^ . + "pba" . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "Blue Brain Project's published data as knowledge graphs and Web Studios."^^ . + "The Signaling Gateway provides information on mammalian proteins involved in cellular signaling."^^ . + "Curated biochemical pathways for Saccharomyces cerevisiae at Saccharomyces genome database (SGD)."^^ . + . + . + . + . + "SM_UB-81"^^ . + . + . + "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . + . + "genomics" . + "^\\d+$"^^ . + . + . + . + _:Ncb371b9251d84927994678e142aadc0e . + "The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including:\n\n- US Approved Drugs\n- Marketed Drugs\n- Investigational Drugs\n- Other Substances"^^ . + . + . + "CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides links from these roles to useful other classes in other ontologies. This will allow direct connection between chemical structures (small molecules, drugs) and what they do. This could be formalized using 'capable of', in the same way Uberon and the Cell Ontology link structures to processes."^^ . + . + "AKR"^^ . + "botany" . + . + . + "false"^^ . + "^\\d{8}$"^^ . + . + "br/0601"^^ . + . + . + "The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public."^^ . + . + "Probability Distribution Ontology" . + . + "gene" . + . + . + . + "http://purl.obolibrary.org/obo/$1_$2" . + . + "The VBRC provides bioinformatics resources to support scientific research directed at viruses belonging to the Arenaviridae, Bunyaviridae, Filoviridae, Flaviviridae, Paramyxoviridae, Poxviridae, and Togaviridae families. The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis."^^ . + "http://purl.obolibrary.org/obo/ADO_"^^ . + . + . + "http://purl.obolibrary.org/obo/PROPREO_"^^ . + "ontology" . + . + . + "http://purl.org/spar/deo/"^^ . + "https://lotus.naturalproducts.net/compound/lotus_id/"^^ . + "The DRSC (Drosophila RNAi Screening Cente) tracks both production of reagents for RNA interference (RNAi) screening in Drosophila cells and RNAi screen results. It maintains a list of Drosophila gene names, identifiers, symbols and synonyms and provides information for cell-based or in vivo RNAi reagents, other types of reagents, screen results, etc. corresponding for a given gene."^^ . + "false"^^ . + . + . + . + . + . + . + "pharmacology" . + . + "Database of Genomic Structural Variation - Variant" . + . + "false"^^ . + "https://flybase.org/reports/FBtc$1"^^ . + . + "classification" . + . + . + . + . + "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID="^^ . + . + "bioinformatics" . + "KEGG Enzyme" . + . + . + . + . + "animal husbandry" . + "ontology" . + . + . + "http://purl.obolibrary.org/obo/HSO_$1"^^ . + . + "pharmacogenomics" . + . + . + . + . + "obo" . + "false"^^ . + . + "biology" . + . + "MF_01400"^^ . + . + . + . + "^Rv\\d{4}(A|B|c)?$"^^ . + "UMR7315"^^ . + "pathway" . + "elm" . + "inxight-drugs" . + "http://purl.org/net/orth#$1"^^ . + . + . + "https://bioregistry.io/dbd:"^^ . + . + "634515043"^^ . + "Scientific Information Retrieval and Exchange Network" . + . + . + "http://purl.obolibrary.org/obo/OHMI_$1"^^ . + "^1\\d{4}-\\d{3}$"^^ . + . + . + . + . + . + _:Nf56ce5accf304c63a0b83fc5a0e113c4 . + "false"^^ . + . + . + "0000001"^^ . + "Yeast Intron Database v3" . + "4214"^^ . + "bibliography" . + "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." . + . + . + . + . + "https://www.confident-conference.org/index.php/Event_Series:"^^ . + . + . + . + . + . + . + . + . + . + "data governance" . + . + "genprop" . + "http://www.sbgnbricks.org/BKO/full/entry/all/BKO:"^^ . + . + "omim.ps" . + . + . + . + . + . + "sprint" . + . + "^\\d+$"^^ . + . + . + "4.2.78"^^ . + . + . + . + "Expression"^^ . + "marker" . + "^\\d{7}$"^^ . + "goa" . + . + . + . + . + . + . + . + "obo" . + . + "WP732"^^ . + . + . + . + . + . + . + "ontology" . + . + "^\\d+$"^^ . + . + . + . + . + "false"^^ . + . + "evm" . + "^oai\\:cwi\\.nl\\:\\d+$"^^ . + . + . + "protein" . + "genome" . + . "proglyc" . - . - "^bkc[0-9]*$"^^ . - . - "population genetics" . - . - "medical informatics" . - "bioregistry"^^ . - "https://www.ncbi.nlm.nih.gov/medgen/$1"^^ . - . - "worm" . - . - . - . - . - . - "Haruki Nakamura" . - . - . - . - . - "DBCAT000600"^^ . - . - . - . - "chemistry" . - . - "https://bioregistry.io/ligandexpo:"^^ . - "bel" . - . - "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?"^^ . - . - . - . - . - . - "The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays."^^ . - . - . - . - . - . - . - "biomedical science" . - . - . - . - . - . - . - . + "medicine" . + . + . + . + . + . + . + "^MCDS_C_[a-zA-Z0-9]{1,10}$"^^ . + . + "false"^^ . + "Alan Bridge" . + . + "^[-A-Za-z0-9\\_]*$"^^ . + "^DAP\\d+$"^^ . + . + . + . + . + . + "https://morpheus.gitlab.io/models/"^^ . + "Stacia R Engel" . + "NIF Cell" . + . + . + "ontology" . + "Models developed with the Virtual Cell (VCell) software prorgam."^^ . + . + . + "microbial" . + "re3data" . + _:N90875648f8524cd48ed83e7dfcff07f3 . + "http://nava.liacs.nl/cgi-bin/nava.py?id="^^ . + "obo" . + "^[A-Za-z0-9]+$"^^ . + . + . + . + "^\\d+$"^^ . + . + "false"^^ . + . + . + . + "lgai.cede" . + "co_367" . + "http://pid.nci.nih.gov/search/pathway_landing.shtml?what=graphic&jpg=on&pathway_id="^^ . + . + . + "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" . + "03307879"^^ . + "SL-0002"^^ . + . + . + . + "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$"^^ . + . + . + . + "004435"^^ . + "https://www.rhea-db.org/rhea/"^^ . + . + "small molecule" . + . + . + . + . + "0000013"^^ . + . + "ShareLoc defines terms to annotate data sets from single molecule localization microscopy, including but not limited to: imaging technique, biological structures or molecules of interest, cell types, experimental condition, labeling method, fixation protocol, etc."^^ . + . + . + . + . + . + . + "relations" . + "AmoebaDB" . + . + . + "t3db" . + "ccdc" . + "^MMP\\d+.\\d+$"^^ . + "ctgov" . + "https://www.ncbi.nlm.nih.gov/homologene/"^^ . + . + . + . + . + . + "CategorialBibliometricData"^^ . + . + . + . + . + . + . + "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources."^^ . + . + . + "Mouse Developmental Stages" . + . + . + . + . + . + "SpBase, is designed to present the results of the genome sequencing project for the purple sea urchin. THe sequences and annotations emerging from this effort are organized in a database that provides the research community access to those data not normally presented through NCBI and other large databases."^^ . + . + . + . + "gwascentral.phenotype" . + . + "GlycoEpitope" . + . + . . - "sbml.level-3.version-2"^^ . - . - . - . - . - . - . - . - . - . - . - "ATCC(dna)" . - . - . - "http://purl.obolibrary.org/obo/STATO_$1"^^ . - . - . - "subject agnostic" . - "Agronomy Ontology" . - . - . -_:Nf42f1ec046d341cc9a6884792076b13b "European Food Safety Authority" . - . - "NeuronDB" . - "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id=$1"^^ . - . - . - . - . - . - "The GPCR NaVa database describes sequence variants within the family of human G Protein-Coupled Receptors (GPCRs). GPCRs regulate many physiological functions and are the targets for most of today's medicines. The acronym NaVa stands for Natural Variant, which means any (non-artificial) variant that occurs in humans."^^ . - . - . - . - "anatomy" . - . - . - "life science" . - "sheeba.samuel@uni-jena.de" . - "http://purl.obolibrary.org/obo/PGDSO_$1"^^ . - . - "false"^^ . - . - "15000"^^ . - . - . - . - "false"^^ . - "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs."^^ . - . - "life science" . - "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge."^^ . - . - "false"^^ . - . - . - . - . - "ontology" . - . - . - "Echinobase" . - "experiment" . - . - . - "eolife" . - "false"^^ . - . - . - "Apple (Malus domestica) defines crop traits and variables to support the standardisation of apple breeding databases providing description of agronomic, morphological, physiological, quality traits, its methods and scales."^^ . - "http://www.w3.org/2008/05/skos-xl#"^^ . - "Gender, Sex, and Sexual Orientation Ontology" . - . - "http://www.bioassayontology.org/bao#BAO_$1"^^ . -_:Na9570be4d12143dc8c7839a5cbde1d74 "info@wikidata.org" . - . - "false"^^ . - . - . - "^[0-9]+$"^^ . - "Computational and Informatics Resources for Glycoscience" . - "http://uri.neuinfo.org/nif/nifstd/nlx_inv_"^^ . - "5ede4273-b26c-4ea4-adb7-3ce294ab3397"^^ . - . - "false"^^ . - . - . - . - . - "A0118748"^^ . - . - "rat" . - . - . - . - . - . - . - . - "16333295"^^ . - . - "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank."^^ . - . - . - "WBbt" . - . - . - . - "phenolexplorer" . - "nxr" . - . - "Vocabulary used in the RDF representation of SBML models."^^ . - . - "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query="^^ . - . - . - "gene" . - "xeni.kechagioglou@lifewatch.eu" . - . - . - "DrugBank Condition" . - . - . - . - . - "Cell Cycle Database is a collection of genes and proteins involved in human and yeast cell cycle"^^ . - "somatic" . - "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"^^ . - . - . - "gene" . - "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms" . - . - . - . - "1"^^ . - . - "false"^^ . - . - "slkbase" . - . - . - "^\\d{4}$"^^ . - . - . - "http://ecoliwiki.net/colipedia/index.php/$1:Gene"^^ . - "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein="^^ . - . - . - "pharmacogenomics" . - "https://www.scopus.com/sourceid/"^^ . - . - . - . - . - "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q="^^ . - . - "false"^^ . - . - "Medical Dictionary for Regulatory Activities" . - . - "https://swbiodiversity.org/seinet/taxa/index.php?taxon="^^ . - . - . - . - . - "Ontology for genetic interval" . - . - . - . - . - . - . - "computer science" . - . - . - . - "false"^^ . - . - . - . - "hathitrust" . - . - "false"^^ . - . - "MEDLINE" . - "maria.taboada@usc.es" . - . - . - . - "drug" . - "https://bioregistry.io/registry/$1" . - . - "http://purl.obolibrary.org/obo/OMO_$1"^^ . - . - "irct" . - . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - "P10636"^^ . - . - . - "chembl.cell" . - . - "oostt" . - . - . - "OMA Protein" . - "ontology" . - . - . - . - . - "^[0-9a-zA-Z]{8}$"^^ . - "B00162"^^ . - "ontology" . - "obo" . - . - "https://cropontology.org/rdf/CO_331:$1"^^ . - . - . - . - "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/KISAO_"^^ . - . - . - "NONCODE v4 Gene" . - . - . - "false"^^ . - . - "KYinno cell lines" . - . - "https://www.ebi.ac.uk/chembl/compound/inspect/$1"^^ . - . - "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns."^^ . - . - "cell lines" . - "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world."^^ . - . - "^\\d{1,5}$"^^ . - . - "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid="^^ . - . + "ICD-10-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States issued by the National Center for Health Statistics (NCHS) and Centers for Medicare & Medicaid Services (CMS)."^^ . + "http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId="^^ . + . + . + . + "false"^^ . + "1755"^^ . + "topdb" . + . + . + "^\\d+$"^^ . + . + "^\\d+$"^^ . + . + . + . + . + "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc."^^ . + . + . + . + . + . + . + . + "true"^^ . + . + . + "^[0-9a-zA-Z]+$"^^ . + "mixs" . + . + "phylogenetics" . + . + "gene" . + . + "KEGG Compound" . + . + . + "taxonomy" . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/PLANA_"^^ . + "UM-BBD_enzymeID" . + . + . + . + . + . + . + . + . + " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."^^ . + "http://www.bind.ca/Action?identifier=bindid&idsearch="^^ . + . + . + . + "https://ensaiosclinicos.gov.br/rg/"^^ . + . + . + "false"^^ . + . + . + "funding agencies" . + "fly" . + . + . + . + . + "true"^^ . + . + . + . + "occupational medicine" . + "tkg" . + . + "^MCDS_L_[a-zA-Z0-9]{1,10}$"^^ . + . + . + "0000215"^^ . + . + . + . + . + . + "00000"^^ . + . + "c"^^ . + . + . + . + . + "Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center."^^ . + "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . + . + "cemo" . + . + "true"^^ . + . + "COB brings together key terms from a wide range of OBO projects to improve interoperability."^^ . + . + . + . + . + "Diagnostic and Statistical Manual of Mental Disorders (4th Edition)" . + "https://www.kegg.jp/entry/"^^ . + . + "Feature Type Thesaurus" . + . + . + "Arabidopsis Information Portal" . + . + "false"^^ . + . + "subtiwiki" . + . + . + "false"^^ . + . + "Animal Genome QTL" . + "cell lines" . + "0000032"^^ . + . + "oridb.sacch" . + "SNR17A"^^ . + . + . + "false"^^ . + "false"^^ . + . + "false"^^ . + . + . + . + "life science" . + . + . + . + "false"^^ . + . + . + . + . + . + "TCTR20230429001"^^ . + . + "UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments. STSs are defined by PCR primer pairs and are associated with additional information such as genomic position, genes, and sequences."^^ . + "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession="^^ . + . + . + . + . + "MC" . + "dentistry" . + . + . + "cognitive neuroscience" . + . + "false"^^ . + . + . + . + "ena" . + "bioinformatics" . + "A type for entries in the Bioregistry's registry." . + "NDFI4Cat Collection" . + . + . + . + . + . + "false"^^ . + . + "31"^^ . + . + . + . + . + . + "ECMDB" . + . + . + "300108/p3934_A-172"^^ . + "Provisional Cell Ontology" . + "umbbd.compound" . + . + . + "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1"^^ . + . + . + "Software"^^ . + "fernanda.farinelli@gmail.com" . + . + . + . + . + "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors."^^ . + "http://www.pathoplant.de/detail.php?accNo="^^ . + . + "https://www.grid.ac/institutes/"^^ . + "github" . + "^\\d{7}$"^^ . + . + "obcs" . + . + . + . + . + . + . + . + . + . + . + "miriam" . + . + "false"^^ . + . + . + "CIViC variant" . + . + . + "false"^^ . + . + . + "genes" . + "^\\d{7}$"^^ . + . + . + . + . + . + . + "https://biopragmatics.github.io/providers/msigdb/$1"^^ . + "http://www.marinespecies.org/aphia.php?p=taxdetails&id="^^ . + "http://ddinter.scbdd.com/ddinter/drug-detail/"^^ . + . + "VFDB Genus" . + . + . + "protein" . + . + "4D Nucleome Data Portal Experiment Replicate" . + . + . + . + . + "^\\d{7}$"^^ . + "PhenX Toolkit" . + . + . + "^\\d{3}$"^^ . + "https://tripod.nih.gov/bioplanet/detail.jsp?pid=bioplanet_$1"^^ . + "obo" . + "The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities."^^ . + . + . + . + . + . + . + . + . + . + . + . + "https://amoebadb.org/amoeba/app/record/gene/$1"^^ . + . + "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature=$1"^^ . + . +_:N58611fcf82194703923654500373e06f "Edd Wilder-James" . . - . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - "gene" . - . - "https://biopragmatics.github.io/providers/goche/"^^ . - . - . - "vfdb.gene" . - . - . - . - . - "^\\d{7}$"^^ . - . - . - "Sebastian Koehler" . - "https://www.ebi.ac.uk/arrayexpress/experiments/"^^ . - "EAWAG Biocatalysis/Biodegradation Database" . - "Internet Engineering Task Force Language Tag" . - . - . - "biology" . - "protonet.cluster" . - . - "0000190"^^ . - . - "5.1"^^ . - "https://animaldiversity.org/accounts/$1"^^ . - . - . - . - "botany" . - . - "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis."^^ . - . - . - "domain" . - . - . - "https://scicrunch.org/resolver/RRID:AGSC_$1"^^ . - . - "ehdaa2" . - "W2741809807"^^ . - . - . - . - . - . - . - . - "genetics" . - . - "https://www.ebi.ac.uk/biosamples/sample/$1"^^ . - "https://bioregistry.io/wikigenes:"^^ . - . - "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with fungal genomes."^^ . - . - . - "ecology" . - "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms."^^ . - . - "subject agnostic" . - "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id="^^ . - "46"^^ . - . - . - . - . - "protein" . - "false"^^ . - "https://web.expasy.org/cellosaurus/cellopub/"^^ . - . - . - . - "false"^^ . - "SNOMEDCT_US" . - . - "Mosquito gross anatomy ontology" . - . - "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012."^^ . - . - . - . - . - . - . - "https://pypi.org/project/$1"^^ . - . - "ecyano.experiment" . - . - . - "Cell line collections (Providers)"^^ . - . - . - . - . - "mod" . - . - . - . - . - . - . - . - . - . - . - . - . - "Ensembl Bacteria" . - . - . - . - "Consensus CDS" . - "http://purl.obolibrary.org/obo/OPMI_$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/MCO_"^^ . - . - "development" . - . - "Registry" . - "false"^^ . - . - . - . - "ontology" . - . - "^EB\\d+$"^^ . - "false"^^ . - . - . - . - . - . - "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER."^^ . - "TreeBASE is a relational database designed to manage and explore information on phylogenetic relationships. It includes phylogenetic trees and data matrices, together with information about the relevant publication, taxa, morphological and sequence-based characters, and published analyses. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, etc."^^ . - . - . - . - . - "small molecule" . - "Yongqun Oliver He" . - "false"^^ . - . - . - "0000586"^^ . - . - . - . - . - "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$"^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - "protein" . - "https://dandiarchive.org/dandiset/$1"^^ . - . - . - "hp" . - "http://addgene.org/"^^ . - . - . - . - . - . - . - . - "depod" . - . - "http://www.kegg.jp/entry/$1"^^ . - . - . - . - . - . - . - . - "gene" . - . - . - . - . - . - . - "Bio-Pesticides DataBase" . - "false"^^ . - . - . - "Identifier for a user in iNaturalist"^^ . - . - "sdis" . - . - . - . - . - "https://www.nsf.gov/awardsearch/showAward?AWD_ID=$1"^^ . - . - "false"^^ . - . - . - "duplication" . - . - . - "degradome" . - "protein" . - "Open Digital Rights Language Ontology" . - . - . - "interaction" . - . - . - . - "go.rule" . - . - . - . - "funcbase.fly" . - "developmental biology" . - . - . - . - "tumor" . - "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology."^^ . - "ontology" . - . - . - . - "biology" . - "Molecular Interaction Database" . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . - "health" . - "^F\\d+$"^^ . - . - "exac.variant" . - "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"^^ . - . - "https://www.sharkipedia.org/traits/$1"^^ . - . -_:Nb4dfa24385e947998230af7585b324a6 "helpdesk@cropontology-curationtool.org" . - . - . - "iceberg.element" . - "genome" . - . - "^\\d+$"^^ . - . - . - "pocketome" . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - "miRBase pre-miRNA" . - "pmp" . - . - . - . - . - "http://purl.obolibrary.org/obo/GNO_"^^ . - . - . - "Matthias Samwald" . - . - . - . - . - "Database of the dielectric properties of biological tissues."^^ . - . - "SABIO-RK" . - "animal husbandry" . - . - . - . - "Documentation of HOGS (Homologous Organs Groups). Contains links to HOGs download, HOGs onthology, HOGs creation, composition, etc."^^ . - . - . - . - "epd" . - . - . - . - "NIH RePORTER" . - . - . - "9"^^ . - "http://purl.obolibrary.org/obo/MI_$1"^^ . - . - "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis."^^ . - "catalog" . - . - . - "Vaccine Ontology" . - "astrophysics and astronomy" . - . - . - "http://www.ebi.ac.uk/cmpo/CMPO_$1"^^ . - "http://purl.obolibrary.org/obo/FIDEO_"^^ . - . - . - . - . - . - . - . - . - "ontology" . - . - . - . - . - . - . - "false"^^ . - . - . - . -_:N7c54b74df1bf4d98878dd82a0b518dd4 "Jonathan Bard" . - "epidemiology" . - "0000006"^^ . - . + . + "false"^^ . + . + "https://www.wikidata.org/wiki/Property:"^^ . + "GWAS Central Study" . + "https://www.ebi.ac.uk/intact/interaction/"^^ . + . + . + "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references antibody products."^^ . + "genecards.geneloc" . + . +_:N8e53bbafb12b465bbef6aa16cd609597 "helpdesk@cropontology-curationtool.org" . + . + . + "^GR\\:\\d+$"^^ . + . + . + "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis."^^ . + . + . + "dbg2introns" . + . + "gene expression" . + . + . + . + . + "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases."^^ . + . + . + . + . + . + . + . + . + "false"^^ . + "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=$1"^^ . + "ToxoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$"^^ . + "life science" . + "life science" . + . + . + "knowledge and information systems" . + . + "01467"^^ . + . + "false"^^ . + "Sequence Read Archive" . + . + . + . + . + "virology" . + "life science" . + . + "http://uri.neuinfo.org/nif/nifstd/$1"^^ . + . + "2.7.1.1"^^ . + . + "CAS (Chemical Abstracts Service) is a division of the American Chemical Society and is the producer of comprehensive databases of chemical information."^^ . + . + . + . + "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references individual images."^^ . + "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . + "sopharm" . + . + . + . + . + . + "agriculture" . + . + "protein" . + "false"^^ . + "false"^^ . + . + . + . + "phenotype" . + "wikipathways.vocab" . + . + . + "life science" . + "spbase" . + . + "pathway" . + . + . + . + . + . + . + . + . + . + . + "community care" . + "https://biopragmatics.github.io/providers/bs/$1"^^ . + . + "^DDInter\\d+$"^^ . + "^[A-Za-z0-9+\\-\\*=#$:().>/\\\\\\[\\]%]+$"^^ . + . + "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot="^^ . + . + . + . + . + "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID="^^ . + "pgx" . + "interactive portal" . + . + "oarcs" . + . + . + "^NONHSAT\\d{6}$"^^ . + . + . + . + "^\\d+$"^^ . + . + . + "runbiosimulations" . + "4019477"^^ . + . + . + "MediaDive Medium" . + _:N2b6feb67a2df4a55a5abd72287a761f9 . + "tRNA Gene Database" . + "Pocketome" . + . + . + "version control" . + "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id=$1"^^ . + "pepbank" . + . + "oct 2016"^^ . + "co_360" . + . + . + "microbiology" . + . + "811"^^ . + . + . + "xeni.kechagioglou@lifewatch.eu" . + "Google Patents" . + . + . + "BirdBase" . + . + "SEQF1003"^^ . + "ecology" . + . + . + . + "false"^^ . + . + . + "http://senselab.med.yale.edu/OdorDB/Data/$1/?db=5"^^ . + . + . + "false"^^ . + . + . + . + . + . + "oci" . + "http://pax-db.org/#!species/$1"^^ . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . + . + . + . + "Jacqueline.Campbell@usda.gov" . + "56586"^^ . + . + . + . + "Chemical Information Ontology" . + . + "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1"^^ . "The TCTR was estabished in 2009 and has been operated by Clinical Research Collaboration Network (CRCN), an organization under the Medical Research Foundation, which is a non-profit organization, and financially supported by Thailand Center of Excellence for Life Sciences (TCELS). CRCN has been retitled the Medical Research Network (MedResNet) since June 15, 2012. (from homepage)"^^ . - . - "https://bioregistry.io/geonames.feature:"^^ . - "ontology" . - . - . - "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1"^^ . - . - . - . - "shareloc" . - . - . - "github.issue" . - . - "fishbase" . - . - "0000288"^^ . - . - . - . - "glycopost" . +_:N216cbdecc2d7444289dbaf0f948d7bb1 "Crop Ontology Helpdesk" . + "GitHub Issue" . + . + . + . + "http://purl.obolibrary.org/obo/YPO_"^^ . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . + . + . + "0002350"^^ . + . + . + . + "602"^^ . + . + . + . + . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1"^^ . + "hivreagentprogram" . + . "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions."^^ . - . - "https://cropontology.org/rdf/CO_359:"^^ . - . - . - . - . - . - . - . - "ontology" . - . - "gene expression" . - "https://pubchem.ncbi.nlm.nih.gov/bioassay/"^^ . - "PAp00000009"^^ . - . - . - "false"^^ . - . - . - "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . - "j.detras@cgiar.org" . - "small molecule" . - . - . - . - "botany" . - "^[A-Z0-9]{4}$"^^ . - "molecule" . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - "https://www.clinicaltrialsregister.eu/ctr-search/search?query="^^ . - "GXA Expt" . - "268"^^ . - . - . - "clinical studies" . - . - . - "An ontology to capture confidence information about annotations."^^ . - . - . - . - "Vertebrate Breed Ontology" . - . - . - . - "false"^^ . - . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1"^^ . - . - . - "Pierre-Yves LeBail" . - . - "https://labsyspharm.github.io/lspci/$1"^^ . - "storedb.file" . - "false"^^ . - . - . - . - . - "2h6o"^^ . - . - . - "PMC" . - . - . - "biology" . - "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . - . - . - "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$"^^ . - . - "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession="^^ . - "dawood@helix.nih.gov" . - "The MIAPA ontology is intended to be an application ontology for the purpose of semantic annotation of phylogenetic data according to the requirements and recommendations of the Minimum Information for A Phylogenetic Analysis (MIAPA) metadata reporting standard. The ontology leverages (imports) primarily from the CDAO (Comparative Data Analysis Ontology), PROV (W3C Provenance Ontology), and SWO (Software Ontology, which includes the EDAM ontologies) ontologies. It adds some assertions of its own, as well as some classes and individuals that may eventually get pushed down into one of the respective source ontologies.\n\nThis ontology is maintained at http://github.com/miapa/miapa, and requests for changes or additions should be filed at the issue tracker there. The discussion list is at miapa-discuss@googlegroups.com. Further resources about MIAPA can be found at the project's main page at http://evoio.org/wiki/MIAPA."^^ . - . - "Rice Genome Annotation Project" . - . - . - "mirnao" . - . - "kegg.glycan" . - . - . - . - "protein" . - . - . - . - "19803"^^ . - . - "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/$1"^^ . - . - . - "^\\d+$"^^ . - . - "preclinical studies" . - . - . - . - "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."^^ . - . - . - "https://bioregistry.io/fbol:"^^ . - "false"^^ . - . - . - . - "Amphibian gross anatomy" . - . - . - . - . - . - "595"^^ . - . - "A comprehensive compendium of human long non-coding RNAs"^^ . - . - . - . - . -_:N99cf0000a4e74a949363596ae1f73f20 "po-discuss@plantontology.org" . - . - . - . - . - "^\\d{7}$"^^ . - . + "false"^^ . + . + . + . + . + . + . + "Identifiers.org Ontology"^^ . + . + "ontology" . + "https://jjj.bio.vu.nl/models/$1"^^ . + "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID="^^ . + _:N28bf638d0ed04a62adc8f194345ca16b . + "A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The timed version of the human developmental anatomy ontology gives all the tissues present at each Carnegie Stage (CS) of human development (1-20) linked by a part-of rule. Each term is mentioned only once so that the embryo at each stage can be seen as the simple sum of its parts. Users should note that tissues that are symmetric (e.g. eyes, ears, limbs) are only mentioned once."^^ . + . + "^[A-Z][a-z][0-9]+$"^^ . + . + . + "neurodegeneration" . + "International Nucleotide Sequence Database Collaboration (INSDC) Run" . + . + "dbsnp" . + "structure" . + . + . + . + . + . + . + . + . + . + "https://polbase.neb.com/polymerases/$1#sequences"^^ . + . + . +_:N87bd32b830b94121b49a5ee2bcc891af "michael.lincoln@va.gov" . + . + . + . + . + . + . + . + . + "200906038218908385"^^ . + "58788"^^ . + . + . + "abcd" . + "The Cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Its scope includes: Immortalized cell lines; naturally immortal cell lines (example: stem cell lines); finite life cell lines when those are distributed and used widely; vertebrate cell line with an emphasis on human, mouse and rat cell lines; and invertebrate (insects and ticks) cell lines. Its scope does not include primary cell lines (with the exception of the finite life cell lines described above) and plant cell lines."^^ . + . + . + "bgee.organ" . + "1"^^ . + "ontology" . + "false"^^ . + . + "^\\w+$"^^ . + . + "http://purl.org/gc/"^^ . + . + . + . + "Michael Riffle" . + . + . + . +_:Nf9f7c3b2293d498c9c5b447a07a5fe53 "tim.vandermeersch@gmail.com" . + "irct" . + "1433C_TOBAC_1_252"^^ . + "https://www.ncbi.nlm.nih.gov/bioproject/?term="^^ . + "ontology" . + . + . + . + . + . + . + "ontology" . + . + . + "data visualization" . + . + . + "ontoneo" . + . + . + "Multum MediSource Lexicon" . + . + "botany" . + "Sugar Kelp trait ontology" . + . + "Cellosaurus Registry" . + "karel.berka@upol.cz" . + "pfam" . + "Erik van Nimwegen" . + "https://w3id.org/babelon/"^^ . + . + "biostudies" . + . + "https://w3id.org/biolink/vocab/$1"^^ . + . + . + "https://mobidb.org/$1"^^ . + . + . + . + . + . + "https://www.internationalgenome.org/data-portal/sample/"^^ . + . + "toxoplasma" . + "gene expression" . + . + . + "N0000001662"^^ . + . + "false"^^ . + "interaction" . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to protein sequence information."^^ . + . + "408"^^ . + "protonet.cluster" . + . + . + . + . + "false"^^ . + "nutritional science" . + . + . + . + "oriental-cds@163.com" . + . + "oryzabase.stage" . + . + . + . + "receptome.family" . + "The Ensembl glossary lists the terms, data types and file types that are used in Ensembl and describes how they are used."^^ . + . + "http://ctdbase.org/detail.go?type=disease&db=MESH&acc="^^ . + "false"^^ . + . + "https://swissmodel.expasy.org/repository/uniprot/$1"^^ . + . + . + "false"^^ . + . + . + . + . + "Peroxibase" . + . + "http://www.pocketome.org/files/$1.html"^^ . + "Project"^^ . + "drugs" . + . + . + . + "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. Produced by the National Library of Medicine, it provides information about diseases, conditions, and wellness issues using non-technical terms and language."^^ . + . + . + "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO="^^ . + "obo" . + "^\\d+$"^^ . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. This collection references groups of genes that have been organised as families."^^ . + . + . + . + . + . + "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/VHOG_"^^ . + . + . + . + "classification" . + "http://www.proteinatlas.org/"^^ . + . + . + . + "MMsINC" . + . + "https://www.rrrc.us/Strain/?x="^^ . + "UPVAR" . + "^\\w+$"^^ . + . + . + "Lycalopex_vetulus"^^ . + "biomedical science" . + . + . + . + . + . + . + "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer."^^ . + . + . + . + . + . + . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . + "16333295"^^ . + . + "true"^^ . + . + . + "life science" . + . + . + . + . + . + "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone="^^ . + "ontology and terminology" . + . + "Carbohydrate Active EnZYmes" . + . + . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + "CUT"^^ . + . + . + . + . + . "0000000"^^ . - . - "ATC_code" . - "Chemspider" . - "A comprehensive proteomics data and process provenance ontology."^^ . - . - . - "https://www.ebi.ac.uk/metagenomics/samples/"^^ . - "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR."^^ . - . - . - "phosphosite.residue" . - . - "https://biopragmatics.github.io/providers/cvx/$1"^^ . - . - "WP732"^^ . - "^D\\d+$"^^ . - "mmp.ref" . - "swisslipid" . - "UTRdb" . - . - . - "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1"^^ . - "recombinase" . - . - . - . - "biosimulators" . - "rna" . - . - "^\\d{7}$"^^ . - "^\\d{7}$"^^ . - . - . - . - . - "Selventa Diseases" . - "obo" . - . - . - . - "true"^^ . - . - . - "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=$1"^^ . - "obo" . - . - "dispositions" . - . - "A repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids."^^ . - . - . - . - "SNOMED_CT_US_2018_03_01" . - . - . - . - "Anne Morgat" . - . - "IPI"^^ . - "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=$1"^^ . - "dna" . - "http://purl.dataone.org/odo/ECSO_"^^ . - . - . - "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - . - "0000047"^^ . - "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1"^^ . - . - "ontology" . - "https://rpcec.sld.cu/en/trials/"^^ . - . - "classification" . - "^RCB\\d+$"^^ . - . - "genome" . - . -_:N60d1d3e7c3a04448a8f402e49be1dc65 "Vivian Lee" . - . - . - . - . - . - "biology" . - . - "sequence" . - . - "taxonomy" . - . - . - . - . - . - . - "dandi" . - . - . - . - . - . - "obo" . - . - . - . - . - . - "EMAPA identifiers refer to developmental stage-independent mouse anatomical features, for instance, EMAPA:35178 resolves to the MGI's Mouse Developmental Anatomy Browser. EMAPS is an extension to EMAPA which introduces terms for different developmental stages of this generic EMAPA entry. EMAPS identifiers are constructed such that they are a concatenation of the EMAPA ID and a Theiler Stage (TS) number. For instance, EMAPA:35178 in TS 23 becomes EMAPS:3517823"^^ . - . - "aro" . - "http://purl.obolibrary.org/obo/HANCESTRO_"^^ . - "false"^^ . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode="^^ . - "ontology" . - "Ontology for Modeling and Representation of Social Entities" . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/IDO_$1"^^ . - "An ontology representation of the LIPIDMAPS nomenclature classification."^^ . - "YBR125c"^^ . - "true"^^ . - "SM_UB-81"^^ . - . - . - . - "http://www.coloncanceratlas.org/search_cell_line?cell_line="^^ . - . - "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data."^^ . - . - "PhosphoSite Protein" . - . - . - . - "chemrof" . - . - . - "3G6A5W338E"^^ . - . - . - . - "https://www.isrctn.com/$1"^^ . - "colao" . - "ena.embl" . - "anatomy" . - . - "microbial" . - "http://virtualflybrain.org/reports/$1"^^ . - "false"^^ . - . - "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^ . - . - . - . - . - . - "^GR\\:\\d+$"^^ . - . - . - . - "http://purl.obolibrary.org/obo/ECTO_$1"^^ . - "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object="^^ . - "false"^^ . - "false"^^ . - "WiCell Research Institute Cell Collection" . - . - "interaction" . - . + . + . + . + . + "CIViC variants are usually genomic alterations, including single nucleotide variants (SNVs), insertion/deletion events (indels), copy number alterations (CNV’s such as amplification or deletion), structural variants (SVs such as translocations and inversions), and other events that differ from the “normal” genome. In some cases a CIViC variant may represent events of the transcriptome or proteome. For example, ‘expression’ or ‘over-expression’ is a valid variant. Regardless of the variant, it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional relevance that is clinical in nature to be entered in CIViC. i.e. There must be some rationale for why curation of this variant could ultimately aid clinical decision making."^^ . + "false"^^ . + . + . + . + . + "XUO" . + "GlycomeDB is the result of a systematic data integration effort, and provides an overview of all carbohydrate structures available in public databases, as well as cross-links."^^ . + "https://web.expasy.org/cellosaurus/cellopub/$1"^^ . + . + "trait" . + "iuphar.ligand" . + . + "^[A-Za-z0-9]+$"^^ . + "R00100"^^ . + "Pigeonpea Trait Dictionary in template v5 - ICRISAT - July 2015"^^ . "systemic neuroscience" . - . - "prodom" . - . - . - . - "molecular infection biology" . - "false"^^ . - "wwf.ecoregion" . - . - "Peter Midford" . - "false"^^ . - "PharmGKB Gene" . - . - "bioinformatics" . + . + . + . + "Ensembl Fungi, the Ensembl database for accessing genome-scale data from fungi." . + . + . + "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains."^^ . + "false"^^ . + . + "https://lincs.hms.harvard.edu/db/antibodies/$1"^^ . + . + . + "^\\w+$"^^ . + . + "dbest" . + . + "knowledge and information systems" . + . + "00000008"^^ . + . + . + "eukaryotic" . + . + . + . + . + . + "domain" . + "https://www.ncbi.nlm.nih.gov/research/cog/pathway/"^^ . + . + . + . + "false"^^ . + . + . + "https://depmap.org/portal/cell_line/"^^ . + . + "false"^^ . + . + "obo" . + "F-SNP" . + . + "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + "Mihail Anton" . + . + . + . + "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data."^^ . + "false"^^ . + . + "ontology" . + "https://pharmacodb.ca/datasets/$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OlatDv_$1"^^ . + . + . + "Joshua Orvis" . + "^\\d{7}$"^^ . + "registry" . + "software and information systems" . + . + . + . + . + . + . + . + . + . + . + "variants" . + . + . + "https://www.isrctn.com/"^^ . + . + . + . +_:N8c73ba65128d4714985e9de16a287c3a "af8d@nih.gov" . + . + . + . + "Terminologia Embryologica" . + "ChemDB" . + . + _:N9c7ccd46735d4414b9be37bf3980a722 . + "development" . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "false"^^ . + . + "virology" . + "0000254"^^ . + "SMP0000219"^^ . + . + . + . + "KEGG Drug" . + "^DG\\d+$"^^ . + . + . + . + . + "has URI pattern" . + . + . + . + "structure" . + . + "http://purl.bioontology.org/ontology/VANDF/$1"^^ . + . + "false"^^ . + "^[a-z_A-Z0-9]+$"^^ . + . + . + . + . + . + . + "sibo" . + . + . + . + "obo" . + . + . + . + . + "40000617"^^ . + "genetics" . + . + . + . + . + "jws" . + . + "doid" . + "disease" . + . + "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix."^^ . + "The G protein-coupled receptor database (GPCRDB) collects, large amounts of heterogeneous data on GPCRs. It contains experimental data on sequences, ligand-binding constants, mutations and oligomers, and derived data such as multiple sequence alignments and homology models."^^ . + "phenomics" . + "chiro" . + . + . + "ontology" . + . + "genomics" . + . + "http://scop.berkeley.edu/sid="^^ . + "NCBI Gene Expression Omnibus" . + "glytoucan" . + . + . + "The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels; Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels."^^ . + "https://biomedit.ch/rdf/sphn-ontology/sphn#"^^ . + "6978836"^^ . + "GRSDB is a database of G-quadruplexes and contains information on composition and distribution of putative Quadruplex-forming G-Rich Sequences (QGRS) mapped in the eukaryotic pre-mRNA sequences, including those that are alternatively processed (alternatively spliced or alternatively polyadenylated). The data stored in the GRSDB is based on computational analysis of NCBI Entrez Gene entries and their corresponding annotated genomic nucleotide sequences of RefSeq/GenBank."^^ . + . + . + . + . + . + "SEO is a reference ontology for modelling data about scientific events such as conferences, symposioums and workshops."^^ . + . + . + "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1"^^ . + "https://www.hipsci.org/lines/#/lines/$1"^^ . + "0000072"^^ . + "Matt Yoder" . + . + "57-27-2"^^ . + "Networked Knowledge Organization Systems/Services/Structures" . + . + "^\\d{7}$"^^ . + . + . + . + . + "https://www.datanator.info/metabolite/$1"^^ . + "ontology" . + . + . + . + . + . + . + . + . + . + . + . + . + . + "25782"^^ . + . + . + . + . + . + . + . + . + "Christine.Pourcel@u-psud.fr" . + . + . + "0001410"^^ . + "https://w3id.org/faircookbook/$1"^^ . + . + "false"^^ . + "ICD" . + . + . + . + . + . + "https://www.storedb.org/?STOREDB:DATASET"^^ . + . + . + . + . + . + . + "genomics" . + . + . + . + . + "dbprobe" . + "Human Brain Atlas" . + "Health Canada, through its Clinical Trials Database, is providing to the public a listing of specific information relating to phase I, II and III clinical trials in patients. The database is managed by Health Canada and provides a source of information about Canadian clinical trials involving human pharmaceutical and biological drugs. [from website]"^^ . + . + "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis."^^ . + "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10)."^^ . + . + . + . + . + "BTO" . + . + "false"^^ . + "biomedical science" . + . + . + . + . + "Biological Collections Ontology" . + "ontology" . + "5282"^^ . + . + "obo" . + . + . + . + "genome" . + . + . + . + . + "SNOMEDCT_US" . + "Health Data Research Innovation Gateway" . + "nje5@georgetown.edu" . + . + . + . + "ontology" . + . + "https://doulix.com/biomodules/"^^ . + . + . + . + . + . + "ontology" . + "http://uri.neuinfo.org/nif/nifstd/nlx_inv_"^^ . + "expressed sequence tag" . + . + "ontology and terminology" . + . + "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + "false"^^ . + "https://cropontology.org/rdf/CO_325:"^^ . + "bionumbers" . + "The COVID-19 Infectious Disease Ontology (IDO-COVID-19) is an extension of the Infectious Disease Ontology (IDO) and the Virus Infectious Disease Ontology (VIDO). IDO-COVID-19 follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used to represent infection by the SARS-CoV-2 virus strain, and the associated COVID-19 disease."^^ . + . + . + . + "Hölzel Diagnostika" . + "1046"^^ . + "ECU03_0820i"^^ . + . + . + "REFSEQ_PROT" . + "CGNC" . + "A database for Triticeae and Avena gene symbols."^^ . + . + . + . + . + . + . + . + "mutant strain" . + . + . + . + . +_:N22f04e226201488a9f275ba78ac9c56b "Pat Brooks" . + . + . + . + . + "human" . + . + "false"^^ . + "NLXBR covers brain regions from the PHT00 macaque parcellation, Paxinos, Huang, and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999)."^^ . + . + "^\\d+$"^^ . + "nmrshiftdb2" . + . + . + "false"^^ . + . + "100"^^ . + . + . + . + "PAp00000009"^^ . + "^RPCEC\\d+$"^^ . + "http://senselab.med.yale.edu/ORDB/Data/"^^ . + . + "https://bioregistry.io/panorama:"^^ . + . + "TriTrypDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + "ontology" . + "clinicaltrials" . + "https://data.terra.bio/ga4gh/drs/v1/objects/"^^ . + . + . + . +_:Nfd4722f4f2fc4fdb85afda178e8669b4 "eVOC mailing list" . + . + . + . + . + . + . + . + . + . + "Cellosaurus identifeirs for publications, like Pubmed"^^ . + . + . + . + . + "reagents" . + . + "obo" . + . + "preclinical studies" . + "inaturalist.place" . + . + "Affymetrix Probeset" . + . + . + . + . + "false"^^ . + "^\\d{7}$"^^ . + "^\\d{7}$"^^ . + . + "nlfff" . + . + . + . + . + "040000"^^ . + "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus)."^^ . + "iNaturalist Place" . + "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$"^^ . + . + "0000009"^^ . + . + . + . + . + "seed" . + "http://nava.liacs.nl/cgi-bin/nava.py?id=$1"^^ . + . + . + "alleles" . + "false"^^ . + "Drosophila Phenotype Ontology" . + . + . + . + "IUPHARfam" . + . + . + "propreo" . + "Oat ontology" . + "An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings."^^ . + . + . + "biomedical science" . + . + . + "https://pk-db.com/data/$1"^^ . + "http://purl.obolibrary.org/obo/OGSF_$1"^^ . + "ontology" . + . + . + . + . + . + . + . + "Sample processing and separation techniques" . + "82"^^ . "DICOM Controlled Terminology"^^ . - . - . - "false"^^ . - . - . - . - . - . - "false"^^ . - "secretariat@eol.org" . - "false"^^ . - . - "SubtiWiki is a scientific wiki for the model bacterium Bacillus subtilis. It provides comprehensive information on all genes and their proteins and RNA products, as well as information related to the current investigation of the gene/protein. \r\nNote: Currently, direct access to RNA products is restricted. This is expected to be rectified soon."^^ . - . - . - . - . - "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features."^^ . - "https://horizondiscovery.com/en/search?searchterm="^^ . - . - . - "medicine" . - . - . - "^\\d+$"^^ . - . - "https://bioregistry.io/smiles:"^^ . - . - "subtilist" . - . - "PRIDE Controlled Vocabulary" . - . - "Nematode Expression Pattern DataBase" . - "https://bioregistry.io/resolve/github/issue/$1"^^ . - . - . - "An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow)."^^ . - "CoVoc Coronavirus Vocabulary" . - . - . - "http://usefulinc.com/ns/doap#$1"^^ . - . - . - "Jesper Friis" . - . - . - . - . - . - . - "^[A-Za-z0-9]+$"^^ . - . - . - "http://genomics.senescence.info/genes/details.php?id="^^ . - "false"^^ . - "life science" . - "NucleaRDB" . - "itmctr" . - . - "interaction" . - "f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a"^^ . - . - . - . - . - . - . - "obv" . - "ontology and terminology" . - . - "Assembly" . - "MSH2010_2010_02_22" . - . - . - "interaction" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "life science" . - "http://purl.uniprot.org/annotation/VAR_$1"^^ . - "demographics" . - . - "protein" . - . - . - "http://purl.obolibrary.org/obo/RO_$1"^^ . - "http://ciliate.org/index.php/feature/details/"^^ . - . - . - . - . - "transposon family" . - . - . - . - . - "https://lincs.hms.harvard.edu/db/proteins/$1"^^ . - "http://uri.neuinfo.org/nif/nifstd/nlx_organ_"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/SIBO_"^^ . - . - . - . - . - . - "false"^^ . - "data management" . - . - . - . - "exo" . - "true"^^ . - . - . - "analytical chemistry" . - . - . - . -_:N87ad6811330e431f950b1e30885e91e2 "helpdesk@cropontology-curationtool.org" . - "false"^^ . - . - "nmrCV is a controlled vocabulary to deliver standardized descriptors for the open mark-up language for NMR raw and spectrum data, sanctioned by the metabolomics standards initiative msi."^^ . - . - . - "biomedical science" . - . - . - . - "0000000"^^ . - . - "https://biopragmatics.github.io/providers/goche/$1"^^ . - . - "kegg.module" . - "http://uri.neuinfo.org/nif/nifstd/nlx_dys_"^^ . - . - "faseb list" . - . - . - "ontology" . - "Simple Modular Architecture Research Tool" . - . - "^PRJ[DEN][A-Z]\\d+$"^^ . - . - . - "obo" . - . - . - . - "Cambridge Structural Database" . - . - "Lipid Ontology" . - "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF."^^ . - "https://catalog.hathitrust.org/Record/$1"^^ . - . - . - . - . - "taxonomy" . - . - "ypo" . - . - . - "BridgeDb Vocabulary" . - . - . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=$1"^^ . - "cdna" . - . - . - . - "Coconut ontology" . - . - "Identifiers.org Registry" . - "Bioregistry Collections" . - "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id="^^ . - . - . + "life science" . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/bioproject/?term=$1"^^ . + . + . + "nlx.chem" . + . + "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy."^^ . + "chemical" . + . + . + . + "false"^^ . + . + . + . + "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:$1"^^ . + "The Probes & Drugs portal (P&D) is a hub for the integration of high-quality bioactive compound sets enabling their analysis and comparison. Its main focus is on chemical probes and drugs but it also includes additional relevant sets from specialist databases/scientific publications, and vendor sets. Upon these, established bioactive chemistry sources (such as ChEMBL, BindingDB, Guide To Pharmacology, DrugCentral or DrugBank) are utilized for compounds' biological annotation."^^ . + . + . + "domain" . + . + . + . + . + . + . + . + "1.1.1.1"^^ . + . + "http://www.bioguo.org/AnimalTFDB/family.php?fam="^^ . + . + "Minimal Viable Identifier" . + "A database-specific registry supporting curation in the Gene Ontology" . + . + . + "false"^^ . + "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=$1"^^ . + . + "Statistical Torsional Angles Potentials" . + . + "4dn.biosource" . + "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/$1"^^ . + "A formal represention for drug-drug interactions knowledge."^^ . + . + "https://biopragmatics.github.io/providers/bs/"^^ . + "https://www.sharkipedia.org/trends/$1"^^ . + . + . + . + . + "0000204"^^ . + "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)."^^ . + . + "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1"^^ . "EC-CODE" . - "euclinicaltrials" . - "CCLE_867"^^ . - "E-cyanobacterium experiments is a repository of wet-lab experiments related to cyanobacteria. The emphasis is placed on annotation via mapping to local database of biological knowledge and mathematical models along with the complete experimental setup supporting the reproducibility of the experiments."^^ . - "PDBsum; at-a-glance overview of macromolecular structures" . - "Radiation Biology Ontology" . - . - . - "PDB ligand" . - . - "^[0-9]{9}$"^^ . - . - . - "http://www.geneontology.org/formats/oboInOwl#$1"^^ . - "^Y[A-Z]{2}\\d+[CW]$"^^ . - . - . - "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed."^^ . - . - . - "MF_01400"^^ . - . - "cytology" . - "^\\d+\\w?$"^^ . - . - . - . - . - . - "genomics" . - "chemistry" . - . - . - . - . - "SNOMEDCT_US_2021_03_01" . - . - . - . - . - . - . - . - "ontology" . + "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included."^^ . + . + "lbctr" . + . + . + . + "CHEBI" . + . + . + "mgnify.proj" . + "obo" . + "https://commonchemistry.cas.org/detail?cas_rn=$1"^^ . + "^\\d+$"^^ . + "metabolomics" . + . + . + . + . + "allergen" . + . + . + . + "Selventa Diseases" . + . + . + . + "NXP" . + "ontology" . + "subject agnostic" . + "0000712_1"^^ . + . + . + "https://www.jax.org/strain/$1"^^ . + "http://purl.obolibrary.org/obo/PD_ST_$1"^^ . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OBCS_$1"^^ . + . + "drug metabolism" . + . + . + . + . + . + "SNOMEDCTCT" . + . + "stato" . + . + . + . + . + . + "http://www.weizmann.ac.il/molgen/loqate/gene/view/"^^ . + "gene" . + . + "https://www.vmh.life/#gene/"^^ . + . + "human disease model" . + . + . + . + . + "Collection" . + "false"^^ . + . + . + . + . + "Mammalian Phenotype Ontology" . + . + "http://purl.obolibrary.org/obo/SEP_"^^ . + "false"^^ . + . + . + . + . + . + "Protein and Associated NucleotideDomains with Inferred Trees" . + . + "https://www.atcc.org/products/"^^ . + . + . + . + . + "structural biology" . + . + "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/"^^ . + "ECOLI:CYT-D-UBIOX-CPLX"^^ . + . + . + . + . + "^\\S+$"^^ . + . + "OpenAlex" . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "http://www.bindingdb.org/compact/$1"^^ . + "rna" . + . + . + "BDGP insertion DB" . + "http://www.pseudomonas.com/feature/show/?locus_tag=$1"^^ . + . + "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information."^^ . + . + . + . + "An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc."^^ . + "https://www.webofscience.com/wos/woscc/full-record/WOS:"^^ . + "KEGG_PATHWAY" . + . + . + "gpcrdb" . + "The Saccharomyces Genome Database (SGD) project collects information and maintains a database of the molecular biology of the yeast Saccharomyces cerevisiae."^^ . + . + . + . + "LipidBank is an open, publicly free database of natural lipids including fatty acids, glycerolipids, sphingolipids, steroids, and various vitamins."^^ . + . + . + "cvx" . + "DBMET02292"^^ . + "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/$1"^^ . + "Online Mendelian Inheritance in Man" . + . + "Pierre-Alain Binz" . + "^[A-Z\\-]+$"^^ . + . + "ZFA description."^^ . + . + "dron" . + . + . + . + . + . + "1"^^ . + "ontology" . + . + . + "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms."^^ . + . + . + . + . + . + . + "dna" . + "MicrobeamManipulation"^^ . + "cellimage" . + "extraction_set"^^ . + . + "0000027"^^ . + . + . + "https://bioregistry.io/iceberg.ime:"^^ . + . + . + . + . + "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id=$1"^^ . + "bsg-000052"^^ . + . +_:N7c0a181c44b94668b383a25b019a1108 "heinrich.herre@imise.uni-leipzig.de" . + . + . + . + "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1"^^ . + . + . + "General Multilingual Environmental Thesaurus" . + "DDB0191090"^^ . + "false"^^ . + . + "false"^^ . + "^\\d{7}$"^^ . + . + . + . + . + "false"^^ . + "^\\d{7}$"^^ . + . "version control" . - . - . - "https://datanator.info/reaction/$1"^^ . - "https://ror.org/"^^ . - _:N8b6898a7af184960a90f42a99249e6c8 . - . - . - "http://w3id.org/nkos/$1"^^ . - "ontology" . - . - . - . + "0000208"^^ . + "NodeShape"^^ . + . + . + "false"^^ . + "biomedical science" . + . + "regulation" . + . + . + "Karel Berka" . + "Harry E. Pence" . + "^PTN\\d{9}$"^^ . + . + "developmental biology" . + "false"^^ . + . + "gmd" . + . + . + . + . + . + . + . + . + "biomedical science" . + "http://purl.obolibrary.org/obo/PCO_"^^ . + . + "^[a-zA-Z0-9_\\.]+$"^^ . + "ontology" . + . + . + . + "life science" . + "https://www.ncbi.nlm.nih.gov/clinvar/variation/"^^ . + . + . + . + "anatomy" . + . + . + . + . + "false"^^ . + . + "0000004"^^ . + . + "1784"^^ . + . + "http://www-bionet.sscc.ru/sitex/index.php?siteid=$1"^^ . + "transcriptomics" . + . + . + "proteomics" . + "sdgio" . + . + . + "false"^^ . + . + . + . + . + "scop.sun" . + "60141"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + "http://edamontology.org/topic_$1"^^ . + . + . . - "^[A-Za-z_0-9]+$"^^ . - "life science" . - . - . - "1.10.8.10"^^ . - . - . - "NCBI Registry" . - "WBls" . - . - . - "environmental science" . - . - . - . - . - . - . - . - . - "false"^^ . - . - "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" . - . - . - . - . -_:N7601a7cf89f14dbb930c2ae48240994c "Bgee team" . - . - . - "Chemical Analysis Ontology" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Mark Gerstein" . - . - . - . - "emapa" . - "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym="^^ . - . - "A controlled vocabulary to support the study of transcription in the primate brain"^^ . - . - . - "macie" . - "https://ecocyc.org/gene?id=$1"^^ . - . - . - . - . - . - "chemistry" . - "false"^^ . - . - "http://purl.obolibrary.org/obo/TGMA_$1"^^ . - . - "biomedical science" . - "HL7 External Code Systems are stored within the greater OID system" . - . - . - "Medical Action Ontology" . - "embryo" . - . - . - "https://www.scopus.com/affil/profile.uri?afid=$1"^^ . - . - "life science" . - "This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase."^^ . - . - . - "Yongqunh He" . -_:N0832d90b503b48f08260e88fa8495d79 "j@deltaflow.com" . - . - "false"^^ . - . - "https://cryptodb.org/cryptodb/app/record/gene/$1"^^ . - . - "http://www.ars.usda.gov/research/publications/publications.htm?seq_no_115="^^ . - "metnetdb" . - . - "pathway" . - "true"^^ . - "iev" . - "oarcs" . - . - "The FAO Statistics Team (NFISS) of Fisheries and Aquaculture Division collates world capture and aquaculture production statistics at either the species, genus, family, or higher taxonomic levels in 3,169 statistical categories (2022 data release) referred to as species items. ASFIS list of species includes 13,417 species items selected according to their interest or relation to fisheries and aquaculture. For each species item stored in a record, codes (ISSCAAP group, taxonomic and 3-alpha) and taxonomic information (scientific name, author(s), family, and higher taxonomic classification) are provided. An English name is available for most of the records, and about one third of them have also a French and Spanish name. Information is also provided about the availability of fishery production statistics on the species item in the FAO databases. (from homepage)"^^ . - . - "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."^^ . - . - . - "^\\d+$"^^ . - "RID1"^^ . - "Data Object Service" . - . - . - . - . - "2000191"^^ . - . - "http://purl.org/spar/pwo/$1"^^ . - . - "https://www.wikidata.org/wiki/Property:$1"^^ . - . - . - . - . - . - "ontology" . - "^[A-Z0-9*:]+$"^^ . - . - "UniProtKB-SubCell" . - . - "2404"^^ . - . - . - "false"^^ . - "Wasila Dahdul" . - "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name="^^ . - "21552"^^ . - . - . - . - "http://www.chemspider.com/Chemical-Structure.$1.html"^^ . - . - "Jesualdo Tomás Fernández-Breis" . - "^\\d{7}$"^^ . - "SpBase" . - "Human Brain Atlas" . - . - "^CCDS\\d+\\.\\d+$"^^ . - . - "Ath_AT1G01030.1"^^ . - . - "bsu:BSU01340"^^ . - . - . - . - "NIFSTD" . - "epidemiology" . - . + . + . + . + . + . + . + . + . + "adenovirus" . + . + . + . + . + . + . + "ontology" . + "protclustdb" . + "Chemistry resources"^^ . + . + . + . + "Michael K. Gilson" . + "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id="^^ . + "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN=$1"^^ . + "dermatology" . + "UniProtKB entries are tagged with keywords that can be used to retrieve particular subsets of entries."^^ . + . + . + . + . + "obo" . + "HGNC gene family" . + . + . + . + . + . + "gene" . + "http://www.crop2ml.org/cropmdb/"^^ . + . + "A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources"^^ . + . + . + "bork@embl.de" . + . + "A Semantic Web Rule Language Combining OWL and RuleML" . + . + . + "Cellular Phenotypes" . + "CAS_RN" . + "protein" . + "https://cropontology.org/rdf/CO_321:$1"^^ . + . + . + "obo" . + . + . + "life science" . + . + . + . + . + "false"^^ . + . + . + "Glyma0021s00410"^^ . + . + "Protein Interaction Network Analysis" . + "Higher-level classifications of COG Pathways"^^ . + . + . + . + . + "https://github.com/prefixcommons/biocontext" . + . + . + . + "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to protein-level information, providing a list of phosphorylation sites for each protein in the database."^^ . + . + . + . + . + "bioinformatics" . + "insertion" . + "Terms from the source appear in the target resource" . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "ontoavida" . + . + . + . + . + . + "The Pathogen Transmission Ontology describes the tranmission methods of human disease pathogens describing how a pathogen is transmitted from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles."^^ . + . + . + . + . + "PolBase" . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components."^^ . + "false"^^ . + "Dendritic cell" . + . + "ShiBASE" . + . + "A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies)."^^ . + . + "biomedical science" . + . + "hsapdv" . + "1001"^^ . + . + . + . + . + "PubMed" . + . + . + . + . + . + . + . + "CA981206459"^^ . + "Logical Observation Identifiers Names and Codes" . + . + . + . + . + "https://licebase.org/?q="^^ . + . + . + . + "Support Email" . + . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes."^^ . + . + "false"^^ . + . + "true"^^ . + . + . + . + "Oryzabase Gene" . + "http://purl.obolibrary.org/obo/MAO_"^^ . + . + . + . + . + . + "false"^^ . + . + . + . + . + . "false"^^ . - "http://bigg.ucsd.edu/models/"^^ . - . - . - "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus."^^ . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - _:N8b5f7ad63b6044cf8a17143270c8cbf1 . - . - . - "sequence" . - "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . - . - . - . - "http://scicrunch.org/resolver/SCR_"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - . - "ACM1_HUMAN"^^ . - . - . - . - "biodiversity" . - . - . - "^\\w+$"^^ . - . - "Organism supplier which collects Drosophila stocks from laboratories all over the world, maintains them, and provides them to researchers upon request. [from RRID]"^^ . - "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products."^^ . - "https://bioregistry.io/genecards.genenote:"^^ . - "https://www.alliancegenome.org/accession/$1"^^ . - . - . - "0000050"^^ . - . - "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id=$1"^^ . - . - "BugBase Expt" . - . - "single nucleotide polymorphism" . - "false"^^ . - "feature"^^ . - . - "protein" . - "doi" . - . - "002368"^^ . - . - . - "flopo" . - . - . - . - . - . - . - . - "true"^^ . - . - "Oryzabase Mutant" . - "Influenza Ontology" . - . - . - . - . - "1426686"^^ . - . - . - . - . - "TOKU-E Cell-culture Database" . - . - . - . - . - "chemistry" . - . - . - . - . - . - "0002999"^^ . - . - . - . - . - "^[A-Z-_0-9]+$"^^ . - . - "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes."^^ . - . - "hdr" . - . - . - . - . - . - "leafsnap" . - . - "Spectra Hash Code" . - . - . - . - "biorxiv" . - "The UniProt Archive (UniParc) is a database containing non-redundant protein sequence information from many sources. Each unique sequence is given a stable and unique identifier (UPI) making it possible to identify the same protein from different source databases."^^ . - . - "^\\d{5}$"^^ . - "david.wishart@ualberta.ca" . - "antibodyregistry" . - . - "agrkb" . - "^\\d+$"^^ . - . - "http://purl.obolibrary.org/obo/FBcv_$1"^^ . - "Don Gilbert" . - . - "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."^^ . - "Jason E. Stajich" . - . - . - "^\\d{7}$"^^ . - . - . - "CLV_MEL_PAP_1"^^ . - "MIRT000002"^^ . - . - . - "toxoplasma" . - . - . - . - . - . - . - . - . - "https://www.uniprot.org/tissues/"^^ . - . + . + . + . + . + "true"^^ . + "^\\d+$"^^ . + . + . + "transport and kinetic data" . + . + . + "KEGG-path" . + . + . + "false"^^ . + "http://www.kegg.jp/entry/$1"^^ . + . + . + "Open Digital Rights Language Ontology" . + . + . + "false"^^ . + . + . + . + . + "Selventa legacy protein family namespace used with the Biological Expression Language"^^ . + . + "Coverage of the terminology appearing in JMLA was extended with terms from MeSH, NCI Thesaurus (NCI), Emtree, the HTA Database Canadian Repository [international repository for health technology assessment], and Robert Sandieson's synonym ring for research synthesis. Collected terms were enriched with terms from the NCI Metathesaurus. Variants include synonyms for preferred terms, singular and plural forms, and American and British spellings. Definitions, if they exist, are mainly from MeSH, NCI, Emtree, and medical dictionaries."^^ . + . + . + . + . + "^\\d+$"^^ . + "^\\d{7}$"^^ . + . + . + "false"^^ . + "Publishing Workflow Ontology" . + . + . + "life science" . + . + . + "agriculture" . + "SNOMED" . + "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references compounds."^^ . + . + "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"^^ . + . + "false"^^ . + . + . + "Cell line collections (Providers)"^^ . + . + . + . + . + . + "structural biochemistry" . + . + . + . + "blast" . + . + "http://www.lipidmaps.org/data/LMSDRecord.php?LMID=$1"^^ . + "false"^^ . + . + . + . + . + "false"^^ . + "lipid" . + . + . + "rat" . + . + "systems biology" . + . + "small molecule" . + . + "cgd" . + "VegBank is the vegetation plot database of the Ecological Society of America's Panel on Vegetation Classification. VegBank consists of three linked databases that contain (1) vegetation plot records, (2) vegetation types recognized in the U.S. National Vegetation Classification and other vegetation types submitted by users, and (3) all plant taxa recognized by ITIS/USDA as well as all other plant taxa recorded in plot records. Vegetation records, community types and plant taxa may be submitted to VegBank and may be subsequently searched, viewed, annotated, revised, interpreted, downloaded, and cited. "^^ . + . + . + . + "life science" . + . + . + . + . + "http://sweetontology.net/matrMineral/$1"^^ . + . + "medicine" . + "functional genomics" . + "Anita Bandrowski" . + . + . + . + . + . + "^DBSALT\\d{6}$"^^ . + . + "http://www.onto-med.de/ontologies/gfo.owl#$1"^^ . + . + "http://purl.obolibrary.org/obo/ARO_"^^ . + . + . + "ontology" . + . + . + . + . + . +_:N302b31c103cb46c785d4f40b23c155e9 "ICARDA Ethiopia" . + "GitHub Pull Request" . + . + . + . + . + "rna" . + "PUBCHEM_CID" . + . + . + . + . + . + . + "structure" . + . + . + "cell" . + "false"^^ . + . + . + "false"^^ . + "0000060"^^ . + "GR:0080039"^^ . + . + . + . + "Collection of cell lines by Tohoku University. This includes transplantable animal cell lines, such as Yoshida sarcoma and rat ascites hepatoma (AH series) cell lines as well as human, murine cell lines and hybridoma cells."^^ . + "FAIRSharing" . + "^\\w+(\\_)?\\d+(\\.\\d+)?$"^^ . + . + . + . + . + . + . + "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project."^^ . + . + _:Neabecefb91604f08872b21ea41a4ec75 . + "protein" . + "rna" . + . + "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ="^^ . + . + . + "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_="^^ . + "https://cropontology.org/rdf/CO_346:"^^ . + "rbrinkman@bccrc.ca" . + . + "obo" . + . + . + . + "6b1"^^ . + . + . + "Alzheimer Gene Database" . + . + "false"^^ . + "InterPro" . + "10142"^^ . + "http://purl.obolibrary.org/obo/FLU_"^^ . + . + . + . + . + . + . + . + "https://www.ebi.ac.uk/complexportal/complex/$1"^^ . + "^[0-9]+$"^^ . + "gene" . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid="^^ . + . + "http://classyfire.wishartlab.com/tax_nodes/C$1"^^ . + . + . + "^\\d+$"^^ . + . + . + "^(([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]))|(URS[0-9A-F]{10}(_[0-9]+){0,1})|(EBI-[0-9]+)$"^^ . + . + "life science" . + . + . + "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance."^^ . + "histology" . + . + . + . + "false"^^ . + "https://bioregistry.io/lrg:"^^ . + . + . + . + "^[A-Z]{6}(\\d{2})?$"^^ . + . + . + "KEGG.COMPOUND" . + . + . + "joerg.overmann@dsmz.de" . + "0000400"^^ . + "biodiversity" . + . + . + "ontology" . + . + . + . + . + "https://europepmc.org/article/ppr/$1"^^ . + . + "false"^^ . + . + . + "109082"^^ . + . + "21877"^^ . + . + "jupp@ebi.ac.uk" . + . + . + . + "http://purl.obolibrary.org/obo/APOLLO_SV_$1"^^ . + "ConoServer is a database specialized in the sequence and structures of conopeptides, which are peptides expressed by carnivorous marine cone snails."^^ . + . + "ontology" . + . + . + "icf" . + . + . + . + . + . + "KEGG GENES is a collection of gene catalogs for all complete genomes and some partial genomes, generated from publicly available resources."^^ . + "life sciences" . + . + . + . + . + . + . + . + . + "true"^^ . + . + "MSBNK-IPB_Halle-PB000166"^^ . + . + . + "The NMR Restraints Grid contains the original NMR data as collected for over 2500 protein and nucleic acid structures with corresponding PDB entries. In addition to the original restraints, most of the distance, dihedral angle and RDC restraint data (>85%) were parsed, and those in over 500 entries were converted and filtered. The converted and filtered data sets constitute the DOCR and FRED databases respectively."^^ . + . + "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_"^^ . + . + . + . + . + . + "http://biohackathon.org/resource/faldo#"^^ . + . + . + . + "biochemistry" . + . + "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=$1"^^ . + "a.kikhney@embl-hamburg.de" . + . + "agsc" . + "Gene Location" . + . + . + . + . + "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)."^^ . + . + . + . + . + . + . + "go.ref" . + . + . + . + . + "Fyler" . + "obo" . + "complexportal" . + . + . + . + "SpliceNest" . + . + . + . + . + "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . + . + "https://arxiv.org/abs/"^^ . + "Vertebrate Breed Ontology" . + "sequence" . + . + "14362"^^ . + . + . + "^\\d{7}$"^^ . + "medicine" . + . + "SEED Reactions" . + "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=$1"^^ . + . + . + "Selventa Complexes" . + "https://bioregistry.io/metaregistry/scholia/"^^ . + . + . + "^\\d{6}$"^^ . + . + . + "xenopus" . + . + "https://sumlineknowledgebase.com/?page_id="^^ . + . + "molecule" . + "RIKEN Bioresource Center Cell Bank" . + . + . + "pubchem_id" . + . + . + . + "false"^^ . + . + "health science" . + . + . + . + . + "obo" . + . + "http://www.fairsharing.org/ontology/subject/SRAO_"^^ . + . + . + . + . + . + . + . + "http://www.co-ode.org/ontologies/galen#"^^ . + . + . + . + . + . + "FCB005"^^ . + . + . + "An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF."^^ . + . + . + "https://abrc.osu.edu/stocks/number/SALK_$1"^^ . + . + "https://www.ribocentre.org/docs/"^^ . + "phrr" . + "cryopreserved" . + "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname="^^ . + . + . + "https://bioregistry.io" . + . + "chemidplus" . + . + . + . + . + "false"^^ . + . + . + "myco.smeg" . + "false"^^ . + "The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI)."^^ . + . + "false"^^ . + "P00266"^^ . + . + . + . + . + "natural science" . + . + . + . + "EMD-1001"^^ . + . + . + . + . + "life science" . + . + . + . + . + . + "65"^^ . + . + . + "proteomics" . + . + . + . + . + . + "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder."^^ . + . + "nucleotide" . + . + . + . + "^SCV\\d+(\\.\\d+)?$"^^ . + . + "SNOMEDCT_US_2018_09_01" . + "https://www.signalingpathways.org/datasets/dataset.jsf?doi=$1"^^ . + . + . + "false"^^ . + "life science" . + . + . + . + . + "^\\d{8}$"^^ . + . + . + . + "emea" . + . + . + "PhosphoSite Residue" . + . + . + . + . + . + "EasyChair Call for Paper" . + . + . + . + . + "imp10873"^^ . + "pubchem.substance" . + "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N"^^ . + . + "tngb" . + . + "ChEMBL" . + . + "INN_ID" . + "Elucidating the mechanism of toxicity is crucial in drug safety evaluations. TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO focuses on liver toxicity.\n\nThe TXPO contains an is-a hierarchy that is organized into three layers: the top layer contains general terms, mostly derived from the Basic Formal Ontology. The intermediate layer contains biomedical terms in OBO foundry from UBERON, Cell Ontology, NCBI Taxon, ChEBI, Gene Ontology, PATO, OGG, INOH, HINO, NCIT, DOID and Relational ontology (RO). The lower layer contains toxicological terms.\n\nIn applied work, we have developed a prototype of TOXPILOT, a TOXic Process InterpretabLe knOwledge sysTem. TOXPILOT provides visualization maps of the toxic course, which facilitates capturing the comprehensive picture for understanding toxicity mechanisms. A prototype of TOXPILOT is available: https://toxpilot.nibiohn.go.jp"^^ . + . + "The Terminology for Description of Dynamics (TEDDY) is an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."^^ . + "true"^^ . + . + . + . + . + . + . . - . - . - . - . - . - . - . - "txpo" . - . - "pfey@northwestern.edu" . - . - . - . - . - . - "^\\d{7}$"^^ . - "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - . - . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/MSIO_$1"^^ . - "https://pharmacodb.ca/datasets/"^^ . - "false"^^ . - "radiomics" . - . - . - . - "tgn" . - "Vaccine administered code set" . - . - . - . - . - . - . - . - . - . - . - "A comprehensive set of radiology terms for use in radiology reporting, decision support, data mining, data registries, education and research.\n\nRadLex provides the foundation for vital data resources used in radiology:\n\n- The LOINC/RSNA Radiology Playbook\n- RadElement Common Data Elements\n-RadReport Radiology Reporting Templates\n\nThe development of RadLex has been supported by the National Institute of Biomedical Imaging and Bioengineering (NIBIB) and the cancer Biomedical Informatics Grid (caBIG) project."^^ . - "dr.shorthair@pm.me" . - . - . - . - . - "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"^^ . - . - . - . - . - . - . - "botany" . - . - . - . - . - "anatomy" . - . - . - . - "The OM ontology provides classes, instances, and properties that represent the different concepts used for defining and using measures and units. It includes, for instance, common units such as the SI units meter and kilogram, but also units from other systems of units such as the mile or nautical mile. For many application areas it includes more specific units and quantities, such as the unit of the Hubble constant: km/s/Mpc, or the quantity vaselife. OM defines the complete set of concepts in the domain as distinguished in the textual standards. As a result the ontology can answer a wider range of competency questions than the existing approaches do. The following application areas are supported by OM: Geometry; Mechanics; Thermodynamics; Electromagnetism; Fluid mechanics; Chemical physics; Photometry; Radiometry and Radiobiology; Nuclear physics; Astronomy and Astrophysics; Cosmology; Earth science; Meteorology; Material science; Microbiology; Economics; Information technology; Typography; Shipping; Food engineering; Post-harvest; technology; Dynamics of texture and taste; Packaging"^^ . - . - . - . - "1000"^^ . - . - . - . - . - "^\\w+(\\.)?(\\d+)?$"^^ . - "false"^^ . - . - . - "http://europepmc.org/articles/$1"^^ . - "oceanography" . - . - "MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data."^^ . - "obo" . - "RNACentral" . - . - . - . - . - _:Nac3b925206fd4665aad57e5e11afb65a . - "https://euclinicaltrials.eu/app/#/view/"^^ . - . - . - . - "^HIP\\d{9}(\\.\\d+)?$"^^ . - "mi" . - . - . - "Drosophila gross anatomy" . - . - "model" . - . - "Life cycle stages for Human"^^ . - . - . - . - "life science" . - . - "developmental biology" . - . - . - . - "^\\d+$"^^ . - . - . - "rdfs" . - . - . - . - . - "https://covid19.sfb.uit.no/api/records/$1"^^ . - . - . - "interaction" . - "false"^^ . - "expression" . - . - . -_:Nb2f2dacd286c4088869c5474d4d79310 "maria.herrero@kcl.ac.uk" . - . - . - "pharmacogenomics" . - "cp" . - . - . - "http://ascl.net/$1"^^ . - . - . - . - "http://purl.obolibrary.org/obo/AGRO_$1"^^ . - . - "^BG\\d+$"^^ . - "^(ev\\:)?E\\d+$"^^ . - "false"^^ . - "Human Protein Reference Database" . - . - . - "Funding, Research Administration and Projects Ontology" . - . - "DataCite Ontology" . - . - . - . - . - . - . - "http://purl.org/oban/"^^ . - . - . - . - "http://purl.obolibrary.org/obo/TRANS_"^^ . - . - "https://www.perkinelmer.com/searchresult?searchName="^^ . - "https://dataguids.org/ga4gh/dos/v1/dataobjects/"^^ . - . - . - . - . - . - . - . - . - . - . - "dinto" . - . - . - "life science" . - "dgrc" . - . - . - "https://cmecscatalog.org/cmecs/classification/unit/$1.html"^^ . - "false"^^ . - "^[A-Za-z0-9]+$"^^ . - "The Human Gene Mutation Database (HGMD) collates data on germ-line mutations in nuclear genes associated with human inherited disease. It includes information on single base-pair substitutions in coding, regulatory and splicing-relevant regions; micro-deletions and micro-insertions; indels; triplet repeat expansions as well as gross deletions; insertions; duplications; and complex rearrangements. Each mutation entry is unique, and includes cDNA reference sequences for most genes, splice junction sequences, disease-associated and functional polymorphisms, as well as links to data present in publicly available online locus-specific mutation databases."^^ . - "http://champ-project.org/images/ontology/cao.owl#CAO_"^^ . - "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references microarray experiments."^^ . - . - "pubchem.assay" . - . - . - "ccle" . -_:Nd772a1887b1e4e43ab904ab8cad89d95 "futo@stanford.edu" . - "false"^^ . - "ontology" . - . - . - . - . - . - "https://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#$1"^^ . - "http://purl.obolibrary.org/obo/HSO_$1"^^ . - . - "ontology" . - . - "structrual bioinformatics" . - . - . - . - "https://labsyspharm.github.io/lspci/"^^ . - . - . - "^\\d{7}$"^^ . - . - . - "The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc."^^ . - . - . - "https://github.com/$1"^^ . - . - . - . - . - . - . - . - . - . - "neurobiology" . - "CC-BY-1.0"^^ . - . - . - "^MIMAT\\d{7}$"^^ . - . - "CTX" . - "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . - "false"^^ . - . - "OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other."^^ . - . - . - . - . - "RePORTER is an electronic tool that allows users to search a repository of both intramural and extramural NIH-funded research projects and access publications and patents resulting from NIH funding."^^ . - "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes."^^ . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - . + "00573"^^ . + . + . + . + "http://www.hprd.org/protein/$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Blake A Sweeney" . + . + . + "Human Dephosphorylation Database" . + . + "ChEMBL" . + . + . + . + "ontology" . + . + . + "ontology" . + "http://purl.obolibrary.org/obo/OMP_$1"^^ . + . + "https://www.affymetrix.com/LinkServlet?probeset="^^ . + "880798137"^^ . + . + . + "fish" . + . + . + . + . + "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models."^^ . + . + . + . + "dbo" . + "Radiation Biology Ontology" . + "http://www.violinet.org/vaxquery/vaccine_detail.php?c_vaccine_id=$1"^^ . + . + . + . + "false"^^ . + "biokc" . + "https://bioregistry.io/p3db.protein:"^^ . + . + "nb100-56351"^^ . + . + "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=$1"^^ . + . + . + . + . + . + . + "Rafael Richards" . + . + "15"^^ . +_:N2c879c99261d461d9a37ca99cbbfcbb7 "Rafael Gonçalves" . + . + "The number of known protein sequences exceeds those of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. The Protein Model Portal (PMP) provides a single portal to access these models, which are accessed through their UniProt identifiers."^^ . + . + "false"^^ . + . + . + . + "ontology" . + . + "0000685"^^ . + "cog" . + . + "uberon"^^ . + . + "http://purl.obolibrary.org/obo/T4FS_$1"^^ . + . + "life science" . + . + . + . + "beta cell" . + "PR00001"^^ . + . + "^ML\\w+$"^^ . + . + . + "https://sciflection.com/$1"^^ . + . + "https://www.uniprot.org/keywords/$1"^^ . + . + "PubChem Cell Line" . + "Damion Dooley" . + "EC number" . + "SCV000151292"^^ . + . + "false"^^ . + . + . + . + "C00000001"^^ . + "dna" . + "false"^^ . + "dsmz_mutz-id:ACC 291"^^ . + . + . + . + "MJoachimiak@lbl.gov" . + "kegg.module" . + . + "false"^^ . + "SRX000007"^^ . + . + "nif.ext" . + "phenomics" . + "ProbOnto, is an ontology-based knowledge base of probability distributions, featuring uni- and multivariate distributions with their defining functions, characteristics, relationships and reparameterisation formulae. It can be used for annotation of models, facilitating the encoding of distribution-based models, related functions and quantities."^^ . + . + "An ontology for glycans based on GlyTouCan, but organized by subsumption."^^ . + . + . + . + . + "https://swbiodiversity.org/seinet/taxa/index.php?taxon="^^ . +_:N1603a0611b164486bead2cd509e1f9d8 "nospam@iandavis.com" . + "http://purl.obolibrary.org/obo/PSO_$1"^^ . + "false"^^ . + . + . + "SCC111"^^ . + "0000002"^^ . + "protein" . + "biology" . + "false"^^ . + "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds."^^ . + . + "francesco.vitali@ibba.cnr.it" . + "ontology and terminology" . + . + "life science" . + "protein" . + . + . + . + "http://phenol-explorer.eu/foods/$1"^^ . + "As a scientific user facility, the Environmental Molecular Sciences Laboratory (EMSL) provides expertise, instrumentation, and resources to 250 projects each year. Current and past projects supported through a variety of EMSL user proposal avenues are publicly searchable on the EMSL website. Project pages provide details including:\n- Research team and institution\n- The EMSL project DOI\n- Link to project data available in EMSLs Data Portal\n- Project type"^^ . + "http://www.pharmgkb.org/gene/"^^ . + "subject agnostic" . + "^TIGR\\d+$"^^ . + . + "SABIO-RK Compound" . + . + "^\\d{7}$"^^ . + . + . + "false"^^ . + . + "anatomy" . + "Rules are devised and tested by experienced curators using experimental data from manually annotated entries as templates. UniRule rules can annotate protein properties such as the protein name, function, catalytic activity, pathway membership, and subcellular location, along with sequence specific information, such as the positions of post-translational modifications and active sites."^^ . + . + . + . + . + . + "interaction" . + "https://www.cbioportal.org/study/summary?id="^^ . + "disease" . + "SNOMED CT (International Edition)" . + . + "https://spdx.org/licenses/$1"^^ . + . + "Bioregistry" . + . + . + "systems biology" . + "disease" . + "biology" . + "protein" . + . + . "RCSB_PDB" . - . - . - "icldb" . - . - "Developmental stages of the Zebrafish"^^ . - . - _:N77a0b5ac24044f6e9515254331151ed1 . - "noncodev4.gene" . - "vdrc" . - "genomics" . - . - "sperm" . - . - "http://purl.obolibrary.org/obo/AAO_$1"^^ . - . - "https://www.genenames.org/cgi-bin/genefamilies/set/"^^ . - . - . - . - "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId="^^ . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "false"^^ . - . - . - . - "http://purl.obolibrary.org/obo/PCO_$1"^^ . - . - . - "molecular biology" . - . - "http://www.antweb.org/specimen.do?name="^^ . - . - "^\\d+$"^^ . - . - "Planarian Phenotype Ontology" . - "life science" . - . - "plant" . - . - "LOC_Os02g13300"^^ . - "https://bartoc.org/en/node/$1" . - . - "6000122"^^ . - "gene" . - . - . - . - "iNaturalist Place" . - . - "biology" . - "hagr.genage" . - . - . - . - "https://cropontology.org/rdf/CO_335:$1"^^ . - . - . - . - "medicine" . - . - . - . - "false"^^ . - "biochemistry" . - . - . - "OpenAlex" . - . - . - "00056"^^ . - . - . - "^VB\\.[A-Za-z][A-Za-z]\\..*$"^^ . - . - . - . - . - "ValidatorDB" . - "modeldb.concept" . - . - . - . - . - . - "Sheng-Da Hsu" . - "The Prescription of Drugs Ontology" . - . - . - . - . - "https://portal.issn.org/resource/ISSN/"^^ . - . - . - "false"^^ . - . - . - "phylogenetics" . - "^CHEMBL\\d+$"^^ . - "SUPERFAMILY" . - "https://www.sharkipedia.org/trends/"^^ . - "http://purl.obolibrary.org/obo/FYPO_"^^ . + . + . + "epigenomics" . + "ontology" . + . + . + . + . + . + . + "false"^^ . + "toprea@salud.unm.edu" . + "Cooperative Patent Classification" . + "false"^^ . + . + . + . + . + "http://purl.org/oban/$1"^^ . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "Microbial Protein Interaction Database" . + . + "Genetree displays the maximum likelihood phylogenetic (protein) trees representing the evolutionary history of the genes. These are constructed using the canonical protein for every gene in Ensembl."^^ . + "interaction" . + . + . + . + "ypo" . + . + . + . + . + "subject agnostic" . + . + "Daniel Gautheret" . + . + "Publons Researcher" . + . + . + "^\\w{1,2}\\d+$"^^ . + . + . + . + . + . + . + "ontology" . + . + . + . + . + . + . + "ontology" . + . + . + . + . + "mouse strain" . + "metabolite" . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria marinum information."^^ . + . + . + "false"^^ . + . + "genome" . + "health science" . + . + . + . + . + . + "false"^^ . + . + . + . + "http://www.kegg.jp/entry/"^^ . + . + . + . + . + "isanchez@cnb.csic.es" . + . + . + . + "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects."^^ . + "100010"^^ . + . + "https://www.cellbankaustralia.com/$1.html"^^ . + . + "idpo" . + . + . + . + "NM_006262"^^ . + "Genetic Testing Registry" . + . + . + . + . + "^MI\\d{7}$"^^ . + . + "https://precision.fda.gov/uniisearch/srs/unii/$1"^^ . + . + "ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor."^^ . + . + . + "https://nanocommons.github.io/identifiers/registry#$1"^^ . + "http://purl.obolibrary.org/obo/OBCS_"^^ . + . + "http://genomics.senescence.info/diet/details.php?id="^^ . + . + . + "zebrafish" . + . + "geno" . + . + . + . + . + . + . + "false"^^ . + . + . + . + "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=$1"^^ . + . + . + "16941567"^^ . + . + "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins."^^ . + . + . + "false"^^ . + . + . + . + "molecular genetics" . + . + . + . + "ensembl.metazoa" . + "true"^^ . + "neurobiology" . + . + "fbsp" . + "false"^^ . + . + . + . + . + "ocid" . + "repository" . + "kegg.environ" . + . + . + "false"^^ . + "https://reporter.nih.gov/project-details/$1"^^ . + . + "mcro" . + "http://purl.obolibrary.org/obo/GOREL_"^^ . + . + "11303"^^ . + . + "0005452"^^ . + . + . + "Comprehensive hierarchy of extinct and extant vertebrate taxa."^^ . + "iceberg.element" . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with metazoa genomes."^^ . + . + "http://virtualflybrain.org/reports/"^^ . + "enzymology" . + "biomedical science" . + "interaction" . + . + "Proteomic Data Commons" . + "business administration" . + "physiology" . + "false"^^ . + . + "est" . + "vt" . + . + . + . + . + "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters."^^ . + . + "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database RefSeq accessions does not extend to viroids and bacteriophage."^^ . + . + . + "^\\d{7}$"^^ . + "project management" . + "cog.category" . + . + "The OBO namespace is the top-level namespace used by Open Biological and Biomedical Ontology (OBO) Foundry ontologies."^^ . + "Xenbase" . + . + . + "false"^^ . + "leen.vandepitte@vliz.be" . + "Leszek@missouri.edu" . + "datacommons" . + . + . + "^\\d+$"^^ . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + "0000547"^^ . + . + "https://commonchemistry.cas.org/detail?cas_rn="^^ . + . + . + "https://www.ebi.ac.uk/interpro/set/pfam/$1"^^ . + . + "regulation" . + . + "0002-1975-61"^^ . + . + . + . + . + "N1899"^^ . + . + . + . + "did" . + . + "reaction" . + "0000000"^^ . + . + . + . + "431472"^^ . + "kegg.brite" . + "CAA71118.1"^^ . + . + "^\\d+$"^^ . + . + . + "CLV_MEL_PAP_1"^^ . + . + . + "Gramene QTL" . + . + "protein" . + "https://www.proteomicsdb.org/#human/proteinDetails/$1/summary"^^ . + . + . + . + "http://www.pharmgkb.org/drug/"^^ . + "00026f50-858a-446b-8ed9-b0e3ecd7b20e"^^ . + . + . + . + . + . + "https://www.sigmaaldrich.com/US/en/product/sigma/"^^ . + "genomics" . + "http://purl.obolibrary.org/obo/VO_$1"^^ . + . + "^[a-f0-9]+$"^^ . + "^\\d{7}$"^^ . + "^ACTRN\\d+$"^^ . + . + "Human developmental anatomy, abstract" . + "scoro" . + . + "^\\d+$"^^ . + . + . + "Interaction Network Ontology" . + . + . + . + . + "OriDB Saccharomyces" . + . + . + . + . + "This is a relational database of information about hemoglobin variants and mutations that cause thalassemia."^^ . + "false"^^ . + . + . + . + . + "0000690"^^ . + "Doug Howe" . + "apid.interactions" . + . + . . - . - . - "Virus Pathogen Resource" . - . - . - "GL50803_102438"^^ . - . - "protein" . - . - . - . - . - . - . - "obo" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/"^^ . - "Ensembl" . - . - . - . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])|([0-9][A-Za-z0-9]{3})$"^^ . - . - . - . - "90801"^^ . - . + . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/$1"^^ . + . + . + . + . + . + "Small Angle Scattering Biological Data Bank" . + "fish" . + . + "atcc" . + . + . + . + . + . + . + "http://func.mshri.on.ca/human/genes/list_functional_scores/$1"^^ . + . + . + "fungi" . + "SABIO-RK EC Record" . + . + . + "Cambridge Structural Database" . + "1"^^ . + . + . + "false"^^ . + . + "ontology" . + . + . + . + . + . + "amoebadb" . + "0000000"^^ . + . + "^m\\w+$"^^ . + "atcvet" . + . + . + . + "Studies in dbVar."^^ . + . + . + . + . + . + "Comprehensive Resource of Mammalian protein complexes" . + . + "Ontology about C. elegans and other nematode phenotypes"^^ . + "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$"^^ . + "A structured controlled vocabulary of anatomies of the slime-mold Dictyostelium discoideum."^^ . + "Computer Retrieval of Information on Science Projects Thesaurus" . + "The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms" . + "PANTHER Pathway Component" . + "http://purl.org/vocab/frbr/core#$1"^^ . + . + . + . + . + . + . + . + . + "00000001"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "^\\w+$"^^ . + "0000609"^^ . + . + . + . + "false"^^ . + . + . + . + "drduke" . + "Golm Metabolome Database GC-MS spectra" . + . + . + "http://drugcentral.org/drugcard/$1"^^ . + . +_:N079a0021d80a4a12a1492a0b06b42da6 "Julian Seidenberg" . + . + . + "organism supplier" . + "Aspergillus Genome Database" . + "obo" . + . + "An ontology covering the taxonomy of teleosts (bony fish)"^^ . + "false"^^ . + . + . + "https://bioregistry.io/diseasesdb:"^^ . + . + . + "adw" . + "Clinical Trial Registries" . + . . - . - "^\\d{6}$"^^ . - . - "Sorghum ontology" . - . - . - "https://cropontology.org/rdf/CO_324:"^^ . -_:N41714787cd9047729c702a0d53c298fe "vlee@ebi.ac.uk" . - . - . - . - _:N2c447aacef584c2594724c5666a30b84 . - . - "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid="^^ . - "https://www.uniprot.org/arba/"^^ . - . - "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data."^^ . - . - . - . - . - "hso" . - . - . - "https://www.sigmaaldrich.com/US/en/product/sigma/"^^ . - . - "ExO is intended to bridge the gap between exposure science and diverse environmental health disciplines including toxicology, epidemiology, disease surveillance, and epigenetics."^^ . - . - . - "mirnest" . - . - . - . - . - . - "d1id" . - . - . - . - . - "http://www.imgt.org/ligmdb/view?id="^^ . - . - "C00000001"^^ . - . - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:$1"^^ . - "http://id.nlm.nih.gov/mesh/vocab#$1"^^ . - "^\\w+(\\.\\d+)$"^^ . - . - "20021"^^ . - . - . - . - "false"^^ . - "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/$1"^^ . - . - "ontology" . - . - . - . - "false"^^ . - . - . - "http://www.drugbank.ca/drugs/$1"^^ . - . - . - . - . - "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"^^ . - . - "cell biology" . - . - . - "Chemical Information Ontology" . - "^(Gi|Gc)\\d+$"^^ . - . - "pkdb" . - "61467"^^ . - . - "protein" . - "false"^^ . - "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019"^^ . - . - . - . - . - . - . - . - . - . - "obstetrics" . - . - "chemical biology" . - . - "https://www.webofscience.com/wos/woscc/full-record/WOS:$1"^^ . - . - . - "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases."^^ . - . - "false"^^ . - . - . - . - "^\\d+$"^^ . - "EAWAG Biocatalysis/Biodegradation Database" . - "ZDB-GENE-041118-11"^^ . - . - . - "false"^^ . - "ASKEM Epidemiology Prefixes" . - . - "https://vac.niaid.nih.gov/view?id="^^ . - . - . - . - . - "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value="^^ . - . - . - "An ontology for representing the provenance of scientific claims and the evidence that supports them."^^ . - "bioinformatics" . - . - "true"^^ . - "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val="^^ . - "https://fairsharing.org/$1"^^ . - . - . - . - . - . - . - . - . - "diseasesdb" . - . - "disprot.region" . - . - . - "http://aber-owl.net/ontology/$1/#/Browse/" . - . - . - . - "functional genomics" . - . - "protonet.proteincard" . - . - . - "molecular biology" . - "DDB0016567"^^ . - "robert.hoehndorf@kaust.edu.sa" . - . - "biomedical science" . - . - . - . - "false"^^ . - . - "^LGCEDe-S-\\d{9}$"^^ . - . - "false"^^ . - . - "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity."^^ . - "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id="^^ . - "biology" . - "ICEberg integrative and mobilizable element" . - . - . - . - "485991"^^ . - . - . - . - . - "structure" . - "cohd" . - "Q13485"^^ . - . - . - "0000066"^^ . - . - . - . - "http://purl.obolibrary.org/obo/ZEA_"^^ . - . - . - . - . - "https://reaxys.emolecules.com/cgi-bin/more?vid="^^ . - . - "https://metazoa.ensembl.org/id/"^^ . - "^L\\d+$"^^ . - . - . - "COL3A1"^^ . - "Horizon Discovery cell line collection" . - . - "AspGD Protein" . - . - . - "false"^^ . - "http://purl.obolibrary.org/obo/ECAO_"^^ . - . - . - . - . - . - . - . - . - "transposon insertion" . - . - . - "FxnI151FMs"^^ . - . - . - "^\\d{3}$"^^ . - . - . - . - . + . + "The set of prefixes used in the Cellosaurus resource" . + . + "A Phenotypic Series is a tabular view of genetic heterogeneity of similar phenotypes across the genome."^^ . + . + . + "genome" . + "hinv.transcript" . + . + . + "clement.jonquet@inrae.fr" . + "obo" . + _:N717444d80a984999b81a04f5f075fef5 . + . + . + "^(ZINC)?\\d+$"^^ . + "39421"^^ . + . + . + . + . + "8497"^^ . + . + "false"^^ . + . + "TP53-47"^^ . + . + . + . + . + . + . + "genome" . + . + "The Catalytic Site Atlas (CSA) is a database documenting enzyme active sites and catalytic residues in enzymes of 3D structure. It uses a defined classification for catalytic residues which includes only those residues thought to be directly involved in some aspect of the reaction catalysed by an enzyme."^^ . + "false"^^ . + . + . + "info@hoelzel.de" . + "false"^^ . + "false"^^ . + "iobc" . + "genome" . + . + . + . + . + . + "empiar" . + "false"^^ . + . + "http://purl.obolibrary.org/obo/CLAO_"^^ . + . + "https://www.ensembl.org/id/$1"^^ . + "https://www.genome.jp/virushostdb/"^^ . + . + . + "recombinant host" . + . + "http://purl.obolibrary.org/obo/AMPHX_"^^ . + "iuphar.family" . + . + "YGOB is an online tool for visualising the syntenic context of any gene from several yeast genomes."^^ . + . + . + . + "false"^^ . + . + "epigenetics" . + "Fission Yeast Phenotype Ontology" . + "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=$1"^^ . + . + "D00123"^^ . + . + . + "Yeast Metabolome Database" . + . + . + . + . + "Research Resource Identification" . + . + . + "mathematics" . + . + . + . + "9002859"^^ . + . + "KCT0008394"^^ . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID="^^ . + "648028003"^^ . + . + "^\\d+$"^^ . + "T3D0001"^^ . + . + . + . + "https://w3id.org/nfdi4cat/voc4cat_$1"^^ . + "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)."^^ . + . + . + "https://neurovault.org/collections/"^^ . + . + "noaa" . + . + . + . + . + . + . + "mutation" . + . + . + . + . + . + . + "https://www.checklistbank.org/dataset/3LR/taxon/$1"^^ . + "FHIR United States Implementation Guides" . + . + . + "Identifier for a journal article in the fossilworks website"^^ . + . + . + "DASHR expression" . + "Toxic Process Ontology" . + "0000138"^^ . +_:N1941aa3acb794f359c0dab40a07927ba "helpdesk@cropontology-curationtool.org" . + . + "An ontology for dengue fever."^^ . + . + . + . + . + . + . + "VIRsiRNA" . + "Virus' miRNA target" . + "https://spdx.org/licenses/"^^ . + "nicole@tislab.org" . + "false"^^ . + "ncbi.assembly" . + . + "dna" . + . + . + "true"^^ . + . + . + . + "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . + . + . + "life science" . + "MI0026471"^^ . + "false"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/RXNO_$1"^^ . + "Terminology for Description of Dynamics" . + . + . + "Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, foundamentally structured by upper level Basic Formal Ontology(BFO). This Ontology is enriched by the interrelational entities that demonstrate the nextwork of the understanding on Alzheimer's disease and can be readily applied for text mining."^^ . + . + "nif.std" . + "^DRSC\\d+$"^^ . + . + . + . + . + "http://www.whocc.no/atc_ddd_index/?code="^^ . + . + . + "http://purl.obolibrary.org/obo/CMF_"^^ . + . + . + . + . + "Food Classification and Description System" . + . + "4447"^^ . + "Pocketome is an encyclopedia of conformational ensembles of all druggable binding sites that can be identified experimentally from co-crystal structures in the Protein Data Bank. Each Pocketome entry corresponds to a small molecule binding site in a protein which has been co-crystallized in complex with at least one drug-like small molecule, and is represented in at least two PDB entries."^^ . + . + "The localization and quantitation atlas of the yeast proteome" . + "fideo" . + . + . + . + . + . + . + . . - "http://purl.obolibrary.org/obo/HEPRO_$1"^^ . - "^\\w+$"^^ . - "HGNC gene symbol" . - "GlycoMapsDB" . - . - . - "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family="^^ . - "https://w3id.org/aio/$1"^^ . - . - . - . - . - . - . - "H-InvDb Transcript" . - "false"^^ . - "pharmacogenomics" . - . - . - "^(data|topic|operation|format)\\_\\d{4}$"^^ . - . - . - . - . - "Measurement method ontology" . - . - . - . - . - "genome" . - . - . - "Yasset Perez-Riverol" . - . - . - . - . - . - . - . - "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation."^^ . - . - . - . - . - . - . - . - "hoganwr@gmail.com" . - . - . - . - "false"^^ . - . - "http://comgen.pl/mirex1/?page=results/record&name=$1&exref=pp2a&limit=yes"^^ . - . - "phenomics" . - . - . - . - "Amphibian taxonomy" . - "http://purl.obolibrary.org/obo/ECAO_$1"^^ . - . - "TubercuList knowledge base" . - . - "henriette007@ebi.ac.uk" . - . - "Charles Ettensohn" . - . -_:N1e1af9a9bb40494590a2f364cd4896a2 "Crop Ontology Helpdesk" . - . - . - "Harry E. Pence" . - . - . - . - "false"^^ . - . - "^\\d+$"^^ . - . - "^10.\\w{4}/\\w{10}$"^^ . - . - . - . - "ymdb" . - "0100002"^^ . - . - . - "ega.dataset" . - . - "http://purl.obolibrary.org/obo/CIO_$1"^^ . - "life science" . - "Dongsheng Cao" . - . - . - . - "ontology" . - . - "^\\d{6}$"^^ . - . - "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."^^ . - . - . - "Transcription Factor Database" . - "false"^^ . - "botany" . + "mfo" . + . + . + . + . + . + "https://rpcec.sld.cu/en/trials/$1"^^ . + . + . + . + "false"^^ . + . + . + "false"^^ . + "false"^^ . + . + . + . + "https://bartoc.org/en/node/"^^ . + . + . + . + . + . + . + . + "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Marker."^^ . + "DBrodbelt@RVC.AC.UK" . + "https://assets.nemoarchive.org/$1"^^ . + "false"^^ . + . + "chemical biology" . + "ontology" . + . + . + . + . + "ambystoma" . + . + "ontology" . + . + . + "ontology" . + "false"^^ . + . + . + "This is the RDF Schema for the RDF vocabulary terms in the RDF Namespace, defined in RDF 1.1 Concepts"^^ . + "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID="^^ . + . + . + . + . + . + "PS00001"^^ . + . + "salmon" . + "biology" . + . + "ID in NIAID ChemDB"^^ . + . + . + . + . + . + . + . + . + "MULT_4_VAR1_bovine"^^ . + . + "life science" . + "ontology" . + . + _:N216cbdecc2d7444289dbaf0f948d7bb1 . + . + "DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action."^^ . + . + . +_:N1994ddc7e4024e5ea4c9252b93225408 "WHO Collaborating Centre for Drug Statistics Methodology" . + "SNOWMEDCT_US" . + . + "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. The data were previously provided by the miRNA Registry. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR)."^^ . + . + . + "The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample."^^ . + "https://pubchem.ncbi.nlm.nih.gov/element/$1"^^ . + "scopus.eid" . + . + "0000003"^^ . + "The Bibliographic Ontology" . + "https://caninecommons.cancer.gov/#/study/$1"^^ . + . + "Integrated Taxonomic Information System" . + . + "http://vocabularies.bridgedb.org/ops#"^^ . + "https://www.ncbi.nlm.nih.gov/nucest/"^^ . + . + . + . + . + . + . + . + . + "Mungbean ontology" . + "http://purl.obolibrary.org/obo/DINTO_"^^ . + . + "true"^^ . + . + "Ontology for Immune Epitopes" . + "sequence" . + . + . + . + "false"^^ . + . + . + "BCRTi001-A"^^ . + . + . + "terms4FAIRskills" . + . + "The AlzGene database provides a comprehensive, unbiased and regularly updated field synopsis of genetic association studies performed in Alzheimer’s disease. In addition, hundreds of up-to-date meta-analyses are available for all eligible polymorphisms with sufficient data."^^ . + . + . + "Vertebrate Skeletal Anatomy Ontology" . + "Zebrafish Information Network Gene" . + "dna" . + "health" . + . + . + . + . + "false"^^ . + . + "^[A-Za-z0-9]+$"^^ . + "false"^^ . + . + . + "https://w3id.org/semapv/vocab/$1"^^ . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "Every entity in OpenCitations Meta (https://opencitations.net/meta) is assigned persistent internal identifier called OpenCitations Meta Identifier (OMID). The OMID has structure [[entity_type_abbreviation]]/[[supplier_prefix]][[sequential_number]]. For example, the first journal article ever processed has OMID br/0601 (the full URI is https://w3id.org/oc/meta/br/0601), where br is the abbreviation of bibliographic resource, and 060 corresponds to the supplier prefix, helpful in recognising at a glance the index it belongs to (i.e., OpenCitations Meta). Finally, 1 indicates that this is the index's first bibliographic resource ever minted."^^ . + . + "20090303"^^ . + . + . + "BBA0001"^^ . + . + "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . + . + . + . + "false"^^ . + "Database of Arabidopsis Transcription Factors" . + . + . + . + . + . + . + "^\\d{7}$"^^ . + "https://www.uniprot.org/tissues/$1"^^ . + . + "genetic material" . + "ontology" . + . + . + . + . + . + . + "virology" . + "CTD Disease" . + "http://purl.obolibrary.org/obo/FBbt_$1"^^ . + "kegg.ligand" . + "https://www.encodeproject.org/"^^ . + . + . + . + . + . + . + . + . + "https://go.drugbank.com/indications/"^^ . + . + . + . + . + . + . + . + . + . + . + . + "kegg.enzyme" . + "http://purl.obolibrary.org/obo/NOMEN_"^^ . + . + "gene" . + "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key=$1"^^ . + "vcell" . + . + "vbo" . + . + . + "software engineering" . . - "https://umgear.org/p?id=$1"^^ . - "0000009"^^ . - "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id=$1"^^ . - "A download link for the given resource" . - . - . - . - "Non-Coding RNA Ontology" . - . - . + . + "UPPRO" . + . + . + . + . + "MedlinePlus Health Topics" . + . + . + "false"^^ . + . + . + . + . + . + . + "dna" . + . + . + . + . + "true"^^ . + . + "^\\d+$"^^ . + . + . + "^PF\\d{5}$"^^ . + . + "An ontology developed as part of the Chemical Analysis Metadata Project (ChAMP) as a resource to semantically annotate standards developed using the ChAMP platform. (source: CAO ontology)"^^ . + . + "MTHICD9_2006" . + . + . + "0010034"^^ . + . + "hipsci" . + "2"^^ . + . + . + "Cell line databases/resources"^^ . + . + . + "0000040"^^ . + "CIViC Variant Group" . + . + "suzia@stanford.edu" . + "PesticideInfo chemical ID" . + "PANTHER Pathway" . + . + "MAMpol005339"^^ . + "Datasets around different cancer cell lines generated by the Broad Institute and Novartis"^^ . + "false"^^ . + . + . + . + "David Wishart" . + . + . + . + . + . + "biomedical science" . + "phenomics" . + "genomics" . + . + . + . + "drug" . + . + "genome" . + . + "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."^^ . + . + "benjamin_gyori@hms.harvard.edu" . + "Five Stars of Online Research Articles Ontology" . + . + . + . + "comparative genomics" . + "^\\d+$"^^ . + . + "illumina.probe" . + "interaction" . + . + . + . + "neuroscience" . + "CID" . + . + "https://run.biosimulations.org/simulations/"^^ . + "_space_group_symop.operation_xyz"^^ . + "pharmacodb.tissue" . + _:Nf9f7c3b2293d498c9c5b447a07a5fe53 . + . + . + . + . + "ElementNumber"^^ . + . + . + . + . + . + . + "nihreporter.project" . + "^\\d+$"^^ . + . + . + "imdrf" . + "false"^^ . + . + "false"^^ . + "ecology" . + . + "^\\d+$"^^ . + . + . + "false"^^ . + "Prefix Commons" . + "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org" . + . + "^GN_[A-Za-z0-9_:]+$"^^ . + "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + . + . + . + . + "InTextReferencePointer"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "^[A-Z-0-9]+(\\:)?[A-Za-z0-9+_.%-:]+$"^^ . + . + "true"^^ . + "1455"^^ . + "ontology" . + "false"^^ . + "phylogeny" . + . + . + . + "5"^^ . + "ontology" . + . + . + . + "uniprot.arba" . + . + "ontology" . + . + "false"^^ . + . + . + . + . + . + . + . + . + "Product number for the European Medicines Agency"^^ . + . + "gmelin" . + . + "pathway" . +_:N14dff4050e56443cbb5c64756bfee9df "michael.lincoln@med.va.gov" . + . + . . - . - . - . - "Identifier for a place in iNaturalist"^^ . - . - . - . - . - . - "oboformat" . - . - . - "homologene" . - "false"^^ . - . - . - . - . - "https://www.worldcat.org/oclc/$1"^^ . - . - . - "medicine" . - "cell line" . - . - . - . - "mathematics" . - . - . - "RepeatsDB Protein" . - . - . - "^PA\\d+$"^^ . - . - "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"^^ . - . - . - . - . - . - . - "Terry Hayamizu" . - . - . - . - . - "ontology and terminology" . - "zfs" . - "interaction" . - "4"^^ . - "An anatomical and developmental ontology for cephalopods"^^ . - . - "CRISP" . - . - "https://cropontology.org/rdf/CO_346:$1"^^ . - "mo" . - . - "post-transcriptional modification" . - . - . - "false"^^ . - "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"^^ . - . - "Ontological Interpretations for Web Property Graphs" . - "https://bioregistry.io/bykdb:"^^ . - . - "https://mmp.sfb.uit.no/databases/marref/#/records/"^^ . - "Canadian Drug Product Database" . - . - "true"^^ . - "Molecular database for the identification of fungi" . - "NLXMOL" . - . - . - . - "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease."^^ . - . - . - . - . - "PANTHER Pathway" . - . - . - "1kfv"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/OMIABIS_"^^ . - . - "MMP0523"^^ . - . - "genome" . - . - . - . - "http://purl.obolibrary.org/obo/MFOMD_$1"^^ . - "nuclear" . - "archdb" . - . - . - "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language."^^ . - . - . - . - . - . - . - "PGS000018"^^ . - . - . - "biology" . - . - . - "^[0-9][A-Za-z0-9]{3}$"^^ . - . - "img.taxon" . - "gudmap" . - . - . + "An identifier for an atom; the smallest unit of naming in a source, viz, a specific string with specific code values and identifiers from a specific source. As such, they can be thought of as representing a single meaning with a source Atoms are the units of terminology that come from sources and form the building blocks of the concepts in the Metathesaurus."^^ . + "NextDb is a database that provides information on the expression pattern map of the 100Mb genome of the nematode Caenorhabditis elegans. This was done through EST analysis and systematic whole mount in situ hybridization. Information available includes 5' and 3' ESTs, and in-situ hybridization images of 11,237 cDNA clones."^^ . + "^[0-9]+$"^^ . + . + "biochemistry" . + "false"^^ . + "scopus.work" . + . + "life science" . + . + . + . + . + "babelon" . + "gene" . + "0000590"^^ . + . + . + "Website with general information about Arabidopsis and functionalities such as a genomic viewer"^^ . + "https://biopragmatics.github.io/providers/sdis/"^^ . + "^\\d+$"^^ . + "false"^^ . + "false"^^ . + "d.craik@imb.uq.edu.au" . + . + . + "https://www.sharkipedia.org/traits/"^^ . + "Cell line collections (Providers)"^^ . + . + . + . + . + . + . + "^[A-Za-z0-9\\/]+$"^^ . +_:N41832f0c597c429ab1999cfcb8242156 "The World Health Organization" . + "genome" . + . + . + "biomedical science" . + "taxonomy" . + . + "A vocabulary for cattle, chicken, horse, pig, and sheep breeds."^^ . + . + . + . + . + . + . + . + "false"^^ . + "anatomy" . + . + . + . + "false"^^ . + "https://cropontology.org/rdf/CO_325:$1"^^ . + . + "worm" . + . + . + . + "http://purl.org/dc/terms/"^^ . + . + "ISED catalogues the influenza sequence and epitope information obtained in countries worldwide and currently hosts a total of 49368 influenza A and 4761 influenza B virus sequence data including pandemic A/H1N1 2009 virus sequences collected in 42 countries, and a total of 545 amantadine-resistant influenza virus sequences collected in Korea."^^ . + . + . + "0002989"^^ . + . + "narcis.fernandez@gmail.com" . + . + . + . + . + . + . + . + . + "agriculture" . + "genomics" . + "GXA Expt" . + . + . + "true"^^ . + . + . + "false"^^ . + "familyName"^^ . + . + "structure" . + . + . + . + "biomedical science" . + . + . + . + "Japan Registry of Clinical Trials" . + . + "NLXCELL conatins cell types with a focus on neuron types."^^ . + . + . + . + "ecn" . + "sequence" . + "Eukaryotic Linear Motif Resource" . + . + . + "life science" . + "chemistry" . + "Horizon Discovery cell line collection" . + "https://drugs.ncats.io/drug/$1"^^ . + . + "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan=$1"^^ . + . + . + . + "https://disprot.org/$1"^^ . + . + . + "The GOA (Gene Ontology Annotation) project provides high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI). This involves electronic annotation and the integration of high-quality manual GO annotation from all GO Consortium model organism groups and specialist groups."^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + "^MAR\\d{5}$"^^ . + . + . + . + "MeSH 2012" . + "ontology" . + "taxonomy" . + . + "0000005"^^ . + "Cell line databases/resources"^^ . + "^\\d+$"^^ . + . + . + . + "structural biology" . + . + . + "ark" . + . + "Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank."^^ . + . + "false"^^ . + . + "loggerhead" . + "BioCatalogue Service" . + . + . + "https://aopwiki.org/aops/$1"^^ . + . + "dhba" . + . + . + . + . + "OBO in OWL" . + . + "Regulation of Gene Expression Ontology" . + "false"^^ . + "life science" . + . + "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=$1"^^ . + "^\\d{7}$"^^ . + "^\\d+$"^^ . + . + "Structural Classification of Proteins - Unique Identifier" . + . + "https://licebase.org/?q=$1"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/XPO_$1"^^ . + "Metabolic Atlas Reaction" . + . + . + "The Open Data Commons for Spinal Cord Injury is a cloud-based community-driven repository to store, share, and publish spinal cord injury research data."^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/EHDAA2_"^^ . + "biology" . "NX_O00165"^^ . - . - "^\\w+:[\\w\\d\\.-]*$"^^ . - "Hannele Laivuori" . - "http://rdfs.org/ns/void#"^^ . - . - . - . - "gene" . - "chebi"^^ . - . - "scoro" . - . - . - . - "pathway" . - "pathway" . - "false"^^ . - . - . - . - . - "https://www.biorxiv.org/content/10.1101/"^^ . - . - . - . - . - . - "mpid" . - "false"^^ . - . - . - . - . - "dna" . - "false"^^ . - . - "http://purl.unep.org/sdg/SDGIO_$1"^^ . - . - . - . - "SNCTP000005580"^^ . - . - . - "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_"^^ . - "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1"^^ . - "http://purl.obolibrary.org/obo/ONTONEO_"^^ . - "obo" . - "obo" . - . - . - "NOAA Fisheries Species Directory" . - "genomics" . - . - "false"^^ . - "JRBC Cell Bank" . - . - "iceberg.ice" . - . - . - . - "https://www.wormbase.org/get?name=$1"^^ . - "false"^^ . - . - "^JCGG-STR\\d{6}$"^^ . - "https://www.ukrlp.co.uk/ukrlp/ukrlp_provider.page_pls_provDetails?x=&pn_p_id=$1&pv_status=VERIFIED&pv_vis_code=L"^^ . -_:N5d7232cb5c7e4b6dbfd3e210772aaf35 "helpdesk@cropontology-curationtool.org" . - . - . - . - . - . - "https://tree.opentreeoflife.org/taxonomy/browse?id=$1"^^ . - . - "ontology" . - . - . - "0440"^^ . - . - "11478"^^ . - "Epilepsy and Seizure Ontology" . - . - "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . - . - "GPCR Natural Variants database" . - . - . - . - . - "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . - . - "ivdb" . - . - . - . - . - . - . - "Online Computer Library Center WorldCat" . - "zoology" . - . - . - . - . - "https://vac.niaid.nih.gov/view?id=$1"^^ . - . - "ccdc" . - "Fyler" . - . - "protein" . - . + . + . + . + "An additional Japanese clinical trial registry"^^ . + "PTN000000026"^^ . + . + "false"^^ . + . + . + . + . + "computational biology" . + "1174"^^ . + "NCBIGene" . + "https://bio.tools/"^^ . + . + . + . + "http://www.scopus.com/record/display.url?origin=inward&eid=$1"^^ . + . + "bioinformatics" . + "bakerc@unb.ca" . + . + . + "pathway" . + "false"^^ . + . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/PROCO_$1"^^ . + "false"^^ . + . + . + . + "isfinder" . + "regulation" . + "ontology" . + "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"^^ . + . + . + . + "MSH" . + . + "CSTR is an identifier for Common Science and Technology Resources, to provide persistent identification services for the positioning, traceability, citation, statistics and evaluation of science and technology resources. "^^ . + "botany" . + . + . + . + . + . + "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=$1"^^ . + . + . + . + "http://hdl.handle.net/$1"^^ . + . + . + "Q-2958"^^ . + . + "catalog" . + "https://bioregistry.io/cst.ab:"^^ . + "translational medicine" . + "SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains."^^ . + . + . + . + "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences."^^ . + . + . + . + "false"^^ . + . + . + . + . + "NONHSAT000001"^^ . + "http://www.kegg.jp/entry/$1"^^ . + . + . + . + "^\\w\\d+$"^^ . + "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=$1"^^ . + . + "https://bioregistry.io/bpdb:"^^ . + . + . + . + . + . + "CC2(C)C\\1CCC(C)/C=C/12"^^ . + . + "^\\d{7}$"^^ . + . + "^\\d{7}$"^^ . + "EMMO is a multidisciplinary effort to develop a standard representational framework (the ontology) for applied sciences. It is based on physics, analytical philosophy and information and communication technologies. It has been instigated by materials science to provide a framework for knowledge capture that is consistent with scientific principles and methodologies. (from GitHub)"^^ . + "^A\\d+$"^^ . + . + . + "^HMDB\\d+$"^^ . + "false"^^ . + "Cell line collections (Providers)"^^ . + . + "Ontology of Organizational Structures of Trauma centers and Trauma systems" . + "BioStudies database" . + "mice" . + "lipro" . + "false"^^ . + "gfrishkoff@gsu.edu" . + . + "structure" . + "^KW-\\d{4}$"^^ . + . + "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome."^^ . + "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read."^^ . + . + "NLXFUNC covers terms for cognitive function."^^ . + "NucleaRDB" . + . + . + . + "Ontology for the Anatomy of the Insect SkeletoMuscular system" . + . + . + . + . + "OSR0818"^^ . + . + . + . + "https://glytoucan.org/Structures/Glycans/"^^ . + . + "false"^^ . + . + . + . + . . - . - "^\\d+$"^^ . - . - "https://www.sharkipedia.org/species/"^^ . - . - . - . - . - . - "false"^^ . - . - "http://www.jcvi.org/mpidb/experiment.php?interaction_id=$1"^^ . - "umbbd.compound" . - . - . - . - . - . - "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=$1"^^ . - "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$"^^ . - "Genetic Testing Registry" . - "C. elegans Small Molecule Identifier Database" . - . -_:N8b5f7ad63b6044cf8a17143270c8cbf1 "NLM Customer Service" . - "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles."^^ . - . - "agriculture" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "genomics" . - . - "protein" . - . - . - "^[a-z0-9]{32,32}$"^^ . - . - "false"^^ . - . - "false"^^ . - . - . - "subject agnostic" . - . - . - . - . - . - . - . - "Babelon is a simple standard for managing ontology translations and language profiles. Profiles are managed as TSV files, see for example https://github.com/obophenotype/hpo-translations/tree/main/babelon. The goal of Babelon as a data model and vocabulary is to capture the minimum data required to capture important metadata such as confidence and precision of translation."^^ . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/"^^ . - "^\\w+$"^^ . - "dg.anv0" . - . - . - . - "false"^^ . - . - . - "pathway" . - . - . - . - . - . - . - . - . - . - . - . - . + "WBRNAi00086878"^^ . + . + "nih initiative" . + . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information."^^ . + "small molecule" . + . + "obo" . + . + "recombinase" . + . + "IPR" . + "ppr" . + . + . + . + "The NCBI Probe Database is a public registry of nucleic acid reagents designed for use in a wide variety of biomedical research applications, together with information on reagent distributors, probe effectiveness, and computed sequence similarities."^^ . + "pathology" . + . + . + . + . + "false"^^ . + . + . + . + "false"^^ . + . + "^\\d{7}$"^^ . + . + "784"^^ . + . + . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . + "NASA GeneLab" . + "An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains"^^ . + . + "dctypes" . + . + . + . + "https://bioregistry.io/registry/$1" . + . + . + . + "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . + "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$"^^ . + . + "Fungal gross anatomy" . + "Identifier for a place in iNaturalist"^^ . + . + . + . + "oostt" . + . + "BioData Catalyst" . + "vac" . + . + "Social Insect Behavior Ontology" . + . + "JAX Mice" . + . + "ontology" . + . + . + . + . + . + . + "https://abrc.osu.edu/stocks/number/SALK_"^^ . + . + "development" . + . + . + "http://erop.inbi.ras.ru/result2.php?PepName="^^ . + . + "4"^^ . + . + . + "Gramene Taxonomy" . + . + . + . + "Tick Anatomy Ontology" . + "^WBRNAi\\d{8}$"^^ . + . + . + . + . + "jimhu@tamu.edu" . + "genome" . + "128011350"^^ . + "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns."^^ . + . + . + . + . + . + . + . + . + . + . + . + "WD_Entity" . + . + . + . + . + "false"^^ . + "sssom" . + . + . + . + "DEF"^^ . + . + "Pathguide" . + . + "biology" . + . + . + . + . + . + . + . + . +_:Nd8046430bd4b45a48b58926eac75104a "helpdesk@cropontology-curationtool.org" . + . + . + "NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing."^^ . + . + "LK99"^^ . + "10001-101"^^ . +_:N22f04e226201488a9f275ba78ac9c56b "patricia.brooks2@cms.hhs.gov" . + . + "structure" . + "https://entomology.ca.uky.edu/content/"^^ . + . + . + . + . + . + . + . + . + . + "PicTar" . + "ontology" . + . + "genome" . + . + . + "0001009"^^ . + . + "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id="^^ . + . + . + "Cell line databases/resources"^^ . + . + "0000460"^^ . + . + . + _:N2370bb67565241488d5b2870551a9eb7 . + . + "http://purl.obolibrary.org/obo/FIX_"^^ . + "false"^^ . + . + "Database of Macromolecular Movements" . + . + . + . + . + "genome" . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references families of receptors or subunits."^^ . + . + . + "wormbase" . + "false"^^ . + . + "biomedical science" . + "A database containing predicted viral miRNA candidate hairpins."^^ . + . + . + . + "ncit" . + . + "false"^^ . + "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=$1"^^ . + "true"^^ . + . + "DataONE ontology of Carbon Flux measurements for MsTMIP and LTER Use Cases"^^ . + "medicine" . + . + . + . + "huanglin36@mail.sysu.edu.cn" . + "The PAZAR database unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. It provides information on the sequence and target of individual transcription factors."^^ . + . + . + "GeneFarm is a database whose purpose is to store traceable annotations for Arabidopsis nuclear genes and gene products."^^ . + . + . + . + . + . + . + . + "genetics" . + "xmetdb" . + . + . + . + . + . + . + . + "pseudogene" . + . + "ontology" . + "DisProt" . + . + "iRefWeb is an interface to a relational database containing the latest build of the interaction Reference Index (iRefIndex) which integrates protein interaction data from ten different interaction databases: BioGRID, BIND, CORUM, DIP, HPRD, INTACT, MINT, MPPI, MPACT and OPHID. In addition, iRefWeb associates interactions with the PubMed record from which they are derived."^^ . + . + . + . + . + . + "nanotechnology" . + "P683" . + . + . + . + "false"^^ . + . + . + . + . + "Wikidata" . + . + "biomedical science" . + "http://www.ontologyrepository.com/CommonCoreOntologies/"^^ . + . + "rs11603840"^^ . + . + "^PASS\\d{5}$"^^ . + . + "organ" . + . + "Biofactoid is a web-based system that empowers authors to capture and share machine-readable summaries of molecular-level interactions described in their publications."^^ . + . + . + "life science" . + . + . + . + . + . + . + . + "A controlled vocabulary to support the study of transcription in the developing mouse brain"^^ . + . + "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . + "chembl.target" . + "structure" . + . + . + . + . + "botany" . + . + "false"^^ . + . + "silvio.tosatto@unipd.it" . + "loqate" . + . + "0000101"^^ . + . + . + "vendor" . + . + "Library of Congress Subject Headings" . + "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily."^^ . + . + . + . + "GRIN URL" . + "anatomy" . + . + . + . + . + "AGROVOC is a multilingual and controlled vocabulary designed to cover concepts and terminology under FAO's areas of interest. It is the largest Linked Open Data set about agriculture available for public use and its greatest impact is through providing the access and visibility of data across domains and languages."^^ . + . + . + "efo" . + . + . + "Porifera Ontology" . + "https://biokb.lcsb.uni.lu/fact/$1"^^ . + "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^ . + "http://purl.obolibrary.org/obo/DUO_"^^ . + . + . + . + "^\\d+$"^^ . + "ogms" . + . + "13GS"^^ . + . + . + . + . + . + . + . + "protein" . + . + . + "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch="^^ . + "anatomy" . + . + "UCR00513"^^ . + "The Biological Expression Language is a domain-specific language for describing causal, correlative, and associative relationships between a variety of biological agents."^^ . + . + . + . + . + . + . + . + . + . + . + "genome" . + . + "FaBiO, the FRBR-aligned Bibliographic Ontology" . + . + "http://www.w3.org/ns/shacl#"^^ . + . + "obo" . + . + "^\\d+$"^^ . + . + "^M\\d+$"^^ . + "ontology" . + "Yeast-cell-cycle-Irons-J-Theor-Biol-2009"^^ . + . + "false"^^ . + "cheminf" . + . + . + . + "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id=$1"^^ . + . + "http://purl.obolibrary.org/obo/MOD_$1"^^ . + . + "00042"^^ . + "Food Interactions with Drugs Evidence Ontology" . + . + . + . + . + . + . + "Metabolic Encyclopedia of metabolic and other pathways" . + . + . + . + "http://purl.obolibrary.org/obo/OBI_"^^ . + . + . + "http://purl.obolibrary.org/obo/ECTO_"^^ . + . + "ontology" . + "dna" . + . + . + . + "9861/3"^^ . + . + "July 2018"^^ . + "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist="^^ . + "Discovery tool for biomedical research resources available at institutions throughout the U.S."^^ . + . + . + . + . + . + "https://pir.georgetown.edu/cgi-bin/ipcSF?id=$1"^^ . + . + "MarRef" . + "ontology" . + . + . + . + . + "BioSample" . + "ontology" . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + "baoym@big.ac.cn" . + . + "The Food Ontology" . + . + "dashr@lisanwanglab.org" . + . + . + . + "MetaCyc" . + . + "noncodev4.gene" . + . + . + "biomedical science" . + . + . + . + . + . + "^\\d+$"^^ . + "https://books.google.com/books?id=$1"^^ . + "http://bioinfo.lifl.fr/norine/result.jsp?ID="^^ . + "25512"^^ . + . + . + "pharmgkb.drug" . + "uniprot.db" . + "19333"^^ . + "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000."^^ . + . + "^SL-\\d+$"^^ . + . + . + . + . + . + . + . + . + . + "scop.sid" . + . + . + . +_:N8c73ba65128d4714985e9de16a287c3a "Anita Ghebeles" . + . + . + . + . + "^\\d+$"^^ . + . + "John Graybeal" . + "https://www.addexbio.com/productdetail?pid=$1"^^ . + . + "67035"^^ . + . + "false"^^ . + . + . + "0471491039"^^ . + . + "dsonensh@odu.edu" . + "FB" . + . + . + . + . + . + . + . + "BioLegend is a life sciences supply vendor."^^ . + . + . + . + "^\\d+$"^^ . + . + "Marcin Pawel Joachimiak" . + . + "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species="^^ . + . + . + . + "The Plant TF database (PlantTFDB) systematically identifies transcription factors for plant species. It includes annotation for identified TFs, including information on expression, regulation, interaction, conserved elements, phenotype information. It also provides curated descriptions and cross-references to other life science databases, as well as identifying evolutionary relationship among identified factors."^^ . + . + "OGI.owl" . + . + . + . + "bio.tools" . + "false"^^ . + "obo" . + . + . + . + . + . + "RXN-14904"^^ . + "genome" . + . + . + . + . + . + "https://data.4dnucleome.org/biosources/"^^ . + . + "Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. [from RRID]"^^ . + "http://purl.obolibrary.org/obo/RBO_"^^ . + . + . + . + . + . + . + . + "obo" . + . + . + . + "Topology Data Bank of Transmembrane Proteins" . + . + "kegg.glycan" . + . + . + . + . + . + . + "gramene.growthstage" . + . + . + "expression" . + . + . + . + "^\\d+$"^^ . + . + "Indications and other conditions in drugbank"^^ . + . + . + . + . + . + "credit" . + "igsr" . + . + "^\\w+(\\_)?\\d+(\\.\\d+)?$"^^ . + "c elegans" . + . + . + "true"^^ . + . + "EBI-2307691"^^ . + . + "obo" . + . + "trait" . + "false"^^ . + . + "bind" . + . + "enm" . + . + . + . + . + . + . + . + . + . + . + . + "GenBank" . + . + . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . + "cells" . + "genome" . + "ddanat" . + "Jeff Beck" . + . + . + "Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interaction network construction, filtering, analysis, visualization and management. It integrates protein-protein interaction data from six public curated databases and builds a complete, non-redundant protein interaction dataset for six model organisms."^^ . + "edda" . + . + "Richard Scheuermann" . + "life science" . + "false"^^ . + . . - . - . + "https://w3id.org/aio/"^^ . + "Josh Moore" . + . + "enviPath is a database and prediction system for the microbial biotransformation of organic environmental contaminants. The database provides the possibility to store and view experimentally observed biotransformation pathways. The pathway prediction system provides different relative reasoning models to predict likely biotransformation pathways and products."^^ . + . + "ontology" . + "frapo" . + . + "fly" . + . + . +_:N7c8596a0bbc447a698650bd50784b249 "SEP developers via the PSI and MSI mailing lists" . + . + . + . + . + . + . + "https://bioregistry.io/vdrc:"^^ . + . + "ontology" . + . + "Enrique Blanco" . + . + . + "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements."^^ . + . + "FDB002100"^^ . + "The Event Ontology is an ontology of pathways. It classifies pathways, sub-pathways and other biological phenomena to form a DAG structure."^^ . + "obo" . + "^\\d+$"^^ . + . + . + "life science" . + "life science" . + "clinvar.submitter" . + . + "shibase" . + . + . + "jcsd" . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "obo" . + . + . + . + "http://www.w3.org/2006/time#$1"^^ . + "drug metabolism" . + . + "Ontology for Nutritional Epidemiology" . + . + "https://pir.georgetown.edu/cgi-bin/ipcSF?id="^^ . + . + "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . + "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id="^^ . + . + . + . + . + "Aceview Worm" . + "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . + . + . + . + . + . + "anatomy" . + "http://www.gramene.org/db/ontology/search?id=GRO:$1"^^ . + "^r3d\\d{9,9}$"^^ . + . + "SPU_000001"^^ . + . + "https://www.ncbi.nlm.nih.gov/gtr/conditions/"^^ . + . +_:Na03b38d0ceb5428ca2af0a10110b77e8 "helpdesk@cropontology-curationtool.org" . + "GR_GENE" . + . + . + . + "false"^^ . + . + . + "Observational Medical Outcomes Partnership" . + "https://www.animalgenome.org/CorrDB/q/?id=CorrID:"^^ . + "The Vaccine Adjuvant Compendium (VAC) was established in 2020 by the NIAID Division of Allergy, Immunology, and Transplantation to foster collaborations between NIAID-supported adjuvant researchers and the broader scientific community. The VAC displays adjuvant characteristics or metadata defined through NIAID-supported adjuvant studies to help vaccine developers identify suitable adjuvants for various vaccine indications, including immune-mediated and infectious diseases. In addition, the VAC welcomes the inclusion of adjuvant metadata generated by other research programs."^^ . + . + . + "ISRCTN10175490"^^ . + . + "gomfid" . + "http://ddinter.scbdd.com/ddinter/drug-detail/$1"^^ . + "^T[A-Z]\\d{7}$"^^ . + . + . + . + . + . + "^Os\\S+g\\d{7}$"^^ . + "molecular biology" . + "biochemistry" . + "perkinelmer" . + "https://cropontology.org/rdf/CO_360:$1"^^ . + . + "ChemSpider is a collection of compound data from across the web, which aggregates chemical structures and their associated information into a single searchable repository entry. These entries are supplemented with additional properties, related information and links back to original data sources."^^ . + . + . + . + "Simon Jupp" . + . + "mirtarbase" . + . + "rfam" . + . + "Pathway ontology" . + "bfo" . + . + "http://snomed.info/id/$1"^^ . + . + . + . + . + "^[A-Z0-9]+$"^^ . + . + . + . + . + . + . + "3304"^^ . + "https://www.sharkipedia.org/traits/$1"^^ . + . + "http://purl.obolibrary.org/obo/$1"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/RS_"^^ . + "PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation."^^ . + "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$"^^ . + "obo" . + . + . + . + "agriculture" . + . + _:N6ec02d7552d843f1b768c8c76746301a . + "GenAtlas is a database containing information on human genes, markers and phenotypes."^^ . + "0000062"^^ . + . + . + . + . + "life science" . + . + "text mining" . + "Resource" . + "false"^^ . + . + "https://ocid.ontochem.com/prefname?ocid="^^ . + . + . + . + . + "htn" . + . + . + "https://www.arraymap.org/pgx:"^^ . + "false"^^ . + "developmental biology" . + . + . + . + "false"^^ . + "https://bioregistry.io/metaregistry/ncbi/"^^ . + "drsanv0" . + "0000001"^^ . + . + "https://easychair.org/cfp/topic.cgi?tid=$1"^^ . +_:N1bbada1527ec4d42b30fec1f0ff0bdb1 "hajo.rijgersberg@wur.nl" . + "zfs" . + "genome" . + _:N559401d0120e4ad591fe8463d3f0d80f . + . + "The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology."^^ . + . + "rbca.jackson@gmail.com" . + . + "https://pubchem.ncbi.nlm.nih.gov/bioassay/"^^ . + . + . + "Signaling Gateway" . + "http://purl.obolibrary.org/obo/AEON_"^^ . + "issaku@noguchi.or.jp" . + . + . + . + . + "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."^^ . + . + . + "Bio-Pesticides DataBase" . + . + . + . + . + "Open Data Commons for Spinal Cord Injury" . + "Unipathway" . + "oral surgery" . + "SubtiWiki" . + . + "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"^^ . + . + "epidemiology" . + . + . + . + "preclinical studies" . + . + . + "NanoParticle Ontology" . + . + . + . + "false"^^ . + . + "The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both draft and complete JGI (DoE Joint Genome Institute) microbial genomes integrated with all other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. This datatype refers to taxon information."^^ . + . + "^\\d{8}$"^^ . + . + . + . + "^[a-zA-Z0-9_\\.]+$"^^ . + . + . + . + . + . + . + . + . + "biosimulations" . + . + . + . + "myco.marinum" . + . + . + "Represent chemical entities having particular CHEBI roles"^^ . + . + "Global Natural Products Social Molecular Networking Task" . + "false"^^ . + . + . + "0000339"^^ . + "false"^^ . + . + . + . + "https://cropontology.org/rdf/CO_324:$1"^^ . + "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species."^^ . + "false"^^ . + "rna" . + "^(\\d{8}|(\\w+\\d+\\w+))$"^^ . + . + . + "http://purl.obolibrary.org/obo/CLO_"^^ . + . + "https://www.ncbi.nlm.nih.gov/clinvar/submitters/$1"^^ . + . + . + . + "TC010103"^^ . + "Online Mendelian Inheritance in Animals" . + . + "true"^^ . + "false"^^ . + . + "FuncBase Fly" . + "chemistry" . + "Unified Phenotype Ontology" . + "goccid" . + "https://biopragmatics.github.io/providers/scomp/"^^ . + . + "https://www.ebi.ac.uk/merops/cgi-bin/clansum?clan="^^ . + . + . + . + . + "^\\w+$"^^ . + . + . + . + "^[0-9a-z_:\\.-]+$"^^ . + . + . + . + "Tribolium Genome Database -- Insertion" . + . + "^PR[0-9]{6}$"^^ . + "uniparc" . + . + . + "biology" . + . + "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1"^^ . + . + . + "Shorthand representations of languages and their subtypes"^^ . + . + "ontology" . + "small molecule" . + . + "https://biopragmatics.github.io/providers/goche/"^^ . + "The International Harmonization of Nomenclature and Diagnostic criteria" . + "pathbank" . + . + . + . + . + . + "gaoj@mskcc.org" . + . + . + . + . + . + "MedlinePlus Genetics contains detailed information about the effects of genetic variation on human health, covering more than 1,300 genetic conditions and 1,400 genes, all of the human chromosomes, and mitochondrial DNA (mtDNA)."^^ . + . + . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1"^^ . + . + . + "Database of Quantitative Cellular Signaling: Pathway" . + . + "0000003"^^ . + . + "false"^^ . + "false"^^ . + "EU Clinical Trials" . + "grouping" . + "bioinformatics" . + . + . + "roleo" . + . + . + . + . + "genome" . + "zmp@ebi.ac.uk" . + "applied microbiology" . + . + "P4355"^^ . + . + "false"^^ . + . + . + "dispositions" . + . + "IntellectualContribution"^^ . + . + "OMIM" . + . + . + "UM-BBD_reactionID" . + . + . + . + "false"^^ . + "medicinal chemistry" . + . + "anatomy" . + . + "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." . + "ontology" . + "grassbase" . + . + "false"^^ . + . + "KEGG GLYCAN, a part of the KEGG LIGAND database, is a collection of experimentally determined glycan structures. It contains all unique structures taken from CarbBank, structures entered from recent publications, and structures present in KEGG pathways."^^ . + "enzyme" . + "animal" . + . + . + "translational medicine" . + "https://www.bgee.org/gene/$1"^^ . + . + . + "http://purl.org/dc/dcmitype/$1"^^ . + . + "^\\w+(\\.\\d+)?(\\.\\d+)?$"^^ . + . + . + . + . + "https://biopragmatics.github.io/providers/dmba/"^^ . + . + . + . + . + "https://bioregistry.io/fbol:"^^ . + "false"^^ . + . + . + . + . + "protein" . + . + . + . + . + "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId=$1"^^ . + "^\\w+:[\\w\\d\\.-]*$"^^ . + "PharmGKB Drug" . + . + . + "http://vega.sanger.ac.uk/[?species_name]/Gene/Summary?g="^^ . + . + . + "DOULIX lab-tested standard biological parts, in this case linear double stranded DNA sequences."^^ . + "^FOOD\\d+$"^^ . + . + . + . + "genome" . + "Pantelis Topalis" . + . + . + . + . + . + . + . + "https://bioregistry.io/proteomicsdb.protein:"^^ . + . + . + . + . + . + . + "^\\d+$"^^ . + "^VB\\.[A-Za-z][A-Za-z]\\..*$"^^ . + . + "NCITm" . + . + "WBPhenotype" . + . + . + . + . + . + . + "^\\d+$"^^ . + "false"^^ . + . + "go.chemical" . + "https://doulix.com/constructs/"^^ . + . + . + . + . + "Korean Cell Line Bank" . + . + "50018"^^ . + "nuclear" . + "ChEBI"^^ . + "false"^^ . + . + . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page_IME.php?ime_id=$1_IME"^^ . + . + "proteomics" . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/WBls_"^^ . + "life science" . + . + "false"^^ . + . + . + . + . + . + . + "cito" . + . + "HGNC_GROUP" . + . + "MMP743597.11"^^ . + . + "false"^^ . + . + . + "false"^^ . + "infectious disease medicine" . + "The genome assembly database contains detailed information about genome assemblies for eukaryota, bacteria and archaea. The scope of the genome collections database does not extend to viruses, viroids and bacteriophage."^^ . + . + "^PRO_[0-9]{10}$"^^ . + . + "molecular biology" . + "genetics" . + . + . + . + . + . + "epigenetics" . + "dna" . + . + . + "https://biokb.lcsb.uni.lu/fact/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . + "http://stormo.wustl.edu/ScerTF/details/$1"^^ . + . + . + . + . + . + . + "biology" . + . + . + . + . + . + . + "life sciences" . + . + "^\\d{7}$"^^ . + . + "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . + . + . + . + . + "^[A-Z0-9]+$"^^ . + . + . + . + . + "alayne.cuzick@rothamsted.ac.uk" . + . + . + . + "obo" . + . + . + . + "false"^^ . + "100000000000001"^^ . + . + . + "DB-0174" . + "https://rrid.site" . + . + "false"^^ . + . + "https://bioregistry.io/elm:"^^ . + . +_:Nbf9b965aeb1945c0929cabc018829bf8 "European Food Safety Authority" . + "^[A-Z_a-z]+$"^^ . + . + . + . + . + . + "VIPERdb" . + "false"^^ . + "FBcv" . + "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings."^^ . + . + . + "RiceNetDB Reaction" . + "Genome Properties" . + . + "^\\d{7}$"^^ . + "PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains."^^ . + . + . + "The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space. The CCF Ontology consists of three major ontologies. The Biological Structure Ontology records anatomical structures, cell types, and biomarkers (ASCT+B) and the relationships between them. The ASCT+B tables are authored by human experts using templated Google Sheets. The biomarkers, cell types, and anatomical structures are mapped to existing ontologies (Uberon/FMA, CL, HGNC) whenever possible. All relationships between anatomical structures and from cell types to anatomical structures are valid Uberon and CL relationships. The Spatial Ontology defines the shape, size, location, and rotation of experimental tissue and data major anatomical structures in the 3D Reference Object Library. The Specimen Ontology captures the sex, age, and other information on donors that provided tissue data used in the construction of the HRA."^^ . + . + "protein" . + . + . + . + "Metabolites in the Xenobiotics Metabolism Database."^^ . + "Bgee family" . + . + "J0705A10"^^ . + . + . + "registry" . + "hao" . + "Neuroscience Multi-Omic BRAIN Initiative Data" . + "^[1-9]\\d*$"^^ . + . + . + . + "metaproteomics" . + "rna" . + . + . + "false"^^ . + . + "false"^^ . + . + . + "507568"^^ . + . + . + . + . + . + . + . + . + "false"^^ . . - . - . - . - "dbest" . - "Cell line databases/resources"^^ . - . - "^[0-9][A-Za-z0-9]{3}$"^^ . - . - "genome" . - "^NONHSAT\\d{6}$"^^ . - . - . - "https://www.uniprot.org/journals/$1"^^ . - "ontology" . - . - "PaxDb Protein" . - "genomics" . -_:N09955625048e48879dec33c0f3843916 "Frédérick Giasson" . - . - "nist" . - . - . - . - "obo" . - . -_:Nf2b505d63be24469901c6814285d166b "Patricia Brooks" . - "clinvar.record" . - . - "http://www.w3.org/ns/activitystreams#"^^ . - "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)."^^ . - "EuroFir (European Food Information Resource Network), the world-leading European Network of Excellence on Food Composition Databank systems, is a partnership between 48 universities, research institutes and small-to-medium sized enterprises (SMEs) from 25 European countries."^^ . - "BRENDA Ligand" . - . + "mirnao" . + "agriculture" . + . + . + . + "false"^^ . + "anatomy" . + . + "gene" . + . + "https://discover.pennsieve.io/package/$1"^^ . + "http://mirbase.org/cgi-bin/mature.pl?mature_acc=$1"^^ . + "protein" . + . + . + . + . + . + "cell biology" . + "syoid" . + "^COG\\d+$"^^ . + "NCATS Drugs" . + "unists" . + . + "structural biology" . + . + . + . + "false"^^ . + "epidemiology" . + . + . + . + . + . + "false"^^ . + "http://ctdbase.org/detail.go?type=chem&acc=$1"^^ . +_:N4b3abacffda54ddcb05fdf06621a953e "interhelp@ebi.ac.uk" . + "International Molecular Exchange" . + "false"^^ . + . + . + . + "Google Scholar provides a simple way to broadly search for scholarly literature. You can search across many disciplines and sources: articles, theses, books, abstracts and court opinions, from academic publishers, professional societies, online repositories, universities and other web sites."^^ . + . + . + . + . + . + "https://datalab.rwth-aachen.de/MINDER/resource/$1"^^ . + "SNOWMEDCT_US_2018_03_01" . + "Applied Biological Materials cell line products" . + "^\\d{7}$"^^ . + . + "^[A-Z]{2}\\d+$"^^ . + "Zach Landis-Lewis" . + . + . + . + "annika.jahnke-bornemann@uni-hamburg.de" . +_:Nf607a80abc1c4f09ab04e73093c67475 "helpdesk@cropontology-curationtool.org" . + "^AC[0-9]{8}$"^^ . + . + "53504"^^ . + "18125"^^ . + "gene" . + . + "false"^^ . + "Werner Müller" . + . + "NCBI_GeneID" . + . + . + . + . + . + . + "rgd" . + . + . + "^\\d{6}$"^^ . + . + "anatomy" . + . + "Database of Spatially Interacting Motifs in Proteins" . + . + "false"^^ . + . + . + "reto" . + "https://bioregistry.io/matrixdb.association:"^^ . + "http://www.genome.jp/dbget-bin/www_bget?cpd:$1"^^ . + . + . + . + . + . + . + . + "support@bioontology.org" . + . + . + . + "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . + . + "genetics" . + "SABIO-RK Reaction" . + . + "^\\d{7}$"^^ . + "human" . + . + . + . + . + "rnamods" . + . + . + . + "https://cellrepo.ico2s.org/repositories/"^^ . + . + . + . + "false"^^ . + . + "The PSCDB (Protein Structural Change DataBase) collects information on the relationship between protein structural change upon ligand binding. Each entry page provides detailed information about this structural motion."^^ . + "protein" . + "0000001"^^ . + . + "^\\d+$"^^ . + "http://purl.obolibrary.org/obo/RBO_$1"^^ . + . + . + . + "biopragmatics/bioregistry/416"^^ . + . + "NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems/services (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.\n\nKnowledge Organization Systems/Services (KOS) model the underlying semantic structure of a domain. Embodied as Web-based services, they can facilitate resource discovery and retrieval. They act as semantic road maps and make possible a common orientation by indexers and future users (whether human or machine). -- Douglas Tudhope, Traugott Koch (2004)."^^ . + . + . + . + "worldavatar.kin" . + . + . + "^\\d+$"^^ . + "http://purl.obolibrary.org/obo/STATO_"^^ . + "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . + "^\\d+$"^^ . + . + . + "MACiE (Mechanism, Annotation and Classification in Enzymes) is a database of enzyme reaction mechanisms. Each entry in MACiE consists of an overall reaction describing the chemical compounds involved, as well as the species name in which the reaction occurs. The individual reaction stages for each overall reaction are listed with mechanisms, alternative mechanisms, and amino acids involved."^^ . + . + "Identifiers for proposals/projects at the Joint Genome Institute"^^ . + . + "ontology" . + "true"^^ . + "3355"^^ . + . + . + . + . + . + "research" . + "dbgap" . + . + "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym="^^ . + "Ligand Expo" . + . + . + . + "bcio" . + "https://tools.ietf.org/rfc/rfc$1"^^ . + . + . + . + "phismith@buffalo.edu" . + "life science" . + "http://noctua.geneontology.org/editor/graph/gomodel:"^^ . + . + . + . + "karr@mssm.edu" . + "uberon" . + . + "https://www.ebi.ac.uk/gxa/experiments/$1"^^ . + . + . + "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains taxonomic information."^^ . + "JWS Online" . + . + . + . . - . - . - . - . - "https://www.inaturalist.org/observations/"^^ . - . - . - "vario" . - . - . - "https://www.ebi.ac.uk/metagenomics/analyses/$1"^^ . - . - "false"^^ . - "fbsp" . - . - . - "https://ontology.iedb.org/ontology/ONTIE_$1"^^ . - . - "^\\d{7}$"^^ . - "http://purl.obolibrary.org/obo/CMF_"^^ . - "EMEA/H/C/000181"^^ . - . - "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The compound data set provides information regarding the reactions in which a compound participates as substrate, product or modifier (e.g. inhibitor, cofactor), and links to further information."^^ . - . - . - . - . - . - "Os01t0883800-02"^^ . - "http://emmo.info/emmo#EMMO_$1"^^ . - . - . - "Gianni Cesareni" . - . - . - . - . - "0000062"^^ . - . - "fairsharing" . - . - "^\\d+$"^^ . - . - "3dmet" . - . - . - . - "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . - "The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/protein/"^^ . - . - _:Nb4dfa24385e947998230af7585b324a6 . - "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name="^^ . - . - "gbif" . + "antibodies" . + . + . + . + . + . + "https://www.abmgood.com/search?query=$1"^^ . + "Human developmental anatomy, abstract version" . + "biomedical science" . + "^rx[0-9]{5}$"^^ . + . + . + . + . + . + . + . + . + . + . + . + "medicine" . + "developmental biology" . + "The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year."^^ . + . + . + "small molecule" . + . + "https://bioregistry.io/cellbank.australia:"^^ . + . + . + . + "ivdb" . + . + "false"^^ . + . + . . - . - "^\\d+$"^^ . - . - "genes" . - . - . - . - . - . - "Collection"^^ . - . - "Causal_Graphical_Model"^^ . - "Genetic and Rare Diseases Information Center" . - . - . - . - "nlx.qual" . - . - . - "protein" . - . - . - "fernanda.farinelli@gmail.com" . - . - . - . - "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands."^^ . - . - "http://scop.berkeley.edu/sunid="^^ . - . - . - "microbial" . - "animal husbandry" . + . + . + . + . + "icd10pcs" . + . + "T0599"^^ . + . + "dna" . + "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM="^^ . + . + . + . + "https://modeldb.science/$1"^^ . + . + . + "http://purl.obolibrary.org/obo/PPO_$1"^^ . + . + . + . + "environmental science" . + . + "ontology" . + . + "genome" . + . + . + "https://doulix.com/biomodules/$1"^^ . + . + . + "vbrc" . + . + . + . + "HL7 V2 Code Systems" . + . + . + . + "91792"^^ . + "https://cropontology.org/rdf/CO_323:"^^ . + . + . + . + . + "genomics" . + "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . + . + "Overview of the Web Ontology Language (OWL) which provides an introduction to OWL by informally describing the features of each of the sublanguages. "^^ . + . + . + "https://bioregistry.io/cghdb:"^^ . + . + . + . + . "false"^^ . - . - . - . - "John Beverly" . - . - . - "Genomic Epidemiology Ontology" . - . - . - . - "^\\d+$"^^ . - . - "http://www.radiomics.org/RO/"^^ . - "FMA_RETIRED" . - . - . - . - . - . - . - . - "hc.din" . - "https://go.drugbank.com/metabolites/$1"^^ . - "Database of rare diseases and related terms, including symptoms, healthcare resources, and organizations supporting research of the disease."^^ . - "http://www.ontology-of-units-of-measure.org/resource/om-2/$1"^^ . - . - "biomedical science" . - . - . -_:Ne15f697bb7944ad0802de233570457b3 "biomodels-net-support@lists.sf.net" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "nlfff" . - "Sugar Kelp trait ontology" . - "CLPUB00496"^^ . - "life science" . - . - . - . - . - . - . - . - "imp10873"^^ . - "^\\d{7}$"^^ . - . - "FDB002100"^^ . - "PRO" . - "vandf" . - . - . - . - "kegg.reaction" . - . - . - . - . - . - . - "Life cycle stages for Platynereis dumerilii"^^ . - . - . - . - . - "http://metnetonline.org/browse_pathway2.php?pthID="^^ . - . - . - . - . - "unichem" . - . - "oryzabase.strain" . - . - . - . - . - "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html"^^ . - "https://www.ncbi.nlm.nih.gov/protein/"^^ . - "anatomy" . - . - "go" . - "fossilworks.taxon" . - "preclinical studies" . - . - "bioinformatics" . - . - "life science" . - . - . - "life science" . - . - "grouping" . - . - . - "http://purl.obolibrary.org/obo/DISDRIV_"^^ . - . - "pigqtldb" . - "false"^^ . - "sequence" . - "life science" . - . - "biochemistry" . - "Nicolas Matentzoglu" . - "fish" . - . - . - . - "HL7 V2 Code Systems" . - . - "An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the Drosophila melanogaster."^^ . - "Mauno Vihinen" . - . - "^\\d{7}$"^^ . - . - . - . - . - "true"^^ . - . - "imsr.apb" . - "ontology" . - . - "ideal" . - . - . - . - . - . + . + . + "gxa.gene" . + "false"^^ . + . + "transcriptomics" . + "adult" . + . + . + . + . + . + "http://cgsc.biology.yale.edu/Site.php?ID=$1"^^ . + "chemical biology" . + . + . + "0000070"^^ . + . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."^^ . + . + . + . + . + . + . + . + . + . + . + "life science" . + "genomics" . + . + "false"^^ . + . + . + "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid="^^ . + "https://bioregistry.io/mesh.2013:"^^ . + "DBSALT001211"^^ . + . + "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=$1"^^ . + "obo" . + . + . + . + . + "gdc" . + . + . + . + "Common Anatomy Reference Ontology" . + "rism" . + . + "http://imgt.org/IMGTPrimerDB/Check_PrDB.pl?numacc0=$1&origin=view&source=PrList"^^ . + . + . + . + . + "epidemiology" . + . + . + "ImMunoGeneTics database covering immunoglobulins and T-cell receptors" . + . + "UCR00226"^^ . + "ontology" . + "Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. [from RRID]"^^ . + "true"^^ . + . + "PLANA, the PLANarian Anatomy Ontology, encompasses the anatomy of developmental stages and adult biotypes of Schmidtea mediterranea."^^ . + . + . + "rrid" . + . + "false"^^ . + . + "identifier for a source/publication venue (journal, conference, etc) in Scopus"^^ . + "https://animaldiversity.org/accounts/$1"^^ . + . + . + . + "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1"^^ . + . + "^\\d+$"^^ . + "PSI Extended File Format" . + . + . + "C023"^^ . + . + "obo" . + "The Funder Registry is an open registry of persistent identifiers for grant-giving organizations around the world."^^ . + . + . + . + . + . + . + . + "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=$1"^^ . + . + "genetically modified pig" . + . + . + . + . + "human" . + . + . + . + "Wheat ontology" . + . + . + . + . + . + "false"^^ . + "aero" . + . + "Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source."^^ . + "Viral Bioinformatics Resource Center" . + "false"^^ . + "nbn" . + . + . + . + . + "kegg" . + . + "isbn" . + "^\\d+$"^^ . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OGG_$1"^^ . + . + "https://metazoa.ensembl.org/id/"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/SYMP_"^^ . + "Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]"^^ . + . + . + "immunology" . + . + . + . + . + . + "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid="^^ . + "sequence" . + . + "gene" . + "true"^^ . "^[A-Z0-9]{6,7}$"^^ . - . - . - . - . - . - "itiswebmaster@itis.gov" . - . - "true"^^ . - . - . - . - . - . - . - . - . - . - . - "bootstrep" . - . -_:N60032d4dab624076aa02184b78b7efd2 "helpdesk@cropontology-curationtool.org" . - "microbiology" . + . + . + . + "The US National Cancer Institute (NCI) maintains and administers data elements, forms, models, and components of these items in a metadata registry referred to as the Cancer Data Standards Registry and Repository, or caDSR."^^ . + . + . + . + . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession."^^ . + . + "false"^^ . + "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own subclassification hierarchy. All lipids in the LIPID MAPS Structure Database (LMSD) have been classified using this system and have been assigned LIPID MAPS ID's which reflects their position in the classification hierarchy."^^ . + "small molecule" . + . + . + . + "https://www.eionet.europa.eu/gemet/en/concept/"^^ . + . + . + . + . + . + . + . + "culture" . + . + . + . + . + . + . + . + "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460]."^^ . + . + . + . + . + . + . + "The Comparative Data Analysis Ontology (CDAO) provides a framework for understanding data in the context of evolutionary-comparative analysis. This comparative approach is used commonly in bioinformatics and other areas of biology to draw inferences from a comparison of differently evolved versions of something, such as differently evolved versions of a protein. In this kind of analysis, the things-to-be-compared typically are classes called 'OTUs' (Operational Taxonomic Units). The OTUs can represent biological species, but also may be drawn from higher or lower in a biological hierarchy, anywhere from molecules to communities. The features to be compared among OTUs are rendered in an entity-attribute-value model sometimes referred to as the 'character-state data model'. For a given character, such as 'beak length', each OTU has a state, such as 'short' or 'long'. The differences between states are understood to emerge by a historical process of evolutionary transitions in state, represented by a model (or rules) of transitions along with a phylogenetic tree. CDAO provides the framework for representing OTUs, trees, transformations, and characters. The representation of characters and transformations may depend on imported ontologies for a specific type of character."^^ . + . + "mesh.2013" . + "http://geneontology.org/docs/gene-product-information-gpi-format/#$1"^^ . + . + "morpheus" . + "false"^^ . + . + "dg5b0d" . + . + . + . + . + . + . + "NLXFUNC" . + . + "gene" . + "24867"^^ . + "false"^^ . + . + "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=$1"^^ . + "Kim Durante" . + . + "LMPR0102010012"^^ . + "^\\d+$"^^ . + . + . + . + . + . + "ecology" . + "false"^^ . + "Hepatitis C Virus Database Project" . + . + "TaxonomyID" . + "ido" . + . + . + . + . + . + "00023232"^^ . + . + . + "^\\w+$"^^ . + "https://cgap.nci.nih.gov/Pathways/BioCarta/"^^ . + "Kinetic Simulation Algorithm Ontology" . + . + "https://www.wikidata.org" . + . + "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information."^^ . + "false"^^ . + . + . + "https://proteininformationresource.org/cgi-bin/resid?id="^^ . + . + . + "http://purl.obolibrary.org/obo/LBO_"^^ . + "false"^^ . + . + . + . + . + . + "life science" . + . + . + . + "0000086"^^ . + "^\\d+$"^^ . + . + . + . + . + "rebase" . + . + . + . + . + . + . + . + "dpo" . + "PRI10"^^ . + "false"^^ . + . + . + "http://purl.obolibrary.org/obo/APO_"^^ . + "MimoDB" . + "^\\w+(\\-|\\.|\\w)*$"^^ . + "https://tree.opentreeoflife.org/taxonomy/browse?id=$1"^^ . + . + . + "FlyBase internal citation identifiers"^^ . + . + "https://www.pombase.org/gene/$1"^^ . + . + "http://purl.obolibrary.org/obo/PdumDv_"^^ . + "life science" . + . + . + . + . + . + . + . + "preclinical studies" . + . + . + . + . + "The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)"^^ . + . + . + . + "0000199"^^ . + . + "amalik@ebi.ac.uk" . + "https://www.uniprot.org/locations/$1"^^ . + . + "https://www.ebi.ac.uk/biosamples/sample/"^^ . + . + . + . + . + . + . + . + . + . + . + . + "^\\d{4}-\\d{3}[\\dX]$"^^ . + . + . + "ontology and terminology" . + . + "biomedical science" . + . + "GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)"^^ . + . + . + "knowledge and information systems" . + "false"^^ . + "drug-drug interactions" . + . + . + . + "http://purl.obolibrary.org/obo/MONDO_$1"^^ . + . + . + "hesa" . + . + . + "preclinical studies" . + . + "^ERM[0-9]{8}$"^^ . + "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features."^^ . + . + "OBO Metadata Ontology" . + "https://www.ebi.ac.uk/gxa/genes/$1"^^ . + "environmental science" . + "ontology" . + . + . + "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id="^^ . + "An application ontology for use with miRNA databases."^^ . + . + "false"^^ . + . + . + . + . + . + "repository" . + "edam.data" . + "false"^^ . + "ontology" . + "rs" . + . + . + "http://purl.obolibrary.org/obo/EHDA_$1"^^ . + . + . + . + "ATL98012"^^ . + . + . + . + "March 2017 version "^^ . + . + "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=$1"^^ . + "http://www-bionet.sscc.ru/sitex/index.php?siteid="^^ . + "laevis" . + "http://purl.obolibrary.org/obo/UO_"^^ . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/UBERON_$1"^^ . + "nemo" . + "genomics" . + . + . + . + . + . + "https://www.rebuildingakidney.org/id/$1"^^ . + "Protein modification" . + "SASDAX8"^^ . + . + "transyt" . + . + . + . + . + "WikiGenes" . + "homd.taxon" . + . + "obo" . + "https://w3id.org/oc/corpus/$1"^^ . + "BeAn 70563"^^ . + . + "EC_CODE" . + . + . + "civic.gid" . + "https://mediadive.dsmz.de/solutions/$1"^^ . + "genomics" . + . + "BioProject" . + "MFO_0000001"^^ . + . + "ACYPI000159"^^ . + . + . + . + . + "seo" . + . + . + "https://fairsharing.org/" . + . + . + . + . + . +_:N1dbd0a5640f74b8fbcc7f4ee551d82ae "Kota Ninomiya" . + "rpcec" . + . + . + "^\\d+$"^^ . + . + "salk" . + "gene expression" . + . + "false"^^ . + . + "donny@polyneme.xyz" . + "false"^^ . + . + . + . + . + . + . + "https://bioregistry.io/flybrain.ndb:"^^ . + . + . + "genome" . + . + "ontology" . + . + . + . + . + . + "ecocyc" . + . + . + . + "false"^^ . + . + . + . + "pdbechem" . + . + . + . + . + . + . + . + "carrine.blank@umontana.edu" . + . + "earth science" . + . + . + . + . + "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"^^ . + . + . + "life science" . + . + "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/$1"^^ . + "Mouse adult gross anatomy" . + "https://www.mlcommons.org/mlc-id/"^^ . + "http://www.alzgene.org/geneoverview.asp?geneid=$1"^^ . + . + . + . + . + . + "has canonical prefix" . + "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." . + "Alan Wood's Pesticides" . + . + . + "http://aims.fao.org/aos/agrovoc/c_$1"^^ . + . + . + . + . + . + "false"^^ . + . + "sphn" . + . + "anatomy" . + . + . + "COlleCtion of Open Natural ProdUcTs" . + "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=$1"^^ . + . + . + "eo" . + . + . + . + "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."^^ . + "experiment" . + "social media" . + "false"^^ . + . + "cdao" . + "false"^^ . + . + . + . + . + . + "ontology" . + . + "^[a-z0-9]+$"^^ . + . + "^\\d+$"^^ . + . + "TOKU-E Cell-culture Database" . + . + . + . + "omiabis" . + . + . + . + . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . + . + "Jessica Kissinger" . + . + . + "Anatomical Entity Ontology" . + . + "protein" . + . + "chebi" . + "developmental biology" . + "immds"^^ . + "http://purl.org/cerif/frapo/$1"^^ . + . + "jRCTs041220087"^^ . + . + "https://www.gwascentral.org/marker/"^^ . + "PepBank Peptide Database" . + "transportdb" . + "Dr Paul Schofield" . + "molecular biology" . + "medicine" . + "https://comptox.epa.gov/dashboard/"^^ . + . + "Current Procedural Terminology" . + "http://dictybase.org/gene/$1"^^ . + . + . + . + . + . + "doi" . + . + "A registry of code systems (each are small vocabularies themselves) used by HL7 international, related to FHIR."^^ . + . + "obo" . + . + . + . + . + . + . + "false"^^ . + . + "nembase" . + . + . + . + "BioSchemas" . + . + "life sciences" . + . + . + . + "https://www-is.biotoul.fr/scripts/ficheIS.php?name="^^ . + "sitex" . + . + . + . + . + "sheepqtldb" . + "false"^^ . + . + "SNOMEDCT_US_2022_12_31" . + "^\\d{7}$"^^ . + . + . + . + . + "false"^^ . + "^\\d{8}$"^^ . + . + "^\\d{7}$"^^ . + . + "^CL\\d+$"^^ . +_:Nbd3b87c19aed4ac69586246a536ac439 "pierre.sprumont@unifr.ch" . + . + . + . + . + . + . + . + . + "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name="^^ . + . + "tgbugs@gmail.com" . + . + . + "false"^^ . + . + . + . + . + "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+$1"^^ . + . + . + "odor" . + "Carissa Park" . + . + . + "https://cropontology.org/rdf/CO_330:"^^ . + . + "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/HLA is a database for sequences of the human MHC, referred to as HLA. It includes all the official sequences for the WHO Nomenclature Committee For Factors of the HLA System. This collection references allele information through the WHO nomenclature."^^ . + . + . + "false"^^ . + . + "Contains entries for various database identifiers" . + "^\\d+$"^^ . + . + "ega.dataset" . + . + "storedb.study" . + . + "Agricultural Online Access" . + "https://bioregistry.io/metaregistry/$1"^^ . + . + . + "pid.pathway" . . - "https://cropontology.org/rdf/CO_338:"^^ . - "^\\d{8}$"^^ . - . - . - "virology" . - . - . - "bioinformatics" . - . - "ccrid" . - . - "http://emmo.info/emmo/cif-core#"^^ . - "slime-mould" . - "http://purl.obolibrary.org/obo/OHMI_$1"^^ . - "^\\w\\d{4}\\w\\d{2}(\\-[35])?$"^^ . - . - "prosite" . - "A type for entries in the Bioregistry's collections" . - . - . - "obo" . - "^PR\\d{5}$"^^ . - "https://repeatsdb.org/protein/"^^ . - "39421"^^ . - "5013"^^ . - . - . - . - . - . - "bugbase.expt" . - "HS000015122"^^ . - "false"^^ . - "http://www.bioinfo.org/NONCODEv4/show_gene.php?id="^^ . - "^\\d{8}$"^^ . - "MatrixDB" . - . - . - "expression" . - "metabolomics" . - "imke.tammen@sydney.edu.au" . - . - "CAS Registry Number" . - "false"^^ . - "crossref.funder" . - . - . - . - "068078"^^ . - . - "false"^^ . - "obo" . - . - "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY)\\d+$"^^ . - . - . - . - "https://pharmacome.github.io/conso/$1"^^ . - "http://purl.obolibrary.org/obo/VSAO_$1"^^ . - . - "false"^^ . - . - . - . - . - . - "E-cyanobacterium Experimental Data" . - . - . - . - . - . - . - . - . - . - "plasmodb" . - . - . - "101"^^ . - "decimal"^^ . - "Evidence ontology" . - "UniProt journal" . - . - "depod@embl.de" . - . - . - "SMID-DB" . - . - "0000011"^^ . - . - . - . - . - "dna" . - "MNXC15"^^ . - . - . - "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . - "spbase" . - . - . - . - . - "false"^^ . - "A controlled vocabulary to support the study of transcription in the developing mouse brain"^^ . - "expression" . - . - "0001191"^^ . - . - . - . - . - "false"^^ . - "554"^^ . - "The mission of the Clinical Trials Registry-India (CTRI) is to ensure that all clinical trials conducted in India are prospectively registered, i.e. before the enrolment of the first participant. Additionally, post-marketing surveillance studies, BA/BE studies as well as clinical studies as part of PG thesis are also expected to be registered in the CTRI. (from homepage)\n\nNote that the identifier in this semantic space is not the one used in the webpages"^^ . + . + . + . + "^\\d{7}$"^^ . + "genomics" . + "hpa" . + "^\\d+$"^^ . + . + . + . + . + "^\\d{7}$"^^ . + "Global biodiversity database on finfishes. It offers a wide range of information on all species currently known in the world: taxonomy, biology, trophic ecology, life history, and uses, as well as historical data reaching back to 250 years."^^ . + "http://jaxmice.jax.org/strain/$1.html"^^ . + . + . + . + . + . + . + . + . + "identifier for an educational organization issued by the UK Register of Learning Providers"^^ . + . + . + "The Provider Characteristics code set is for use with health care provider information for enrollment and credentialing transactions and their corresponding responses. It is intended to provide codified responses to questions presented to a health care provider applying to or registering with an entity and to report the outcome of such application or registration. It may also be used for responses to inquiries regarding provider participation or registration in a program or plan."^^ . + . + . + . + . + "false"^^ . + . + "https://www.signalingpathways.org/datasets/dataset.jsf?doi="^^ . + "atc" . + . + . + . + . + . + "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1"^^ . + "dna" . + "Human Induced Pluripotent Stem Cells Initiative" . + . + "false"^^ . + "http://n2t.net/ark:$1"^^ . + "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations."^^ . + . + . + "https://www.ncbi.nlm.nih.gov/homologene/$1"^^ . + . + . + "Melanie Courtot" . + . + . + . + "false"^^ . + "hydrogeology" . + "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. PANTHER tree is a key element of the PANTHER System to represent ‘all’ of the evolutionary events in the gene family. PANTHER nodes represent the evolutionary events, either speciation or duplication, within the tree. PANTHER is maintaining stable identifier for these nodes."^^ . + . + "kinetics" . + "false"^^ . + . + "0000252"^^ . + . + . + . + . + "ontology" . + . + "^[0-9]{9}$"^^ . + . + . + "13"^^ . + "smart" . + . + . + . + "http://www.wikipathways.org/instance/"^^ . + . + . + "http://sabiork.h-its.org/newSearch?q=ecnumber:$1"^^ . + "rfc" . + . + . + . + . + "Human Disease Ontology" . + . + . + . + "171"^^ . + "semantic web" . + "^IS\\w+(\\-\\d)?$"^^ . + "life science" . + . + "ncbibook" . + "biology" . + . + "tair.locus" . + . + "MIMAT0046872"^^ . + . + . + . + "KEGG Orthology" . + . + "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=$1"^^ . + . + . + . + . + . + "false"^^ . + "IRCT20080904001199N7"^^ . + . + "edam" . + . + . + "Jörg Wicker" . + . + "classification" . + . + . + "47419"^^ . + "Ontology for MicroRNA Target" . + "false"^^ . + . + . + . + . + . + . + . + . + "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC="^^ . + "faseb list" . + . + "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=$1"^^ . + "^[a-z_A-Z]+$"^^ . + "erik.vannimwegen@unibas.ch" . + . + . + . + "structure" . + . + . + "Oryzabase Stage" . + . + . + . + . + . + "false"^^ . + . + . + . + "dna" . + . + . + "false"^^ . + "A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes."^^ . + "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . + . + . + . + . + "International Geo Sample Number" . + . + "https://www.ebi.ac.uk/pdbsum/$1"^^ . + . + . + "Cell line collections (Providers)"^^ . + . + . + "ontology" . + "The Blood Profiling Atlas in Cancer (BloodPAC) supports the management, analysis and sharing of liquid biopsy data for the oncology research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies for cancer treatment and prevention. The data commons supports cross-project analyses by harmonizing data from different projects through the collaborative development of a data dictionary, providing an API for data queries and download, and providing a cloud-based analysis workspace with rich tools and resources."^^ . + . + "The Health Care Provider Taxonomy code set is an external, nonmedical data code set designed for use in an electronic environment, specifically within the ASC X12N Health Care transactions. This includes the transactions mandated under HIPAA.\n\nThe taxonomy code is a unique alphanumeric code, ten characters in length. The code set is structured into three distinct \"Levels\" including Provider Grouping, Classification, and Area of Specialization.\n\n - **Level I, Provider Grouping** A major grouping of service(s) or occupation(s) of health care providers. For example: Allopathic & Osteopathic Physicians, Dental Providers, Hospitals, etc.\n - **Level II, Classification** A more specific service or occupation related to the Provider Grouping. For example, the Classification for Allopathic & Osteopathic Physicians is based upon the General Specialty Certificates as issued by the appropriate national boards. The following boards will however, have their general certificates appear as Level III areas of specialization strictly due to display limitations of the code set for Boards that have multiple general certificates: Medical Genetics, Preventive Medicine, Psychiatry & Neurology, Radiology, Surgery, Otolaryngology, Pathology.\n - **Level III, Area of Specialization** A more specialized area of the Classification in which a provider chooses to practice or make services available. For example, the Area of Specialization for provider grouping Allopathic & Osteopathic Physicians is based upon the Subspecialty Certificates as issued by the appropriate national boards."^^ . + "vto" . + . + "http://www.unimod.org/modifications_view.php?editid1=$1"^^ . + . +_:N778e445c07cd4361abbd089c44880ce0 "helpdesk@cropontology-curationtool.org" . + "v2_1b0f158a-86e2-3887-b990-89e3cf2d9082"^^ . + "false"^^ . + . + "Assists in resolving data across cloud resources."^^ . + . + "obo" . + . + . + . + . + . + . + . + "^[0-9]{4}$"^^ . + . + "Cell line collections (Providers)"^^ . + . + "^\\d+$"^^ . + . + "ontology" . + "5621"^^ . + . + "^\\d+$"^^ . + "social science" . + . + . + . + "The GeoNames geographical database covers all countries and contains over eleven million placenames that are available for download free of charge."^^ . + . + . + . + . + . + "Molecular Process Ontology" . + . + "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1"^^ . + . + "A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data."^^ . + "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"^^ . + . + . + "NCIt" . + . + . + . + "vendor" . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Locus' view."^^ . + "VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis."^^ . + "ontologies" . + . + . + "false"^^ . + . + . + "ArrayExpress" . + . + "http://purl.dataone.org/odo/ECSO_$1"^^ . + "johnbeverley2021@u.northwestern.edu" . + . + . + . + . + "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download."^^ . + "zebrafish" . + "relationships" . + . + "E5.11.2.0.0.0.4"^^ . + . + . + . + "darc" . + . + "sequence" . + . + "agriculture" . + . + "Linkml is a flexible modeling language that allows you to author schemas in yaml that describe the structure of your data. additionally, it is a framework for working with and validating data in a variety of formats (json, rdf, tsv), with generators for compiling linkml schemas to other frameworks."^^ . + . + . + "ReviewVersion"^^ . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + "Gwen Frishkoff" . + . + . + . + . + . + "http://www.ncbi.nlm.nih.gov/clinvar?term=$1"^^ . + "Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . + . + . + . + . + "identifier for a tree species of the United States and Canada on the Leafsnap electronic field guide"^^ . + . + . + . + "true"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + . + "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter."^^ . + "^\\d+$"^^ . + . + "https://mediadive.dsmz.de/solutions/"^^ . + "false"^^ . + "NIST Chemistry WebBook" . + "http://www.signaling-gateway.org/molecule/query?afcsid="^^ . + . + . + "chemistry" . + "^RID\\d+$"^^ . + . + . + . + . + "obo" . + "life science" . + "mp" . + . + . + "The Genetic Testing Registry (GTR®) provides a central location for voluntary submission of genetic test information by providers. The scope includes the test's purpose, methodology, validity, evidence of the test's usefulness, and laboratory contacts and credentials. The overarching goal of the GTR is to advance the public health and research into the genetic basis of health and disease"^^ . + "cteno" . + . + . + "Peter Midford" . + "true"^^ . + "AntWeb is a website documenting the known species of ants, with records for each species linked to their geographical distribution, life history, and includes pictures."^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "false"^^ . + "ClassyFire" . + "false"^^ . + . + . + . + . + . + . + "euGenes provides a common summary of gene and genomic information from eukaryotic organism databases including gene symbol and full name, chromosome, genetic and molecular map information, Gene Ontology (Function/Location/Process) and gene homology, product information."^^ . + . + "structure" . . - . - . - . - "https://bioregistry.io/bacmap.map:"^^ . - . - "nickf@ebi.ac.uk" . - "false"^^ . - . - . - "true"^^ . - . - . - . - . - . - "Image Data Resource" . - "pdbj" . - . - . - . - . - . - . - "^\\d+$"^^ . - "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page)."^^ . - . - . - . - . - . - . - "C2584994"^^ . - "false"^^ . - "ontology" . - . - . - . - . - "Imanis Life Sciences cell line products" . - . - "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"^^ . - "ontology" . - . - "https://bitbucket.org/"^^ . - . - "^\\d{7}$"^^ . - . - "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=$1"^^ . - . - "imaging" . - "Database of Quantitative Cellular Signaling: Pathway" . - . - . - . - . - "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . - . - . - . - . - . - . - "Study inside StoreDB"^^ . - . - . - . - "hpa" . - . - . - . - . - . - . - . - "63250"^^ . - . - . - . - . - "biology" . - . - . - . - . - "false"^^ . - "false"^^ . - "dna" . - . - "alejandra.gonzalez.beltran@gmail.com" . - . - . - "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."^^ . - . - . - "ontology" . - "ontology" . - "https://www.phenxtoolkit.org/protocols/view/$1"^^ . - "semapv" . - . - . - . - "obo" . - . - "hmdb" . - "genomics" . - "^([A-Za-z]+)?(\\_)?([A-Za-z-]+)\\:([A-Za-z0-9 ]+)$"^^ . - . - . - "http://purl.org/net/orth#$1"^^ . - . - . - . - "biomedical" . - . - . - . - . - "Stacia R Engel" . - . - "PSI-MI" . - "4892"^^ . - "true"^^ . - . - . - . + . + "^\\d{7}$"^^ . + "false"^^ . + "CAMEO Chemicals ID" . + . + "http://purl.obolibrary.org/obo/VTO_$1"^^ . + . + . + . + . + . + "^\\d{6}$"^^ . + . + . + . + "Heidi L. Rehm" . + . + . + . + . + . + "yetfasco" . + . + "NPC139585"^^ . + . + "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=$1"^^ . + . + "^\\d{1,5}$"^^ . + "http://www.w3.org/2000/01/rdf-schema#$1"^^ . + . + . + . + "ML0224"^^ . + "Systems Biology Ontology" . + "The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology."^^ . + . + . + "^PRI\\d*$"^^ . + . + . + "false"^^ . + . + . + . + "Quality"^^ . + . + . + "ontology" . + . + . + . + . + . + . + . + "http://edamontology.org/format_$1"^^ . + "21692"^^ . + . + . + . + "The UCSC Genome Browser is an on-line, and downloadable, genome browser hosted by the University of California, Santa Cruz (UCSC).[2][3][4] It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations."^^ . + "obo" . + "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1="^^ . + "https://covid19.sfb.uit.no/api/records/$1"^^ . + . + . + . + . + "false"^^ . + . + "http://www.ontobee.org/ontology/$1?iri=http://purl.obolibrary.org/obo/$1_$2" . + "false"^^ . + . + "http://purl.obolibrary.org/obo/PCL_"^^ . + . + . + . + "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id="^^ . + . + . + . + "https://bioregistry.io/resolve/github/pull/"^^ . + . + "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains."^^ . + . + "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_$1"^^ . + . + . + "true"^^ . + "pancreatic islet development" . + "^[OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}$"^^ . + . + . + . + "BRENDA Tissue Ontology" . + . + . + . + . + "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80"^^ . + "false"^^ . + . + "obo" . + . + . + "false"^^ . + . + "https://www.gwascentral.org/phenotype/$1"^^ . + . + . + . + "ontology" . + . + . + . + "LGCEDe-S-000002244"^^ . + "Simple Knowledge Organization System eXtension for Labels" . + . + . + . + . + . + . + . + "rhea" . + . + "Coconut ontology" . + . + . + . + "mfomd" . + . + "https://publons.com/publon/$1"^^ . + . + . + . + . + . + . + . + . + "Call for paper topics in EasyChair"^^ . + "Nathan Edwards" . + "Cell Cycle Ontology" . + . + . + "0010316"^^ . + "^\\d{7}$"^^ . + . + "0000010"^^ . + . + . + . + . + . + . + "dc" . + . + . + . + "false"^^ . + "The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data."^^ . + . + "https://phytochem.nal.usda.gov/phytochem/chemicals/show/$1"^^ . + "http://www.molmovdb.org/cgi-bin/morph.cgi?ID=$1"^^ . + "HOSO is an ontology of informational entities and processes related to healthcare organizations and services."^^ . + "http://influenza.psych.ac.cn/search/detail.jsp?segment.gb_id="^^ . + . + . + . + "0000435"^^ . + "true"^^ . + "drugbank.category" . + "gold standard" . + . + . + . + . + . + "ecyano.entity" . + "13"^^ . + . + "ro" . + . + "The LifeWatch ERIC repository of semantic resources for the ecological domain." . + . + . + . + . + "biomodels.kisao" . + . + "^\\d{7}$"^^ . + "dg.4503" . + . + "false"^^ . + "false"^^ . + "http://www.whocc.no/atcvet/atcvet_index/?code="^^ . + "NCI Thesaurus" . + . + . + . + . + . + . + "HMS-LINCS" . + . + . + "David Clunie" . + . + "minid.test" . + "http://cerevisiae.oridb.org/details.php?id="^^ . + . + "^\\d{7}$"^^ . + . + "https://www.ncbi.nlm.nih.gov/dbvar/studies/$1"^^ . + . + "The upper level ontology upon which OBO Foundry ontologies are built."^^ . + . + "https://www.alliancegenome.org/accession/$1"^^ . + "deepak.unni3@gmail.com" . + . + "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary" . + "http://www.onto-med.de/ontologies/gfo.owl#"^^ . + "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/$1"^^ . + "shacl" . + . + "helpdesk@cropontology-curationtool.org" . + "false"^^ . + . + . + . + . + "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references experiments and assays."^^ . + "^(R)?PXD\\d{6}$"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + "Coleoptera Anatomy Ontology" . + "https://www.proteomicsdb.org/#human/proteinDetails/"^^ . + . + . + . + . + "bigg.reaction" . + . + . + "Environmental Molecular Sciences Laboratory Project" . + "http://purl.obolibrary.org/obo/GSSO_$1"^^ . + "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid=$1"^^ . + "SCTID_2010_1_31" . + . + . + . + . + "https://biomedit.ch/rdf/sphn-ontology/sphn#$1"^^ . + "Paula Duek Roggli" . + . + . + . + "life science" . + . + . + . + . + . + . + "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=$1"^^ . + . + . + "false"^^ . + . + "iuphar.receptor" . + "https://web.expasy.org/cellosaurus/" . + "project management" . + . + . + . + . + "false"^^ . + "0001114"^^ . + . + "hamap" . + "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$"^^ . + . + "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=$1"^^ . + . + . + . + . + . + . + "dietary restriction" . + . + "medicine" . + . + . + "Animal natural history and life history" . + . + . + . + "^ChiCTR\\d+$"^^ . + . + . + "radiomics" . + . + "drug repositioning" . + "http://www.proglycprot.org/detail.aspx?ProId="^^ . + . + . + . + "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement."^^ . + . + "snoRNABase" . + "neuroscience" . + "A controlled vocabulary to support the study of transcription in the mouse brain"^^ . + "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$"^^ . + . + . + "Daniel Schober" . + . + . + . + . + . + "ATOL (Animal Trait Ontology for Livestock) is an ontology of characteristics defining phenotypes of livestock in their environment (EOL). ATOL aims to: - provide a reference ontology of phenotypic traits of farm animals for the international scientificand educational - communities, farmers, etc.; - deliver this reference ontology in a language which can be used by computers in order to support database management, semantic analysis and modeling; - represent traits as generic as possible for livestock vertebrates; - make the ATOL ontology as operational as possible and closely related to measurement techniques; - structure the ontology in relation to animal production."^^ . + . + . + . + . + "^\\d+$"^^ . + "InterPro" . + . + . + . + . + "DrugBank" . + . + . + . + "ontology" . + . + . + . + . + . + "astrophysics and astronomy" . + . + . + . + "false"^^ . + . + . + "rdfs" . + . + "33607"^^ . + . + . + "http://purl.obolibrary.org/obo/GNO_$1"^^ . + . + . + "knowledge and information systems" . + "http://purl.obolibrary.org/obo/PAO_"^^ . + . + "re3data" . + "IntAct protein interaction database" . + "false"^^ . + "40565"^^ . + "The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces."^^ . + "raymond@caltech.edu" . + . + . + . + . + "cryopreserved" . + . + "false"^^ . + . + . + . + . + . + "Network of Different Plant Genomic Research Projects" . + . + . + . + "^[a-zA-Z_][a-zA-Z0-9\\-_]+$"^^ . + "bioregistry"^^ . + "chemical" . + . + "^\\d+$"^^ . + . + "drks" . + "protein" . + . + . + . + "HBG004341"^^ . + . + . + "http://uri.neuinfo.org/nif/nifstd/sao"^^ . + "^\\d+$"^^ . + "ontology" . + "life science" . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . +_:N6d5b847b9ebd4556a5a9c1fcc34574ae "World Health Organization" . + . + . + . + "protein" . + "tanja.bekhuis@tcbinfosci.com" . + "SysBioCancer2022"^^ . + "dragondb.allele" . + . + . + "Philipp.Bucher@sib.swiss" . + . + . + . + . + "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1="^^ . + "haiiu@dtu.dk" . + "false"^^ . + . + "ASAP (a systematic annotation package for community analysis of genomes) stores bacterial genome sequence and functional characterization data. It includes multiple genome sequences at various stages of analysis, corresponding experimental data and access to collections of related genome resources."^^ . + "http://purl.obolibrary.org/obo/MFOMD_"^^ . + "http://purl.bioontology.org/ontology/npo#NPO_"^^ . + . + "authoredBy"^^ . + "https://www.ebi.ac.uk/merops/cgi-bin/pepsum?id="^^ . + . + . + "institution" . + . + "biodiversity" . + . + "http://getentry.ddbj.nig.ac.jp/getentry/dad/"^^ . + "3"^^ . + . + . + . + . + . + . + . + . + "dna" . + . + "Datanator Metabolite" . + . + . + "false"^^ . + . + . + . + "This ontology was built as part of the AKER project. It describes variables used in beet phenotyping (experimental properties and measurement scale) for each institution (INRAE, Geves, ITB) and breeding companies (Florimond Desprez). Curator: Dorothee Charruaud (ADRINORD - URGI) Daphne Verdelet (Florimond Desprez) - First submission in November 2017."^^ . + . + "vsmo" . + . + . + . + . + . + "rat" . + "http://purl.org/net/orth#"^^ . + . + . + . + "WikiPathways Ontology" . + . + "life science" . + "false"^^ . + "^\\w+(\\.)?\\d+$"^^ . + . + "classification" . + . + "ZFA_RETIRED" . + . + "A database-specific registry supporting curation in the Gene Ontology"^^ . + . + . + "life science" . + . + . + . + "Citation Counting and Context Characterisation Ontology" . + . + . + "ehda" . + "Foundational Model of Anatomy" . + . + . + . + "protein" . + . + . + . + "^(cd)?\\d{5}$"^^ . + "https://chemkg.github.io/chemrof/"^^ . + "Nanbyo Disease Ontology" . + . + . + . + . + "BiGG Model" . + . + . + "bioactivities" . + "false"^^ . + "8639.1"^^ . + . + . + . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references mouse."^^ . + . + "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:$1"^^ . + "Gramene Reference" . + "http://www.kegg.jp/entry/$1"^^ . + "^PWY\\w{2}\\-\\d{3}$"^^ . + "BioCarta Pathway" . + . + "^\\d{7}$"^^ . + . + "^\\d+$"^^ . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "research" . + . + . + "epigenetics" . + . + . + "life science" . + . + "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. "^^ . + . + . . - . - . - . - . - "http://purl.obolibrary.org/obo/REX_"^^ . - . - . - . - . - "false"^^ . - "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS."^^ . - . - . - . - . - "dna" . - . - . - . - . - . - "img.gene" . - "anatomy" . - . - "http://hpc-bioinformatics.cineca.it/fusion/cell_line/$1"^^ . - "GR_GENE" . - . - "false"^^ . - "^\\d{7}$"^^ . - "^NPC\\d+$"^^ . - . - "model organism" . - . - "Pigeonpea ontology" . - "false"^^ . - . - . - "vmc" . - . - "WormBase RNAi" . - . - "collagenmutdb" . - "mimodb" . - . - "ontology" . - "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors."^^ . - "lbo" . - "modularmassactionprimer"^^ . - . - . - "^\\d{7}$"^^ . - . - "90801"^^ . - . - . - "https://cropontology.org/rdf/CO_339:"^^ . - "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively."^^ . - . - "version 2019 - pvs"^^ . - . - . - "Torsten Schwede" . - "helpdesk@cropontology-curationtool.org" . - "Bgee stage" . - . - . - "y3ax-8bq3-60"^^ . - . - "subject agnostic" . - . - . - "personalized medicine" . - . - "bibliography" . - . - "genomics" . - . - . - . - . - . - . - . - . - "false"^^ . - "G-Rich Sequences Database" . - "ontology" . - . - "ACTRN" . - "Jeffrey Wong" . - . - "Japan Registry of Clinical Trials" . - "Linear double stranded DNA sequences" . - . - . - "The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or development of vertebrate organisms."^^ . - . - . - . - "Animal Genome Pig QTL" . - . - . - . - "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments."^^ . - . - . - "gene" . - . - "eNanoMapper ontology" . - . - . - . - . - "life science" . - "life science" . - . - . - . - . - . - . - "false"^^ . - "PKDB00198"^^ . - . - . - . - "^rx[0-9]{5}$"^^ . - . - . - . - . - "https://bioregistry.io/iceberg.cime:"^^ . - . - . - . - . - . - . - . - "metadata" . - "0000001"^^ . - "Regulation of Transcription Ontology" . - "FBbt" . - . - "Anatomical Therapeutic Chemical Classification System" . - . - . - "Andreas Ledl" . - . - . - . - . - "hoso" . - "24867"^^ . - . - . - "LipidBank" . - . - "^\\d+$"^^ . - . - . - "https://bioregistry.io/metaregistry/scholia/"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . - "environmental science" . - "http://www.cellsignal.com/products/$1.html"^^ . - "Marilyn Safran" . - "true"^^ . - "Person"^^ . - . - "knockout" . - "Prefix.cc" . - . - . - . - . - "https://www.ebi.ac.uk/metagenomics/samples/$1"^^ . - . - . - . -_:N7cae4825d6284d579d128ee48b230336 "Josef Hardi" . - "CABRI (Common Access to Biotechnological Resources and Information) is an online service where users can search a number of European Biological Resource Centre catalogues. It lists the availability of a particular organism or genetic resource and defines the set of technical specifications and procedures which should be used to handle it."^^ . - "otl" . - . - . - "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . - . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/"^^ . - . - . - "Gene Ontology Registry" . - . - "metabolites" . - . - . - "A pull request in any public repository on GitHub."^^ . -_:N441b18bc09374ab9a3f9a92447d2330a "michael.lincoln@va.gov" . - . - "SitEx is a database containing information on eukaryotic protein functional sites. It stores the amino acid sequence positions in the functional site, in relation to the exon structure of encoding gene This can be used to detect the exons involved in shuffling in protein evolution, or to design protein-engineering experiments."^^ . - . - "bioregistry.schema" . - "^\\d+$"^^ . - . - "An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy."^^ . - . - "false"^^ . - . - . - . - . - "true"^^ . - "Rat Genome Database strain" . - . - "http://pepbank.mgh.harvard.edu/interactions/details/$1"^^ . - . -_:N7cae4825d6284d579d128ee48b230336 "johardi@stanford.edu" . - . - "health science" . - . - . - . - . - . - "protein complexes" . - . - . - "false"^^ . - . - "nucleotide" . - "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to allele information."^^ . - . - . - "medicine" . - . - . - "classification" . - . - . - "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species."^^ . - "Life cycle stages for Medaka"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "SPIKE Map" . - . - . - "cell" . - . - . - . - "Dr Paul Schofield" . - . - "^MTBLS\\d+$"^^ . - . - . - "data management" . - . - . - . - . - . - "http://purl.obolibrary.org/obo/DRON_$1"^^ . - "https://gudmap.org/id/$1"^^ . - "false"^^ . - . - . - "49"^^ . - "organism supplier" . - "cultured cell line" . - "^\\d{7}$"^^ . - "CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE."^^ . - . - "genome" . - "Ruili Huang" . - . - . - "http://purl.obolibrary.org/obo/GECKO_"^^ . - . - "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."^^ . - . - . - "owl" . - . - "experiment" . - . - . - . - "structural biology" . - . + . + . + . + . + . + "Computational and Informatics Resources for Glycoscience" . + "false"^^ . + . + . + . + . + . + . + . + "false"^^ . + "neuroscience" . + "false"^^ . + "265"^^ . + . + "ICARDA - TDv5 - Sept 2018"^^ . + . + "http://purl.obolibrary.org/obo/LIPRO_"^^ . + "false"^^ . + "NIF Standard Ontology: Cell Types" . + . + . + . + . + . + . + "false"^^ . + . + . + "schem" . + . + . + . + "The data cube vocabulary" . + "ESi007-A"^^ . + . + . + "dr.sebastian.koehler@gmail.com" . + . + . + . + "false"^^ . + "RepeatsDB is a database of annotated tandem repeat protein structures. This collection references protein entries in the database."^^ . + . + . + . + . + . + . + "false"^^ . + "https://www.disprot.org/idpo/IDPO:"^^ . + . + . + . + "RGD" . + "NeXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integration of and navigation through protein-related data. \n(Developed by the SIB Swiss Institute of Bioinformatics)"^^ . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ENVO_"^^ . + . + "DOMMINO is a database of macromolecular interactions that includes the interactions between protein domains, interdomain linkers, N- and C-terminal regions and protein peptides."^^ . + "TarBase" . + "gtr" . + . + "dna" . + . + . + . + . + "ybradford@zfin.org" . + . + "confident.event" . + . +_:Nf607a80abc1c4f09ab04e73093c67475 "Crop Ontology Helpdesk" . + . + "MCDS_L_0000000001"^^ . + "ontology" . + . + . + . + . + . + "214100"^^ . + . + . + "itmctr" . + . + . +_:Nfc0f489e36ce453cac43f91508c63245 "julie@igbmc.u-strasbg.fr" . + . + "^\\d{7}$"^^ . + . + . + . + "http://purl.obolibrary.org/obo/MONDO_"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "obo" . + . + . + . + . + "Fernanda Dorea" . + . + "pencehe@oneonta.edu" . + . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/AEO_"^^ . + "^rs\\d+$"^^ . + "https://www.worldcat.org/oclc/$1"^^ . + "Semanticscience Integrated Ontology" . + "0000190"^^ . + . + "^LOC\\_Os\\d{1,2}g\\d{5}$"^^ . + "Citation Typing Ontology" . + . + . + . + . + . + "MEROPS Clan" . + "cl3603"^^ . + "Michelle Giglio" . + . + . + . + . + . + . "microsporidia" . - . - . - "4b848c342a4f4abc871bdf8a09a60807"^^ . - . - "The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team."^^ . - . + "http://www.mmmp.org/MMMP/public/biomap/viewBiomap.mmmp?id="^^ . + . + . + . + "sasbdb" . + "https://cropontology.org/rdf/CO_326:"^^ . + "protein" . + "ontology" . + . + . + "gene" . + "http://purl.obolibrary.org/obo/OGMS_$1"^^ . + . + . + . + . + "false"^^ . + . + "00007294"^^ . + . + . + . + . + . + . + "Akhilesh Pandey" . + . + "obv" . + . + "cdna" . + . + "Pathogen Host Interaction Phenotype Ontology" . + "false"^^ . + . + "false"^^ . + . + . + . + "ontology" . + "An ontology describing the anatomical structures and characteristics of Porifera (sponges)"^^ . + . + . + . + . + . + . + "eukaryotic" . + "bcgo" . + . + . + "^\\d+$"^^ . + _:N94ef09fe5186469496b5929a73d32bf9 . + . + . + . + "gwascentral.marker" . + . + "^\\d+$"^^ . + "https://www.brenda-enzymes.de/ligand.php?brenda_group_id="^^ . + . + . + . + . + "bcbc" . + . + "ontology" . + . + "neuroscience" . + "false"^^ . + . + "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance."^^ . + "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$"^^ . + . + . + . + . + "false"^^ . + "A vocabulary of taxonomic ranks (species, family, phylum, etc)"^^ . + . + . + "A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provide transparency in contributions to scholarly published work, to enable improved systems of attribution, credit, and accountability."^^ . + "ohpi" . + . + . + "uniprot.chain" . + . + "false"^^ . + . + . + . + . + "false"^^ . + "https://datalab.rwth-aachen.de/MINDER/resource/"^^ . + "^\\d{1,7}\\-\\d{2}\\-\\d$"^^ . + . + . + "1017"^^ . + . + "deepak.unni3@lbl.gov" . + . + "^[m,M]{2}[0-9]{5}[0-9]*$"^^ . + "biodiversity" . + "mmsinc" . + "https://www.ncbi.nlm.nih.gov/research/cog/cog/$1"^^ . + "Clinical Trials Ontology" . + . + . + . + "The Intelligence Task Ontology (ITO) provides a comprehensive map of machine intelligence tasks, as well as broader human intelligence or hybrid human/machine intelligence tasks."^^ . + "^c\\d+$"^^ . + . + "meteorology" . + . + "registry" . + . + "ecology" . + . + . + "1242"^^ . + . + . + "drosophila" . + . + . + . + . + . + "true"^^ . + . + . + . + . + . + . + . + "BCRC Strain Collection Catalog" . + "^\\d+$"^^ . + . + . + . + . + . + "false"^^ . + . + "dso" . + . + . + "The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts."^^ . + . + . + . + "slime-mould" . + "agb@ebi.ac.uk" . + "Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay."^^ . + . + . + . + "BioSimulators" . + "biogrid" . + . + "life science" . + "International Genome Sample Resource" . + "genomic sequence" . + . + "cdd" . + "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein="^^ . + "The [Global Biodata Coalition](https://globalbiodata.org) released a [curated list](https://globalbiodata.org/scientific-activities/global-core-biodata-resources/) of 37 life sciences databases in December 2022 that they consider as having significant importance (see criteria [here](https://doi.org/10.5281/zenodo.5845116)). While it's not a primary goal of the Bioregistry to cover life science databases (other resources like Wikidata and [FAIRsharing](https://fairsharing.org) already do an excellent job of this), many notable databases induce one or more semantic spaces that are relevant for curation and prefix assignment in the Bioregistry. Therefore, a large number of the resources in this list correspond 1-to-1 with prefixes in the Bioregistry, a small number (e.g., Orphanet, CIViC, PharmGKB) correspond to multiple prefixes, some have a complicated relationship with many-to-1 relationships to prefixes (DNA Data Bank of Japan, European Nucleotide Archive), and some constitute databases that simply reuse other key vocabularies (e.g., STRING reuses UniProt, GWAS Catalog reuses dbSNP and EFO). Among the databases that don't induce semantic spaces or have simple relationships to prefixes are:\n\n- [Clinical Genome Resource](https://www.clinicalgenome.org/) (uses HGNC, MONDO, PharmGKB, etc.)\n- [DNA Data Bank of Japan](https://www.ddbj.nig.ac.jp/) (uses INSDC)\n- [GENCODE](https://www.gencodegenes.org/) (uses GenBank)\n- [GWAS Catalog](https://www.ebi.ac.uk/gwas/) (uses dbSNP, EFO, etc)\n- [STRING](https://string-db.org/) (uses UniProt)" . + . + . + "biomedical science" . + . + . + "SNOMEDCT_2010_1_31" . + . + . + "^[0-9]+$"^^ . + . + . + . + . + . + . + . + . + . + . + "The bacterial tyrosine kinase database (BYKdb) that collects sequences of putative and authentic bacterial tyrosine kinases, providing structural and functional information."^^ . + "Glycan Naming and Subsumption Ontology" . + . + "^[A-Za-z-0-9]+$"^^ . + "0000066"^^ . + . + . + "^(LCL|LDC|ES|LSC|LPC)-\\d+$"^^ . + "true"^^ . + "phylogenomics" . + . + . + . + "Neural ElectroMagnetic Ontology (NEMO) describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive/behavioral) attributes, and data-level attributes (acquisition and analysis parameters). FAIRsharing curators have been unable to contact the project developers, and as such this record has been marked as Uncertain. Please contact us if you have any information on this resource."^^ . + "CHEBI" . + . + . + . + . + . + . + . + "SIGNOR Relation" . + "http://www.w3.org/XML/1998/namespace#$1"^^ . + "eukaryotic" . + . + . +_:Nd76b03d6e7bf479999c04bf3d1889fcd "slarson@ncmir.ucsd.edu" . + . + . + "runBioSimulations" . + "A vendor of antibodies and other biologics"^^ . + . + . + "http://ecmdb.ca/compounds/"^^ . + _:N8e53bbafb12b465bbef6aa16cd609597 . + . + "An ontology meant to define bibliographic records, bibliographic references, and their compilation into bibliographic collections and bibliographic lists, respectively."^^ . + . + . + "Jade Hotchkiss" . + "PhosphoSite Protein" . + . + "protein" . + "00000098"^^ . + "entrez" . + "foodex2" . + . + . + "Evidence ontology" . + . + . + . + . + . + . + . + . + . + . + "The Python Package Index (PyPI) is a repository for Python packages."^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + "SECONDARY_CAS_RN" . + . + . + . + . + . + "cosmic.cell" . + "gnd" . + . + . + "10531"^^ . + . + "obo" . + "^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\\d{5}$"^^ . + "^SM\\d{5}$"^^ . + . + . + "health science" . + . + "https://www.ebi.ac.uk/metabolights/$1"^^ . + . + "^\\d{7}$"^^ . + . + . + "https://www.abmgood.com/search?query="^^ . + . +_:Nb6174b7d1201433680b115700d184ee9 "futo@stanford.edu" . + "eaglei" . + . + . + "https://jjj.bio.vu.nl/models/"^^ . + . + "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop="^^ . + . + "false"^^ . + . + . + . + "ndfrt" . + . + "MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations."^^ . + . + . + . + "genetic construct" . + "biolink" . +_:N4dc05b1caeac4b4d91be4661e7a222e7 "helpdesk@cropontology-curationtool.org" . + . + . + "Gazetteer" . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "AB" . + "LNCipedia" . + "23159291"^^ . + "European Registry of Materials" . + . + . + "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . + . + . + . + . + "Represents chemical kinetic reaction mechanisms."^^ . + "I31.952"^^ . + . + "ontology" . + "^\\d{6}$"^^ . + . + . + "https://bioregistry.io/metaregistry/biocontext/$1" . + . + . + . + "gold" . + . + . + . + . + "http://sideeffects.embl.de/drugs/$1"^^ . + "flowrepository" . + . + . + "http://purl.obolibrary.org/obo/GAZ_"^^ . + . + "diapriid@gmail.com" . + . + "^P(X|R)D\\d{6}$"^^ . + "Xenbase" . + . + "Morpheus model repository" . + . + . + "false"^^ . + . + . + . + . + "4776"^^ . + "false"^^ . + "prodom" . + "Woody Plant Ontology ontology" . + "true"^^ . + . + . "functional genomics" . - "BioSample" . - "https://s3.us-east-2.amazonaws.com/lg.cede/$1"^^ . - . - "00573"^^ . - . - . - . - . - "6200"^^ . - "Crop Ontology Curation Tool" . - . - "M94112"^^ . - . - . - . - "http://www.pantree.org/node/annotationNode.jsp?id=$1"^^ . - . - . - . - . - . - "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications."^^ . - "http://www.bioguo.org/AnimalTFDB/family.php?fam="^^ . - "mesh" . - . - "https://www.ndexbio.org/viewer/networks/$1"^^ . - "frederique.lisacek@isb-sib.ch" . - . - "Preprints are articles which have not been peer-reviewed from various preprint servers and open research platforms such as bioRxiv, ChemRxiv, PeerJ Preprints and F1000."^^ . - . - "TTDS00056"^^ . - . - "^TTDS\\d+$"^^ . - . - "chemistry" . - . - _:N5067726a33d144dc8361a944c2151384 . - "http://www.arachnoserver.org/toxincard.html?id=$1"^^ . - . - "ontology" . - . - "ontology" . - . - "Mental Disease Ontology" . - . - . - . - . - "3905431"^^ . - . - "http://biocyc.org/getid?id="^^ . - "http://www.humanproteomemap.org/protein.php?hpm_id="^^ . - "^\\w+$"^^ . - "The Database of Quantitative Cellular Signaling is a repository of models of signaling pathways. It includes reaction schemes, concentrations, rate constants, as well as annotations on the models. The database provides a range of search, navigation, and comparison functions. This datatype provides access to specific models."^^ . - . - "clinvar" . - "A manually curated resource for the representation and annotation of metabolic pathways"^^ . - . - . - . - "false"^^ . - "biomedical science" . - . - . - . - "regulation" . - "mw.study" . - . - . - "https://w3id.org/oc/oci/$1"^^ . - "^\\d+$"^^ . - . - . - . - . - . - . - . - "https://bionumbers.hms.harvard.edu/bionumber.aspx?id=$1"^^ . - . - "life science" . - "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1"^^ . - "FooDB compound" . - . - . - "earth science" . - . - "http://purl.obolibrary.org/obo/VariO_$1"^^ . - . - . - . + "MetaNetX compartment" . + . + . + . + . + "^\\d+$"^^ . + . + "^\\d{7}$"^^ . + . + . + . + "Legacy disease classes that later became MONDO"^^ . + . + . + . + "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + . + "th" . + . + . + . + "https://www.ebi.ac.uk/miriam/main/resources/"^^ . + . + . + . + . + . + . + . + . + "pdro" . + . + . + . + . + . + "^\\d{1,9}$"^^ . + . + "true"^^ . + "PharmGKB Gene" . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + "https://biosimulators.org/simulators/"^^ . + "false"^^ . + "12345"^^ . + "https://www.cropontology.org" . + . + "false"^^ . + "201022999"^^ . + "prgr_human"^^ . + . + "medgen.gtr" . + "vsao" . + . + . + "hoganwr@gmail.com" . + . + . + . + "^\\w+$"^^ . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier."^^ . + "Cell line collections (Providers)"^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_341:$1"^^ . + "0001"^^ . + . + . + "The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks."^^ . + "http://www.pathwaycommons.org/pc/record2.do?id="^^ . + "00000099"^^ . + "^\\d+$"^^ . + "0001807"^^ . + . + "Stian Soiland-Reyes" . + . + . + "imotdb" . + . + . + . + "false"^^ . + . + "Guide to Pharmacology Target" . + . + "Lin Huang" . + . + "Owl-time is an owl-2 dl ontology of temporal concepts, for describing the temporal properties of resources in the world or described in web pages. the ontology provides a vocabulary for expressing facts about topological (ordering) relations among instants and intervals, together with information about durations, and about temporal position including date-time information. time positions and durations may be expressed using either the conventional (gregorian) calendar and clock, or using another temporal reference system such as unix-time, geologic time, or different calendars."^^ . + "genomics" . + "faseb list" . + . + "https://grants.nih.gov/stem_cells/registry/current.htm?ID="^^ . + . + . + . + . + "small molecule" . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS."^^ . + . + . + . + . + "false"^^ . + "biology" . + . + . + . + . + "90000018"^^ . + "FamPlex" . + . + "biomedical science" . + . + "Experiment details about PeptideAtlas entries. Each PASS entry provides direct access to the data files submitted to PeptideAtlas."^^ . + . + . + . + "computer science" . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "Nomenclature Consortium around Chicken genes (analogous to the HGNC for humans)"^^ . + . + . + "https://www.ncbi.nlm.nih.gov/research/cog/pathway/$1"^^ . + . + . + . + "epidemiology" . . - "https://biomodels.net/vocab/idot.rdf#$1"^^ . - . - "life science" . - "brenda" . - . - "drugbank.condition" . - "http://purl.obolibrary.org/obo/GEO_$1"^^ . - "genomics" . - . - "pathway" . - . - . - "false"^^ . - . - . - . - "KEGG.DRUG" . - . - . - . - . - "http://bigg.ucsd.edu/models/universal/reactions/$1"^^ . - "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . - . - . - . - "obo" . - . - "ENVO" . - "clinical studies" . - . - "^\\d{7}$"^^ . - . - . - "wmueller@gbf.de" . - . - . - "^[a-z0-9\\-]+$"^^ . - . - . - . - . - . - . - "MMP02954345.1"^^ . - "ricenetdb.compound" . - . - . - "life science" . - "BAO" . - . - . - "http://purl.obolibrary.org/obo/MAXO_$1"^^ . - "The IUPAC International Chemical Identifier (InChI) is a non-proprietary identifier for chemical substances that can be used in printed and electronic data sources. It is derived solely from a structural representation of that substance, such that a single compound always yields the same identifier."^^ . - "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1"^^ . - "Amanda Hicks" . - . - "life science" . - . - . - "Role Ontology" . - "proteomics" . - . - "Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin data with comprehensive toxin target information."^^ . - _:N41714787cd9047729c702a0d53c298fe . - "arrayexpress.platform" . - . + "NLXSUB" . + "http://www.gramene.org/db/genes/search_gene?acc=$1"^^ . + "thermofisher" . + . + "This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 12 rice chromosomes. These data are available through search pages and the Genome Browser that provides an integrated display of annotation data."^^ . + . + . + . + . + . + . + . + . + "CSP2005" . + . + . + . + . + "^\\w+$"^^ . + . + . + . + "Scopus affiliation ID" . + "http://purl.obolibrary.org/obo/LIPRO_$1"^^ . + "dna" . + . + "batchelorc@rsc.org" . + "MultiCellDS Digital snapshot" . + . + "^[1-9]\\d{0,5}$"^^ . + "http://www.pharmgkb.org/drug/$1"^^ . + "5"^^ . + . + . + . + "https://www.disprot.org/idpo/IDPO:$1"^^ . + "proteomics" . + . + . + . + _:N8085bf80823543a98709bfd02a116783 . + . + . + "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=$1"^^ . + . + . + . + "false"^^ . + "^\\d+$"^^ . + . + . + . + "botany" . + "447860"^^ . + . + . + "Allotrope Merged Ontology Suite" . + "APID Interactomes" . + . + . + . + "^[a-z0-9-]+$"^^ . + "^PA\\d+$"^^ . + . + . + "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$"^^ . + . + . + "^NPC\\d+$"^^ . + "https://www.re3data.org" . + "protein" . + . + . + "ontology" . + . + . + "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id="^^ . + . + . + . + . + "https://tetrahymena.vet.cornell.edu/display.php?stockid="^^ . + "rna" . + . + "medical informatics" . + . + "biology" . + . + "classification" . + . + . + . + . + . + "jwest@rcsb.rutgers.edu" . + . + "biomedical science" . + . + . + . + "^\\w+$"^^ . + "FDA Submission Tracking Number" . + . + . + "http://purl.bioontology.org/ontology/HCPCS/$1"^^ . + "false"^^ . + . + "http://purl.obolibrary.org/obo/RO_$1"^^ . + "true"^^ . + "taxrank" . + "https://jrct.niph.go.jp/en-latest-detail/$1"^^ . + . + . + "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default"^^ . + . + . + "Banco de Celulas do Rio de Janeiro" . + . + "VegBank" . + "structure" . + . + . + . + "metabolite" . + . + "International Nonproprietary Names" . + "bsu:BSU01340"^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + "biomedical science" . + "Phenoscape Publication" . + . + "http://vbrc.org/gene_detail.asp?gene_id="^^ . + "S7000002168151102"^^ . + . + "918902"^^ . + "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets"^^ . + "^\\w+$"^^ . + "human" . + "0003003"^^ . + . + . + . + . + . + . + "biomedical science" . + . + . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/CMO_"^^ . + . + . + . + . + "https://data.terra.bio/ga4gh/drs/v1/objects/$1"^^ . + . + . + . +_:N609943db95f64f818021f2747975301e "INOH curators" . + "developmental biology" . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "mmmp.biomaps" . + "assays" . + . + . + "The Livestock Product Trait Ontology (LPT) is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to products produced by or obtained from the body of an agricultural animal or bird maintained for use and profit."^^ . + . + . + "mycobank" . + . + . + . + "iceo" . + . + "animal physiology" . + . + "Addgene Plasmid Repository" . + . + . + . + . + "aging" . + "false"^^ . + . + . + . + "31623"^^ . + "^\\d+$"^^ . + "Archival Resource Key" . + . + "1"^^ . + . . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . - . - . - "false"^^ . - "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID="^^ . - "genetic" . - . - . - . - . - . - . - . - "life science" . - . - . - "http://purl.obolibrary.org/obo/PROPREO_$1"^^ . - . - . - . - . - . - "Medical Dictionary for Regulatory Activities Terminology" . - "gene" . - . - . - . - "Sciflection" . - "General Enquiries" . - . - "false"^^ . - "gabdank@stanford.edu" . - "UniProt Resource" . - . - . - . - . - . - . - . - . - . - . - . - "CC2(C)C\\1CCC(C)/C=C/12"^^ . - . - "come" . - "^\\d+$"^^ . - . - . - "https://loinc.org/"^^ . - . - . - . - . - . - . - "Integrated Genomic Resources of human Cell Lines for Identification" . - "http://edamontology.org/format_"^^ . - "http://purl.obolibrary.org/obo/EPO_"^^ . - "http://purl.org/cerif/frapo/$1"^^ . - "jgrethe@ucsd.edu" . - . - . - . - . - . - "Basic Formal Ontology" . - . - . - . - . - . - . - "10153"^^ . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - "antweb" . - . - "NLXCHEM covers chemicals. Most classes are also in ChEBI."^^ . - "https://bioregistry.io/ccdc:"^^ . - "European Registry of Materials" . - "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."^^ . - "false"^^ . - . - . - "Publons publication" . - . - . - . - "OMA HOGs" . - "data visualization" . - . - "false"^^ . - . - "false"^^ . - . + . . - "100000"^^ . - . - . - "http://gmd.mpimp-golm.mpg.de/Analytes/"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/HTN_$1"^^ . - . - . - . - . - . - . - "Samuel Friedman" . - "protein" . - "Rice Metabolic Pathways" . - . - . - . - "cell biology" . - . - . - "Genomics Cohorts Knowledge Ontology" . - "https://bioregistry.io/pmap.substratedb:"^^ . - "meghan.balk@gmail.com" . - . - . - . - . - . - "^\\d{7}$"^^ . - "https://registry.identifiers.org/registry/$1" . - . - "false"^^ . - "https://omabrowser.org/oma/hog/HOG:"^^ . - . - "Alzforum_mut" . - "http://www.ecogene.org/gene/"^^ . - "https://bdsc.indiana.edu/stocks/$1"^^ . - "biomodels.kisao" . - . - . - "FR-FCM-ZYGW"^^ . - . - . - . - . - . - "http://purl.obolibrary.org/obo/SEPIO_$1"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "http://purl.bioontology.org/ontology/CSP/$1"^^ . - . - . - . - "Toxin and Toxin Target Database" . - . - . - "CPD-10330"^^ . - . - . - "GeneDB" . - "genome" . - "MultiCellDS" . - . - "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$"^^ . - "16793"^^ . - "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$"^^ . - "false"^^ . - "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees."^^ . - "Database of Spatially Interacting Motifs in Proteins" . - . - "false"^^ . - . - "Network of Different Plant Genomic Research Projects" . - "^\\d{7}$"^^ . - . - . - . - . - "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."^^ . - . - . - . - . - . - . - . - "mmp.fun" . - . - . - . - . - "ontology" . - . - "false"^^ . - . - . - . - . - . - "registry" . - "A set of guides on implementing various processes within hospitals or healthcare systems."^^ . - "ECMDB" . - . - . - "genome" . - . - . - . - . - "false"^^ . - . - . - . - "^S-[A-Z]{4}[\\-\\_A-Z\\d]+$"^^ . - . - . - "1010"^^ . - "medicinal chemistry" . - . - . - . - . - "1"^^ . - . - . - "Karel Berka" . - "biomedical science" . - "pathway" . - . - . - . - "obo" . - . - "^\\d+$"^^ . - "glycoepitope" . - . - . - . - . - "Scientific research institute for neuroscience, genetics, immunology, plant biology and more."^^ . - . - . - . - . - "hammer"^^ . - "^FCB\\d{3}$"^^ . - "^\\d{7}$"^^ . - "^MF_\\d+$"^^ . - . - "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time."^^ . - "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1"^^ . - . - "https://civicdb.org/links/gene/$1"^^ . - . - "false"^^ . - . - "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_"^^ . - . - . - "false"^^ . - . - "obo" . - "rnajunction" . - "https://biosimulators.org/simulators/"^^ . - "http://www.signaling-gateway.org/molecule/query?afcsid=$1"^^ . - . - . - "20090303"^^ . - . - . - "false"^^ . - "false"^^ . - "life science" . - "clo" . - . - "DI" . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - "ontology" . - . - . - "metabolite" . - . - . - "http://modelseed.org/biochem/reactions/"^^ . - . - "Identifier used by the Cancer Chemotherapy National Service Center."^^ . - . - . - . - "A collaborative project intended to create an encyclopedia documenting all living species known to science"^^ . - . - "disorder" . - . - "model" . - . - "Span" . - . - . - . - . - "International repository of Adverse Outcome Pathways."^^ . - "https://cropontology.org/rdf/CO_325:"^^ . + . + . + . + "dmendez@ebi.ac.uk" . + . + . + "http://www.ontobee.org/ontology/BCGO?iri=http://purl.obolibrary.org/obo/"^^ . + "ontology" . + . + . + "https://progenetix.org/services/ids/"^^ . + . + "agriculture" . + "^LBCTR\\d+$"^^ . + "http://gmd.mpimp-golm.mpg.de/Spectrums/"^^ . + . + "epidemiology" . + . + "Cell line collections (Providers)"^^ . + "false"^^ . + . + . + . + "identifier for the defunct/merged Publons website; URL redirects to Web of Science's P8372 (WOSID)"^^ . + . + "enzyme" . + . + "Tissue List" . + . + "life science" . + "false"^^ . + . + . + . + . + "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/"^^ . +_:Nfd4722f4f2fc4fdb85afda178e8669b4 "evoc@sanbi.ac.za" . + . + . + . + . + . + . + "ValidatorDB" . + "PubChem CID" . + . + "PathoPlant® is a database on plant-pathogen interactions and components of signal transduction pathways related to plant pathogenesis. PathoPlant® also harbors gene expression data from Arabidopsis thaliana microarray experiments to enable searching for specific genes regulated upon pathogen infection or elicitor treatment."^^ . + . + . + . + . + . + _:N7daf0920305247a2a9db552f15496084 . + . + . + . + "PKDB00198"^^ . + . + . + "vfb" . + . + "ontology" . + "http://purl.obolibrary.org/obo/AISM_"^^ . + "inaturalist.user" . + . + . + "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1"^^ . + "ontology" . + "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . + . + "false"^^ . + "http://purl.obolibrary.org/obo/NCRO_"^^ . + . + . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures."^^ . + "https://lobid.org/gnd/$1"^^ . + "D053716"^^ . + . + "ac" . + . + . + . + "Candida Genome Database" . + "http://terminology.hl7.org/CodeSystem/v2-"^^ . + . + . + "anatomy" . + "ensembl.bacteria" . + . + "tissue" . + . + . + "Cell line collections (Providers)"^^ . + . + "obo" . + . + . + "aspgd.protein" . + . + . + . + . + "veNOG12876"^^ . + . + . + . + "comparative genomics" . + . + . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . + "^\\d+$"^^ . + "GRIN (Germplasm Resources Information Network) Taxonomy for Plants provides information on scientific and common names, classification, distribution, references, and economic impact."^^ . + "pigqtldb" . + . + "https://reactome.org/content/detail/"^^ . + "Development Data Object Service" . + . + . + "^[0-9][A-Za-z0-9]{3}$"^^ . + . + "obo" . + "^\\w+$"^^ . + . + . + . + . + "UMLS_CUI" . + . + . + _:Nd282c8c166964c4586fa4146207b2dc9 . + . + "false"^^ . + . + . + "true"^^ . +_:N8e53bbafb12b465bbef6aa16cd609597 "helpdesk cropontology" . + "^\\d+$"^^ . + . + . + . + "https://flybase.org/reports/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + _:N43fb146bdd224e42a916a4eab2535bdc . + "Nicolas Matentzoglu" . + . + . + . + . + "molecules" . + "https://glytoucan.org/Structures/Glycans/$1"^^ . + "false"^^ . + . + "scientist" . + "plant" . + "Eschmeyer's Catalog of Fishes" . + "HGVPM623"^^ . + "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers."^^ . + "https://www.uniprot.org/arba/"^^ . + . + . + . + . + "https://data.4dnucleome.org/experiment-set-replicates/"^^ . + . + "biochemistry" . + . + "^WP\\d{1,5}(\\_r\\d+)?$"^^ . + . + . + . + . + "The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO)."^^ . + . + . + . + . + . + . + "ontology" . + . + . + . + . + "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules."^^ . + "institution" . + . + . + . + . + . + . + "biomedical science" . + "false"^^ . + . + "LOC_Os01g49190"^^ . + . + . + "http://purl.obolibrary.org/obo/REX_$1"^^ . + "metabolomics" . + "oryzabase.reference" . + . + . + "^[A-Z0-9]+$"^^ . + "ontology" . + "obo" . + . + "false"^^ . + "human genetics" . + "The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene Nomenclature Committee) project that names human genes. VGNC is responsible for assigning standardized names to genes in vertebrate species that currently lack a nomenclature committee."^^ . + . + "1-FEH+w3"^^ . + . + "chemspider" . + . + . + . + "stem cell" . + . + "bioinformatics" . + . + . + . + . + "http://n2t.net/ark:"^^ . + . + . + "aftol.taxonomy" . + . + . + . + . + . + "mimodb" . + "embryo" . + "biomedical science" . + . + . + . + "ontology" . + . + "BAO" . + . + "^D\\d+$"^^ . + "rs17852708"^^ . + "cohd" . + "https://cropontology.org/ontology/$1" . + "umbbd.reaction" . + "classification" . + . + "false"^^ . + . + . + "https://civicdb.org/links/sources/$1"^^ . + . + "false"^^ . + . + . + . + "ontology" . + . + . + "The Mouse Genome Database (MGD) project includes data on gene characterization, nomenclature, mapping, gene homologies among mammals, sequence links, phenotypes, allelic variants and mutants, and strain data."^^ . + "miRNA Target Prediction at EMBL" . + . + "2404"^^ . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances."^^ . + . + . + . + . + "medical informatics" . + "NARCIS provides access to scientific information, including (open access) publications from the repositories of all the Dutch universities, KNAW, NWO and a number of research institutes, which is not referenced in other citation databases."^^ . + . + . + . + "https://ror.org/$1"^^ . + "ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API."^^ . + . + . + "Histopathology Ontology" . + . + . + . + . + . + . + . + . + "false"^^ . + "Selventa Families" . + "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^ . + . + "CDC2"^^ . + . + . + . + "Gmelins Handbuch der anorganischen Chemie" . + . + "alejandra.gonzalez.beltran@gmail.com" . + "nsrrc" . + "dna" . + . + . + . + "https://biopragmatics.github.io/providers/hog/"^^ . + . + "ECOCYC"^^ . + "Liz Allen" . + . + "http://purl.uniprot.org/isoforms/"^^ . + . + . + . + "life science" . + . + "subject agnostic" . + "prints" . + "metagenomics" . + . + . + "Cell line collections (Providers)"^^ . + . + "biomedical science" . + . + "false"^^ . + . + . + . + . + "murine" . + . + . + "COCONUT (COlleCtion of Open Natural ProdUcTs) Online is an open source project for Natural Products (NPs) storage, search and analysis. It gathers data from over 50 open NP resources and is available free of charge and without any restriction. Each entry corresponds to a \"flat\" NP structure, and is associated, when available, to their known stereochemical forms, literature, organisms that produce them, natural geographical presence and diverse pre-computed molecular properties."^^ . + . + . + . + . + "Degradome Database" . + . + . + . + "^[0-9\\-_]+$"^^ . + . + . + "https://go.drugbank.com/metabolites/"^^ . + "^PAp[0-9]{8}$"^^ . + . + . + . + "https://github.com/$1"^^ . + "true"^^ . + . + . + . + . + . "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=$1"^^ . - . - . - "false"^^ . - . - . - . - . - "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions"^^ . - . - . - . - . - . - "239287"^^ . - "http://open-services.net/ns/core#$1"^^ . - . - "BiGG Compartment" . - . - . - "uniprot.resource" . - "tropicalis" . - . - "SubstrateDB" . - . - "Physico-chemical methods and properties" . - . - "ASPL0000349247"^^ . - . - . - . - "evolutionary biology" . - . - . - . - "http://purl.org/sig/ont/fma/fma"^^ . - "true"^^ . - "chemistry" . - "life science" . - . - . - . - "The Oryzabase is a comprehensive rice science database established in 2000 by rice researcher's committee in Japan."^^ . - . - . - . - "false"^^ . - . - . - "CATH superfamily" . - . - . - . - . - . - "demographics" . - . - . - . - . - . - "false"^^ . - . - . - "clinical studies" . + . + "277.9"^^ . + . + . + . + . + "anatomy" . + "http://aps.unmc.edu/AP/database/query_output.php?ID="^^ . + "http://purl.org/obo/owlEOL_"^^ . + . + . +_:Nc2e3ba42f6a046898fa70b628a52ec6c "Stephan Schurer" . + . + . + . + . + . + . + "MSV000082131"^^ . + "http://hawaii.eagle-i.net/i/$1"^^ . + "75"^^ . + . + . + "obo" . + . + . + . + . + "The Gmelin database is a large database of organometallic and inorganic compounds updated quarterly. It is based on the German publication Gmelins Handbuch der anorganischen Chemie which was originally published by Leopold Gmelin in 1817; the last print edition, the 8th, appeared in the 1990s."^^ . + . + "pathway" . + "ncbiprotein" . + "http://purl.obolibrary.org/obo/ZFA_$1"^^ . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species."^^ . + . + "https://www.metanetx.org/equa_info/$1"^^ . + . + "mosquito" . + "scretf" . + . + . + . + . + "CHEBI" . + . + "NONCODE v4 Transcript" . + . + "^\\d+$"^^ . + . + "456789"^^ . + . + . + "microbiology" . + "^rxn\\d+$"^^ . + "Cassava Trait Dictionary in template 5 - IITA - July 2015, updated in February 2016"^^ . + . + "biomedical science" . + . + "http://purl.obolibrary.org/obo/PSDO_$1"^^ . + "false"^^ . + . + . + "mpio" . + . + . + "https://pharmacome.github.io/conso/"^^ . + . + . + . + . + . + . + . + . + . + "Mosquito gross anatomy ontology" . + "biomedical science" . + . + "false"^^ . + . + . + "NIH HIV Reagent Program" . + . + "people/11035"^^ . + . + "Cancer Data Standards Registry and Repository" . + . + . + . + "false"^^ . + . + . + "https://biopragmatics.github.io/providers/hba/"^^ . + . + "^\\d{7}$"^^ . + "https://bioregistry.io/abcam:"^^ . + "BAMSC981"^^ . + "Plant Transcription Factor Database" . + . + . + . + . + . + "Cotton ontology from CottonGen database - June 2019"^^ . + . + . + "Ddinter is a comprehensive, professional, and open-access database specific to drug-drug interactions. it provides abundant annotations for each ddi association including mechanism description, risk levels, management strategies, alternative medications, etc. to improve clinical decision-making and patient safety."^^ . + . + . + . + . + "allergome" . + . + . + . + . + . + . + . + . + "biomedical science" . + . + "http://cdb.ics.uci.edu/cgibin/ChemicalDetailWeb.py?chemical_id=$1"^^ . + "molmedb" . + . + "Petra Fey" . + . + "epidemiology" . + . + . + "https://cropontology.org/rdf/CO_333:$1"^^ . + "pharmacogenomics" . + . + "nucleotide" . + . + . + . + . + . + . + . + . + . + "dna" . + . + "false"^^ . + "utrdb" . + . + "gsfa" . + "UniPathway Compound" . + "http://purl.obolibrary.org/obo/DINTO_$1"^^ . + "^\\d+$"^^ . + . + . + "true"^^ . + . + "ontology" . + "false"^^ . + . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_func_"^^ . + "http://dicom.nema.org/resources/ontology/DCM/$1"^^ . + . + . + . + . + . + . + "^\\d+$"^^ . + . + "0000071"^^ . + "http://www.ontology-of-units-of-measure.org/resource/om-2/"^^ . + "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID="^^ . + "false"^^ . + "anatomy" . + . + . + . + . + . + "dpv" . + "http://purl.obolibrary.org/obo/COB_"^^ . + . + . + "The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms."^^ . + . + . + . + "1cukA01"^^ . + . + . + "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId="^^ . + "http://purl.obolibrary.org/obo/DUO_$1"^^ . + . + . + . + . + "interaction" . + . + . + "mice" . + "liumeng94@sjtu.edu.cn" . + "experimental plant" . + . + . + . + "false"^^ . + "http://www.pharmgkb.org/gene/$1"^^ . + . + "false"^^ . + . + . + "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=$1"^^ . + . + . + . + "ChemIDplus is a web-based search system that provides access to structure and nomenclature authority files used for the identification of chemical substances cited in National Library of Medicine (NLM) databases. It also provides structure searching and direct links to many biomedical resources at NLM and on the Internet for chemicals of interest."^^ . + . + . + . + "hypercldb" . + . + . + "ontology" . + . + . + . + "ERP004492"^^ . + "sider.drug" . + . + . + "coconut" . + "Gemeinsame Normdatei" . + "EBI-366083"^^ . + "biomedical science" . + "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_$1"^^ . + . + . + . + "https://biopragmatics.github.io/providers/hba/$1"^^ . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/probe/?term="^^ . + "SNP to Transcription Factor Binding Sites" . + . + "lagonzalezmo@unal.edu.co" . + "^DRKS\\d+$"^^ . + . + "^\\d+(\\.\\d+(\\.\\d+(\\.\\d+)?)?)?$"^^ . + "https://cropontology.org/rdf/CO_340:"^^ . + "http://purl.obolibrary.org/obo/IPR_"^^ . + . + . + "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass=$1"^^ . + . + . + . + . + . + "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning."^^ . + . + "NeuronDB" . + . + "false"^^ . + "The Virtual Metabolic Human (VMH) is a resource that combines human and gut microbiota metabolism with nutrition and disease."^^ . + "https://www.glycoepitope.jp/epitopes/$1"^^ . + . + . + . + "^\\d{4}$"^^ . + . + . + "biomedical science" . + "false"^^ . + "^\\d{7}$"^^ . + . + . + "BitterDB Compound" . + . + . + . + . + . + . + . + . + . + "The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms Data submitted to SRA. It is organized using a metadata model consisting of six objects: study, sample, experiment, run, analysis and submission. The SRA study contains high-level information including goals of the study and literature references, and may be linked to the INSDC BioProject database."^^ . + . + . + . + "false"^^ . + . + . + . + "false"^^ . + "embryo" . + "Mark Engelstad" . + "kegg_genomes" . + "openalex" . + . + . + "oban" . + "NeuroVault Image" . + "OMA HOGs" . + . + . + "NBK331"^^ . + . + . + . + . + "false"^^ . + "true"^^ . + . + . + . + "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"^^ . + . + "53784"^^ . + . + . + "rouge" . + . + . + . + "life science" . + "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets."^^ . + . + "false"^^ . + . + . + . + . + "genomics" . + . + . + . + "cpga" . + . + "Yvonne Bradford" . + . + . + . + . + . + . + . + "European Genome-phenome Archive Study" . + "gerhard.mayer@rub.de" . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . + . + . + "preclinical studies" . + . + . + "wasila.dahdul@usd.edu" . + . + . + . + "Tatsuya Kushida" . + . + . + . + . + . + . + . + "human" . + "meetings" . + "0001079"^^ . + . . - . - . - . - . - "CAMEO Chemicals ID" . - . - "0000255"^^ . - . - . - "biomedical science" . - "http://www.tcdb.org/search/result.php?tc=$1"^^ . - . - "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative."^^ . - . - . - . - . - . - "^MMP\\d+.\\d+$"^^ . - . - "https://biopragmatics.github.io/providers/sfam/$1"^^ . - . - . - . - . - "European Nucleotide Archive" . - . + "ontology" . + . + . + . + . + "http://elm.eu.org/elms/elmPages/$1.html"^^ . + "Livestock Breed Ontology" . + "cao" . +_:N641d58cfc2994b59bbd0f1fa78f75e74 "vladimir.n.mironov@gmail.com" . + . + "Biolink Model Registry" . + . + . + "ontology" . + "chemistry" . + . + . + . + . + "DECIPHER CNV Syndromes" . + "^\\d+$"^^ . + . + . + . + . + "NeuroLex Dysfunction" . + . + . + . + "false"^^ . + . + "nlx.dys" . + "bioinformatics" . + . + . + . + "post-translational modification" . + "^\\d+$"^^ . + "SwissLipid" . + . + . + . + . + . + . + . + . + "Complex Portal" . + . + "^\\d{7}$"^^ . + "bandrow@gmail.com" . + . + . + . + "Oat trait dictionary started by Oat Global (http://oatglobal.org/) and improved by NIAB and PepsiCo"^^ . + "has responsible" . + "knockout" . + . + . + . + . + . + "life science" . + "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."^^ . + . + . + . + . + . + "http://wheat.pw.usda.gov/report?class=gene;name=$1"^^ . + "Os01t0883800-02"^^ . + . + . + . . - "KEGG Reaction Class" . - . - . - . - "https://cropontology.org/rdf/CO_330:"^^ . - . - "https://www.vmh.life/#gene/"^^ . - "The \"Codex General Standard for Food Additives\" (GSFA, Codex STAN 192-1995) sets forth the conditions under which permitted food additives may be used in all foods, whether or not they have previously been standardized by Codex. The Preamble of the GSFA contains additional information for interpreting the data. Users are encouraged to consult the Preamble when using this database."^^ . - . - . - . - "10015919"^^ . - . - . + "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$1"^^ . + . + . + . + . + "0000-0002-5355-2576"^^ . + "Publishing Roles Ontology" . + "345201101230312003"^^ . + . + . + . + "Tick Cell Biobank" . + "taxonomy" . + "genetic engineering" . + "https://openalex.org/"^^ . + . + . + . + "false"^^ . + "Cell line collections (Providers)"^^ . + . + "false"^^ . + "http://purl.obolibrary.org/obo/CEPH_$1"^^ . + "https://www.ebi.ac.uk/ena/browser/view/"^^ . + "false"^^ . + . + "234"^^ . + . + "0000088"^^ . + . + "http://purl.obolibrary.org/obo/CIDO_"^^ . + . + "PMID" . + . + "http://purl.obolibrary.org/obo/CTO_$1"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/TO_$1"^^ . + . + . + . + "mutant" . + . + . + "hcpcs" . + "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist="^^ . + "beiresources" . + . + . + "oryzabase.mutant" . + "https://amzn.com/"^^ . + . + . + "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue."^^ . + . + "false"^^ . + . + . + "controlled term" . + "60316"^^ . + "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. US patent documents date back to 1790, EPO and WIPO to 1978. Google Patents can be searched using patent number, inventor, classification, and filing date."^^ . + . + . + "false"^^ . + . + . + "https://www.uniprot.org/unirule/"^^ . + "false"^^ . + "090803"^^ . + "false"^^ . + "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"^^ . + "true"^^ . + . + . + . + "https://pharmacodb.ca/cell_lines/$1"^^ . + . + . + . + . + . + . + . + "https://bioregistry.io/tokue:"^^ . + . + . + "small molecule" . + "R. Burke Squires" . + "false"^^ . + "dna" . + "false"^^ . + "hgnc" . + . + "ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States."^^ . + "limore" . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information."^^ . + "Neurovault is an online repository for statistical maps, parcellations and atlases of the brain. This collection references sets (collections) of images."^^ . + . + "andreadega/systems-biology-compiler"^^ . + . + "life science" . + . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes."^^ . + . + . + . + "chemistry" . + "botany" . + "peptideatlas.dataset" . + "panther.family" . + . + . + "false"^^ . + "https://www.metanetx.org/chem_info/$1"^^ . + . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs."^^ . +_:Nb666dc69b4614275bdcddecad7d0f15a "vlee@ebi.ac.uk" . + . + . + "comptox" . + . + . + "intenz" . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/BFO_$1"^^ . + "https://cropontology.org/rdf/CO_327:$1"^^ . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/BOOTSTREP_"^^ . + . + . + . + "false"^^ . + "obo" . + "http://www.bioassayontology.org/bao#BAO_$1"^^ . + . + "montana.smith@pnnl.gov" . + . + "agilent.probe" . + . + . + . + "http://purl.obolibrary.org/obo/CLYH_"^^ . + . + . + . + "CCLE_867"^^ . + "https://swissmodel.expasy.org/repository/uniprot/"^^ . + . + . + "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid=$1"^^ . + . + . + . + . + . + "neXtProt is a resource on human proteins, and includes information such as proteins’ function, subcellular location, expression, interactions and role in diseases."^^ . + . + "obo" . + . + . + . + . + "ClinicalTrials.gov" . + . + "GrainGenes" . + "false"^^ . + "^\\d{7}$"^^ . + . + "UTRdb" . + "bpdb" . + . + . + . + . + "rpillich@ucsd.edu" . + . + "Assists in resolving data across cloud resources."^^ . + . + . + "flymine.chromosome" . + "^G\\d+$"^^ . + "fly" . + "false"^^ . + . + "panther.pthcmp" . + "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$"^^ . + . + "ogms/OMRE" . + . + . + "^[a-z]+(\\..*?)?$"^^ . + . + . + . + "http://purl.obolibrary.org/obo/OHPI_"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/PGDSO_$1"^^ . + "adrien.coulet@loria.fr" . + . + "A hierarchical classification of congenital heart disease "^^ . + . + "https://www.datanator.info/metabolite/"^^ . + . + . + . + "http://www.kegg.jp/entry/"^^ . + . + "https://w3id.org/sssom/$1"^^ . + . + . + "ENVO" . + . + "Clinical measurement ontology" . + . + "The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology"^^ . + . + . + "EDI_244000"^^ . + . + "Human Gene Mutation Database" . + "Wikidata Property" . + "https://aopwiki.org/stressors/$1"^^ . + . + . + "genomics" . + . + . + . + "Assembling the Fungal Tree of Life - Taxonomy" . + "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=$1"^^ . + . + "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information."^^ . + "Cell Lines Service" . + . + "AOPWiki (Key Event Relationship)" . + "false"^^ . + . + "ontology" . + . + "^CLPUB\\d+$"^^ . + . + . . - "0000411"^^ . - . - "bioschemas" . - "bto" . - . - . - . - "^\\d{7}$"^^ . - . - "ontology" . - . - "Ontology of Host Pathogen Interactions" . - . - . - "chemistry" . - . - . - . - "HDAA2" . - "0000435"^^ . - "mpidb" . - . - . - "cpd15380"^^ . - . - . - "SNOWMEDCT_US" . - "virology" . - . - "protein" . - "enzyme" . - . - . - . - . - . - "tobias.schulze@ufz.de" . - "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id="^^ . - . - . - . - . - . - . - "computer science" . - . - "^PD\\d+$"^^ . - . - . - . - "James C. Hu" . - . - . - . - . - "gpmdb" . - . - . - "101"^^ . - "The Statistical Methods Ontology" . - . - "Variants in dbVar."^^ . - . - . - . - . - . - . - "7499841"^^ . - "^\\d+$"^^ . - "An ontology of prokaryotic phenotypic and metabolic characters"^^ . - . - "http://www.ubio.org/browser/details.php?namebankID="^^ . - "An ontology of human and animal behaviours and behavioural phenotypes"^^ . - . - "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . - . - . - . - "^\\d{7}$"^^ . - "false"^^ . - . - . - . - . - . - . - "life science" . - . - . - "Rat Resource and Research Center" . - . - "https://cropontology.org/rdf/CO_348:"^^ . - . - . - . - . - . - . - . - "go.chebi" . - . - . - . - "obo" . - . - "kegg.orthology" . - . - . - "^D\\d+$"^^ . - . - . + . + "jgrethe@ucsd.edu" . + "MGnify Sample" . + . + . + "http://erop.inbi.ras.ru/result2.php?PepName=$1"^^ . + . + . + . + "ontology" . + . + . + . + "https://www.ebi.ac.uk/interpro/genomeproperties/#"^^ . + . + "anatomy" . + . + "Collection"^^ . + . + . + "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms."^^ . + . + . + "EAWAG Biocatalysis/Biodegradation Database" . + "2526"^^ . + . + . + . + . + . + "botany" . + "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."^^ . + . + . + "modeldb.concept" . + "Fungal Nomenclature and Species Bank" . + "0019030"^^ . + . + . + "Evidence Items are the central building block of the Clinical Interpretation of Variants in Cancer (CIViC) knowledgebase. The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic ‘event’ that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract)."^^ . + "obo" . + . + . + "dna" . + "http://purl.obolibrary.org/obo/MmusDv_$1"^^ . + . + "botany" . + "life science" . + . + "false"^^ . + "http://www.w3.org/ns/activitystreams#$1"^^ . + . + "Potato ontology" . + "imsr_tac" . + . + "http://www.cvrgrid.org/files/ECGOntologyv1.owl#ECG_$1"^^ . + "https://biopragmatics.github.io/providers/dhba/$1"^^ . + "bbkg" . + . + "false"^^ . + "http://www.fairsharing.org/ontology/subject/SRAO_$1"^^ . + . + . + "biochemistry" . + . + . + "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation. This is a prefix for referencing identifiers in the minid test namespace. "^^ . + . + . + . + . + . + . + "ADM1"^^ . + "mim.ps" . + . + "20003"^^ . + . + . + "publons.researcher" . + "^\\d+$"^^ . + . + . + . + . + . + "http://edamontology.org/operation_"^^ . + "cmo" . + "cellular neuroscience" . + "https://www.ebi.ac.uk/ols/ontologies/teddy/terms?iri=http://identifiers.org/teddy/TEDDY_"^^ . + "false"^^ . + "http://purl.obolibrary.org/obo/AGRO_$1"^^ . + "ons" . + "aaindex" . + "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."^^ . + . + . + . + "ontology" . + . + . + . + . + . + "https://www.flymine.org/flymine/report/ChromosomeBand/$1"^^ . + . + . + "Yeast Phenotype Ontology" . + . + "chemistry" . + "false"^^ . + . + . + . + "ontology" . + . + . + "false"^^ . + . + . + "9606"^^ . + . + "https://www.ebi.ac.uk/miriam/main/$1"^^ . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to reaction information."^^ . + . + . + . + . + "pdb-ccd" . + "377369"^^ . + . + "covid19" . + "fly lines" . + . + "mpath" . + . + . + . + . + "dna" . + . + "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=$1"^^ . + . + . + "structure" . + . + . + . + . + "ScerTF" . + "00000105"^^ . + "http://www.cellresource.cn/cellsearch.aspx?sc=1&where="^^ . + . + . + . + . . - "chemistry" . - "A Systematic Annotation Package for Community Analysis of Genomes" . - "wormpep" . - "http://purl.obolibrary.org/obo/FBdv_"^^ . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/ECTO_"^^ . - "M00002"^^ . - . - . - "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download."^^ . - . - "true"^^ . - "ontologies" . -_:N00dd48a93db94d54a9aa2b15d889c7fd "mb4@sanger.ac.uk" . - . - "false"^^ . - "100291"^^ . - . - . - . - "https://www.genenames.org/cgi-bin/gene_symbol_report?match=$1"^^ . - . - . - "^BSU\\d{5}$"^^ . - . - . - . - . - . - . - . - . - . - "Lynn Schriml" . - "genefarm" . - . - "http://purl.obolibrary.org/obo/LABO_"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "https://proteinensemble.org/"^^ . - . - . - . - . - "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=$1"^^ . - . - . - "^\\w{1,3}$"^^ . - . - . - . - "^DB\\d{5}$"^^ . - . - . - "agriculture" . - . - "Confidence Information Ontology" . - "http://jcggdb.jp/idb/jcggdb/"^^ . - . - "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/"^^ . - . - "4DNSR73BT2A2"^^ . - . - . - . - . - "Sirarat Sarntivijai" . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - "false"^^ . - . - "false"^^ . - . - . - . - . - "68513255-fc44-4041-bc4b-4fd2fae7541d"^^ . - "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/"^^ . - . - . - "2"^^ . - . - . - "22-46615880-T-C"^^ . - . - . - . - . - . - . - "drug metabolism" . - . - "ontology" . - "Mammalian Feeding Muscle Ontology" . - . - . - "hc.npn" . - "^\\d+$"^^ . - . - . - "^\\d{1,5}$"^^ . - "false"^^ . - . - "^\\d{7}$"^^ . - "CAID" . - . - . - "biodiversity" . - . - . - . - . - . - "http://search.sisuproject.fi/#/variant/"^^ . - . - "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1"^^ . - . - . - "GSTA1"^^ . - . - "obo" . - . - . - "false"^^ . - "cameo" . + . + . + . + . + . + . + . + "obib" . + "wdduncan@gmail.com" . + . + . + "SNOMEDCT_US_2021_07_31" . + . + . + . + . + "Life cycle stages for Mus Musculus"^^ . + "ontology" . + . + "EcoliWiki from EcoliHub" . + "ms" . + . + "dbvar.variant" . + "computational chemistry" . + "Ensembl Bacteria" . + . + . + . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The UM-BBD Pathway Prediction System (PPS) predicts microbial catabolic reactions using substructure searching, a rule-base, and atom-to-atom mapping. The PPS recognizes organic functional groups found in a compound and predicts transformations based on biotransformation rules. These rules are based on reactions found in the UM-BBD database. This collection references those rules."^^ . + . + . + "konigmatt@googlemail.com" . + "http://purl.obolibrary.org/obo/OHD_$1"^^ . + . + . + . + "protein" . + . + . + . + . + . + . + "ontology" . + . + . + "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite."^^ . + . + "obo" . + . + . + "G24361QY"^^ . + . + "David Blackburn" . + . + . + "chemical" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/GENO_"^^ . + . + "anatomy" . + "https://cropontology.org/rdf/CO_335:$1"^^ . + "ModelDB is a curated, searchable database of published models in the computational neuroscience domain. It accommodates models expressed in textual form, including procedural or declarative languages (e.g. C++, XML dialects) and source code written for any simulation environment."^^ . + "EMAPA_RETIRED" . + "scop" . + . + . + . + . + . + "biomedical science" . + . + . + . + . + "eukaryotic Subcellular Localization database" . + "false"^^ . + . + . + . + . + . + . + "phylogenetics" . + . + . + "RNA SSTRAND" . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + "ontology" . + . + . + "false"^^ . + "2023"^^ . + . + "http://purl.obolibrary.org/obo/VHOG_$1"^^ . + "0000029"^^ . + . + . + . + "Linear double stranded DNA sequences" . + "false"^^ . + . + "bioinformatics" . + . + "Medical Subject Headings vocabulary is the set of predicates used in the MeSH RDF dump"^^ . + . + . + . + "sequence" . + . + . + . + "^\\d+$"^^ . + "gene mapping" . + "embryology" . + . + "https://biopragmatics.github.io/providers/peff/"^^ . + "https://bioregistry.io/ccdc:"^^ . + "false"^^ . + . + . + . + "life science" . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + "^[a-z0-9\\-]+$"^^ . + "false"^^ . + "metagenomics" . + . + . + "vgnc" . + "http://hpc-bioinformatics.cineca.it/fusion/cell_line/"^^ . + . + . + . + "001"^^ . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . + . + . + . + . + . + . + . + "bioinformatics" . + . + . + . + . + . + . + . + . + . + "P12345"^^ . + "0000038"^^ . + "http://purl.obolibrary.org/obo/FAO_"^^ . + "cell biology" . + . + "statistics" . + . + . + "genome" . + "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats."^^ . + . + "bugbase.expt" . + . + "Amanda Hicks" . + . + . + . + . + . + "false"^^ . + "Karen Eilbeck" . + "KEGG Glycan" . + . + . + . + "ontology" . + . + . + "Wasila Dahdul" . + . + . + . + "dggr" . + "nlx.func" . + . + "false"^^ . + . + . + . + . + . + "http://metnetonline.org/browse_pathway2.php?pthID="^^ . + "vertebrate" . + "biomedical science" . + . + "vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 \"historical homology\". Each mapping has been manually reviewed, and we provide confidence codes and references when available."^^ . + . + "^[0-9]+$"^^ . + . + "bacdive" . + "^\\w+$"^^ . + . + . + "http://www.kegg.jp/entry/$1"^^ . + . + "Alzforum mutations is a repository of genes and rare variants associated with Alzheimer's disease."^^ . + "mutations" . + . + . + "The pattern for identifiers in the given resource" . + . + . + . + "false"^^ . + "genome" . + "aspgd.locus" . + "fhir.implementation" . + "false"^^ . + . + . + . + . + "272"^^ . +_:N4dc05b1caeac4b4d91be4661e7a222e7 "Crop Ontology Helpdesk" . + "transcriptomics" . + "^\\d+$"^^ . + "matrixdb" . + . + . + . + . + . + "classification" . + . . - . - . - "https://bartoc.org/en/node/$1"^^ . - . - . - "chembl" . - . - . - . - . - . + "false"^^ . + . + . + "Theoretical explanation of to a purely spatiotemporal ontology of change and process, as part of a modular ontology of the dynamic features of reality."^^ . + . + . + . + . + . + . + . + . + . + . + "XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis."^^ . + "^\\d{7}$"^^ . + . + . + "false"^^ . + . + . + . + "https://omabrowser.org/oma/hog/HOG:"^^ . + "MycoBrowser smegmatis" . + . + . + . + "false"^^ . + "117145750"^^ . + . + . + . + . + "PDB ligand" . + "TreeBASE" . + . + "ontology" . + . + . + . + "^[A-Za-z0-9]+$"^^ . + . + . + . + . + . + . + . + . + . + . + "0000021"^^ . + "molecular biology" . + "TTD Drug" . + . + "dbvar.study" . + . + . + . + "00000268"^^ . + "false"^^ . + "fyeco" . + "https://www.kegg.jp/entry/$1"^^ . + . + . + "SNOMECT" . + "cells" . + "classification" . + "https://metabolicatlas.org/identifier/MetabolicAtlas/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "ricenetdb.mirna" . + "Index Fungorum" . + "co_336" . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + "^D\\d+$"^^ . + . + "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-$1"^^ . + . + "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=$1"^^ . + . + . + . + . + . + . + "1000"^^ . + "http://purl.obolibrary.org/obo/CTENO_$1"^^ . + "https://knowledge.lonza.com/cell?id="^^ . + "PDBsum provides an overview of every macromolecular structure deposited in the Protein Data Bank (PDB), giving schematic diagrams of the molecules in each structure and of the interactions between them."^^ . + "http://purl.org/spar/bido/$1"^^ . + "https://bioregistry.io/pesticides:"^^ . + "protein" . + . + . + . + "teddy" . + . + . + . + . + . + . + . + . + . + "^(bmr|bmse|bmst)?[0-9]{1,6}$"^^ . + . + . + . + . + "true"^^ . + . + . + . + . + . + "afo" . + . + . + . + . + . + "0001"^^ . + "S1"^^ . + "ontology" . + . + . + "chemistry" . + . + "false"^^ . + . + "http://splicenest.molgen.mpg.de/cgi-bin/splicegraph.cgi?cluster="^^ . + "UniProt journal" . + "^\\d+$"^^ . + "gabdank@stanford.edu" . + . + . + "System Science of Biological Dynamics project" . + . + . + . + "funcbase.human" . + "false"^^ . + . + . + "01.01.005"^^ . + "arraymap" . + "http://purl.obolibrary.org/obo/HSO_"^^ . + . + "foodb.food" . + . + . + . + . + "https://swbiodiversity.org/seinet/taxa/index.php?taxon=$1"^^ . + . + "zenodo" . + . + "https://www.kew.org/data/grasses-db/www/$1"^^ . + . + . + "classification" . + "chemistry" . + . + . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view."^^ . + "false"^^ . + "false"^^ . + . + "jfernand@um.es" . . - . - . - . - . - . - . - . - . - . - "protein" . - . - "https://bioregistry.io/dashr.expression:"^^ . - . - . - . - "ArrayGroup"^^ . - "virology" . - "A_24_P98555"^^ . - . - . - . - "Gm00047"^^ . - . - . - "A structured controlled vocabulary of the anatomy of mosquitoes."^^ . - "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - "peff" . - . - "pathway" . - "false"^^ . - . - "NLFFF Database" . - . - . - . - . - . - _:Nbb9e881fa6a1437d9071cb8f83b46898 . - . - "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid="^^ . - "false"^^ . - "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . - . - "MedlinePlus Health Topics" . - . - . - . - "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#"^^ . - . - "Cell line collections (Providers)"^^ . - "neuroscience" . - . - . - . - . - "false"^^ . - . - . - "http://eugenes.org:7072/.bin/fbidq.html?$1"^^ . - . - . - . - . - . - . - . - "ontology" . - "InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation."^^ . - . - . - "ontology" . - . - . - . - . - "false"^^ . - "https://www.wwpdb.org/pdb?id=$1"^^ . - . - . - . - . - . - . + "https://cls.shop/"^^ . + . + . + . + "false"^^ . + . + . + . + "GSTA1"^^ . + "false"^^ . + "https://repo.napdi.org/study/$1"^^ . + . + . + . + "^\\d{7}$"^^ . + "FMA_RETIRED" . + "The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO."^^ . + . + . + "obo" . + "false"^^ . + "Iranian Registry of Clinical Trials" . + . + "life science" . + . + . + . + "ontology" . + . + "Christophe Dunand" . + . + "protein structure" . + "uniprot.ptm" . + "LIPID MAPS" . + "oslc" . + . + . + . + "regulation" . + . + . + "GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data. GlyGen retrieves information from multiple international data sources and integrates and harmonizes this data."^^ . + . + "http://purl.obolibrary.org/obo/VTO_"^^ . + . + . + . + . + "Legacy site for IETF RFC proposals"^^ . + "http://purl.obolibrary.org/obo/NCIT_$1"^^ . + "http://purl.obolibrary.org/obo/FBdv_$1"^^ . + . + . + "Ontology for Chemical Kinetic Reaction Mechanisms" . + "18"^^ . + "An ontology of Drosophila melanogaster developmental stages."^^ . + . + "EchoBASE is a database designed to contain and manipulate information from post-genomic experiments using the model bacterium Escherichia coli K-12. The database is built on an enhanced annotation of the updated genome sequence of strain MG1655 and the association of experimental data with the E.coli genes and their products."^^ . + . + "fplx" . + . + . + . + . + . + . + "false"^^ . + . + . + "PNS12@cam.ac.uk" . + "IC9CM" . + . + . + . + . + . + . + "https://cls.shop/$1"^^ . + . + "false"^^ . + "co_358" . + "https://models.physiomeproject.org/workspace/$1"^^ . + "https://www.e-cyanobacterium.org/bcs/entity/"^^ . + "grouping" . + "false"^^ . + "The Human Protein Reference Database (HPRD) represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome."^^ . + . + . + . + . + "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . + . + . + . + . + . + "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references receptors."^^ . + "https://cstr.cn/"^^ . + "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id="^^ . + . +_:N9e9771e602eb4413b1a7aa32485aa5b5 "cs@firstdatabank.com" . + . + "ontology" . + "life science" . + . + "http://purl.obolibrary.org/obo/SEPIO_"^^ . + "hc.din" . + "ViolinNet" . + "pseudogene.org" . + "Patrice Buche" . + . + . + "Plant Phenology Ontology" . + "comparative genomics" . + "^[A-Za-z0-9-]+$"^^ . + . + . + "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis"^^ . + . + "http://www2.idac.tohoku.ac.jp/dep/ccr/TKGdate/TKGvol08/$1.html"^^ . + . + . + "false"^^ . + "PubChem_Compound_CID" . + . + "kerafast" . + . + "https://biopragmatics.github.io/providers/uniprot.ptm/$1"^^ . + . + "The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs."^^ . + "false"^^ . + . + . + . + "A biological ontology to standardize and integrate Integrative and Conjugative Element (ICE) information and to support computer-assisted reasoning."^^ . + . + . + . + . + . + . + . + . + "OMA Protein" . + "dip" . + . + "http://purl.obolibrary.org/obo/DRON_$1"^^ . + . + . + "A person" . + "http://purl.obolibrary.org/obo/NCBITaxon_$1"^^ . + . + . + . + . + . + . + "false"^^ . + . + . + "ontology" . + . + . + . + "dna" . + "Illumina probe identifiers for microarrays, such as those in Illumina HumanRef-6 v2.0 expression beadchip."^^ . + . + "0100002"^^ . + . + . + . + "https://cropontology.org/rdf/CO_330:$1"^^ . + "http://purl.obolibrary.org/obo/MP_"^^ . + "global health" . + "health monitoring" . + . + "SciCrunch Registry" . +_:N559401d0120e4ad591fe8463d3f0d80f "Jonathan Bard" . + . + "immunogenetics" . + "TAIR Protein" . + "false"^^ . + . + . + "EcoLexicon" . + . + "The Cambridge Stuctural Database (CSD) is the world's most comprehensive collection of small-molecule crystal structures. Entries curated into the CSD are identified by a CSD Refcode."^^ . + . + "The Intermediate Filament Database functions as a continuously updated review of the intermediate filament field and it is hoped that users will contribute to the development and expansion of the database on a regular basis. Contributions may include novel variants, new patients with previously discovered sequence and allelic variants."^^ . + . + "Marc Ciriello" . + "human geography" . + . + . + "imex" . + . + "hendrik.borgelt@tu-dortmund.de" . + "genefarm" . + "VB.Ob.3736.GRSM125"^^ . + . + . + . + . + . + . + "vaccines" . + . + "developed by ICARDA - Dec 2018"^^ . + "dbpedia" . + "CADAFLAT00006211"^^ . + "^\\d{5}$"^^ . + "computational biology" . + . + "^\\d+$"^^ . + . + . + "chemical" . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by tissue."^^ . + . + "rna" . + "ontology" . + "Mammalia Polymorphism Database" . + "mirbase" . + "https://civicdb.org/links/gene/$1"^^ . + . + . + . + . + "Cowpea Trait Dictionary in template v5 - IITA - August 2015"^^ . + "pathway" . + "subject agnostic" . + . + "https://dbpedia.org/ontology/"^^ . + . + . + . + "life science" . + . . - . - . - "^\\d+$"^^ . - "protein" . - . - . - "ontology" . - . - "Yeast-cell-cycle-Irons-J-Theor-Biol-2009"^^ . - "BioMagResBank" . - . - . - . - . - . - . - "Prefix Commons" . - . - "false"^^ . - . - . - . - . - "obo" . - "http://www.case.edu/EpilepsyOntology.owl#"^^ . - . - . - . - . - . - "anatomy" . - . - . - "ontology" . - . - . - "Internet Standard -- IETF Request for Comments" . - . - "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1"^^ . - . - . - "^\\d{7}$"^^ . - . - "Data Commons" . - "The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank."^^ . - . - "ontology" . - "Geomames" . - . - "protein" . - "ontology" . - "false"^^ . - . - "stato" . - . - "https://scicrunch.org/resolver/RRID:$1"^^ . - . - "Oryza Tag Line" . - . - . - . - "anatomy" . - "(Re)Building a Kidney is an NIDDK-funded consortium of research projects working to optimize approaches for the isolation, expansion, and differentiation of appropriate kidney cell types and their integration into complex structures that replicate human kidney function."^^ . - "Banco de Celulas do Rio de Janeiro" . - . - . - . - "https://www.atcc.org/products/"^^ . - . - . - . - . - "https://proteininformationresource.org/cgi-bin/resid?id="^^ . - . - "aquaculture" . - "fly" . - . - . - . - "https://w3id.org/seo#"^^ . - . - . - "pathway" . - . - . - "terms4FAIRskills" . - . - . - "http://exac.broadinstitute.org/variant/$1"^^ . - . - . - . - "https://scicrunch.org/resolver/RRID:"^^ . - . - . - . + . + "https://bioregistry.io/csd:"^^ . + "DragonDB Allele" . + "Sabrina@tislab.org" . + . + . + . + . + . + "mouse" . + . + "Vertebrate trait ontology" . + . + . + "https://radlex.org/RID/$1"^^ . + . + . + . + . + . + . + "population genetics" . + . + "plant anatomy" . + . + "model" . + . + . + . + "false"^^ . + . + . + . + . + "false"^^ . + "John Beverly" . + "^[0-9\\.]+$"^^ . + "medicine" . + . + . + . + . + . + "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=$1"^^ . + "LINCS_LDP" . + . + . + "Progenetix" . + "protein" . + . + . + . + . + . + . + . + . + "obo" . + . + . + . + "https://www.e-cyanobacterium.org/bcs/entity/$1"^^ . + . + . + . + . + "^C\\d+$"^^ . + . + "^AA\\d{4}$"^^ . + . + . + . + . + . + "ontology" . + . + . + . + "FOAF is a project devoted to linking people and information using the Web. Regardless of whether information is in people's heads, in physical or digital documents, or in the form of factual data, it can be linked. FOAF integrates three kinds of network: social networks of human collaboration, friendship and association; representational networks that describe a simplified view of a cartoon universe in factual terms, and information networks that use Web-based linking to share independently published descriptions of this inter-connected world."^^ . + . + "Rudolf T. Pillich" . + "ontology" . + "728"^^ . + "International repository of Adverse Outcome Pathways."^^ . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/PROCO_"^^ . + . + "http://purl.obolibrary.org/obo/SCDO_$1"^^ . + . + . + . + "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM."^^ . + . + . + . + "https://lotus.naturalproducts.net/compound/lotus_id/$1"^^ . + "241"^^ . + "false"^^ . + . + "antibody" . + . + . + . + . + . + . + "090201"^^ . + . + . + "false"^^ . + "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies."^^ . + "false"^^ . + "^\\d+$"^^ . + . + . + . + "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-"^^ . + "kaggle" . + . + "dna" . + . + . + "UPa" . + . + . + . + "^\\d+$"^^ . + . + . + "4D Nucleome Data Portal Biosource" . + "life science" . + "false"^^ . + . + . + "ontology" . + . + . + . + . + . + "1"^^ . + "Selventa legacy disease namespace used with the Biological Expression Language"^^ . + "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references gene information."^^ . + . + "false"^^ . + "homd.seq" . + "GWAS Central Marker" . + . + "tetrahymena thermophila" . + "mgilson@health.ucsd.edu" . + . + . + . + . +_:N1941aa3acb794f359c0dab40a07927ba "Crop Ontology Helpdesk" . + "Pathogen Transmission Ontology" . + . + "database management" . + "obo" . + "cell line" . + "http://open-services.net/ns/core#"^^ . + . + . + "https://reaxys.emolecules.com/cgi-bin/more?vid="^^ . + . + . + . + . + . + . + "wikidata" . + "https://catalog.bcrc.firdi.org.tw/BcrcContent?bid=$1"^^ . + . + "true"^^ . + "db-object-id"^^ . + . + . + . + . + . + . + "ontology" . + "^(MAM\\d{5}\\w)|(MAR\\d{5})$"^^ . + . + "1000"^^ . + "emaps" . + . + "microbial" . + . + . + . + . + "^[a-z_A-Z0-9]+$"^^ . + "23fa7b4b-9d68-429b-aece-658b11124bb3#2017-03-24T18:43:16.886826-05:00"^^ . + . + . + . + . + . + . + . + . + . + "50943"^^ . + "life science" . + . + . + . + "bao" . + "false"^^ . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_qual_$1"^^ . + . + . + . + . + . + . + . + "rnacentral" . + . + _:Ncc707838a44a4b9caf3c1e9d821712ea . + . + . + "fisheries science" . + . + . + . + "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs)."^^ . + . + . + . + . + "developmental biology" . + . + . + . + . + . + . + . + "Inge.Jonassen@uib.no" . + . + "http://neuromorpho.org/neuron_info.jsp?neuron_name=$1"^^ . + "00000001"^^ . + . + . + "Dublin Core Types" . + "CRISP" . + "knowledge graph" . + . + "0000111"^^ . + . + "owl" . + . + . + . + . + . "biochemistry" . - "life science" . - "false"^^ . - . - "^\\d+$"^^ . - . - . - "genomics" . - "https://w3id.org/sssom/"^^ . - . - "Bactibase is a database describing the physical and chemical properties of bacteriocins from gram-negative and gram-positive bacteria."^^ . - . - "^\\d+$"^^ . - "Guy Cochrane" . - "false"^^ . - . - . - . - "embryology" . - . - "consulting" . - "botany" . - "Deutsche Sammlung von Mikroorganismen und Zellkulturen" . - . - "true"^^ . - . - . - . - . - "false"^^ . - . - "ontology" . - . - . - . - . - "morpheus.lab/morpheus"^^ . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/birnlex_$1"^^ . - "false"^^ . - . - "An ontology for data retrieval and exchange in the fields of multiple DNA/RNA alignment, protein sequence and protein structure alignment."^^ . - . - "^\\d+$"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/FLOPO_"^^ . - . - . - "https://www.uniprot.org/unirule/"^^ . - "Gramene Reference" . - . - "ontology" . - . - . - . - . - . - "^[a-z_A-Z]+$"^^ . - . - . - . - "aspgd.locus" . - "breeding" . - "https://data.terra.bio/ga4gh/drs/v1/objects/"^^ . - . - "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning."^^ . - . - . - "^HMDB\\d+$"^^ . - "J0705A10"^^ . - "cito" . - . - . - . - _:Na7005e8d9c2d4562a087947131137d39 . - . - "Cell Signaling Technology Pathways" . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - "Marie-Angélique Laporte" . - "comparative genomics" . - . - . - "dna" . - "genes" . - . - . - . - "^\\d+$"^^ . - . - . - . - "function" . - "false"^^ . - "panorama" . - . - "https://www.kazusa.or.jp/huge/gfpage/"^^ . - "UPLOC" . - "https://www.ncbi.nlm.nih.gov/medgen/"^^ . - . - . - "https://catalog.hathitrust.org/Record/"^^ . - "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^ . - "FDA Submission Tracking Number" . - . - "life science" . - "http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/$1.html"^^ . - . - "conso" . - . - "^\\d{7}$"^^ . - . - . - "cherry@genome.stanford.edu" . - . - . - . - "^UPC\\d{5}$"^^ . - . - . - . - . - . - "gene" . - "https://www.ebi.ac.uk/miriam/main/$1"^^ . - "PhosphoPoint Phosphoprotein" . - "false"^^ . - . - . - "^\\d+$"^^ . - . - . - "pathway" . - . - . - . - . - . - "rna" . - "inbred rat strain" . - . - . - . - "^\\d+$"^^ . - "^casent\\d+(\\-D\\d+)?$"^^ . - "https://biopragmatics.github.io/providers/bs/$1"^^ . - "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis."^^ . - . - . - "medical microbiology" . - . - . - . - . - "^[CD]\\d+$"^^ . - . - . - "http://www.w3.org/ns/dcat#$1"^^ . - . - . - . - . - . - . - . - . + . + _:N58611fcf82194703923654500373e06f . + . + . + . + . + "lonza" . + "^\\d+$"^^ . + . + . + "ahamosh@jhmi.edu" . + . + . + . + "biochemistry" . + . + "data management" . + "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=$1"^^ . + . + . + . + . + . + "ontology and terminology" . + "Oryzabase Mutant" . + . + . + . + . + . + "physics" . + . + . + . + . + "MMSL_CODE" . + "false"^^ . + . + "ncro" . + . + "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1"^^ . + "^SAM[NED](\\w)?\\d+$"^^ . + . + . + . + "FAIRsharing" . + . + . + . + . + . + . + . + . + "190000021540"^^ . + "http://geneontology.org/docs/gene-product-information-gpi-format/#"^^ . + "ontology" . + "false"^^ . + "gene" . + "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=$1"^^ . + . + . + . + "inhand" . + "^\\d+$"^^ . + "EDAM Data" . + . + "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=$1"^^ . + . + "Google Books" . + . + . + "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id="^^ . + "https://www.atcc.org/products/$1"^^ . + . + "Bilateria anatomy" . + "0000550"^^ . + . + . + . + . "7345"^^ . - . - "http://ctdbase.org/detail.go?type=gene&acc=$1"^^ . - . - "metascience" . - . - "TS-0285"^^ . - . - . - . - . - . - "knowledge and information systems" . - . - "structure" . - . - . - . - . - . - . - "developmental biology" . - . - . - . - "S/MARt DB collects information about scaffold/matrix attached regions and the nuclear matrix proteins that are supposed be involved in the interaction of these elements with the nuclear matrix."^^ . - "protein" . - "ontology" . - "https://www.ebi.ac.uk/gwas/studies/$1"^^ . - "genetics" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "https://covid19.sfb.uit.no/api/records/"^^ . - "cell lines" . - . - . - . - . - . - "false"^^ . - . - "nmrshiftdb2" . - . - . - "false"^^ . - . - "Q-2958"^^ . - "co_343" . - "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1"^^ . - . - . - "ecto" . - "ontology" . - . - . - "https://www.scopus.com/authid/detail.uri?authorId="^^ . - "kerafast" . - . - . - . - "Golm Metabolome Database GC-MS spectra" . - . - . - . - . - . - . - . - . - "gene expression" . - . - . - "http://purl.obolibrary.org/obo/ORNASEQ_"^^ . - "false"^^ . - "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#$1"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - "SchemaDefinition"^^ . - . - . - "viroligo" . - . - . - "traits" . - "DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . - . - "3517823"^^ . - "cell biology" . - . - "map" . - . - "graingenes.reference" . - "https://mediadive.dsmz.de/medium/"^^ . - . - "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=$1"^^ . - "jaxmice" . - . - . - . - "false"^^ . - "0000052"^^ . - . - "The Compendium is popularly referred to as the \"Gold Book\", in recognition of the contribution of the late Victor Gold, who initiated work on the first edition. It is one of the series of IUPAC \"Colour Books\" on chemical nomenclature, terminology, symbols and units (see the list of source documents), and collects together terminology definitions from IUPAC recommendations already published in Pure and Applied Chemistry and in the other Colour Books.\n\nTerminology definitions published by IUPAC are drafted by international committees of experts in the appropriate chemistry sub-disciplines, and ratified by IUPAC's Interdivisional Committee on Terminology, Nomenclature and Symbols (ICTNS). In this edition of the Compendium these IUPAC-approved definitions are supplemented with some definitions from ISO and from the International Vocabulary of Basic and General Terms in Metrology; both these sources are recognised by IUPAC as authoritative. The result is a collection of nearly 7000 terms, with authoritative definitions, spanning the whole range of chemistry."^^ . - "A CIViC Gene Summary is created to provide a high-level overview of clinical relevance of cancer variants for the gene. Gene Summaries in CIViC focus on emphasizing the clinical relevance from a molecular perspective rather than describing the biological function of the gene unless necessary to contextualize its clinical relevance in cancer. Gene Summaries include relevant cancer subtypes, specific treatments for the gene’s associated variants, pathway interactions, functional alterations caused by the variants in the gene, and normal/abnormal functions of the gene with associated roles in oncogenesis"^^ . - "Terry.Hayamizu@jax.org" . - "PAV is a lightweight ontology for tracking provenance, authorship, and versioning. It specializes the W3C provenance ontology PROV-O in order to describe authorship, curation and digital creation of online resources."^^ . - . - "Mike Tyers" . - "XLYOFNOQVPJJNP-UHFFFAOYSA-N,NBSCHQHZLSJFNQ-GASJEMHNSA-N--%3ENBIIXXVUZAFLBC-UHFFFAOYSA-N,WQZGKKKJIJFFOK-GASJEMHNSA-N"^^ . - "http://www.begdb.com/index.php?action=oneMolecule&state=show&id="^^ . - . - "oio" . - . - . - "http://purl.obolibrary.org/obo/OMIT_"^^ . - "^\\d{5,6}$"^^ . - "Yiming Bao" . - "false"^^ . - . - . - . - "http://purl.obolibrary.org/obo/VSAO_"^^ . - "https://sumlineknowledgebase.com/?page_id=$1"^^ . - . - . - . - "Physiome Model Repository workspace" . - . - . - . - . - "Immune Epitope Database" . - . - . - "https://www.rebuildingakidney.org/id/"^^ . - . - "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada."^^ . - . - "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1"^^ . - . - "nucleotide" . - . - . - . - "false"^^ . - "genomics" . - . - "false"^^ . - . - . - . - . - . - "agriculture" . - "BioGRID" . - "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information."^^ . - . - "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules."^^ . - . - "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information."^^ . - "interaction" . - . - . - "drugcentral" . - "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This is the reference gene model for a given locus."^^ . - . - . - . - . - "ontology" . - "DisProt" . - "bioinformatics" . - "^\\d{7}$"^^ . - "1:rev:309cf2674ee7a0749978cf8265ab91a60aea0f7d"^^ . - "DataONE provides infrastructure facilitating long-term access to scientific research data of relevance to the earth sciences."^^ . + . + "uniref" . + . + . + "vfdb.genus" . + . + "ontology" . + "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae."^^ . + "elisa-kits" . + "DisProt is a database of intrinsically disordered proteins and protein disordered regions, manually curated from literature."^^ . + . + . + . + . + "^[A-Za-z 0-9]+$"^^ . + . + "The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment."^^ . + "ICEberg cis-integrative and mobilizable element" . + . + . + . + . + . + "AT1G73965"^^ . + . + . + . + . + "true"^^ . + "ontology" . + "98034"^^ . + . + "https://www.pesticideinfo.org/chemical/"^^ . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . + "^\\d+\\-\\d+\\-\\d+$"^^ . + . + . + "nlx.res" . + . + . + . + "sabiork.kineticrecord" . + . + . + . + . + "false"^^ . + . + "pubchem.assay" . + "false"^^ . + . + . + _:Na2cd73fcf1ba47599ec8b2a8dd93bcad . + . + . + "hpiwowar@gmail.com" . + . + "false"^^ . + "false"^^ . + . + . + . + "biology" . + . + "1"^^ . + . + "systems biology" . + . + "1.10.10.200"^^ . + . + . + "anatomy" . + . + . + "0000038"^^ . + . + "ontology" . + . + . + . + . + . + . + . + . + "protozoan" . + . + . + . + . + . + . + . + . + "AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System was designed to organize and distribute genomic data and annotations for a large international community. This collection references the transcript report, which describes genomic location, sequence and exon information."^^ . + . + . + . + . + . + . + "0000006"^^ . + "chemistry" . + . + . + . + . + "NMR Restraints Grid" . + "plant breeding" . + . + . + "MIMPS" . + . + "obo" . + "^\\d+$"^^ . + "https://ocid.ontochem.com/prefname?ocid=$1"^^ . + . + "Abcam" . + . + . + "https://bioregistry.io/lgic:"^^ . + . + . + "PhosphoSite Site Group" . + "stock" . + . + . + "false"^^ . + "^\\d+$"^^ . + . + "^\\d{8}$"^^ . + . + "https://bioregistry.io/pocketome:"^^ . + "The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records in order to obtain complete coverage of the sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view."^^ . + . + . + "https://civicdb.org/links/molecular_profile/$1"^^ . + . + "http://umbbd.ethz.ch/servlets/pageservlet?ptype=p&pathway_abbr="^^ . + "The miRBase Sequence Database is a searchable database of published miRNA sequences and annotation. This collection refers specifically to the mature miRNA sequence."^^ . + "false"^^ . + . + . + . + . + "developmental biology" . + . + . + . + . + . + "https://www.inaturalist.org/taxa/"^^ . + "behavior" . + "^[A-Z0-9]{5}\\d+$"^^ . + . + . + . + "https://www.genedb.org/gene/"^^ . + . + . + "plasmodb" . + "Sciflection" . + "http://aber-owl.net/ontology/$1" . + . + . + "immunology" . + "https://cropontology.org/rdf/CO_340:$1"^^ . + "http://data.food.gov.uk/codes/foodtype/id/"^^ . + . + . + . + . + . + . + "Image Data Resource (IDR) is an online, public data repository that seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image\" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools."^^ . + "https://rnaloops.cs.put.poznan.pl/search/details/"^^ . + . + . + . + "structure" . + "false"^^ . + "A structured controlled vocabulary of stage-specific anatomical structures of the developing human."^^ . + . + . + "plant" . + "ontology" . + . + "DataCollection"^^ . + "movie" . + . + . + . + . + . + "https://www.cellbiolabs.com/search?keywords="^^ . + . + "http://purl.obolibrary.org/obo/SEPIO_$1"^^ . + "ec-code" . + "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw, 2D electron microscopy images. Here, you can browse, upload and download the raw images used to build a 3D structure"^^ . + "https://www.uniprot.org/diseases/"^^ . + . + . + "Internet Engineering Task Force Language Tag" . + . + . + . + "Alliance of Genome Resources Knowledge Base" . + . + "^[WAICV]\\d{2,}$"^^ . + . + . + "https://www.phenxtoolkit.org/protocols/view/$1"^^ . + "ICDCM_2005" . + "false"^^ . + "https://www.rrrc.us/Strain/?x=$1"^^ . + . + "aceview.worm" . + . + . + . + . + . + "https://www.clinicaltrials.gov/study/$1"^^ . + "life science" . + . + "http://metlin.scripps.edu/metabo_info.php?molid="^^ . + . + . + "panther.pathway" . + . + . + "protein" . + "Disease Class" . + . + "https://cropontology.org/rdf/CO_345:$1"^^ . + "software engineering" . + . + . + "http://purl.obolibrary.org/obo/VIDO_$1"^^ . + "https://sed-ml.org/urns.html#language:"^^ . + . + "chemical in the database supplied by National Oceanic and Atmospheric Administration"^^ . + . + "false"^^ . + . + . + "GeoNames Feature Code" . + "Metabolic Atlas" . + . + . + . + . + . + . + . + "oae" . + . + . + "fortuna@ebd.csic.es" . + . + "Mouse gross anatomy and development, timed" . + "http://www.molmovdb.org/cgi-bin/morph.cgi?ID="^^ . + "2d-page" . + "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc="^^ . + . + . +_:Ne20487b8cfc54ee38941aca52616a216 "pierre.sprumont@unifr.ch" . + . + . + "U49845"^^ . + "David.Linke@catalysis.de" . + "An ontology that allows the description of numerical and categorical bibliometric data (e.g., journal impact factor, author h-index, categories describing research careers) in RDF."^^ . + . + "false"^^ . + . + . + "classification" . + . + "DARC (Database of Aligned Ribosomal Complexes) stores available cryo-EM (electron microscopy) data and atomic coordinates of ribosomal particles from the PDB, which are aligned within a common coordinate system. The aligned coordinate system simplifies direct visualization of conformational changes in the ribosome, such as subunit rotation and head-swiveling, as well as direct comparison of bound ligands, such as antibiotics or translation factors."^^ . + . + "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:$1"^^ . + . + . + "http://swissregulon.unibas.ch/query/"^^ . + . + "miaa" . + . + "bioregistry"^^ . + . + . + "http://purl.obolibrary.org/obo/OBA_$1"^^ . + . + . + . + "The Terminologia Embryologica (TE) is a standardized list of words used in the description of human embryologic and fetal structures. It was produced by the Federative International Committee on Anatomical Terminology on behalf of the International Federation of Associations of Anatomists and posted on the Internet since 2010. [wikipedia]"^^ . + . + "knapsack" . + . + "0000106"^^ . + "false"^^ . + . + "Kaggle" . + . + . + . + . + . + . + . + "^(\\w+)?\\d+$"^^ . + . + "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences."^^ . + "^ENSG\\d{11}$"^^ . + "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID="^^ . + . "Cell line databases/resources"^^ . - . - "ontology" . - . - . - . - "^\\d+$"^^ . - . - . - . - . - "00000674"^^ . - . - . - "NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing."^^ . - "dna" . - . - . - . - "obo" . - . - . - . - "BEI_Resources" . - . - . - "translational medicine" . - . - . - . - . - . - . - "false"^^ . - "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1"^^ . - . + "https://drs.microbiomedata.org/objects/$1"^^ . + . + . + . + . + . + . + "Analyses of microbiome data within MGnify"^^ . + . + "https://bioregistry.io/ipi:"^^ . + "Chemical Methods Ontology" . + "dsm4" . + "HUGO Gene Nomenclature Committee" . + "dc11" . + . + . + "false"^^ . + . + . + . + . + "botany" . + "^[1-9]\\d*$"^^ . + . + "Bibliometric Data Ontology" . + . + . + . + . + "ontology" . + . + "^\\d+\\.\\d+$"^^ . + . + . + . + . + . + "NCI Metathesaurus" . + . + "022586"^^ . + . + . + "LG Chemical Entity Detection Dataset (LGCEDe)" . + . + "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id="^^ . + . + . + "A subspace of Metabolic Atlas for reactions."^^ . + . + . + "The subcellular locations in which a protein is found are described in UniProtKB entries with a controlled vocabulary, which includes also membrane topology and orientation terms."^^ . + "ontology" . + "data science" . + "https://www.kegg.jp/entry/"^^ . + . + . + "has URI prefix" . + . + "co_321" . + . + . + . + "false"^^ . + "^\\d+$"^^ . + "medical biotechnology" . + . + . + "ontology" . + . + . + . + . + . + . + "drosophila" . + "scholia.resource" . + "life science" . + . + "^\\d+$"^^ . + . + . + . + "http://purl.obolibrary.org/obo/PW_"^^ . + "An online database of inorganic compounds, MolBase was constructed by Dr Mark Winter of the University of Sheffield with input from undergraduate students."^^ . + . + "tao" . + "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0="^^ . + . + . + . + "proteomics" . + . + . + "RepeatsDB Structure" . + . + . + "supply" . + . + . + . + . + . + . + "https://hl7.org/fhir/us/"^^ . + . + . + . + . + "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id="^^ . + . + "Data format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . + . + . + . + "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view."^^ . + . + . + . + "^[a-zA-Z0-9\\-:#\\.]+$"^^ . + "ontology" . + . + "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$"^^ . + "International Classification of Diseases, 9th Revision" . + . + "PubChem Substance ID (SID)" . + . + . + . + . + . + . + . + "Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis. It contains genomic, development data and community information for Xenopus research. it includes gene expression patterns that incorporates image data from the literature, large scale screens and community submissions."^^ . + . + "data management" . + "0032571"^^ . + . + "skip" . + . + "Ctibor Škuta" . + . + "^TB[1,2]?:[A-Z][a-z]?\\d+$"^^ . + . + "fish" . + "Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse" . + . + . + . + . + . + "life science" . + . + "Open Data for Access and Mining" . + . + . + . + . + . + . + "ygob" . + . + . + . + . + "Adriano Rutz" . + . + . + . + "nucleotide" . + . + . + . + "latitude"^^ . + . + . + "4238"^^ . + . + . + "obo" . + . + "chemical" . + "LINCS Cell" . + "http://xmlns.com/foaf/0.1/"^^ . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + . + "life science" . + . + "LinkML" . + "https://ecocyc.org/gene?id="^^ . + "https://scicrunch.org/resolver/RRID:"^^ . + . + . + "obo" . + . + "false"^^ . + "preclinical studies" . +_:N2a6598dcac82449284e147289aeb0d56 "helpdesk@cropontology-curationtool.org" . + "img.taxon" . + "mirbase.mature" . + "co_337" . + . + . + . + . + . + . + "biomedical science" . + "http://virtualflybrain.org/reports/$1"^^ . + "hsa-let-7a-2-3p"^^ . + . + . + "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$"^^ . + . + . + . + . + . + . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/NOMEN_$1"^^ . + . + . + . + . + . + "PubMed Central" . + . + . + . + "Medaka Developmental Stages" . + . + . + . + . + . + "genome" . + "https://sitem.herts.ac.uk/aeru/vsdb/Reports/$1.htm"^^ . + . + "^\\d{7}$"^^ . + . + "https://rfam.xfam.org/family/$1"^^ . + "This document is an up-to-date specification of all metadata terms maintained by the Dublin Core Metadata Initiative, including properties, vocabulary encoding schemes, syntax encoding schemes, and classes."^^ . + . + . + . + . + . + . + "preclinical studies" . + "Tanja Bekhuis" . + . + "David Craik" . + "http://www.ecogene.org/gene/"^^ . + . + "obo" . + "https://bioregistry.io/medlineplus:"^^ . + . + "biology" . + "sov:WRfXPg8dantKVubE3HX8pw"^^ . + . + . + . + . + "zhu@iastate.edu" . + . +_:N1bbada1527ec4d42b30fec1f0ff0bdb1 "Hajo Rijgersberg" . + . + . + "https://semanticscience.org/resource/CHEMINF_$1" . + "The cell line vocabulary inside FlyBase"^^ . + . + "microbial" . + "AberOWL" . + "true"^^ . + . + . + "1000000"^^ . + "lipid" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ORNASEQ_"^^ . + . + . + "^\\S+$"^^ . + . + "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . + "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization."^^ . + "biology" . + "vipr" . + . + "^\\w+(\\.)?(\\d+)?$"^^ . + "ontology" . + . + . + . + . + "Computational Chemistry Ontology" . + . + . + "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."^^ . + . + . + . + "ST000900"^^ . + . + . + . + "Laurel Cooper" . + "^G(PL|SM|SE|DS)\\d+$"^^ . + "genetics" . + . + "http://data.europa.eu/89h/"^^ . + . + . + "https://neurovault.org/collections/$1"^^ . + . + . + . + . + "cameo" . + "biomedical science" . + "http://purl.obolibrary.org/obo/FOODON_"^^ . + . + "PPDB is a comprehensive source of data on pesticide chemical, physical and biological properties. "^^ . + "cell biology" . + . + "life science" . + "genome" . + . + . + "^\\d+$"^^ . + "A controlled vocabulary to support the study of transcription in the primate brain"^^ . + . + . + "DCAT is an RDF vocabulary designed to facilitate interoperability between data catalogs published on the Web"^^ . + . + . + "http://purl.obolibrary.org/obo/MCRO_$1"^^ . + . + . + "000000159"^^ . + . + . + . + . + . + "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."^^ . + "mba" . + . + "http://www.w3.org/ns/dcat#$1"^^ . + "gaz" . + . + "Search Tool for Retrieval of Interacting Genes/Proteins" . + . + "HDAA2" . + . + . + "scicrunch" . + . + . + "false"^^ . + . + . + . + . + . + "GrassBase" . + . + "affy.probeset" . + . + . + . + "200282"^^ . + . + "dsm5" . + . + . + "http://purl.obolibrary.org/obo/REX_"^^ . + "http://www.iclc.it/details/det_list.php?line_id=$1"^^ . + . + "Frederic Bastian" . + . + "identifier for an organisation in author affiliations per Scopus"^^ . + "^(GT|GH|PL|CE|CBM)\\d+(\\_\\d+)?$"^^ . + "Jason E. Stajich" . + . + "0001927"^^ . + . + "jgraybeal@stanford.edu" . + "bugbase.protocol" . + "https://molmedb.upol.cz/mol/$1"^^ . + . + . + "appears in" . + "activityBoundOf"^^ . + . + "Conserved Domain Database at NCBI" . + "^SMP\\d+$"^^ . + "true"^^ . + "^\\w+$"^^ . + . + "false"^^ . + . + . + "NCBI Genome" . + "false"^^ . + "https://www.ncbi.nlm.nih.gov/sra/$1"^^ . + . + . + . + "lspci" . + "Aquatic Sciences and Fisheries Information System" . + "flybase" . + . + . + . + . +_:Nb666dc69b4614275bdcddecad7d0f15a "Vivian Lee" . + . + "false"^^ . + . + "^\\d{4}$"^^ . + _:Na0f17686c21a4cc9adb495d45d340149 . + . + . + "LDS-1110"^^ . + "Database of experimentally verified IRES structures" . + . + "DIP-743N"^^ . + . + "A nomenclatural ontology for biological names" . + . + . + "LinJ.20.0070"^^ . + "dictyBase" . + "false"^^ . + "vertebrate" . + . + "hilmar.lapp@duke.edu" . + "upheno" . + "https://github.com/"^^ . + "IPI"^^ . + . + "maizegdb.locus" . + "atol" . + . + . + "pmp" . + . + . +_:Nd8046430bd4b45a48b58926eac75104a "Crop Ontology Helpdesk" . + "Platynereis stage ontology" . + . + . + . + . + . + . + . + "ontology" . + . + "false"^^ . + . + . + . + "ncbi.genome" . + "The Clinical Research Information Service (CRIS) is a non-profit online registration system for clinical trials (researches) to be conducted in Korea. It has been established at the Korea Disease Control and Prevention Agency (KDCA) with support from the Ministry of Health and Welfare (MOHW). It joined the WHO International Clinical Trials Registry Platform (ICTRP) as 11th member of Primary Registry. (from about page)\nNote that the web page that resolves this trial does not correspond to the semantic space"^^ . + . + . + "LTS0004651"^^ . + . + "http://bcrj.org.br/celula/"^^ . + . + . + . + . + . + . + . + . + "Biological Spatial Ontology" . + "gene" . + . + . + . + "13"^^ . + . + . + . + "SMID-DB" . + . + "UniProtKB-SubCell" . + "model organism database" . + "biomedical science" . + . + "oceanography" . + "sh" . + . + "Kerafast cell lines" . + "DisProt is a database of intrisically disordered proteins and protein disordered regions, manually curated from literature."^^ . + . + "46946"^^ . + "Disease Drivers Ontology" . + "biosamples" . + "0024"^^ . + "biomagresbank" . + . + . + . + "Identifier of an object from the ASTD database."^^ . + . + "life science" . + . + . + . + . + . + "life science" . + "MESHA" . + "marine biology" . + "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$"^^ . + "genes" . + . + "A0001"^^ . +_:Nd11f509979d24a498e9719a49b64bac0 "Patricia Brooks" . + "^\\d+$"^^ . + . + . + . + "bibliography" . + . + . + "life science" . + . + . + . + . + . + . + . + . + "pathway" . + . + . + . + . + "false"^^ . + "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + "491187"^^ . + "http://www.hmdb.ca/metabolites/"^^ . + "patent" . + "clinical decision support systems" . . - . - . - . - "0032571"^^ . - "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/"^^ . - . + "casent0106247"^^ . + . + . + . + "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family="^^ . + . + "^EB\\d+$"^^ . + "http://purl.obolibrary.org/obo/GENO_$1"^^ . + "^\\w+$"^^ . + . + . + . + "pancreatic islet function" . + . + . + "^\\d+$"^^ . + . + . + "UPLOC" . + "493771"^^ . + . + "damion_dooley@sfu.ca" . + . + . + . + . + . + . + . + "Registry" . + . + "ECOCYC" . + "taxonomy" . + . + . . - . - . - . - . - . - . - . - "A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON."^^ . - "An ontology developed by the American Psychological Association (APA). Note that URIs in this ontology appear to have been generated with erroneous settings in Protege."^^ . - . - "https://www.nextprot.org/term/$1"^^ . - "biomedical science" . - . - . - "false"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - "mouse" . - "The SEED;" . - . - . - . - . - . - "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information."^^ . - "RiceNetDB Reaction" . - . - . - "98"^^ . - . - . - "HMS-LINCS" . - . - . + "http://purl.obolibrary.org/obo/ONTONEO_"^^ . + . + . + "anatomy" . + . + . + . + . + . + . + . + . + "obo" . + . + . + "The 10th revision of the International Classification of Diseases (ICD) issued by the World Health Organization (WHO). ICD is formally named 'The International Statistical Classification of Diseases and Related Health Problems'. It contains codes for diseases, signs and symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or diseases.\n\nNote that the WHO version of ICD-10 is distinct from the ICD-10-CM (Clinical Modification) issued by the U.S. National Center for Health Statistics for use in the United States."^^ . + . + "ontology" . + "void" . + "protein" . + . + "genomics" . + . + . + "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id="^^ . + "ontology" . + . + . + "NCI_Thesaurus" . + . + . + . + "PaxDb Organism" . + "fbrf" . + . + "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species=$1"^^ . + . + . + . + "biomedical science" . + "ontology" . + . + . + . + "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + . + "Q9P0K8"^^ . + . + . "life science" . - . - . - . + "protein" . . - . - . - . - . - . - . - . - . - . - . - "https://n2t.net/$1:$2" . - . - . - . - "SNP2TFBS is aimed at studying variations (SNPs/indels) that affect transcription factor binding (TFB) in the Human genome."^^ . - . - . - . - "^\\d{8}$"^^ . - "tissue" . - . - "botany" . - . - . - . - "gene expression" . - _:Nf22035a46e7c43d2b632a2ab5a697c5e . - . - "neurobiology" . - . - "Process Chemistry Ontology" . - . - "https://aopwiki.org/aops/$1"^^ . - . - "http://search.sisuproject.fi/#/variant/$1"^^ . - "^\\d{7}$"^^ . - . - . - . - "false"^^ . - . - "NCBI Protein" . - . - "false"^^ . - "http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi?species="^^ . - . - . - . - "CorrDB" . - . - "false"^^ . - "PA146123006"^^ . - "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information."^^ . - "200-003-9"^^ . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"^^ . - "WB_REF" . - . - "^\\d{7}$"^^ . - . - "protein" . - "structure" . - "https://www.cropontology.org" . - . - . - . - "https://www.arabidopsis.org/servlets/TairObject?type=locus&name=$1"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1"^^ . - . - "ontology" . - "UniProt Variants" . - "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id="^^ . - . - "1-55516888-G-GA"^^ . - . - . - "http://www.crop2ml.org/cropmdb/"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/OGG_$1"^^ . - "omid" . - . - . - . - . - "http://www.proteinatlas.org/"^^ . - "false"^^ . - . - "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . - "jcggdb" . - "loqate" . - "https://nsrrc.missouri.edu/nsrrc$1info/"^^ . - . - "omics" . - . - "ExAC Gene" . - . - "An experimental run, served thrugh the ENA"^^ . - "137"^^ . - . - "ontology" . - . - . - . - "http://geneontology.org/" . - . - "life science" . - . - . - "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO)."^^ . - . - . - . - . - "^\\d+$"^^ . - "toxicology" . - "http://purl.org/linked-data/cube#"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - "interaction" . - "false"^^ . - "structure" . - "http://www.conoserver.org/?page=card&table=protein&id="^^ . - . - . - "life science" . - . - . - "false"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - "ontology" . - "dc_cl" . - "Protein Model Portal" . - . - "http://www.kegg.jp/entry/"^^ . - . - . - "^\\S+$"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/OMP_"^^ . - "pathway" . - . - "M0001"^^ . - " A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1."^^ . - . - . - "http://id.nlm.nih.gov/mesh/vocab#"^^ . - . - . - . - "biomedical science" . - . - "Daniel Himmelstein" . -_:N0ae28fac82dc472a8eae124a719e75e4 "SEP developers via the PSI and MSI mailing lists" . - . - "true"^^ . - "life science" . - . - "https://www.ebi.ac.uk/interpro/genomeproperties/#$1"^^ . - "structural biochemistry" . - "quality" . - . - "^(c|k)\\d{7}$"^^ . - . - "C12345"^^ . - . - . - . - . - . - "^AT\\d+$"^^ . - "false"^^ . - . - "PF11779"^^ . - . - "Asiyah Yu Lin" . - . - . - "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties."^^ . - . - . - . - . - "life science" . - . - . - . - . - . - . - "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes."^^ . - . - . - "https://lincs.hms.harvard.edu/db/sm/$1"^^ . - "Bgee family" . - . - . - . - . - "http://w3id.org/owlstar/$1"^^ . - . - . - "ChemDB" . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "Plant Trait Ontology" . - "^\\d{7}$"^^ . - "https://web.expasy.org/abcd/ABCD_"^^ . - . - . - "ontology" . - . - "h_aktPathway"^^ . - . - . - . - . - "ontology" . - . - . - . - . - "Allyson Lister" . - "isni" . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1"^^ . - . - "ontology" . - . - . - . - . - . - . - "CTD Gene" . - "1-FEH+w3"^^ . - . - "luana.licata@gmail.com" . - . - "GWAS Central Phenotype" . - . - . - "https://www.genome.jp/virushostdb/"^^ . - "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id="^^ . - . - . - "obo" . - . - . - . - "small molecule" . - "LG Chemical Entity Detection Dataset (LGCEDe) is only available open-dataset with molecular instance level annotations (i.e. atom-bond level position annotations within an image) for molecular structure images. This dataset was designed to encourage research on detection-based pipelines for Optical Chemical Structure Recognition (OCSR)."^^ . - . - "deletion" . - . - . - "false"^^ . - "obo" . - "HGNC_GROUP" . - . - "false"^^ . - "D001151"^^ . - . - "proteomics" . - . - . - "paxdb.protein" . - . - "Human Induced Pluripotent Stem Cells Initiative" . - . - . - . - . - . - . - . - "Bitbucket is a Git-based source code repository hosting service owned by Atlassian."^^ . - "NCI" . - . - . - "https://bioregistry.io/go.rule:"^^ . - . - . - "false"^^ . - "false"^^ . - . - . - "nbrc" . - "false"^^ . - . - . - . - "true"^^ . - "pazar" . - "humanities" . - . - . - . - "GeneCards" . - "druzinsk@uic.edu" . - . - . - . - . - "subject" . - "clinical LABoratory Ontology" . - "kegg_genome" . - . - . - . - . - . - . - "botany" . - . - . - "http://purl.obolibrary.org/obo/CTENO_$1"^^ . - . - "mutant mouse strain" . - "^\\d+$"^^ . - . - "bigg.compartment" . - . - . - . - "genecards.geneannot" . - "bioinformatics" . - "493771"^^ . - "^\\d{7}$"^^ . - . - . - . - "rna" . - . - . - "Soybean ontology" . - . - "interaction" . - . - . - "GeoNames" . - . - . - "http://thebiogrid.org/"^^ . - . - . - "The Ontology of Adverse Eventsy (OAE) is a biomedical ontology in the domain of adverse events. OAE aims to standardize adverse event annotation, integrate various adverse event data, and support computer-assisted reasoning. OAE is a community-based ontology. Its development follows the OBO Foundry principles. Vaccine adverse events have been used as an initial testing use case. OAE also studies adverse events associated with the administration of drug and nutritional products, the operation of surgeries, and the usage of medical devices, etc."^^ . - "pubchem_id" . - . - . - . - . - . - . - . - . - "pharmacogenomics" . - . - . - . - "false"^^ . - "Human Oral Microbiome Database" . - . - "https://bioregistry.io/odor:"^^ . - . - . - "^HIT\\d{9}(\\.\\d+)?$"^^ . - . - "GOLD metadata" . - . - "0000029"^^ . - . - . - . - . - . - . - . - . - "carrine.blank@umontana.edu" . - "obo" . - . - "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species."^^ . - "microbiology" . - . - . - . - . - "sharkipedia.species" . - . - . - . - "pseudomonas" . - . - . - "cdpd" . - . - . - "mouse" . - . - "Rudolf T. Pillich" . - . + . + . + "Agronomy Vocabulary" . + "false"^^ . + "AceView provides a curated sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These are aligned on the genome and clustered into a minimal number of alternative transcript variants and grouped into genes. In addition, alternative features such as promoters, and expression in tissues is recorded. This collection references C. elegans genes and expression."^^ . + "^ECMDB\\d+$"^^ . + . + . + "http://purl.obolibrary.org/obo/SEP_$1"^^ . + "00000000"^^ . + "genomics" . + . + "http://multicellds.org/MultiCellDB/$1"^^ . + . + . + . + "arxiv" . + . + "anatomy" . + . + . + . + . + . + . + . + . + "false"^^ . + . + "fbbi" . + . + "true"^^ . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix)."^^ . + . + . + "100810"^^ . + "http://www.phosphosite.org/proteinAction.do?id=$1"^^ . + "NLXANAT covers anatomy terms. Almost all terms are also in Uberon."^^ . + . + . + . + "^\\d{7}$"^^ . + . + . + "https://bioregistry.io/geonames.feature:"^^ . + . + . + . + . + . + "clinical studies" . + . + . + "genomics" . + . + . + . + . + "https://www.uniprot.org/arba/$1"^^ . + . + "100000001"^^ . + "false"^^ . + . + . + . + "KEGG Module" . + . + . + "meddra" . + . + "dna" . + "https://mediadive.dsmz.de/medium/$1"^^ . + . + . + "biodiversity" . + . + . + . + . + "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition."^^ . + . + . +_:N3830f9a7c24d4ca0a42acc9fe0c217a9 "Intellectual.PropertyServices@ama-assn.org" . + . + . + . + . + "http://cbg.garvan.unsw.edu.au/pina/interactome.oneP.do?showExtend=null&ac="^^ . + "ontology" . + . + "e0333"^^ . + "geogeo" . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=$1"^^ . + . + "biomedical science" . + . + . + "MarFun" . + . + "obo" . + "false"^^ . + . + . + . + . + "http://www.noncode.org/NONCODERv3/ncrna.php?ncid="^^ . + . + "Name-to-Thing" . + . + . + . + . + "Nematode Expression Pattern DataBase" . + . + . + . . - "structure" . - . - "^\\d{7}$"^^ . - "Human Disease Ontology" . - . - . - "ncbitaxon" . - . - . - . - "ontology" . - . - "Database of Genomic Structural Variation - Variant" . - . - . - . - "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=$1"^^ . - . - "bioinformatics" . - "life science" . - . - "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families."^^ . - . - "bioregistry.registry" . - "image collection" . - . - . - "ontology" . - . - . - "movie" . - . - . - "The Yeast Transcription Factor Specificity Compendium (YeTFasCO) is a database of transcription factor specificities for the yeast Saccharomyces cerevisiae in Position Frequency Matrix (PFM) or Position Weight Matrix (PWM) formats."^^ . - . - . - "00000001"^^ . - "^\\d{7}$"^^ . - . - "false"^^ . - "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . - . - . - . - "Functional Requirements for Bibliographic Records Entity-Relationship Model" . - "pmr" . - . - . - . - . - . - "insdc.gcf" . - . - . - "http://purl.obolibrary.org/obo/EHDA_"^^ . - . - . - . - . - . - . - "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work."^^ . - "lectins/172"^^ . - . - . - . - "agrovoc" . - . - . - . - "false"^^ . - "false"^^ . - "Cowpea ontology" . - "true"^^ . - . - . - . - "https://amoebadb.org/amoeba/app/record/gene/"^^ . - . - . - . - "^\\d{7}$"^^ . - . - "ghr" . - . - . - . - . - . - . - . - . - . - "virology" . - "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It published genome-scale metabolic networks into a single database with a set of standardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual metabolites."^^ . - "microbial" . - . - . - "goccid" . - . - . - . - . - "https://bioregistry.io/tkg:"^^ . - "egon.willighagen@maastrichtuniversity.nl" . - . - . - . - "http://www.onto-med.de/ontologies/gfo.owl#$1"^^ . - "cpga" . - . - . - . - . - . - "https://www.inaturalist.org/taxa/$1"^^ . - . - . - . - "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf"^^ . - . - . - . - "002678"^^ . - . - "http://ddinter.scbdd.com/ddinter/drug-detail/"^^ . - "Bloomington Drosophila Stock Center" . - . - . - "1009107926"^^ . - . - "CORDIS Article" . - . - . - . - "pierre.grenon@ifomis.uni-saarland.de" . - . - . - "KEGG_REACTION" . - . - . - "Crystallographic Information Framework" . - . - "yperez@ebi.ac.uk" . - . - "loggerhead" . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . - . - "false"^^ . - . - . - . - . - . - "embryonic stem cell line" . - "false"^^ . - . - . - . - "chemistry" . - "medgen" . - . - . - . - . - . - . - . - . - "false"^^ . - . - "medicine" . - . - . - "http://purl.obolibrary.org/obo/INO_$1"^^ . - . - . - "https://depmap.org/portal/cell_line/"^^ . - . - . - "Database of protein-protein complexes" . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "2555646"^^ . - . - "Omar Harb" . - "P0DP23"^^ . - "mathematics" . - . - . - "http://tuberculist.epfl.ch/quicksearch.php?gene+name="^^ . - . - . - . - "https://mediadive.dsmz.de/solutions/"^^ . - . - . + . + . + "AOPWiki (Stressor)" . + . + "false"^^ . + "https://fairsharing.org/$1" . + . + . + "uspto" . + . + . + "depod" . + . + . + "http://ciliate.org/index.php/feature/details/$1"^^ . + . + . + "Beta Cell Genomics Ontology" . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_res_"^^ . + "protein" . + "^\\d{7}$"^^ . + "chembl" . + . + . + "Homologous Vertebrate Genes Database" . + . + "Enzyme Commission Code" . + . + . + "development" . + . + "^DP\\d{5}r\\d{3}$"^^ . + "^M\\d+$"^^ . + "preclinical studies" . + . + . + "gene" . + . + "International Protein Index" . + . + . + "The ISRCTN registry is a primary clinical trial registry recognised by WHO and ICMJE that accepts all clinical research studies (whether proposed, ongoing or completed), providing content validation and curation and the unique identification number necessary for publication. All study records in the database are freely accessible and searchable. (from homepage)"^^ . + . + . + . + "nutritional science" . + . + . + . + . + . + "false"^^ . + . + "https://www.nextprot.org/term/"^^ . + . + . + . + "interpro" . + "dna" . + "^\\w+$"^^ . + . + "^\\d+$"^^ . + . + "pubchem.classification" . + "rdf" . + . + . + . + "false"^^ . + . + "https://dgrc.bio.indiana.edu/product/View?product="^^ . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . + . + "EAWAG Biocatalysis/Biodegradation Database" . + . + . + . + . + . + . + . + . + . + . + "NIF Standard Ontology: Digital Resources" . +_:N26c0c05c822d47a285ae363ae8b52b83 "ted@tklein.com" . + . + . + . + "ontology" . + "MTBLS1"^^ . + "SCTID" . + . + "Common Core Ontologies" . + . + "ontology" . + . + "false"^^ . + . + "ProtoNet ProteinCard" . + "FuncBase Yeast" . + . + . + . + "^Gm\\d+$"^^ . + . + . + . + . + . + . + . + . + . + . + "0004"^^ . + "life science" . + . + . + . + . + . + . "life science" . - . - "0000001"^^ . - . - "^\\d{7}$"^^ . - . - . - . - "molecular biology" . - "oclc" . - . - . - . - . - "TGME49_053730"^^ . - . - . - "false"^^ . - . - . - "hl7.v3codesystem" . - "false"^^ . - . - . - . - . - . - . - . - "biozil" . - . - . - . - . - "https://registry.identifiers.org/registry/"^^ . - . - . - . - "http://purl.obolibrary.org/obo/WBbt_$1"^^ . - . - . - . - . - . - . - . - . - . - "life science" . - . - . - . - "rat model" . - . - "veterinary medicine" . - . - . - . - . - . - . - . - . - "database management" . - "isanchez@cnb.csic.es" . - "structural biology" . - . - . - "^\\d+$"^^ . - . - . - "00030692-0FE1-4A1B-955E-A2E55D659267"^^ . - "http://genomics.senescence.info/diet/details.php?id="^^ . - "vaccines" . - "ontology" . - "http://www.chemspider.com/inchikey="^^ . - . - . - "https://www.ncbi.nlm.nih.gov/dbvar/studies/"^^ . - . - "ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters."^^ . - . - . - "OGG is a biological ontology in the area of genes and genomes. OGG uses the Basic Formal Ontology (BFO) as its upper level ontology. This OGG document contains the genes and genomes of a list of selected organisms, including human, two viruses (HIV and influenza virus), and bacteria (B. melitensis strain 16M, E. coli strain K-12 substrain MG1655, M. tuberculosis strain H37Rv, and P. aeruginosa strain PAO1). More OGG information for other organisms (e.g., mouse, zebrafish, fruit fly, yeast, etc.) may be found in other OGG subsets."^^ . - . - . - "ontology" . - . - "developmental biology" . - . - "^PS\\d{5}$"^^ . + . + . + . + . + . + . + . + . + "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene="^^ . + . + . + . + "Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business."^^ . + . + "ipi" . + . + . + . + . + "MPATH" . + "^\\d+$"^^ . + . + . + "Berkeley Drosophila Genome Project EST database" . + . + "https://bioregistry.io/genpept:"^^ . + "false"^^ . + . + . + . + "InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences."^^ . + "true"^^ . + "http://purl.obolibrary.org/obo/ICO_"^^ . + "ontology" . + . + "seed.compound" . + "http://kinase.bioinformatics.tw/showall.jsp?type=Kinase&info=Gene&name=$1&drawing=0&sorting=0&kinome=1"^^ . + "Health Canada Natural Product Number" . + "life science" . + . + . + "bootstrep" . + "protein" . + . + . + . + . + "smid" . + "clinical studies" . + . + . "yeastract" . - "^\\d+$"^^ . - "hcpcs" . - . - "genome" . - "false"^^ . + . + . + "CAE46076"^^ . + "A pull request in any public repository on GitHub."^^ . + . + . + "0000123"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + "life science" . + . + . + "https://www.cellosaurus.org/CVCL_"^^ . + . + . + . + . + . + "omo" . + . + "cell biology" . + "http://uri.neuinfo.org/nif/nifstd/birnlex_"^^ . + "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/"^^ . + . + . + . + . + . + "computational biology" . + . + . + . + . + "^\\d+$"^^ . + "http://www.chemspider.com/inchikey="^^ . + "Asiyah Yu Lin" . + "true"^^ . + . + . + "lcsh" . + . + "https://easychair.org/cfp/$1"^^ . + . + . + . +_:Na03b38d0ceb5428ca2af0a10110b77e8 "Crop Ontology Helpdesk" . + "Dublin Core Elements (1.1)" . + "gene" . + . + . + . + "Description of Plant Viruses (DPV) provides information about viruses, viroids and satellites of plants, fungi and protozoa. It provides taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. The database also holds detailed information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene."^^ . + . + . + "statistics" . + . + "false"^^ . + "1251"^^ . + "subject agnostic" . + . + . + . + . + . + "Ensembl Gene" . + "genomics" . + "^\\d+$"^^ . + . + . + "eupath" . + "^\\w+$"^^ . + . + . + . + "taxonomy" . + "false"^^ . + "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT=$1"^^ . + . + "^MTBLS\\d+$"^^ . + "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways."^^ . + . + "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1"^^ . + . + . + . + "Schema.org" . + . + "https://www.cellbiolabs.com/search?keywords=$1"^^ . + . + "Torsten Schwede" . + . + "false"^^ . + . + . + . + . + . + . + . + "5046"^^ . + . + . + . + . + "0000187"^^ . + "kegg.disease" . + "ontology" . + . + "https://euclinicaltrials.eu/app/#/view/"^^ . + "genomics" . + . + "http://www.imgt.org/ligmdb/view?id=$1"^^ . + "pharmacology" . + "Food-Drug interactions automatically extracted from scientific literature"^^ . + "http://metnetonline.org/browse_pathway2.php?pthID=$1"^^ . + . + . + . + . + "biomedical science" . + "pathway" . + "ontology" . + . + . + . + "https://meshb.nlm.nih.gov/record/ui?ui=$1"^^ . + . + . + "The Gene Regulation Ontology (GRO) is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes."^^ . + . + "The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis."^^ . + "Drivers of human diseases including environmental, maternal and social exposures."^^ . + . + . + . + . + . + "ontology" . + . + "David Mendez Lopez" . + "false"^^ . + "0000041"^^ . + . + . + "obo" . + "proteomics" . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/FYPO_"^^ . + _:N24956e04a0274b28aee5d0330adf9db6 . + "https://bioregistry.io/metaregistry/ncbi/$1"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/IAO_"^^ . + . + "haendel@ohsu.edu" . + . + "false"^^ . + . + . + . + "https://icd.codes/icd10cm/"^^ . + "http://lipidbank.jp/cgi-bin/detail.cgi?id=$1"^^ . + "https://disprot.org/"^^ . + "^(cl|tum)\\d+$"^^ . + "http://purl.obolibrary.org/obo/SPD_"^^ . + "vso" . + . + . + "http://purl.obolibrary.org/obo/OBIB_"^^ . + . + "semantic web" . + . + . + . + . + "ontology" . + "false"^^ . + "false"^^ . + . + . + . + . + "MGgn0008978"^^ . + . + "PlasmoDB" . + . + "plant breeding" . + . + "eukaryotic" . + . + "A vocabulary about resources, similar to bioregistry.schema, venn, idot, etc."^^ . + . + "life science" . + . + "^[0-9]+$"^^ . + . + . + "ontology" . + "Ontology for General Medical Science" . + . + "protein" . + . + "hdr" . + . + . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Substance archives chemical substance records."^^ . + . + "ontology" . + "leafsnap" . + . + . + "life science" . + . + "unipathway.pathway" . + . + "bioinformatics" . + . + . + "false"^^ . + . + "Sequence types and features ontology" . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_inv_$1"^^ . + . + . + "SubstrateDB" . + . + "^\\d{7}$"^^ . + "phylogenetics" . + "http://purl.org/spar/doco/$1"^^ . + "http://champ-project.org/images/ontology/cao.owl#CAO_"^^ . + "emap" . + . + . + . + . + . + . + . + "true"^^ . + "bpeters@lji.org" . + . + . + . + "http://opm.phar.umich.edu/protein.php?pdbid=$1"^^ . + "http://www.kegg.jp/entry/$1"^^ . + . + . + . + . + . + . + . + . + "small molecule" . + "BioGRID" . + . + . + . + . + . + . + "pathway" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/RNAO_"^^ . + . + "obo" . + . + . + . + . + "This ontology models classes and relationships describing deep learning networks, their component layers and activation functions, as well as potential biases."^^ . + "cubedb" . + . + . + . + "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=$1"^^ . + . + . + "https://bioregistry.io/phosphopoint.protein:"^^ . + "true"^^ . + . + . + "https://chem.nlm.nih.gov/chemidplus/rn/"^^ . + . + . + "http://purl.obolibrary.org/obo/CDAO_$1"^^ . + . + "false"^^ . + . + "true"^^ . + "false"^^ . + . + . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid="^^ . + . + . + . + . + "090924"^^ . + . + "Jeffrey Grethe" . + "molecular neuroanatomy resource" . + "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families."^^ . + . + . + . + . + . + "NLXBR" . + . + . + . + "rxno" . + "THE1B"^^ . + . + "neurophysiology" . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "life science" . + "https://www.biocatalogue.org/services/$1"^^ . + . + "anatomy" . + "http://purl.obolibrary.org/obo/VariO_"^^ . + . + "NLXCELL" . + . + "PhosphoPoint Phosphoprotein" . + . + "http://jcggdb.jp/idb/jcggdb/$1"^^ . + . + "ontology and terminology" . + "bioinformatics" . "74"^^ . - . - . - . - . - . - "life science" . - . - . - "https://uts.nlm.nih.gov/uts/umls/semantic-network/"^^ . - "ev:E00032"^^ . - "Anita Bandrowski" . - . - "false"^^ . - . - . - "^FB\\w{2}\\d{7}$"^^ . - "false"^^ . - . - . - "A0001"^^ . - . - . - . - "false"^^ . + . + . + . + "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology."^^ . + "false"^^ . + "bitterdb.rec" . + . + "zea" . + "http://scop.berkeley.edu/sid=$1"^^ . + . + . + . + . + . + . + . + "agriculture" . + . + . + "rdb20@pitt.edu" . + . + . + . + "strain" . + . + . + . + "VMH metabolite" . + "17165"^^ . + . + "^D\\d{4}$"^^ . + "csd" . + . + . + . + . + "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . + . + . + . + "Research Resource Identifiers" . + . + . + "adriano.rutz@ik.me" . + "uniprot.resource" . + "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages."^^ . + . + . + "ontology" . + "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories."^^ . + . + . + . + "co_335" . + "epidemiology" . + . + "^\\d{7}$"^^ . + . + . + . + "http://www.bindingdb.org/compact/"^^ . + . + "pathway" . + "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1"^^ . + . + "false"^^ . + . + . + "cadsr" . + "neurobiology" . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + "https://hpscreg.eu/cell-line/$1"^^ . + . + . + . + "assays" . + "ontology" . + "Jingshan Huang" . + . + . + . + . + . + "protein" . + . + "false"^^ . + . + . + "false"^^ . + . + . + "http://bcrj.org.br/celula/$1"^^ . + . + . + "ratmap" . + . + . + "Terry.Hayamizu@jax.org" . + "2afacf00-9a1d-4d80-8c32-69d3923d3913"^^ . + "Fossilworks Taxon" . + "embryo" . + "https://sorgerlab.github.io/famplex/$1"^^ . + . + "life science" . + "http://www.tcdb.org/search/result.php?tc=$1"^^ . + . + . + . + "Georgeta Bordea" . + . + . + . + "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam="^^ . + "Small Molecule Pathway Database" . + "anatomy" . + "false"^^ . + "false"^^ . + "developmental biology" . + . + . + "life science" . + . + . + "sabiork.ec" . + "The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can"^^ . + . + . + . + . + "false"^^ . + "csv"^^ . + . + . + . + "RAP-DB Locus" . + "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."^^ . + "https://rism.online/$1"^^ . + . + . + . + "Martin Kuiper" . + "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species."^^ . + "^\\d+$"^^ . + "37af84f2-bfd7-4653-b608-eaff44febba6"^^ . + . + "Saccharomyces genome database pathways" . + "false"^^ . + . + "ccds" . + . + . + . + "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . + . + . + . + "^E(S|D)i\\d+-\\w$"^^ . + . + "ontology" . + . + . + . + . + . + . + "ontology" . + . + "false"^^ . + "Paul Fabry" . + . + "helpdesk@cropontology-curationtool.org" . + . + "BitterDB is a database of compounds reported to taste bitter to humans. The compounds can be searched by name, chemical structure, similarity to other bitter compounds, association with a particular human bitter taste receptor, and so on. The database also contains information on mutations in bitter taste receptors that were shown to influence receptor activation by bitter compounds. The aim of BitterDB is to facilitate studying the chemical features associated with bitterness. This collection references compounds."^^ . + . + "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA."^^ . + "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/$1"^^ . + "false"^^ . + . + "false"^^ . + "biology" . + "cbioportal" . + "bernd.mueller@zbmed.de" . + . + . + . + "https://gold.jgi.doe.gov/resolver?id=$1"^^ . + . + . + . + "Yiming Bao" . + . + . +_:N5f89f946900e4eebb0589865b407f817 "Ramesh Verna" . + "589462"^^ . + "http://www.genome.jp/dbget-bin/www_bget?ec:"^^ . + . + . + "^\\d{7}$"^^ . + "uniprot" . + . + "^\\d+$"^^ . + . + . + . + . + "Gene Ontology Registry" . + . + . + "chemistry" . + . + . + . + . + . + "info@casrai.org" . + . + . + . + . + . + "http://sweetontology.net/matrMineral/"^^ . + . + . + . + . + . +_:N717444d80a984999b81a04f5f075fef5 "fred@fgiasson.com" . + "HMS LINCS Compound" . + . + . + . + . + "false"^^ . + . + . + "http://purl.obolibrary.org/obo/IPR_$1"^^ . + "false"^^ . + . + "Al Kikhney" . + "http://purl.obolibrary.org/obo/MIAPA_"^^ . + . + . + . + . + . + "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."^^ . + "zinc" . + "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$"^^ . + . + "http://www.alzgene.org/geneoverview.asp?geneid="^^ . + "^\\d+$"^^ . + . + . + . + . + "hms.lincs.compound" . + "false"^^ . + "^([A-Z]+)?\\d+(\\.\\d+)?$"^^ . + . + . + "plant" . + "false"^^ . + "^PRJ[DEN][A-Z]\\d+$"^^ . + "nickf@ebi.ac.uk" . + . + "http://purl.obolibrary.org/obo/MMO_"^^ . + . + . + . + . + "^\\w+$"^^ . + "ontology" . + . + . + . + "false"^^ . + . + . + "Sharkipedia Trend" . + "false"^^ . + "statistics" . + . + "Narcis Fernandez-Fuentes" . + "molecular biology" . + . + . + "cell" . + "false"^^ . + "obo" . + . + "false"^^ . + "subject agnostic" . + . + "false"^^ . + "https://cropontology.org/rdf/CO_350:"^^ . + "co_339" . + . + "clb" . + "Ontology for Avida digital evolution platform" . + "http://www.kegg.jp/entry/"^^ . + "Stefanie Seltmann" . + "bacmap.biog" . + "CRediT (Contributor Roles Taxonomy) is high-level taxonomy, including 14 roles, that can be used to represent the roles typically played by contributors to scientific scholarly output. The roles describe each contributor’s specific contribution to the scholarly output."^^ . + . + "A registry of life science prefxes"^^ . + . + . + . + "phylogeny" . + . + . + "false"^^ . + . + . + "senso" . + . + . + "dbd" . + . + "t4fs" . + "biomedical science" . + . + . + "Enzo Life Sciences is an antibody vendor."^^ . + . + "MNEST029358"^^ . + . + "https://metacyc.org/compound?orgid=META&id="^^ . + . + "00000001"^^ . + . + . + "RNAloops" . + . + . + "ontology" . + "sdbs" . + "microbiology" . + . + . + . + . + "hancestro" . + . + "ligea" . + "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . + "^PD\\d+$"^^ . + . + . + "gene expression" . + . + . + "FlyBase Gene" . + "^\\d+$"^^ . + "life science" . + . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/MF_$1"^^ . + . + . + . + . + . + "The Identifiers.org Resolution Service provides consistent access to life science data using Compact Identifiers. Compact Identifiers consist of an assigned unique prefix and a local provider designated accession number (prefix:accession)." . + "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id="^^ . + . + . + . + "1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "TreeFam is a database of phylogenetic trees of gene families found in animals. Automatically generated trees are curated, to create a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments."^^ . + . + . + . + . + "https://www.gwascentral.org/study/"^^ . + . + . + . + "BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies."^^ . + "^(urn|URN):(nbn|NBN)(:[A-Za-z_0-9]+)*.+$"^^ . + . + "population genetics" . + "antibodies" . +_:N05e1f9d70eab443abe9085e5871a4338 "Patricia Brooks" . + "neuroscience" . + "Phenotype And Trait Ontology" . + . + . + "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions."^^ . + . + . + . + . + . + . "^\\d{7}$"^^ . - . - "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies."^^ . - . - "https://doulix.com/biomodules/$1"^^ . - . - . - "opmi" . - . - . - "gene" . - "genome" . - . - "social media" . - "^\\d+$"^^ . - "http://purl.obolibrary.org/obo/ICO_$1"^^ . - "false"^^ . - "brycemecum@gmail.com" . - . - . - . - "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID="^^ . - "Topology Data Bank of Transmembrane Proteins" . - . - . - "The need of a common ontology for describing orthology information in biological research communities has led to the creation of the Orthology Ontology (ORTH). ORTH ontology is designed to describe sequence homology data available in multiple orthology databases on the Web (e.g.: OMA, OrthoDB, HieranoiDB, and etc.). By sequence homology data, we mostly mean gene region, gene and protein centric orthology, paralogy, and xenology information. Depending on the database, the homology information is structured in different ways. ORTH ontology accommodates these disparate data structures namely Hierarchical Orthologous Group (HOG), cluster of homologous sequences and homologous-pairwise relations between sequences. In addition to the specific ORTH terms, this specification includes terms of the imported ontologies (e.g. Semanticscience Integrated Ontology, SIO) which are pertinents to represent the information from various orthology databases in a homogeneous way."^^ . - . - "VSAO_RETIRED" . - . - "ontology" . - "aaindex" . - . - "http://purl.obolibrary.org/obo/PROPREO_"^^ . - . - "KW-1273"^^ . - "http://birdgenenames.org/cgnc/GeneReport?id="^^ . - "life science" . - . - "^\\d+$"^^ . - . - . - . - "mosaic" . - . - . - . - "ORPHA" . - . - "https://cropontology.org/rdf/CO_324:$1"^^ . - . - . - "^\\d+$"^^ . - . - "Sigma Aldrich" . - "NM_006262"^^ . + . + . + "worms" . + . + "ontology" . + "biomedical science" . + "false"^^ . + "false"^^ . + . + . + . + . + "false"^^ . + . + "life science" . + "life science" . + . + . + "false"^^ . + . + "JCGG-STR008690"^^ . + . + . + . + . + . + . + "egon.willighagen@maastrichtuniversity.nl" . + "0000504"^^ . + . + . + . + . + . + . + "https://bioregistry.io/gmd:"^^ . + "http://purl.obolibrary.org/obo/NIF_CELL_$1"^^ . + "biomedical science" . + . + . + . + "GWAS Catalog" . + "life science" . + "false"^^ . + . + . + . + . + "The Homeodomain Resource is a curated collection of sequence, structure, interaction, genomic and functional information on the homeodomain family. It contains sets of curated homeodomain sequences from fully sequenced genomes, including experimentally derived homeodomain structures, homeodomain protein-protein interactions, homeodomain DNA-binding sites and homeodomain proteins implicated in human genetic disorders."^^ . + . + . + . + "https://eds.gene.le.ac.uk/home.php?select_db="^^ . + "FR-FCM-ZYGW"^^ . + "virology" . + . + "ISA1083-2"^^ . + . + . + "Prefixes useful in annotating documentation provenance." . + . + . + "false"^^ . + . + "h2o"^^ . + . + "anatomy" . + . + "false"^^ . + "lincs.cell" . + . + . + . + . + . + . + . + "The PRotein Ontology (PRO) has been designed to describe the relationships of proteins and protein evolutionary classes, to delineate the multiple protein forms of a gene locus (ontology for protein forms), and to interconnect existing ontologies."^^ . + . + . + . + . + . + "http://purl.org/spar/cito/$1"^^ . + . + . + . + . + "http://ctdbase.org/detail.go?type=gene&acc=$1"^^ . + . + "http://purl.obolibrary.org/obo/EPO_"^^ . + "structural biology" . + . + "The ATCvet system for the classification of veterinary medicines is based on the same overall principles as the ATC system for substances used in human medicine. In ATCvet systems, preparations are divided into groups, according to their therapeutic use. First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use."^^ . + . + . + . + . + "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=$1"^^ . + . + . + . + "pubchem.cell" . + . + . + "Database of human Major Histocompatibility Complex" . + "slm" . + . + . + . + "life science" . + "BloodPAC" . + . + . + . + . + . + "dna" . + . + . + . + "http://nbn-resolving.org/resolver?identifier=$1&verb=redirect"^^ . + "M0001"^^ . + "http://www.humanproteomemap.org/protein.php?hpm_id="^^ . + "^MIMAT\\d{7}$"^^ . + "^SLCTR/\\d{4}/\\d+$"^^ . + . + . + . + . + "https://bioregistry.io/kerafast:"^^ . + . + . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/TAXRANK_"^^ . + . + . + "International Standard Book Number" . + . + . + "http://www.yeastract.com/view.php?existing=locus&orfname=$1"^^ . + . + . + . + . + . + . + . + . + . + "obo" . + . + . + . + "https://www.wikidata.org/wiki/Property:$1"^^ . + "0000079"^^ . + . + . + "j.a.moore@dundee.ac.uk" . + . + "^\\d{6}$"^^ . + "http://purl.obolibrary.org/obo/COLAO_$1"^^ . + . + "false"^^ . + "EMLSAT00000003403"^^ . + . + . + . " Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator currently includes metabolite concentrations, RNA modifications and half-lives, protein abundances and modifications, and reaction kinetics integrated from several databases and numerous publications. The Datanator website and REST API provide tools for extracting clouds of data about specific molecules and reactions in specific organisms and specific environments, as well as data about similar molecules and reactions in taxonomically similar organisms."^^ . - . - "structural biology" . - . - . - . - "false"^^ . - . - "spider" . - "https://hamap.expasy.org/unirule/"^^ . - "genome" . - . - . - . - "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events"^^ . - "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis."^^ . - . - . - . - . - "false"^^ . - . - . - . - "false"^^ . - "090803"^^ . - . - . - . - . - . - "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam="^^ . - "dna" . - . - . - "http://iflastandards.info/ns/fr/frbr/frbrer/"^^ . - . - "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum="^^ . - . - "http://wolfe.gen.tcd.ie/cgi/browser/ygob.pl?gene=$1"^^ . - "immunology" . - . - . - . - "0000000"^^ . - . - . - "Unique Ingredient Identifier" . - . - . - "TogoVar" . - "cell replacement" . - "Cross-linker reagents ontology" . - . - . - . - . - . - . - . - . - "The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort."^^ . - . - . - . - . - . - "^[0-9]{10}$"^^ . - . - . - "false"^^ . - . - "umbbd.reaction" . - "false"^^ . - . - "2005080"^^ . - . - "CTCAE" . - . - . - "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to proteins in Gramene."^^ . - "encode" . - . - . - . - "http://purl.obolibrary.org/obo/TAO_"^^ . - . - . - . - . - . - "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes."^^ . - . - "HWUPKR0MPOU8FGXBT394"^^ . - "reactions" . - . - "hannele.laivuori@helsinki.fi" . - "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1"^^ . - "Each OCI (Open Citation Identifier) has a simple structure: oci:-, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first is the identifier for the citing bibliographic resource, while the second is the identifier for the cited bibliographic resource."^^ . - . - "^\\d{7}$"^^ . - "The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata."^^ . - "0376"^^ . - "https://www.ncbi.nlm.nih.gov/gtr/conditions/$1"^^ . - . - . - . - . + . + . + . + . + "^CHEMBL\\d+$"^^ . + "https://data.4dnucleome.org/biosources/$1"^^ . + . + . + . + . + . + "https://ssbd.riken.jp/database/project/$1"^^ . "A modeling paradigm-specific registry of prefixes and their URL expansions" . - . - . - . - "transcriptomics" . - "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - "ontology" . - "ORCiD" . - . - "^\\d+\\.\\d+$"^^ . - . - . - . - . - . - . - "false"^^ . - . - "fbql" . - . - . - "insdc.gca" . - "human" . - . - . - . - "Alistair Miles" . - . - . - "Daniel Schober" . - "^\\d{3}-\\d{3}-\\d$"^^ . - . - . - "CryptoDB" . - . - . - . - . - . - "http://exac.broadinstitute.org/transcript/$1"^^ . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/NCRO_"^^ . + "STAP (Statistical Torsional Angles Potentials) was developed since, according to several studies, some nuclear magnetic resonance (NMR) structures are of lower quality, are less reliable and less suitable for structural analysis than high-resolution X-ray crystallographic structures. The refined NMR solution structures (statistical torsion angle potentials; STAP) in the database are refined from the Protein Data Bank (PDB)."^^ . + . + "An ontology representation of the LIPIDMAPS nomenclature classification."^^ . + . + . + "^\\w+$"^^ . + "^[A-Z0-9]{4}$"^^ . + . + "maria.taboada@usc.es" . + . + "geneotype" . + "0000546"^^ . + "obo" . + "^JCRB\\d+$"^^ . + . + "mmp.ref" . + . + . + "Cell line databases/resources"^^ . + . + "http://cgsc.biology.yale.edu/Site.php?ID="^^ . + "false"^^ . + . + . + "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id="^^ . + . + "https://www.fishbase.ca/summary/$1"^^ . + "chemistry" . + . + . + "Human developmental anatomy, timed version" . + . + . + . + . + . + "ximbio" . + "ontology" . + . + "false"^^ . + . + "hpath" . + "http://rdfs.org/ns/void#$1"^^ . + "2c6s"^^ . + "minid" . + . + "skos" . + "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/$1"^^ . + . + "obo" . + "https://pypi.org/project/"^^ . + . + . + . + "habronattus" . + "P00747__P07355"^^ . + "computer science" . + . + . + "false"^^ . + . + "bibliography" . + . + "github" . + "Jianmin Wu" . + "10004892"^^ . + . + "interlex" . + "botany" . + _:Nb6174b7d1201433680b115700d184ee9 . + . + . + . + . + . + "nmr" . + "https://purl.dataone.org/odo/SALMON_"^^ . + . + . + . + . + . + . + . + "https://civicdb.org/links/variant/$1"^^ . + . + . + . + "tgd" . + . + . + . + . + . + . + "FBgn0000015"^^ . + . + . + "The World Register of Marine Species (WoRMS) provides an authoritative and comprehensive list of names of marine organisms. It includes synonyms for valid taxonomic names allowing a more complete interpretation of taxonomic literature. The content of WoRMS is administered by taxonomic experts."^^ . + . + "http://lincsportal.ccs.miami.edu/datasets/#/view/$1"^^ . + . + . + . + . + "sjwang@mcw.edu" . + . + "qudt" . + . + "00000d53-99bc-4d3e-8ed7-6dc358baccb7"^^ . + "SNOMEDCT_US_2018_03_01" . + . + "hc.trial" . + . + . + . + "anatomy" . + . + "crop2ml" . + . + . + . + "pubchem.element" . + . + . + "medicine" . + "^\\d{7}$"^^ . + . + . + . + . + . + . + "slkbase" . + "nb2018006591"^^ . + . + "ncbidrs" . + . + . + . + . + "ontology" . + . + . + . + . + "life science" . + . + . + . + . + . + . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/APO_$1"^^ . + . + . + . + . + "Cell line collections"^^ . + . + . + . + "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=$1"^^ . + . + . + . + "GE86325"^^ . + . + . + _:Nd8046430bd4b45a48b58926eac75104a . + . + . + "false"^^ . + . + "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1"^^ . + . + . + . + "https://icd.codes/icd10cm/$1"^^ . + . + . + "The General Formal Ontology is a top-level ontology for conceptual modeling, which is being constantly further developed by Onto-Med. It includes elaborations of categories like objects, processes, time and space, properties, relations, roles, functions, facts, and situations. Moreover, we are working on an integration with the notion of levels of reality in order to more appropriately capture entities in the material, mental, and social areas."^^ . + . + . + "life science" . + "grouping" . + . + _:N778e445c07cd4361abbd089c44880ce0 . + . + "virushostdb" . + "^\\d+$"^^ . + . + . + "reactome" . + "biology" . + "false"^^ . + . + . + . + . + "http://www.sasbdb.org/data/$1"^^ . + "^\\d{7}$"^^ . + . + "https://tree.opentreeoflife.org/taxonomy/browse?id="^^ . + . + . + "Medaka fish anatomy and development" . + "AcknowledgementCondition"^^ . + . + . + "eagle-i resource ontology" . + "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references individual receptors or subunits."^^ . + "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. This provides protein information for a given gene model and provides links to other sources such as UniProtKB and GenPept"^^ . + . + . + "NBC00001"^^ . + "^\\w{3}\\d{5}(\\.\\d+)?$"^^ . + . + "Gene Expression Ontology" . + . + . + . + "https://www.hipsci.org/lines/#/lines/"^^ . + "ontology" . + "uniprot/swiss-prot" . + "false"^^ . + . + . + . + . + . + "has local unique identifier pattern" . + "ontology" . + . + . + . + "ncim" . + . + . + "false"^^ . + "tm.shah@cgiar.org" . + . + . + . + "^\\d{7}$"^^ . + "ontology" . + . + "false"^^ . + . + . + . + "false"^^ . + "Fly taxonomy" . + . + . + . + . + "0000012b-5661-2f63-2f73-b43980000000"^^ . + . + . + "dunand@lrsv.ups-tlse.fr" . + . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology."^^ . + . + . + . + "https://wheat.pw.usda.gov/cgi-bin/GG3/report.cgi?class=reference&name=$1"^^ . + "The Behaviour Change Intervention Ontology is an ontology for all aspects of human behaviour change interventions and their evaluation."^^ . + . + "High-quality Automated and Manual Annotation of microbial Proteomes" . + . + . + . + . + . + "Nathan Baker" . + . + . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + "protein" . + "ADA"^^ . + "The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO)."^^ . + "375364"^^ . + . + "echinobase" . + . + . + "true"^^ . + "pathoplant" . + "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp="^^ . + "MobiDB" . + . + . + "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates."^^ . + . + "pierre-alain.binz@chuv.ch" . + . + . + . + . + . + "H-InvDb Protein" . + . + . + . + . + . + . + "https://lincs.hms.harvard.edu/db/antibodies/"^^ . + . + . + "false"^^ . + . + "Tobias Schulze" . + . + . + "Sean May" . + . + . + "support@ccdc.cam.ac.uk" . + . + "Extensible Markup Language" . + "OMIM Phenotypic Series" . + . + . + . + . + "gnome" . + . + "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=$1"^^ . + . + "Genetics Home Reference" . + "^\\d+$"^^ . + "te" . + . + . + "life science" . + "000064"^^ . + "https://www.drugbank.ca/categories/$1"^^ . + . + "EY223054.1"^^ . + . + . + "https://flowrepository.org/id/$1"^^ . + "C. elegans development ontology" . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "^\\d+$"^^ . + "phenotype" . + . + "The SPDX License List is a list of commonly found licenses and exceptions used in free and open source and other collaborative software or documentation. The purpose of the SPDX License List is to enable easy and efficient identification of such licenses and exceptions in an SPDX document, in source files or elsewhere. The SPDX License List includes a standardized short identifier, full name, vetted license text including matching guidelines markup as appropriate, and a canonical permanent URL for each license and exception."^^ . + . + . + "protein" . + . + . + . + . + . + . + "obo" . + "http://purl.obolibrary.org/obo/OHPI_$1"^^ . + . + . + . + . + . + . + "^[AEP]-\\w{4}-\\d+$"^^ . + "https://odc-tbi.org/data/"^^ . + . + . + "https://pb.apf.edu.au/phenbank/strain.html?id="^^ . + . + . + . + . + "https://bioregistry.io/mesh.2012:"^^ . + . + "troy_pells@yahoo.ca" . + . + . + . + . + . + . + . + . + . + "egon.willighagen@gmail.com" . + . + . + . + . + . + "https://biopragmatics.github.io/providers/hog/$1"^^ . + . + "BN000065"^^ . + . + "foodon" . + "^\\w+$"^^ . + . + "rna" . + . + "https://registry.identifiers.org/registry/$1"^^ . + . + "false"^^ . + "life science" . + . + . + "genome" . + "pharmgkb.pathways" . + . + . + . + . + . + . + "c0001"^^ . + "Xenopus Anatomy Ontology" . + "false"^^ . + "http://purl.obolibrary.org/obo/PROPREO_$1"^^ . + . + . + . + . + . + . + "dna" . + "false"^^ . + . + "PF00004"^^ . + . + . + "earth science" . + "pathway" . + . + . + "obo" . + . + . + "Philipp Bucher" . + . + . + . + "cell_biolabs" . + . + . + "http://purl.obolibrary.org/obo/TRANS_"^^ . + . + . + "Site groups are orthologous positions in human, mouse, rat, etc. where phosphorylations or other PTMs occur."^^ . + . + . + "90901"^^ . + "https://cellrepo.ico2s.org/repositories/$1"^^ . + . + . + . + . + "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1"^^ . + . + . + "JGI Phytozome" . + . + . + "Antony Williams" . + "life sciences" . + "EcoCyc is a scientific database for the bacterium Escherichia coli K-12 MG1655. The EcoCyc project performs literature-based curation of its genome, and of transcriptional regulation, transporters, and metabolic pathways."^^ . + "dawood@helix.nih.gov" . + . + . + "pharmacogenomics" . + "stoeckrt@pcbi.upenn.edu" . + . + . + "protein" . + . + . + "ontology" . + . + . + . + "^\\d{4,}$"^^ . + . + "jak@ucop.edu" . + . + "spp" . + . + "false"^^ . + . + . + . + . + "https://www.metanetx.org/comp_info/$1"^^ . + . + . + . + . + "gene" . + "sepio" . + . + "http://www.narcis.nl/publication/RecordID/"^^ . +_:Na0f17686c21a4cc9adb495d45d340149 "chinhda@alleninstitute.org" . + . + "icepo" . + . + . + . + . + "RSC3"^^ . + "The Carbohydrate-Active Enzyme (CAZy) database is a resource specialized in enzymes that build and breakdown complex carbohydrates and glycoconjugates. These enzymes are classified into families based on structural features."^^ . + . + . + . + "http://biomodels.net/rdf/vocabulary.rdf#$1"^^ . + "^[a-z0-9\\_]+$"^^ . + . + "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid="^^ . + . + "We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive)."^^ . + "tccd" . + . + "false"^^ . + . + . + "Michael Witt" . + . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + "ZFIN" . + . + . + "false"^^ . + . + . + "PyPI" . + "Concept used by ModelDB, an accessible location for storing and efficiently retrieving computational neuroscience models."^^ . + . + "cutg" . + . + . + . + . + "false"^^ . + . + . + "N21"^^ . + . + "http://planttfdb.cbi.pku.edu.cn/tf.php?uid="^^ . + . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem Compound archives chemical structures and records."^^ . + "miriam"^^ . + . +_:N748c45da2ac44701ab1793f47c9389da "helpdesk@eionet.europa.eu" . + . + . +_:N92cb3dfb7c5b426f8caf565b44bc8ab9 "bgee@isb-sib.ch" . + "false"^^ . + . + . + "ENSG00000139618"^^ . + . + . + . + . + . + . + . + . + "ontology" . + "http://purl.obolibrary.org/obo/FIX_$1"^^ . + . + "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/"^^ . + . + . + . + . + "0040379"^^ . + . + "ontology" . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_qual_"^^ . + . + "false"^^ . + . + "anatomy" . + . + . + . + . + "^[0-9]+$"^^ . + . + "false"^^ . + . + . + . + . + . + "Sigma Aldrich is a life sciences supply vendor."^^ . + . + . + "false"^^ . + . + "drsc" . + . + . + . + . + . + . + . + . + "0002533"^^ . + . + . + . + . + "BIND accession number" . + "ontology" . + . + . + . + . + . + . + "Linguist" . + . + . + . + "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/"^^ . + "reo" . + "Systems Science of Biological Dynamics database (SSBD:database) is an added-value database for biological dynamics. It provides a rich set of open resources for analyzing quantitative data and microscopy images of biological objects, such as single-molecule, cell, tissue, individual, etc., and software tools for analysis. Quantitative biological data and microscopy images are collected from a variety of species, sources, and methods. These include data obtained from both experiments and computational simulations."^^ . + . + "https://www.ebi.ac.uk/QuickGO/GProtein?ac="^^ . + . + "genome" . + . + . + . + . + "https://aopwiki.org/relationships/"^^ . + . + . + "transcript" . + "http://www.ontologyrepository.com/CommonCoreOntologies/$1"^^ . + . + . + . + "false"^^ . + . + . + . + "edam.topic" . + "noncodev3" . + . + . + . + . + "om" . + . + "0000574"^^ . + "^\\d{7}$"^^ . + "biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology" . + . + . + . + . + "dna" . + "https://giardiadb.org/giardiadb/app/record/gene/"^^ . + . + "life science" . + . + . + . + . + . + "http://phylomedb.org/?seqid=$1"^^ . + . + . + . + . + . + "Alzheimer's Disease Ontology" . + "bioinformatics" . + "false"^^ . + . + . + . + . + . + . + . + . + "remote sensing" . + "numpy"^^ . + . +_:N559401d0120e4ad591fe8463d3f0d80f "J.Bard@ed.ac.uk" . + . + "molecular" . + . + "^osa-miR\\d{3,5}[a-z]{0,1}$"^^ . + . + "false"^^ . + . + . + "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies."^^ . + "biochemistry" . + "CNBG_0001"^^ . + . + "false"^^ . + "Martin Ramirez" . + . + . + . + "http://www.w3.org/XML/1998/namespace#"^^ . + . + "systems biology" . + "https://dandiarchive.org/dandiset/"^^ . + . + . + "http://www.iresite.org/IRESite_web.php?page=view&entry_id="^^ . + . + . + . +_:N9e9771e602eb4413b1a7aa32485aa5b5 "First DataBank Customer Support" . + . + . + . + . + "false"^^ . + . + . + . + . + "http://www.vbase2.org/vgene.php?id="^^ . + . + . + . + . + . + . + . + "Japan Collection of Microorganisms" . + . + . + . + . + . + . + . + "SNOMEDCT_US_2019_03_01" . + . + "AEO_RETIRED" . + "https://www.ebi.ac.uk/ena/browser/view/"^^ . + . + "^\\w+$"^^ . + "The Exome Aggregation Consortium (ExAC) is a coalition of investigators seeking to aggregate and harmonize exome sequencing data from a variety of large-scale sequencing projects, and to make summary data available for the wider scientific community. The data pertains to unrelated individuals sequenced as part of various disease-specific and population genetic studies and serves as a reference set of allele frequencies for severe disease studies. This collection references transcript information."^^ . + . + . + . + . + . + "ORCID" . + . + . + . + . + . + "LINCS Protein" . + . + "model organism database" . + "http://purl.obolibrary.org/obo/OGG_"^^ . + . + . + "GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc includes further links to GeneCards, NCBI's Human Genome Sequencing, UniGene, and mapping resources"^^ . + "identifiers.namespace" . + "Golm Metabolome Database Reference Substance" . + "developmental biology" . + . + "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments."^^ . + . + . + . + "false"^^ . + "biomedical science" . +_:N778e445c07cd4361abbd089c44880ce0 "Crop Ontology Helpdesk" . + "ontology" . + . + "false"^^ . + . + . + . + "56305849200"^^ . + "obo" . + "kinetics" . + . + "http://purl.obolibrary.org/obo/DDANAT_$1"^^ . + . + "false"^^ . + . + "false"^^ . + . + "https://labsyspharm.github.io/lspci/$1"^^ . + . + "life science" . + . + . + . + . + _:N92cb3dfb7c5b426f8caf565b44bc8ab9 . + "life science" . + "http://purl.obolibrary.org/obo/CRO_"^^ . + . + . + . + . + "dylan.mcgagh@magd.ox.ac.uk" . + "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:$1"^^ . + "false"^^ . + "oharb@pcbi.upenn.edu" . + . + "epidemiology" . + "oid" . + "obo" . + "http://purl.obolibrary.org/obo/FBcv_"^^ . + . + "https://pubchem.ncbi.nlm.nih.gov/bioassay/$1"^^ . + . + "The OPB is a reference ontology of classical physics as applied to the dynamics of biological systems. It is designed to encompass the multiple structural scales (multiscale atoms to organisms) and multiple physical domains (multidomain fluid dynamics, chemical kinetics, particle diffusion, etc.) that are encountered in the study and analysis of biological organisms."^^ . + "false"^^ . + . + . "false"^^ . - . - . - . - "http://exac.broadinstitute.org/gene/"^^ . - . - . - . - "false"^^ . - "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs."^^ . - . - "https://www.google.com/patents/"^^ . - . - "phylogenomics" . - . - . - . - . - . - "^\\d{7}$"^^ . - "github" . - _:Nf2b505d63be24469901c6814285d166b . - . - . - "http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=geneInfo&gid=$1"^^ . - . - . - . - . - . - "data management" . - . - "ClinVar Variation" . - "The Pan African Clinical Trials Registry (PACTR) is a regional register of clinical trials conducted in Africa. The registry is an African initiative serving the needs of Africans. It provides an open-access platform where clinical trials can be registered free of charge. The PACTR aims to increase clinical trial registration in Africa by developing awareness of the need to register trials and supporting trialists during registration. (from homepage)"^^ . - . - . - "pharmacology" . - . - "neuroscience" . - . - . - . - . - "andreas.ruepp@helmholtz-muenchen.de" . - . - . - . - "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID="^^ . - . - . - . - "^UMIN\\d+$"^^ . - "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=$1"^^ . - . - . - . - "ensembl.fungi" . - . - . - "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID="^^ . - "0000196"^^ . - . - . - . - . - "^\\d+$"^^ . - . - . - . - "false"^^ . - . - "ndf-rt" . - . - "Jennifer R Smith" . - . - . - "false"^^ . - . - "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id="^^ . - . - . - "MGD" . - "https://www.kegg.jp/entry/$1"^^ . - . - . - . - . - . - "unpd" . - . - "decipher" . - . - . - . - . - "AADB12"^^ . - . - . - . - . - "YAL001C"^^ . - "protein" . - "http://bitterdb.agri.huji.ac.il/Receptor.php?id="^^ . - . - "HUGO Gene Nomenclature Committee" . - "013681"^^ . - . - . - "pubchem.element" . - . - "MimoDB" . - . - "ontology" . - . - . - "International Classification of Functioning, Disability and Health" . - . - . - "https://www.merckmillipore.com/catalogue/item/"^^ . - "maizegdb.locus" . - "ICEs have also been reported capable to mobilize other genetic elements, such as the chromosome-borne integrative and mobilizable elements (IMEs), cis-mobilizable elements (CIMEs), plasmids and etc. IMEs and CIMEs are also important vehicles for the spread of antiobiotic resistances and virulence factors. However, unlike ICE, IMEs and CIMEs are commonly devoid of conjugal apparatus, thus have to hijack the machinery of other conjugative elements."^^ . - . - . - . - "mcarthua@mcmaster.ca" . - . - . - "snomedct" . - . - "EP0311"^^ . - . - . - . - . - "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F"^^ . - . - "developmental biology" . - . - "^\\d{7}$"^^ . - . - "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=$1"^^ . - . - . - "The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways."^^ . - "ontology" . - . - . - . - . - . - "medical informatics" . - "alteration" . - . - . - . - . - . - . - . + "^UDB\\d{6}$"^^ . + . + . + . + . + "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1"^^ . + "obo" . + . + "https://www.emsl.pnnl.gov/project/"^^ . + . + "http://www.gramene.org/db/protein/protein_search?protein_id="^^ . + "INSDC CDS" . + "semapv" . + . + . + "2h6o"^^ . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_dys_$1"^^ . + "CHMO, the chemical methods ontology, describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy prepare and separate material for further analysis, such as sample ionisation, chromatography, and electrophoresis synthesise materials, such as epitaxy and continuous vapour deposition It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI)."^^ . + . + "alan.bridge@isb-sib.ch" . + . + "Lipid Ontology" . + "DataNode"^^ . + . + . + . + . + "ECGOntology" . + "protein" . + . + . + "ontology" . + . + "rnamod" . + . + "interaction" . + "https://www.brenda-enzymes.de/ligand.php?brenda_group_id=$1"^^ . + . + . + "17186"^^ . + . + . + . + . + . + . + . + . + "ontology" . + . + . + "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name=$1"^^ . + . + "1"^^ . + . + . + "false"^^ . + . + "https://flybase.org/reports/FBrf"^^ . + . + . + . + "Pesticide Properties DataBase" . + "BEI Resources" . + "aio" . + "http://purl.obolibrary.org/obo/OHD_"^^ . + . + "biochemistry" . + "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to enzyme information."^^ . + "^\\d{7}$"^^ . + "breeding" . + . + "http://purl.obolibrary.org/obo/OMO_$1"^^ . + . + "metabolite" . + . + "4201PAT-CCTCC00348"^^ . + . + . + "Ontology of Genetic Susceptibility Factor" . + . + "NASC code" . + . + . . - . - "https://purl.dataone.org/odo/SALMON_"^^ . - . - . - . - . - "structrual bioinformatics" . - "nfdi4chem.ontocape" . - . - . - "false"^^ . - . - . - . - . - "^\\d{7}$"^^ . - . - "drug metabolism" . - "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code="^^ . - . - . - "Ontology of species-neutral phenotypes observed in pathogen-host interactions."^^ . - . - "atfdb.family" . - "drugs" . - "ontology" . - . - . - "Norine is a database dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids whose primary structure is not always linear, often being more complex and containing cycles and branchings."^^ . - . - . - "false"^^ . - . - "NeuroVault Collection" . - . - . - "83088"^^ . - "Ctenophore Ontology" . - . - "applied microbiology" . - . + . + "FuncBase Mouse" . + "EDAM Topic" . + "ontology" . + . + . + "10b38aaf-b977-4950-85b8-f4775f66658d"^^ . + "rapdb.locus" . + "imsr_em" . + "protein" . + . + . + "Silvio Peroni" . + . + . + "dcterms" . + . + "^[0-9]+$"^^ . + . + . + . + "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."^^ . + . + "biology" . + . + "unirule" . + . + "https://www.ncbi.nlm.nih.gov/nuccore/"^^ . + . + "0000598"^^ . + "http://purl.obolibrary.org/obo/MS_$1"^^ . + "false"^^ . + . + . + . + "false"^^ . + . + . + "CharProt" . + . + . + . + "false"^^ . + . + "gene" . + . + "MedDRA" . + . + . + . + "http://purl.obolibrary.org/obo/COVOC_$1"^^ . + "^\\d{7}$"^^ . + "^\\d+$"^^ . + . + . + . + "1.1.1.1"^^ . + . + . + "http://purl.obolibrary.org/obo/TAO_"^^ . + "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/"^^ . + . + . + "https://www.wormbase.org/get?name=$1"^^ . + . + . + . + . + . + "Human Oral Microbiome Database" . + . + "http://arabidopsis.info/StockInfo?NASC_id="^^ . + "^P\\d{5}$"^^ . + . + "k-12 teacher" . + . + "life science" . + "ydpm" . + . + "0002005"^^ . + . + . + "bs" . + "^PA\\d+$"^^ . + . + . + "false"^^ . + . + "biology" . + . + . + . + "GiardiaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + . + . + "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1"^^ . + "knockout" . + . + "biomedical science" . + . + . + "langual" . + . + . + "blast" . + "false"^^ . + . + . + . + "http://www.humanproteomemap.org/spectrum.php?pep_id=$1"^^ . + "human" . + . + . + "obo" . + "mutant" . + . + . + . + "biology" . + . + . + "MESHC" . + . + "Yam ontology" . + "mutant" . + "0.7-123"^^ . + "http://purl.obolibrary.org/obo/FBSP_$1"^^ . + . + . + . + "^\\d+$"^^ . + "genetic engineering" . + . + "DRKS00031815"^^ . + . + . + "cell biology" . + . + . + "Frederique Lisacek" . + "A001094"^^ . + . + "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$"^^ . + "Mental Disease Ontology" . + "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1"^^ . + "false"^^ . + . + "ontology" . + . + . + "^10.\\d{2,9}/.*$"^^ . + . + . + "Meghan Balk" . + "John Kunze" . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "0000001"^^ . + . +_:N95542206a009415999a81d74302dc9b9 "helpdesk@cropontology-curationtool.org" . + . + . + . + . + . + . + "unimod" . + . + "The BioStudies database holds descriptions of biological studies, links to data from these studies in other databases at EMBL-EBI or outside, as well as data that do not fit in the structured archives at EMBL-EBI. The database can accept a wide range of types of studies described via a simple format. It also enables manuscript authors to submit supplementary information and link to it from the publication."^^ . + "life science" . + . + "true"^^ . + . + . + . + . + "https://bacteria.ensembl.org/id/$1"^^ . + "https://bacteria.ensembl.org/id/"^^ . + "Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data."^^ . + . + . + . + . + . + . + . + "comparative genomics" . + "agriculture" . + "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$"^^ . + . + . + . + "false"^^ . + "GeneDB" . + . + . + "plant anatomy" . + . + "https://cropontology.org/rdf/CO_366:$1"^^ . + . + . +_:N41832f0c597c429ab1999cfcb8242156 "info@who.int" . + "apaonto" . + . + "http://purl.obolibrary.org/obo/HP_"^^ . + "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$"^^ . + . + . + . + . + . + . + . + "Cancer cell LInes GEne fusions portAl" . + . + . + . + "26"^^ . + . + "false"^^ . + . + . + "true"^^ . + "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . + "epidemiology" . + "https://www.metabolome-express.org/datasetview.php?datasetid=$1"^^ . + "false"^^ . + "myco.tuber" . + . + . + "false"^^ . + "obo" . + "urn:nbn:fi:tkk-004781"^^ . + "^\\d{7}$"^^ . + . + . + "Cell line databases/resources"^^ . + . + "SwissProt" . + . + "4DN"^^ . + "has responsible" . + "false"^^ . + . + . + . + "structural biology" . + "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid="^^ . + . + . + . + "37"^^ . + . + . + "biomedical science" . + . + "the FAIR Cookbook" . + "Bgee gene" . + "ontology" . + . + . + "^10.\\w{4}/\\w{10}$"^^ . + "protein" . + . + "PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references individual protein abundance levels."^^ . + . + "lepao" . + "false"^^ . + "rna-seq" . + . + "Gramene Gene" . + . + "NIF Standard Ontology: Qualities" . + "A public repository, standards compliant, for proteomics image data published in the literature. This repository currently contains data from 16 published articles, putting together 22 reference maps for 15 species, totalizing nearly 4'400 identified spots."^^ . + . + . + . + . + "Odor Molecules DataBase" . + . + "http://www.cathdb.info/cathnode/"^^ . + "DisProt region" . + "life science" . + . + . + . + . + "fbol" . + "https://www.enzolifesciences.com/"^^ . + . + "Genome assembly database - RefSeq accessions" . + "cattleqtldb" . + "louis@imbb.forth.gr" . + . +_:N80b3ec35ee2f44e1bd79e2dfa8a15987 "Crop Ontology Helpdesk" . + . + . + "eggnog" . + . . - . - . - . - . - . - . + . + "DSSTox_CID" . + . + . . - "re3data" . - . - . - "geonames.feature" . - . - . - . - . - . - "ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting levels, temperature); exposures of humans or any other organisms to stressors through a variety of routes, for purposes of public health, environmental monitoring etc, stimuli, natural and experimental, any kind of environmental condition or change in condition that can be experienced by an organism or population of organisms on earth. The scope is very general and can include for example plant treatment regimens, as well as human clinical exposures (although these may better be handled by a more specialized ontology)."^^ . - . - . - "An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity."^^ . - . - . - . - . - "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid="^^ . - "obo" . - . - . - . - . - "mauno.vihinen@med.lu.se" . - . - . - "^\\d{7}$"^^ . - . - . - "protozoan" . - . - "N1899"^^ . - . - "obo" . - . - . - "false"^^ . - . - "false"^^ . - "0000000"^^ . - "^\\d+$"^^ . - . - . - "^C?\\d+$"^^ . - . - . - "A controlled vocabulary to support the study of transcription in the mouse brain"^^ . - . - "Database of Macromolecular Movements" . - "genecards.geneloc" . - "IntellectualContribution"^^ . - "Bioregistry Metaregistry" . - "PhosphoSite Residue" . - "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname="^^ . - . - "Korean Clinical Research Information Service" . - . - . - . - . - "contributor"^^ . - "4214"^^ . - "anatomy" . - . - . - . - . - . - . - "http://dictybase.org/gene/$1"^^ . - . - "ehda" . - . - "G00054MO"^^ . - "gmd" . - "dna" . - . - . - "false"^^ . - . - . - . - "^\\w+$"^^ . - . - . - . - . - "false"^^ . - "erm" . - . - "The Licensed Natural Health Products Database contains information about natural health products that have been issued a product licence by Health Canada."^^ . - "efo" . - . - "dc.elements" . - . - . - . - . - . - . - "life science" . - . - . - "Langua aLimentaria Thesaurus" . - . - . - "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities."^^ . - "false"^^ . - . - "0000003"^^ . - . - "false"^^ . - . - . - "https://dgrc.bio.indiana.edu/product/View?product="^^ . - "https://cropontology.org/rdf/CO_350:"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - . - "obo" . - "Bilateria anatomy" . - . - "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes)."^^ . - . - "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid="^^ . - . - . + . + . + "Cell Lines in PubChem"^^ . + . + "https://lincs.hms.harvard.edu/db/cells/"^^ . + . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC)."^^ . + "Molecular Signatures Database" . + . + . + . + . + . + . + . + . + . + "rscheuermann@jcvi.org" . + "jrsmith@mcw.edu" . + . + . + "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object="^^ . + . + . + "https://www.vmh.life/#gene/$1"^^ . + . + . + "^\\d+(-\\d+)?$"^^ . + . + . + "botany" . + . + . + "http://purl.obolibrary.org/obo/MIRNAO_"^^ . + "obo" . + "nmr" . + "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#$1"^^ . + . + . + "biomedical science" . + "jla1@sanger.ac.uk" . + . + . + . + "https://grch38.togovar.org/variant/"^^ . + . + . + "false"^^ . + . + . + . + "protein" . + . + "structure" . + "false"^^ . + . + "drsbello@gmail.com" . + . + . + . + "^\\d{8}$"^^ . + "http://purl.obolibrary.org/obo/COB_$1"^^ . + . + . + "xpo" . + . + . + . + "Regulatory Elements Database for Drosophila" . + . + . + . + . + "http://www.p3db.org/protein.php?id=$1&ref=0"^^ . + . + "^PM\\d{7}$"^^ . + "http://purl.obolibrary.org/obo/AERO_"^^ . + . + . + . + "ZDB-GENE-041118-11"^^ . + . + "Pankaj Jaiswal" . + . + . + "Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures."^^ . + "ebf69ca24298b28b2361e7d43eb52d6c"^^ . + "https://bdsc.indiana.edu/stocks/"^^ . + . + . + . + . + . + . + "hcao" . + . + . + "https://www.ebi.ac.uk/gxa/genes/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "envo" . +_:N7620f5ed203042c99a506f091ba3d8a8 "NLM Customer Service" . + . + "Fahim Imam" . + "false"^^ . + . + "obo" . + . + "^\\d+$"^^ . + . + . + . + . + "antweb" . + . + "pathway" . + "https://sumlineknowledgebase.com/?page_id=$1"^^ . + . + . + "false"^^ . + . + "Ximbio" . + "depod@embl.de" . + . + . + "ontology" . + "http://tolweb.org/"^^ . + . + . + . + . + . + "ATCC(in host)" . +_:N6d5b847b9ebd4556a5a9c1fcc34574ae "info@who.int" . + . + . + . + . + . + . + . + . + . + . + . . - "http://oncotree.mskcc.org/api/tumorTypes/search/code/"^^ . - "https://bioregistry.io/metaregistry/prefixcommons/$1"^^ . - . - "^RCV\\d+(\\.\\d+)?$"^^ . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/ONTOAVIDA_$1"^^ . + . + . + . + "false"^^ . + . + . + . + . + "Lentil Trait Dictionary in template v5 - ICARDA - July 2015"^^ . + . + . + "2.16.840"^^ . + . + "glycomics" . + . + "http://purl.obolibrary.org/obo/YPO_$1"^^ . + . + "neurobiology" . + . + . + "https://www.ncbi.nlm.nih.gov/clinvar/variation/$1"^^ . + . + . + . + . + . + . + "data management" . + "social science" . + . + . + . + . + "tcdb" . + "http://purl.obolibrary.org/obo/CVDO_$1"^^ . + . + . + . + . + . + "EC number" . + "The MMRRC database is a repository of available mouse stocks and embryonic stem cell line collections."^^ . + "pathway" . + "Ath_AT1G01030.1"^^ . + "edam.format" . + . + "https://www.gtexportal.org/home/gene/"^^ . + . + "UniProtKB_VAR" . + . + "^\\d{7}$"^^ . + . + . + . + . + "https://biopragmatics.github.io/providers/cemo/"^^ . + . + . + "FlyBrain Neuron Database" . + "Universal Natural Products Database" . + "false"^^ . + "small molecule" . + . + . + "health science" . + "^\\d+$"^^ . + "An anatomical and developmental ontology for ctenophores (Comb Jellies)"^^ . + . + "http://purl.obolibrary.org/obo/LPT_$1"^^ . + . + . + . + "http://lincsportal.ccs.miami.edu/SmallMolecules/#/view/$1"^^ . + "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+"^^ . + . + . + . + " A 7-character sid consists of \"d\" followed by the 4-character PDB ID of the file of origin, the PDB chain ID ('_' if none, '.' if multiple as is the case in genetic domains), and a single character (usually an integer) if needed to specify the domain uniquely ('_' if not). Sids are currently all lower case, even when the chain letter is upper case. Example sids include d4akea1, d9hvpa_, and d1cph.1."^^ . + "NOR00681"^^ . + . + "OntoBee" . + . + "ontology" . + "http://www.depod.bioss.uni-freiburg.de/showp.php?gene=$1"^^ . + "diseasesdb" . + . + . + . + . + "TransportDB is a relational database describing the predicted cytoplasmic membrane transport protein complement for organisms whose complete genome sequence are available."^^ . + "biopragmatics/bioregistry/424"^^ . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_322:"^^ . + "Jesualdo Tomás Fernández-Breis" . + . + . + . + . + . + "RSNA Informatics RadLex" . + "small molecule" . + . + . + . + . + "health sciences" . + "false"^^ . + . + . + . + . + "false"^^ . + . + "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . + . + . + . + "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=$1"^^ . + . + . + . + . + "biosystems" . + . + . + . + . + "Virtual Fly Brain" . + . + . + . + . + "TTDS00056"^^ . + . + . + "false"^^ . + "immunology" . + . + "26957"^^ . + . + "https://data.bloodpac.org/ga4gh/drs/v1/objects/$1"^^ . + . + . + . + . + "F0001"^^ . + "tigrfam" . + . + "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]"^^ . + "^A\\d{6}$"^^ . + . + "ngl" . + . + . + . + "https://www.affymetrix.com/LinkServlet?probeset=$1"^^ . + "http://ctdbase.org/detail.go?type=gene&acc="^^ . + . + . + . + "http://purl.obolibrary.org/obo/SO_$1"^^ . + . + "lcnafid" . + . + . + "^CTRI/\\d{4}/\\d{2}/\\d+$"^^ . + "http://purl.obolibrary.org/obo/IAO_$1"^^ . + "pgxbs-kftva5zv"^^ . + "false"^^ . + . + "ASPL0000349247"^^ . + "1009107926"^^ . + . + "botany" . + "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id="^^ . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "true"^^ . + . + . + "Human Unidentified Gene-Encoded" . + . + "ontology" . "M77F7JM"^^ . - "gc" . - "Tree of Life Web Project" . - . - . - "Iranian Registry of Clinical Trials. This is a Primary Registry in the WHO Registry Network set up with the help from the Ministry of Health and Medical Education (MOHME) and hosted by Iran University of Medical Sciences (IUMS). (from homepage)\nNote that the website uses a different identifier then the one reported in this semantic space."^^ . - . - . + "http://ecoliwiki.net/colipedia/index.php/$1:Gene"^^ . + "gene expression" . + "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=$1"^^ . + "http://repository.topdownproteomics.org/proteoforms/"^^ . + "ontology" . + "https://www.ebi.ac.uk/biostudies/studies/"^^ . + "obo" . + . + "a.39.1.1"^^ . + . + "model" . + . + "biogrid.interaction" . + "eropmoscow" . + . + . + "An organization" . + . + "^\\d{6}$"^^ . + . + "http://fermi.utmb.edu/cgi-bin/SDAP/sdap_02?dB_Type=0&allid=$1"^^ . + "genome" . + "microbiology" . + . + "https://www.uniprot.org/database/"^^ . + . + . + "https://datanator.info/reaction/"^^ . + . + . + . + "ontology" . + . + "false"^^ . + . + "An application ontology built for beta cell genomics studies."^^ . + "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1"^^ . + "The Genotype-Tissue Expression (GTEx) project aims to provide to the scientific community a resource with which to study human gene expression and regulation and its relationship to genetic variation."^^ . + . + . + "^\\d{7}$"^^ . + . + "genetics" . + . + "https://flowrepository.org/id/"^^ . + "phytozome.locus" . + . + . + "disprot" . + "c0000005"^^ . + "AY321118"^^ . + . + . +_:N7c0a181c44b94668b383a25b019a1108 "Heinrich Herre" . + . + . + "ABE-0009634"^^ . + "Fernanda Farinelli" . + . + "metatlas.reaction" . + "w.simpson@orcid.org" . + . + "UniProt Chain" . + . + . + . + "topics" . + . + . + . + . + . + . + . + "drosophilidae" . + . + . + . + "ChEMBL_ID" . + "human" . + . + "https://www.glycoepitope.jp/epitopes/"^^ . + "^\\d{7}$"^^ . + . + "oma.hog" . + "http://www.tcdb.org/search/result.php?tc="^^ . + . + . + "^\\d+$"^^ . + . + "qafeQTWIWmcC"^^ . + . + "metabolights" . + "metascience" . + "GO Chemicals" . + . + . + . + "A manually curated resource for the representation and annotation of metabolic pathways"^^ . + . + . + . + "asap" . + "AutDB" . + "chemistry" . + "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + "false"^^ . + . + . + . + . + "2"^^ . + "scop.sunid" . + . + "biomedical science" . + . + . + . + . + . + . + . + "registry" . + "http://purl.obolibrary.org/obo/BOOTSTREP_$1"^^ . + "The OpenCitations Corpus is open repository of scholarly citation data made available under a Creative Commons public domain dedication (CC0), which provides accurate bibliographic references harvested from the scholarly literature that others may freely build upon, enhance and reuse for any purpose, without restriction under copyright or database law."^^ . + . + . + . + "^MMP\\d+.\\d+$"^^ . + . + . + . + "PhosphoSite is a mammalian protein database that provides information about in vivo phosphorylation sites. This datatype refers to residue-level information, providing a information about a single modification position in a specific protein sequence."^^ . + . + "taxonomy" . + "metabolomics" . + . + . + . + . + "false"^^ . + . + . + "^\\d+$"^^ . + . + . + "^(T0\\d+|\\w{3,5})$"^^ . + "human" . + . + "lrg" . + . + . + . + . + . + . + . + . + . + . + . + . + "SIDER Drug" . + . + "Ontology for Biomedical Investigations" . + "KEGG Metagenome" . + . + . + "FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies."^^ . + "^[0-9]*$"^^ . + . + . + . + "false"^^ . + . + . + "sequence" . + "http://mods.rna.albany.edu/mods/modifications/view/$1"^^ . + . + . + . + . + . + "http://autism.mindspec.org/GeneDetail/$1"^^ . + . + . + . + . + "merops.entry" . + "gene" . + . + . + . + . + . + . + . + . + "false"^^ . + "ontology" . + "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank."^^ . + "life science" . + . + . + "drug development" . + . + "Leigh Carmody" . + . + . + . + . + . + "MESH_DESCRIPTOR_UI" . + . + "https://cropontology.org/rdf/CO_338:$1"^^ . + . + . + "protein" . + . + "RCB0002"^^ . + . + . + . + . + "Plasmodium Life Cycle" . + . + . + . + "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools."^^ . + . + . + . + . + . + . + . + "Web of Science ID (work)" . + . + . + "00000532"^^ . + . + "support@bel.bio" . + . +_:Nfdbadb6140024e31ae546873f2773b8a "LOINC Support" . + "mediadive.ingredient" . + . + . + . + . + . + "0000000"^^ . + . + . + . + "NCBI Taxonomy" . + . + "Influenza Sequence and Epitope Database" . + . + . + . + . + . + . + . + . + "https://www.ensembl.org/id/"^^ . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + "ProtClustDB" . + "https://www.storedb.org/?"^^ . + . + "https://bioregistry.io/skm:"^^ . + . + . + "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=$1"^^ . + . + "International Traditional Medicine Clinical Trial Registry" . + . + "anatomy" . + . + . + . + . + . + "false"^^ . + . + "https://bioregistry.io/cazy:"^^ . + "chemistry" . + . + . + "^CNP\\d{7}$"^^ . + . + "RL3R1_HUMAN"^^ . + "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=$1"^^ . + . + "nucc.characteristic" . + "life science" . + . + . + . + . + . + . + . + . + . + "Integrated Canine Data Commons" . + . + "edam.operation" . + . + . + "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID="^^ . + . + . + . + . + "MediaDive Ingredient" . + . + . + . + . + . + . + "false"^^ . + . + "60025709"^^ . + . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/pubmed/$1"^^ . + . + . + "http://open-services.net/ns/core#$1"^^ . + "NIST" . + . + "life science" . + . + "^(VT)?\\d{7}$"^^ . + "0000184"^^ . + . + "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1"^^ . + . + . + "The SEED;" . + . + . + "^\\d{7}$"^^ . + . + . + "kushida@biosciencedbc.jp" . + . + . + . + . + . + . + . + . + . + "dna" . + "^\\d{7}$"^^ . + "http://www.bioinfo.org/NONCODEv4/show_gene.php?id="^^ . + "75"^^ . + "https://ror.org/"^^ . + "1050"^^ . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs."^^ . + . + "chemical biology" . + . + "norine" . + . + "obo" . + "BioPortal Prefixes" . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "http://topdb.enzim.hu/?m=show&id=$1"^^ . + . + . + "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI."^^ . + "^AB\\d+$"^^ . + . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides a unique numerical ID to identify gene families, providing a display of curated hierarchical relationships between families."^^ . + "smtifahim@gmail.com" . + . + . + "life science" . + . + . + "36010371"^^ . + . + "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#"^^ . + . + . + . + "subject agnostic" . + . + "oryzabase.strain" . + "https://www.metabolome-express.org/datasetview.php?datasetid="^^ . + . + "Stemcell Knowledge and Information Portal" . + . + . + . + "Healthcare Organizations and Services Ontology" . + . + "KEGG_REACTION" . + . + "false"^^ . + . + . + . + . + "obo" . + . + . . - . - . - "true"^^ . - . - "Ontology for Nutritional Studies" . - . - "Harry Caufield" . - "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them."^^ . - . - . - . - "https://www.ebi.ac.uk/pdbsum/"^^ . - . - . - . - . - . - . - . - "interaction" . - . - . - . - . - "gwascentral.phenotype" . - . - "stefan.kuhn@dmu.ac.uk" . - . - . - . - . - "https://flybase.org/reports/FBrf$1"^^ . - "^\\d+$"^^ . - . - . - . - "schober@imbi.uni-freiburg.de" . - "https://envipath.org/package/"^^ . - "DAPK1"^^ . - . - . - . - "ontology" . - "software engineering" . - . - "https://www.ncbi.nlm.nih.gov/clinvar/submitters/"^^ . - "foodb.compound" . - . - . - _:N8d459216004f4c60a3ff474a65dbf188 . - . - "model" . - "Kids First" . - "https://pharmacodb.ca/tissues/$1"^^ . - . - . - . - . - "German Clinical Trials Register" . - "homd.taxon" . - . - . - "false"^^ . - "obo" . - . - . - "genome" . - "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno="^^ . - . - . - . + . + . + "https://mmp.sfb.uit.no/databases/marfun/#/records/$1"^^ . + . + . + "life science" . + "obo" . + . + "http://ddinter.scbdd.com/ddinter/interact/$1"^^ . + "0001290"^^ . + "ceph" . + "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" . + . + . + . + . + . + . + "RETIRED_EHDAA2" . + "Eric W. Deutsch" . + . + . + . + . + "geo" . + . + . + . + . + . + . + "^((EB\\w+)|([A-Z0-9]+\\_[A-Z0-9]+))$"^^ . + . + . + "biomedical science" . + "ensembl.plant" . + "DOAP is a project to create an XML/RDF vocabulary to describe software projects, and in particular open source projects."^^ . + . + . + "anatomy" . + "Database of Sequence Tagged Sites" . + . + . + . + "doco" . + "https://innopedia.kyinno.com/DataBase/CellLine.aspx?file=$1.pdf"^^ . + "137"^^ . + . + "0002959"^^ . + "data management" . + . + . + . + . + "1001"^^ . + . + . + . + . + . + "ctibor.skuta@img.cas.cz" . + "Ontology of standardized units"^^ . + . + "ontology" . + . + "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1"^^ . + . + . + . + . + . + "pdumdv" . + . + . + "Software Package Data Exchange License" . + . + "EDAM is a comprehensive ontology of well-established, familiar concepts that are prevalent within computational biology, bioinformatics, and bioimage informatics. EDAM includes types of data and data identifiers, data formats, operations, and topics related to data analysis in life sciences. EDAM provides a set of concepts with preferred terms and synonyms, related terms, definitions, and other information - organised into a simple and intuitive hierarchy for convenient use." . + . + . + . + "^\\d{7}$"^^ . + . + "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies."^^ . + . + . + "An issue in any public repository on GitHub."^^ . + "https://cropontology.org/rdf/CO_357:$1"^^ . + . + . + . + . + . + "ontology" . + . + "ICD9CM" . + . + . + . + "false"^^ . + "^\\d+$"^^ . + "true"^^ . + . + "eu89h" . + . + "false"^^ . + . + . + . + "2.1.1"^^ . + . + "MetaNetX reaction" . + . + "pathway" . + "hölzel" . + . + . + . + . + . + . + "false"^^ . + . + . + . + "ontology" . + "307"^^ . + . + . + . + . + . + "EDAM Ontology" . + . + . + . + . + . + . + "http://www.ubio.org/browser/details.php?namebankID=$1"^^ . . - . - . - . - "http://purl.obolibrary.org/obo/EPO_$1"^^ . - "0000184"^^ . - "https://www.arabidopsis.org/servlets/TairObject?type=locus&name="^^ . - . - "classification" . - "GCF_000005845.2"^^ . + . + . + . + . + . + . + . + "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population."^^ . + . + "dbSNP Reference SNP number" . + "NLXORG" . + . + . + "http://www.coloncanceratlas.org/search_cell_line?cell_line="^^ . + . + "http://purl.obolibrary.org/obo/CLYH_$1"^^ . + . + . + "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=$1"^^ . + . + "http://rest.bmrb.wisc.edu/bmrb/$1/html"^^ . + . + "go.chebi" . + . + "DI" . + . + "https://medlineplus.gov/genetics/condition/$1"^^ . + . + . + . + "glycomapsdb" . + "CL070"^^ . + . + . + "false"^^ . + "ExAC Variant" . + . + "Katy Börner" . + "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc="^^ . + . + "disorders" . + . + "ontology" . + . + . + "developmental biology" . + "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD"^^ . + . + "ctd.gene" . + "http://purl.obolibrary.org/obo/ECOCORE_$1"^^ . + "0000000"^^ . + "life science" . + . + . + "bioinformatics" . + . + . + "Steven E. Wilson" . + . + . + . + "true"^^ . + . + . + . + "dna" . + . + . + . + . + "classification" . + . + . + . + "smpdb" . + . + . + . + "arrayexpress.platform" . + . + . + . + . + . + . + . + "The Gene Expression Atlas (GXA) is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. This collection references experiments."^^ . + "genome" . + . + "co_320" . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . + . + "Medical Data Models" . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "40592-R001-100"^^ . + "The Ambystoma Genetic Stock Center (AGSC) maintains a breeding colony of Mexican axolotls (Ambystoma mexicanum) and distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. [from homepage]"^^ . + "https://www.ebi.ac.uk/gxa/experiments/"^^ . + . + . + "false"^^ . + "false"^^ . + . + . + . + . + . + "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=$1"^^ . + . + . + . + . + . + "gene expression" . + . + . + . + . + . + . + . + "http://edamontology.org/data_"^^ . + . + . + . + . + "ontology" . + . + . + . + "co_340" . + . + "The German Clinical Trials Register (DRKS) is the German WHO primary registry. It is competent for the registration of all patient-oriented clinical trials conducted in Germany. The DRKS now contains well over 14,000 studies. Currently, around 2,000 studies are added annually. (from website)"^^ . + "life science" . + "life science" . + . + . + . + . +_:N90875648f8524cd48ed83e7dfcff07f3 "gb-admin@ncbi.nlm.nih.gov" . + . + "^MNEST\\d+$"^^ . + . + . + "image" . + . + "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)"^^ . + "opl" . + . + . + . + . + "A application driven Epilepsy Ontology with official terms from the ILAE."^^ . + . + . + "false"^^ . + "ontology" . + . + . + "orthology" . + "https://www.ebi.ac.uk/biostudies/studies/$1"^^ . + "FlyBase Reference Report" . + . + . + "https://www.fao.org/fishery/en/species/"^^ . + . + . + "An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians."^^ . + "false"^^ . + "ontology" . + . + "domain" . + . + . + "https://publons.com/researcher/"^^ . + "Dawood B. Dudekula" . + . + . + . + . + "http://www.boldsystems.org/index.php/Taxbrowser_Taxonpage?taxid="^^ . + "http://purl.obolibrary.org/obo/MF_"^^ . + . + "IUPHAR family" . + . + . + "^([a-z]{3,5}_)?M\\d{5}$"^^ . + . + . + . + "Os01g0883800"^^ . + . + . + . + "https://cgap.nci.nih.gov/Pathways/BioCarta/$1"^^ . + . + "CIViC Assertion" . + . + . + "peroxibase" . + . + "http://purl.obolibrary.org/obo/AGRO_"^^ . + . + "http://uri.neuinfo.org/nif/nifstd/"^^ . + . + . + . + . + "bioinformatics" . + . + . + . + . + . + "Healthcare Common Procedure Coding System" . + . + . + . + "fivestars" . + "European Nucleotide Archive" . + . + . + . + . + . + . + . + . + "chemistry" . + "RDF"^^ . + . + . + . + "obo" . + . + . + "life science" . + . + "biology" . + . + . + "Literature references in Gramene"^^ . + . + . + "PubChem Classification" . + "https://mednet-communities.net/inn/db/ViewINN.aspx?i="^^ . + . + "obo" . + . + . + "^\\d+$"^^ . + . + "^\\d{7}$"^^ . + "YRC PDR" . + . + . +_:N330735ffe9774476b795effe4f9d071f "more.info@allotrope.org" . + . + . + . + . + "false"^^ . + "false"^^ . + . + . + . + "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules."^^ . + "http://purl.obolibrary.org/obo/MFOEM_"^^ . + "http://purl.obolibrary.org/obo/PORO_"^^ . + "https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?db=worm&c=Gene&l="^^ . + . + "dna" . + "expression" . + "^([a-zA-Z]+-)?\\d+(\\.\\d)?$"^^ . + . + . + "comparative genomics" . + . + . + "UniProt Isoform" . + . + . + . + "https://biopragmatics.github.io/providers/diseaseclass/$1"^^ . + . "http://purl.obolibrary.org/obo/ZFS_$1"^^ . - "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid="^^ . - . - . - . - . - . - . - "mingxun.wang@cs.ucr.edu" . - . - "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information."^^ . - "Veterinary Substances DataBase" . - . - "Web of Science ID (work)" . + . + "^\\d{7}$"^^ . + . + "false"^^ . + "^\\d{7}$"^^ . + . + . + "dbvar.variants" . + "diseases" . + "4145692"^^ . + "merops.clan" . + "obo" . + . + . + . + . + "https://mmp.sfb.uit.no/databases/mardb/#/records/"^^ . + "earth science" . + . + "COGs stands for Clusters of Orthologous Genes. The database was initially created in 1997 (Tatusov et al., PMID: 9381173) followed by several updates, most recently in 2014 (Galperin et al., PMID: 25428365). The current update includes complete genomes of 1,187 bacteria and 122 archaea that map into 1,234 genera. The new features include ~250 updated COG annotations with corresponding references and PDB links, where available; new COGs for proteins involved in CRISPR-Cas immunity, sporulation, and photosynthesis, and the lists of COGs grouped by pathways and functional systems."^^ . + "10153"^^ . + . + . + . + "An ontology of prokaryotic phenotypic and metabolic characters"^^ . + . + . + "ontology" . + "BindingDB is the first public database of protein-small molecule affinity data."^^ . + . + . + "0000001"^^ . + . + "Cellosaurus" . + . + "http://purl.obolibrary.org/obo/NCRO_$1"^^ . + . + "computer science" . + . + "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid="^^ . + . + "Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names."^^ . + "Defunct vaccine information source from the He Lab"^^ . + . + . + "environmental science" . + . + "false"^^ . + . + "ChEBI Integrated Role Ontology" . + . + "life science" . + . + "asrp" . + "1150"^^ . + "The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide sequences, can place them into multiple whole-genome alignments and contains translated genome sequences for all species."^^ . + "^(C|D)\\d{6,9}$"^^ . + "http://www.whocc.no/atcvet/atcvet_index/?code=$1"^^ . + . + "3G6A5W338E"^^ . + "^[a-zA-Z]+.+$"^^ . + . + . + . + "false"^^ . + "signor" . + . + "http://oid-info.com/get/$1"^^ . + "Swiss National Clinical Trials Portal" . + "molecular biology" . + . + "false"^^ . + . + . + . + "^G[0-9]{5}[A-Z]{2}$"^^ . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/BCO_"^^ . + . + . + . + . + . + . + "brenda.ligand" . + . + . + . + . + "File inside StoreDB"^^ . + "http://purl.obolibrary.org/obo/TO_"^^ . + "human disease" . + "0009089"^^ . + "idot" . + . + . + . + "interaction" . + . + "http://wodaklab.org/iRefWeb/interaction/show/$1"^^ . + "oba" . + . + . + "true"^^ . + . + . + "National Library of Medicine Catalog" . + "^\\S+$"^^ . + "metabolomics" . + "co_365" . + . + . + "00000443"^^ . + . + . + "false"^^ . + "0000080"^^ . + . + . + . + . + . + . + . + . + "subject agnostic" . + "https://bitbucket.org/"^^ . + "International repository of Adverse Outcome Pathways."^^ . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "Ontologies of diseases that integrates many types of data for Rattus Norvegicus, Homo Sapiens, Mus Musculus and other organisms."^^ . + "https://shop.vbc.ac.at/vdrc_store/$1.html"^^ . + . + "life science" . + "https://www.kazusa.or.jp/huge/gfpage/"^^ . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "TTHERM_00648910"^^ . + . + "environmental science" . + . +_:N7daf0920305247a2a9db552f15496084 "vlee@ebi.ac.uk" . + "Ana Rath" . + . + . + . + . + "https://civicdb.org/links/variant/"^^ . + . + . + "^[0-9]+$"^^ . + "TF0001053"^^ . + . + . + . + . + . + . + "^[0-9]{10}$"^^ . + . + . + "http://www.w3.org/ns/prov#"^^ . + . + "https://vcell.org/biomodel-$1"^^ . + "protein" . + "false"^^ . + . + "interaction" . + "fbql" . + "A translation of the full Galen ontology (from the OpenGALEN project) into the OWL description logic."^^ . + "gramene.ref" . + . + . + . + . + . + . + . + . + . + "MarDB" . + "Núria Queralt Rosinach" . + . + "National Drug Code" . + "false"^^ . + . + . + _:N7c0a181c44b94668b383a25b019a1108 . + "William Hayes" . + "EP0311"^^ . + . + . + . + . + . + "https://registry.identifiers.org/registry/$1" . + . + "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS cell model system can have the following cell categories: cell lines, primary cells, induced pluripotent stem cells, differentiated cells, and embryonic stem cells. The metadata contains information provided by each LINCS Data and Signature Generation Center (DSGC) and the association with a tissue or organ from which the cells were derived, in many cases are also associated to a disease."^^ . + . + "https://web.www.healthdatagateway.org/dataset/"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/WBbt_"^^ . + . + . + "botany" . + "plant genetics" . + . + . + "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id=$1"^^ . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "biomedical science" . + . + . + . + . + "^\\d+$"^^ . + . + "0459895"^^ . + "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID="^^ . + . + . + . + . + "https://www.ebi.ac.uk/ena/browser/view/$1"^^ . + "Cell line databases/resources"^^ . + "ontology" . + "false"^^ . + "Gene Regulation Ontology" . "https://www.scopus.com/sourceid/$1"^^ . - "ontology" . - . - . - . - . - . - . - "gene" . + . + "01027931310-01022252312"^^ . + . + "niaid.chemdb" . + . + . + . + "true"^^ . + "AOPWiki" . + . + . + . + . + "metascience" . + "http://ctdbase.org/detail.go?type=disease&db=MESH&acc=$1"^^ . + . + "Beta Cell Biology Consortium" . + "edeutsch@systemsbiology.org" . + . + . + . + "A terminology published by the American Psychiatric Association (APA) for the classification of mental disorders using a common language and standard criteria. [wikipedia]"^^ . + "pr" . + . + "^TF\\w+$"^^ . + "metanetx.reaction" . + "0000004"^^ . + . + . + . + . + "http://www.ecogene.org/gene/$1"^^ . + . + . + "false"^^ . + . + . + "GE Healthcare/Amersham Biosciences CodeLink Human Whole Genome Bioarray" . + "GlycomeDB" . + "http://purl.org/spar/cito/"^^ . + "^[0-9][A-Za-z0-9]{3}$"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . + "false"^^ . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "^\\d{7}$"^^ . + "gdsc" . + . + . + . + . + . + . + . + "Comparative Data Analysis Ontology" . + . + . + . + . + . + . + . "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. These are hierarchically classified and assigned to a Family on the basis of statistically significant similarities in amino acid sequence. Families thought to be homologous are grouped together in a Clan. This collection references peptidase families."^^ . - . - "hgnc.family" . - . - "false"^^ . - . - "http://purl.obolibrary.org/obo/CLAO_$1"^^ . - . - . - . - . - . - "Brazilian Registry of Clinical Trials" . - . - "false"^^ . - "Aclame" . - "false"^^ . + "Metabolic Network Exchange Database" . + "^\\d+$"^^ . + "massbank" . + "ctis" . + . + . + "gene" . + . + "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by cell line."^^ . + "protein" . + "http://purl.uniprot.org/annotation/$1"^^ . + . + "nif.dysfunction" . + "false"^^ . + . + . + . + . + . + . + "chembl.compound" . + . + . + . + . + "http://bioportal.bioontology.org/ontologies/MEDDRA?p=classes&conceptid=$1"^^ . + . + . + . + . + . + "metatlas" . + "Performance Summary Display Ontology (PSDO) is an application ontology about motivating information in performance summaries and the visual and textual entities that are used to communicate about performance. Motivating information includes performance comparisons and changes that motivate improvement or sustainment, such as improvement towards a goal, loss of high performer status, or the presence of a performance gap. Visual and textual entities include charts, tables, and graphs that display performance information. PSDO's domain focus is healthcare organizations that use clinical quality dashboards and feedback interventions for healthcare professionals and teams. Performance information is commonly about the quality of care and health outcomes that have been derived from clinical data using performance measures (aka metrics, process indicators, quality measures, etc). PSDO uses Basic Formal Ontology as its upper level ontology. This work is supported by the NIH, National Library of Medicine (1K01LM012528-01, 1R01LM013894-01).\n\nLandis-Lewis Z, Stansbury C, Rincón J, Gross C. Performance Summary Display Ontology: Feedback intervention content, delivery, and interpreted information. International Conference on Biomedical Ontology 2022 (ICBO 2022). https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_2172.pdf"^^ . + . + . + . + "ABC"^^ . + "ontology" . + . + . + . + . + . + "1000001"^^ . + . + . + "UniPathway Reaction" . + . + "0003463"^^ . + . + "The Japan Collection of Microorganisms (JCM) collects, catalogues, and distributes cultured microbial strains, restricted to those classified in Risk Group 1 or 2."^^ . + . + "http://purl.obolibrary.org/obo/MSIO_"^^ . + . + . + . + . + "false"^^ . + . + . + "https://purl.dataone.org/odo/SASAP_"^^ . + . + . + . + "false"^^ . + . + . + . + "^\\d+$"^^ . + "false"^^ . + "BP100000"^^ . + "supply" . + "Academic Event Ontology" . + "Animal Genome Cattle QTL" . + "bmrb" . . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - "InTextReferencePointer"^^ . - . - "leen.vandepitte@vliz.be" . - . - . - . - . - "0002989"^^ . - "false"^^ . - . - "genome" . - . - . - . - "epidemiology" . - . - . - . - . - . - "van_slyke@zfin.org" . - "b97957"^^ . - . - . - "mbaudis@me.com" . - . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "21692"^^ . - . - "true"^^ . - "ontology" . - . - . - "silvio.tosatto@unipd.it" . - "false"^^ . - . - . - . - . - "life science" . - . - "roleo" . + . + . + "hagr.genage" . + . + . + "false"^^ . + . + . + "^IPR\\d{6}$"^^ . + . + "https://www.xenbase.org/entry/"^^ . + "https://ontology.iedb.org/ontology/ONTIE_$1"^^ . + . + . + . + "TogoVar (A comprehensive Japanese genetic variation database) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them."^^ . + . + . + "^\\d+$"^^ . + . + "Melissa Haendel" . + "1"^^ . + "nando" . + "ontology" . + "DateTimeDescription"^^ . + . + . + "http://clipserve.clip.ubc.ca/topfind/proteins/$1"^^ . + . + "DrugBank Drug Category" . + "kegg.reaction" . + "agriculture" . + . + "A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations."^^ . + . + . + . + . + "^\\d{7}$"^^ . + . + . + "The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies."^^ . + . + . + "false"^^ . + . + . + "Identifier of a taxon or synonym in the Catalogue of Life"^^ . + . + . + "Electron Microscopy Data Bank" . + . + "000204"^^ . + . + "obo" . + "Edison Ong" . + . + "developmental biology" . + "vita" . + "The allele registry provides and maintains identifiers for genetic variants"^^ . + . + . + "false"^^ . + "Natural Product Activity and Species Source Database" . + . + "gramene.reference" . + . + "classification" . + . + "Yoshiharu Y. Yamamoto" . + . + . + "https://www.cameo3d.org/sp/targets/target/"^^ . + . . - "vmhgene" . - . - . - . - . - . - . - "0000106"^^ . - . - . - . - . - . - . - "http://hawaii.eagle-i.net/i/"^^ . - "histology" . - . - "false"^^ . - "molecular neuroanatomy resource" . - . - "wikidata" . - . - "https://mmp.sfb.uit.no/databases/marref/#/records/$1"^^ . - "University hospital Medical Information Network Clinical Trial Registry" . - . - . - . - . - . - . - "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1"^^ . - "bibliometrics" . - . - "lspci" . - . - . - . - . - . - . - . - "genome" . - . - . - _:N00dd48a93db94d54a9aa2b15d889c7fd . - "0000400"^^ . - . - "The interacting motif database or iMOTdb , lists interacting motifs thatare identified for all structural entries in the PDB. The conserved patterns or finger prints are identified for individual structural entries and also grouped together for reporting the common motifs shared among all superfamily members."^^ . - "C34"^^ . - "OntoBee" . - . - . - . - "false"^^ . - . - . - "epidemiology" . - . - "fbbi" . - . - "drug" . - . - . - . - . - . - "false"^^ . - "dbvar.variants" . - . - . - . - . - "reactions" . - . - . - "http://purl.obolibrary.org/obo/CL_$1"^^ . - . - . - . - . - . - "^[0-9]+(LR)?$"^^ . - "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"^^ . - . - . - "wbphenotype" . - . - . - . - . - . - . - . - "https://fairsharing.org/" . - . - . - . - . - . - . - . - . - . - . - . - "subject agnostic" . - . - "Lepidoptera Anatomy Ontology" . - . - "https://www.ebi.ac.uk/chembl/cell_line_report_card/$1"^^ . - . - . - "60316"^^ . - "false"^^ . - . - . - . - "pennsieve" . - . - "ncats.bioplanet" . - . - "STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemicals are linked to other chemicals and proteins by evidence derived from experiments, databases and the literature."^^ . - "http://purl.obolibrary.org/obo/IDOMAL_"^^ . - . - . - "regulation" . - "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons."^^ . - . - . - "false"^^ . - . - "life science" . - . - . - . - . - "deo" . - . - "^TS-\\d{4}$"^^ . - . - . - "The taxonomy contains the relationships between all living forms for which nucleic acid or protein sequence have been determined."^^ . - "^\\d+$"^^ . - . - "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. "^^ . - . - . - . - . - . - . - . - . - "SASDAX8"^^ . - . - . - "DBrodbelt@RVC.AC.UK" . - . - . - . - . - . - "false"^^ . - . - "cvdo" . - . - . - . - "35742"^^ . - . - . - "AOPWiki (Stressor)" . - . - "false"^^ . - . - . - . - "Colorectal Cancer Atlas" . - "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - . - . - . - . - "http://purl.obolibrary.org/obo/VTO_"^^ . - . - _:Nf42f1ec046d341cc9a6884792076b13b . - "^\\d{8}$"^^ . - . - "false"^^ . - . - "http://func.mshri.on.ca/yeast/genes/list_functional_scores/$1"^^ . - . - "life science" . -_:N8ef12b59b027479eb344e1d2a05132be "tim.vandermeersch@gmail.com" . - . - "ProtoNet ProteinCard" . - . - "KEGG DRUG" . - "http://purl.obolibrary.org/obo/CLO_$1"^^ . - . - . - . - . - . - . - . - . - . - . - "A structured controlled vocabulary for the anatomy of fungi."^^ . - . - . - "P12345"^^ . - . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - . - . - . - . - . - . - . - "redfly" . - . - . - . - . - "true"^^ . - . - . - . - . + . + . + "http://purl.obolibrary.org/obo/UPHENO_"^^ . + . + . + . + "false"^^ . + "ontology" . + "http://www.kegg.jp/entry/$1"^^ . + . + . + "developmental biology" . + . + "interaction" . + . + . + . + "ACHN"^^ . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OARCS_"^^ . + "bioinformatics" . + . + . + . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + "^\\d+$"^^ . + . + "Jennifer R Smith" . + "http://purl.enanomapper.org/onto/ENM_$1"^^ . + . + . + . + . + "5277619"^^ . + "subject agnostic" . + . + "false"^^ . + . + . + "^\\d+$"^^ . + "^\\w+$"^^ . + "false"^^ . + . + . + "life science" . + "https://www.cancerrxgene.org/translation/Drug/"^^ . + . + "systems biology" . + . + . + . + "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information."^^ . + . + . + . + . + . + "obo" . + . + . + "false"^^ . + . + . + . + . + . + "SMIDs (Small Molecule Identifiers) represent gene-style identifiers for small molecules newly identified in C. elegans and other nematodes. SMIDs aim to make life easier for describing biogenic small molecules in metabolomic and genomic applications. "^^ . + . + . + "gene expression" . + "microbiology" . + . + . + "frim1"^^ . + . + "http://emmo.info/emmo#EMMO_"^^ . + . + "Cell line databases/resources"^^ . + . + . + . + . + "gobp" . + . + . + . + . + . + . + "TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here.."^^ . + "A0118748"^^ . + . + . + . + "http://purl.org/vocab/frbr/core#"^^ . + . + . + "life science" . + . + "A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form."^^ . + . + "^[A-Za-z-0-9_]+(\\@)?$"^^ . + "551115"^^ . + "Chemical Analysis Ontology" . + "0000003"^^ . + . + . + . + . + . + . + . + "Philippe.Lemercier@sib.swiss" . + "Ontology Concept Identifiers" . + . + "E-MTAB-2037"^^ . + . + "sperm" . + . + "false"^^ . + . + "Mouse Brain Atlas" . + . + . + . + . + . + "vasilevs@ohsu.edu" . + "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries."^^ . + "false"^^ . + . + "AY209920"^^ . + . + "true"^^ . + . + "jax" . + "http://purl.obolibrary.org/obo/PD_ST_"^^ . + . + "genome" . + . + "https://www.ebi.ac.uk/metagenomics/projects/"^^ . + . + . + "ENSG00000026508"^^ . + "protein" . + . + "protein" . + . + . + . + . + . + "1100107"^^ . + "E-MEXP-1712"^^ . + . + "https://www.ncbi.nlm.nih.gov/sra/"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/ARO_$1"^^ . + . + "ontology" . + "false"^^ . + "12"^^ . + "genpept" . + . + "taxid" . + . + "UK Universities and Colleges Admissions Service" . + "bioinformatics" . + "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID="^^ . + "Zebrafish Experimental Conditions Ontology" . + . + "ontology" . + . + . + . + "http://bacmap.wishartlab.com/organisms/"^^ . + . + . + . + . + "An ontology to describe entities related to cardiovascular diseases"^^ . + . + "IMGT, the international ImMunoGeneTics project, is a collection of high-quality integrated databases specialising in Immunoglobulins, T cell receptors and the Major Histocompatibility Complex (MHC) of all vertebrate species. IMGT/LIGM is a comprehensive database of fully annotated sequences of Immunoglobulins and T cell receptors from human and other vertebrates."^^ . + . + . + "https://flybrain-ndb.virtualflybrain.org/fmi/xsl/browserecord.xsl@-lay=NDB&Accession+number.op=eq&Accession+number=$1&-find=-find.html"^^ . + "^\\d+$"^^ . + . + "http://www.jcvi.org/charprotdb/index.cgi/view/$1"^^ . + . + . + "^(G|P|U|C|S)\\d{5}$"^^ . + . + . + . + "^\\d+$"^^ . . - . - "BioSimulations is an open repository of simulation projects, including simulation experiments, their results, and data visualizations of their results. BioSimulations supports a broad range of model languages, modeling frameworks, simulation algorithms, and simulation software tools."^^ . - . - . - "preclinical studies" . - "The Alan Wood’s Pesticides is a compendium of pesticides which contain nomenclature data sheets for more than 1700 different active ingredients."^^ . - . - . - . - . - . - . - . - "protein" . - . - . - . - . - . - . - . - . - . - "sedml.format" . - . - . - . - "functional genomics" . + . + . + "SP_DI" . + . + . + "The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative."^^ . + "0000449"^^ . + "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q="^^ . + . + "NAD%20biosynthesis"^^ . + . + . + "lter" . + . + . + . + "metabolomics" . + "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . + . + . + . + "^[A-Za-z]+$"^^ . + . + "The Bioregistry's meta-registry"^^ . + . + "Identifiers for relationships between proteins and complexes, along with their type and provenance"^^ . + . + "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number."^^ . + "pancreas" . + . + . + "https://prosite.expasy.org/"^^ . + . + . + . + "http://zfin.org/"^^ . + "medicine" . + "anatomy" . + . + . + "structure" . + "life science" . + "FAIR* Reviews Ontology" . + "true"^^ . + . + . + . + "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets."^^ . + . + . + "false"^^ . + "cordis.article" . + "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . + "https://www.genedb.org/gene/$1"^^ . + . + "false"^^ . + . + . + "genome" . + "obo" . + . + "Conference Ontology" . + "https://fcs-free.org/fcs-database?$1"^^ . + . + "http://purl.obolibrary.org/obo/SWO_$1"^^ . + . + "Gene"^^ . + . + "Add"^^ . + "biodiversity" . + "85163"^^ . + "Data Commons" . + . + "false"^^ . + . + "NCBI_gi" . + "https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=cgencodes#SG$1"^^ . + . + . + . + "http://iflastandards.info/ns/fr/frbr/frbrer/"^^ . + . + . + . + . + . + . + . + . + . + . + . + "A resource for exploring metabolism, starting with a set of of community-curated genome-scale metabolic models of human and model organisms, enriched with pathway maps and other tools for easy browsing and analysis."^^ . + "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names."^^ . + . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "false"^^ . "life science" . - . - "proteomics" . - . - "^[a-zA-Z_][a-zA-Z0-9\\-_]+$"^^ . - . - . - "genetics" . - . - . - "false"^^ . - . - . - . - "blast" . - . - . - . - "physiology" . - . - "http://www.kegg.jp/entry/$1"^^ . - . - . - . - . - . - "56"^^ . - . - "false"^^ . - "0000055"^^ . - "Molecular Signatures Database" . - . - . - "^PRI\\d*$"^^ . - . - "https://pb.apf.edu.au/phenbank/strain.html?id=$1"^^ . - "structural biology" . - "Degradome Database" . - . - . - "The gEAR portal is a website for visualization and analysis of multi-omic data both in public and private domains."^^ . - "http://purl.obolibrary.org/obo/PSO_"^^ . - . - "chemical in the database supplied by Pesticide Action Network North America"^^ . - . - . - "https://www.kegg.jp/entry/"^^ . - "embryo" . - "agsd" . - . - . - "https://idr.openmicroscopy.org/search/?query=Name:idr"^^ . - "reaction" . - "structure" . - "nlx.anat" . - . - . - . - "DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, pharmacologic action."^^ . - "https://assets.nemoarchive.org/"^^ . - . - "false"^^ . - . - . - "false"^^ . - . - . - . - . - . - "true"^^ . - . - "interaction" . - "US4145692"^^ . - . - "idog" . - "ontology" . - . - . - . - . - "false"^^ . - . - . - . - "lgic" . - "000000021"^^ . - . - "project management" . - . - . - . - "bibliography" . - . - "NCBI Taxonomy" . - "Vir-Mir db" . - . - "fossilworks.journal" . - . - . - . - . - . - "ricenetdb.reaction" . - . - . - . - . - . - "BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests."^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - "Thai Clinical Trials Registry" . - . - . - . - . -_:Na8a26c21d620429599673f6ff0542396 "InterPro Help" . - "false"^^ . - . - . - . - . - . - "dr.sebastian.koehler@gmail.com" . - . - . - "0000404"^^ . - . - . - . - _:N50a2361590df4817930385e1bb2bde35 . - . -_:Ndeffa5ef68f746f4b3e6b8b05bb2a287 "FALDO group" . - . - . - . - "biomedical science" . - . - "ontology" . -_:N3b57495f01bb4011887043a296cc3f83 "af8d@nih.gov" . - "Gainesville Core Ontology" . - "false"^^ . - "mouse strain" . - "CIViC Assertion" . - . - . - "Provides structured controlled vocabularies for the annotation of expressed sequences with respect to anatomical system, cell type, developmental stage, experimental technique, microarray platform, pathology, pooling, tissue preparation and treatment."^^ . - . - . - . - "database" . - "Lorenz Reimer" . - . - . - . - . - "molecules" . - "echinobase" . - "ontology" . - . - . - . - . - "false"^^ . - "meddra" . - . - "1001"^^ . - . - . - . - . - "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . - "obo" . - . - . - . - . - . - "https://rism.online/"^^ . - . - "classification" . - "^\\d{5}$"^^ . - . - . - "^\\d+$"^^ . - . - "genomics" . - . - . - . - . - "SNOWMEDCT" . - "The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry Site) segments. IRES regions are known to attract the eukaryotic ribosomal translation initiation complex and thus promote translation initiation independently of the presence of the commonly utilized 5'-terminal 7mG cap structure."^^ . - . - "https://data.4dnucleome.org/experiment-set-replicates/"^^ . - "obo" . - . - . - "MESHA" . - "Chlamydia"^^ . - "MESH_DESCRIPTOR_UI" . - . - . - . - . - "Mammalia Polymorphism Database" . - . - . - "LexicalMatching"^^ . - "https://world-2dpage.expasy.org/repository/$1"^^ . - "Jie Zheng" . - . - . - . - "The antimicrobial peptide database (APD) provides information on anticancer, antiviral, antifungal and antibacterial peptides."^^ . - "genome" . - . -_:N1e1af9a9bb40494590a2f364cd4896a2 "helpdesk@cropontology-curationtool.org" . - "nb2018006591"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "https://www.wikidata.org/wiki/Property:"^^ . - "The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored."^^ . - "0000339"^^ . - . - "http://vegbank.org/cite/"^^ . - "disease" . - "protein" . - . - "life science" . - _:Nea597ba9607343dfad7d0285b1773c07 . - "anatomy" . - . + . + . + "http://purl.obolibrary.org/obo/CHEBI_$1"^^ . + "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/"^^ . + . + . + "https://aopwiki.org/aops/"^^ . + . + . + . + . + . + . + . + . + "BacMap Map" . + "pmdb" . + . + . + "The REPRODUCE-ME ontology is an extension of the PROV-O and the P-Plan ontology to describe a complete path of a scientific experiment. It expresses the REPRODUCE-ME Data Model using the OWL2 Web Ontology Language (OWL2). It provides a set of classes and properties to represent a scientific experiment including its computational and non-computational steps to track the provenance of results. It describes a complete path of a scientific experiment considering the use-case of biological imaging and microscopy experiments, computational experiments, including Jupyter notebooks and scripts. It describes an experiment and its data, agents, activities, plans, steps, variables, instruments, materials, and settings required for its reproducibility."^^ . + . + "https://glytoucan.org/Structures/Glycans/$1"^^ . + "false"^^ . + . + "http://codes.iarc.fr/search.php?cx=009987501641899931167%3A2_7lsevqpdm&cof=FORID%3A9&ie=UTF-8&ie=ISO-8859-1&oe=ISO-8859-1&sa=&q=$1"^^ . + . + . + . + "^\\d+$"^^ . + "anatomy" . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + "^\\d{7}$"^^ . . - . - _:N324112f3c63245ab8f6b46586714a1c9 . - . - . - . - "chemistry" . - "^\\d+$"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - "interaction" . - . - "C. elegans Gross Anatomy Ontology" . - . - "ontology" . - . - "International Standard Name Identifier" . - . - . - . - . - . - "false"^^ . - "Current Procedural Terminology, more commonly known as CPT®, refers to a medical code set created and maintained by the American Medical Association — and used by physicians, allied health professionals, nonphysician practitioners, hospitals, outpatient facilities, and laboratories to represent the services and procedures they perform. No provider of outpatient services gets paid without reporting the proper CPT® codes. [Description taken from this site](https://www.aapc.com/codes/cpt-codes-range/)]"^^ . - . - "false"^^ . - . - . - . - "taxonomy" . - "false"^^ . - . - . - . - "^\\d+$"^^ . + . + "62"^^ . + . + "obo" . + "true"^^ . + "JSTOR (Journal Storage) is a digital library containing digital versions of historical academic journals, as well as books, pamphlets and current issues of journals. Some public domain content is free to access, while other articles require registration."^^ . + . + . + . + "https://www.ncbi.nlm.nih.gov/nuccore/$1"^^ . + . + . + "balhoff@renci.org" . + "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes."^^ . + . + "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$"^^ . + "ontology" . + . + "false"^^ . + . + "614"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Ontology of Prokaryotic Phenotypic and Metabolic Characters" . + . + "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all."^^ . + "FooDB compound" . + . + "life science" . + . + . + . + . + "preclinical studies" . + . + . + "http://foodb.ca/compounds/"^^ . + "false"^^ . + "obo" . + . + . + "false"^^ . + . + "ped" . + "drug repositioning" . + "dct" . + "scomp" . "pathology" . - . - . - . - . - . - "false"^^ . - . - "false"^^ . - "http://www.scopus.com/record/display.url?origin=inward&eid="^^ . - . - "molecular biology" . - . - . - "structure" . - "01001"^^ . - . - . - . - . - . - "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." . - "clao" . - . - . - "true"^^ . - "false"^^ . - . - . - "cosmic" . - "ontoneo" . - . - . - . - . - "biology" . - "https://www.ncbi.nlm.nih.gov/gene/$1"^^ . - . - . - . - "http://gmd.mpimp-golm.mpg.de/Spectrums/$1"^^ . - . - . - . - . - "false"^^ . - "genotype" . - . - . - "^B\\d+$"^^ . - . - . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_subcell_"^^ . - "scdo" . - . - . -_:N2c447aacef584c2594724c5666a30b84 "Animal Diversity Web technical staff" . - . - "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=$1"^^ . - . - . - "botany" . - . - . - . - "https://www.glycoepitope.jp/epitopes/$1"^^ . - . - . - . - . - "false"^^ . - . - . - . - "metabolite" . - . - . - . - "true"^^ . - "^SAM[NED](\\w)?\\d+$"^^ . - . - "nlx.org" . - . - . - "http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=$1"^^ . - . - . - "co_341" . - "gene" . - "Applied Biological Materials cell line products" . - "Collection of many cell lines derived from human and other various animals, preserved by the RIKEN BioResource Research Center."^^ . - "scpd" . - . - . - . - . - "Google Books" . - . - . - "computational biology" . - . - "ontology" . - "synthetic biology" . - "8000221"^^ . - . - "botany" . - "life science" . - . - . - . - . - "false"^^ . - "^osa-miR\\d{3,5}[a-z]{0,1}$"^^ . - . - "http://www.ontology-of-units-of-measure.org/resource/om-2/"^^ . - . - "iresite" . - . - . - . - . - "https://data.4dnucleome.org/biosources/"^^ . - "wormbase" . - "Donny Winston" . - "SNOMEDCTCT_2019_03_01" . - "http://purl.org/spar/cito/"^^ . - . - "http://purl.obolibrary.org/obo/$1"^^ . - . - . - . - . - . - . - . - "developmental biology" . - "ICEberg integrative and conjugative element" . - "^PAp[0-9]{8}$"^^ . - . - . - "559"^^ . - . - "false"^^ . - "http://mycobrowser.epfl.ch/marinosearch.php?gene+name="^^ . - . - "Human Unidentified Gene-Encoded" . - "orcid" . - "The IMGT/PRIMER-DB database provides standardized information on oligonucleotides or primers of the immunoglobulins (IG) and T cell receptors (TR)."^^ . - "ontology" . - . - "https://www.metanetx.org/chem_info/"^^ . - "PRJDB3"^^ . - . - "thermofisher" . - "phylogenetics" . - . - "Bio-MINDER Tissue Database" . - . - . - . - "http://zinc15.docking.org/substances/$1"^^ . - . - . - "taxonomy" . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/MC_"^^ . - "An alternative or synonymous prefix" . - "Platynereis stage ontology" . - "http://purl.obolibrary.org/obo/PAO_$1"^^ . - . - "Allergy"^^ . - . - "uo" . - . - . - . - "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours."^^ . - "^\\d{7}$"^^ . - "ppo" . - "LGCEDe-S-000002244"^^ . - . - "ontology" . - . - . - . - . - . - . - . - "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . - . - . - "https://flybase.org/reports/"^^ . - . - . - "SNOMEDCT_US_2021_09_01" . - "Jennifer C. Girón" . - "false"^^ . - "phosphopoint.kinase" . - . - . - . - "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes."^^ . - "mathematics" . - "sharkipedia.trend" . - . - . - . - . - . - "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No="^^ . - . - "Reaxys" . - . - . - "^\\d+$"^^ . - "0101963"^^ . - "rx00408"^^ . - . - . - "swisslipids" . - "uniprot.var" . - . - . - . - . - "empiar" . - . - "90000018"^^ . - . - . - "http://www.weizmann.ac.il/molgen/loqate/gene/view/"^^ . - . - . - . - . - "Identifiers.org Ontology" . - . - "https://www.thermofisher.com/antibody/product/"^^ . - . - . - . - . - . - "ontology" . - . - . - . - . - . - . - . - "Epidemiology Ontology" . - . - "https://pypi.org/project/"^^ . - . - . - . - . - . - . - . - . - . - . - . - "https://www.storedb.org/?"^^ . - "virus" . - "reagents" . - . - . - . - . - . - . - "diapriid@gmail.com" . - . - . - . - "topics" . - . - . - . - . - . - . - "medicine" . - . - . - . - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=$1"^^ . - . - . - "http://www.w3.org/ns/dcat#"^^ . - . - "sider.drug" . - . - "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$"^^ . - "The Ontology for General Medical Science (OGMS) is an ontology of entities involved in a clinical encounter. OGMS includes very general terms that are used across medical disciplines, including: 'disease', 'disorder', 'disease course', 'diagnosis', 'patient', and 'healthcare provider'. OGMS uses the Basic Formal Ontology (BFO) as an upper-level ontology. The scope of OGMS is restricted to humans, but many terms can be applied to a variety of organisms. OGMS provides a formal theory of disease that can be further elaborated by specific disease ontologies. This theory is implemented using OWL-DL and OBO Relation Ontology relations and is available in OWL and OBO formats.\n\nOGMS is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX) and the Signs, Symptoms, and Findings Workshop(Milan, Italy). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology."^^ . - . - "false"^^ . - . - "false"^^ . - . - . - . - "obo" . - . - "false"^^ . - . - "http://ensembl.org/glossary/ENSGLOSSARY_"^^ . - . - "mmmp:biomaps" . - "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org"^^ . - . - . - "post-translational modification" . - . - . - "false"^^ . - "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. In the genomics era, while gene expression, genetic association, and network analysis provide unprecedented means to decode the genetic basis of complex phenotypes, it is important to recognize the possible effects genetic progress in one trait can have on other traits. This database is designed to collect all published livestock genetic/phenotypic trait correlation data, aimed at facilitating genetic network analysis or systems biology studies."^^ . - . - . - . - "false"^^ . - . - "AAindex" . - "false"^^ . - . - "false"^^ . - "https://www.ncbi.nlm.nih.gov/nucleotide/"^^ . - "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies."^^ . - "hancestro" . - . - . - . - "cvx" . - . - "4DN" . - . - "^\\d+$"^^ . - "SEED Compound" . - . - "The Amphioxus Development and Anatomy Ontology" . - . - . - . - "https://cropontology.org/rdf/CO_339:$1"^^ . - . - . - "Richard Scheuermann" . - "^PACTR\\d+$"^^ . - . - . - "classification" . - . - . - "4DNESWX1J3QU"^^ . - . - "BioContext" . - . - . - "false"^^ . - "true"^^ . - "bgee.family" . - . - . - . - "http://purl.obolibrary.org/obo/ExO_"^^ . + "MIMIC-III is a dataset comprising health-related data associated with over 40,000 patients who stayed in critical care units of the Beth Israel Deaconess Medical Center between 2001 and 2012"^^ . + . + "Common Bean ontology" . + "Nicolas Le Novère" . + . + . + . + "UMLSSG" . + "bioregistry.registry" . + . + "obo" . + . + . + . + . + "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."^^ . + "brain regions" . + . + "https://bioportal.bioontology.org/ontologies/$1" . + . + "emdb" . + "ontology and terminology" . + . + . + . + "^\\d+$"^^ . + . + . + "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=$1"^^ . + "https://smid-db.org/smid/$1"^^ . + "idr" . + "Cell line collections (Providers)"^^ . + "Suggested Ontology for Pharmacogenomics" . + "co_359" . + . + . + . + . + . + . + . + . + . + . + . + . + "https://cellmodelpassports.sanger.ac.uk/passports/$1"^^ . + . + . + . + "^\\d{7,8}$"^^ . + . + . + . + "A repository for high-quality gene models produced by the manual annotation of vertebrate genomes."^^ . + . + . + . + "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name="^^ . + . + "The main contact person for a registry" . + "false"^^ . + "false"^^ . + . + . + "https://www.wwpdb.org/pdb?id=$1"^^ . + . + "Drug Target Ontology" . + . + "Gene Ontology Annotation Database" . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=r&reacID=$1"^^ . + . + . + . + . + "http://www.w3.org/2002/07/owl#$1"^^ . + . + "engelsta@ohsu.edu" . + . + . +_:N8723ec61d20e406aa41e6b7e1d2ee765 "PhenX Admin" . + . + "has identifier space owner" . + . + "co_345" . + . + . + . + "life science" . + "pharmacogenomics" . + "16S rRNA gene database" . + . + . + . + . + . + . + . + "^\\w{5}\\.\\d{2}\\..*$"^^ . + "William Hogan" . + "https://www.ncbi.nlm.nih.gov/books/"^^ . + . . - . - "ettensohn@cmu.edu" . - "https://www.genecards.org/cgi-bin/carddisp.pl?gene=$1"^^ . - . - . - "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . - "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."^^ . - . - "https://www.ebi.ac.uk/pdbe/entry/emdb/"^^ . - "0024"^^ . - "pgdso" . - "false"^^ . - . - . - . - . - . - . - . - . - "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa"^^ . - . - . - "The pattern for identifiers in the given resource" . - "Kidney and Urinary Pathway Ontology" . - . - . - . - . - . - "HGVM15354"^^ . - . - . - . - . - "EcoPortal" . - . - . - . - . - "obo" . - "life science" . - . - . "gene" . - . - . - "^\\d+$"^^ . - . - . - "controlled vocabularies" . - "CIP - potato ontology - december 2018"^^ . - . - . - . - . - "https://id.loc.gov/authorities/"^^ . - . - "false"^^ . - . - "Ontology of Arthropod Circulatory Systems" . - . - . - "phosphopoint.protein" . - "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/"^^ . - "India Clinical Trials Registry" . - "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=IPI&id=$1&format=default"^^ . - . - "omics" . - "CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession."^^ . - . - " Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest. Enzyme-catalyzed and spontaneously occurring reactions are curated from peer-reviewed literature and represented in a computationally tractable manner by using the ChEBI (Chemical Entities of Biological Interest) ontology to describe reaction participants.\n\nRhea covers the reactions described by the IUBMB Enzyme Nomenclature as well as many additional reactions and can be used for enzyme annotation, genome-scale metabolic modeling and omics-related analyses. Rhea is the standard for enzyme and transporter annotation in UniProtKB."^^ . - "0002066"^^ . - . - "Experimental condition ontology" . - . - . - . - . - "SMP0000219"^^ . - . - "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1"^^ . - . - "Cell Ontology" . - . - . - . - "life science" . - "proteomicsdb.protein" . - . - "false"^^ . - "data model" . - "7123"^^ . - "Terminology of Anatomy of Human Histology" . - . - . - . - . - . - . - "sperm" . - "geo" . - "Pesticide Properties DataBase" . - "Common Science and Technology Resources" . - . - . - "Human Developmental Stages" . - . - . - . - . - "Mechanism, Annotation and Classification in Enzymes" . - . - . - . - "https://mmp.sfb.uit.no/databases/mardb/#/records/$1"^^ . - "runBioSimulations" . - . - . - "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms."^^ . - . - . - . - . - . - . - . - _:Na8a26c21d620429599673f6ff0542396 . - . - "https://bioregistry.io/iceberg.ime:"^^ . - . - . - "clinicaltrials" . - "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID="^^ . - . - "false"^^ . - "nif.dysfunction" . - . - . - "false"^^ . - . - . - "https://discover.pennsieve.io/package/"^^ . - . - . - . - "data quality" . - "Confident makes descriptive metadata on conferences and other formats of scientific events permanently accessible in a high quality through automated processes and scientific data curating."^^ . -_:N61e212a4682e4665ab4cc6dd850a2aa6 "Jonathan Bard" . - . - . - "https://dgrc.bio.indiana.edu/product/View?product=$1"^^ . - . - . - . - "^Gm\\d+$"^^ . - . - . - "^[1-9]\\d*$"^^ . - . - "https://cropontology.org/rdf/CO_356:"^^ . - . - "The BioPortal is a less stringent registry of biomedical ontologies than the OBO Foundry" . - "biology" . - "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid=$1"^^ . - "http://www.unimod.org/modifications_view.php?editid1=$1"^^ . - "false"^^ . - . - "UMLS_CUI" . - . - "This namespace is about Neuroscience Multi-Omic data, specially focused on that data generated from the BRAIN Initiative and related brain research projects."^^ . - . - . - . - . - . - . - "^NCT\\d{8}$"^^ . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . - . - "obo" . - "oridb.sacch" . - "biocarta.pathway" . - . - "clustering" . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=$1"^^ . - "OArCS is an ontology describing the Arthropod ciruclatory system."^^ . - . - "smiles" . - "false"^^ . - . - . - . - "life science" . - . - . - "datacite" . - "http://purl.org/phylo/treebase/phylows/study/$1?format=html"^^ . - . - . - . - . - . - "EcoLexicon represents the conceptual structure of the specialized domain of the Environment in the form of a visual thesaurus. This thesaurus has been elaborated according to the theoretical premises of Frame-Based Terminology."^^ . - "KG09531"^^ . - "gene" . - . - . - . - . - "ProDom is a database of protein domain families generated from the global comparison of all available protein sequences."^^ . - . - "https://bacdive.dsmz.de/strain/"^^ . - "A vocabulary for cattle, chicken, horse, pig, and sheep breeds."^^ . - . - "regulation" . - "^\\d{7}$"^^ . - . - . - "The Drug Ontology" . - "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Protein' view."^^ . - "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-$1"^^ . - . - . - . - "CHEBI"^^ . - . - . - . - . - "SNOWMEDCT_US_2018_03_01" . - . - "false"^^ . - "http://data.crossref.org/fundingdata/funder/10.13039/$1"^^ . - . - . - . - "BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories."^^ . - "false"^^ . - "swissregulon" . - . - . - . - . - . - . - . - . - "https://archive.softwareheritage.org/browse/swh:$1"^^ . - . - . - "^\\d{7}$"^^ . - "ega.study" . - "SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules."^^ . - . - . - . - . - . - . - "An open, community-curated knowledgebase that contains several properties corresponding to resources listed in other biomedical registries." . - . - . - "signor" . - "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."^^ . - . - "C138986"^^ . - "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions."^^ . - . - "biology" . - "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=$1"^^ . - . - . - "^(imp|gen)\\d{5}$"^^ . - . - . - . - "false"^^ . - "^((BIOMD|MODEL)\\d{10})|(BMID\\d{12})$"^^ . - . - . - . - "13"^^ . - . - . - . - . - . - "https://bioregistry.io/metaregistry/ncbi/$1"^^ . - . - . - . - . - "clinvar.variant" . - . - "TIGR protein families" . - . - "Scientific Information Retrieval and Exchange Network" . - "146421"^^ . - . - "http://purl.obolibrary.org/obo/DERMO_"^^ . - . - . - "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein."^^ . - . - . - . - "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName="^^ . - "splicenest" . - "habronattus" . - "BEI Resources" . - . - . - . - . - . - "5046"^^ . - "Nathan Edwards" . - . - "erv" . - . - . - . - . - "rna" . - . - "https://www.bgee.org/gene/$1"^^ . - . - "false"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - . - . - "life science" . - . - . - "life science" . - . - . - . - . - . - . - "https://pubchem.ncbi.nlm.nih.gov/cell/"^^ . - . - . - "http://aims.fao.org/aos/agrovoc/c_"^^ . - . - "false"^^ . - "genomics" . - . - . - . - . - . - . - . - "ontology" . - . - "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances."^^ . - "biomedical science" . - . - . - "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps."^^ . - "https://www.uniprot.org/database/$1"^^ . - "http://www.pseudomonas.com/feature/show/?locus_tag=$1"^^ . - "Sweet Potato ontology" . - . - . - . - . - "http://purl.obolibrary.org/obo/LEPAO_"^^ . - "https://www.uniprot.org/proteomes/$1"^^ . - . - . - . - . - "dna" . - "http://purl.org/pav/"^^ . - . - . - "https://cropontology.org/rdf/CO_340:"^^ . - "^\\d+$"^^ . - "alleles" . - . - . - "https://www.metanetx.org/chem_info/$1"^^ . + . + . + "http://purl.obolibrary.org/obo/ECTO_$1"^^ . + . + . + . + . + . + "GCST000035"^^ . + . + . + . + . + "voc4cat" . + "1000100"^^ . + . + . + . + "plant genetics" . + . + "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name="^^ . + . + . + . + "metabolomics" . + "https://www.ebi.ac.uk/biosamples/sample/$1"^^ . + . + . + . + "^[0-9]+$"^^ . + "PROV Namespace" . + . + . + . + "REBASE is a comprehensive database of information about restriction enzymes, DNA methyltransferases and related proteins involved in the biological process of restriction-modification (R-M). It contains fully referenced information about recognition and cleavage sites, isoschizomers, neoschizomers, commercial availability, methylation sensitivity, crystal and sequence data."^^ . + "http://www.yeastract.com/view.php?existing=locus&orfname="^^ . + . + . + . + "326705068"^^ . + . + . + "false"^^ . + "https://jrct.niph.go.jp/en-latest-detail/"^^ . + . + . + "0000006"^^ . + . + "clyh" . + "^\\d{7}$"^^ . + "molecular microbiology" . + "phenotype" . + "skm" . + . + "The Topology Data Bank of Transmembrane Proteins (TOPDB) is a collection of transmembrane protein datasets containing experimentally derived topology information. It contains information gathered from the literature and from public databases availableon transmembrane proteins. Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases."^^ . + . + "CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world."^^ . + . + . + . + "817732"^^ . + . + "https://biopragmatics.github.io/providers/sdis/$1"^^ . + . + . + . + "Sabine Oesterle" . + . + . + . + "SMP" . + . + . + "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + "data governance" . + . + . + . + . + "genomics" . + "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with protist genomes."^^ . + . + . + . + . + . + . + "obo" . + . + . + . + . + "http://lincsportal.ccs.miami.edu/cells/#/view/"^^ . + . + . + . + . + "785"^^ . + "aBq"^^ . + . + . + "https://radlex.org/RID/"^^ . + "^\\d{5}$"^^ . + . + "^\\d{7}$"^^ . + "The UniProt Knowledgebase (UniProtKB) is a comprehensive resource for protein sequence and functional information with extensive cross-references to more than 120 external databases. Besides amino acid sequence and a description, it also provides taxonomic data and citation information."^^ . + "http://purl.obolibrary.org/obo/TGMA_"^^ . + "metabolites" . + . + "1426686"^^ . + "dna" . + . + . + "http://www.allergome.org/script/dettaglio.php?id_molecule=$1"^^ . + . + . + . + . + "false"^^ . + . + "false"^^ . + . + . + . + "^[A-Za-z0-9_-]+$"^^ . + "datf" . . - "ontology" . - "genetics" . - . - . - . - . - . - . - . - "http://swissregulon.unibas.ch/query/$1"^^ . - . - "LSM-6306"^^ . - . - . - "SPIKE (Signaling Pathways Integrated Knowledge Engine) is a repository that can store, organise and allow retrieval of pathway information in a way that will be useful for the research community. The database currently focuses primarily on pathways describing DNA damage response, cell cycle, programmed cell death and hearing related pathways. Pathways are regularly updated, and additional pathways are gradually added. The complete database and the individual maps are freely exportable in several formats. This collection references pathway maps."^^ . - . - . - . - "doqcs.model" . - "qudt" . - "http://edamontology.org/data_$1" . - . - "ontology" . - . - . - . - . - . - . - . - "DTXSID2021028"^^ . - . - . - "gdc" . - "https://www.atcc.org/products/$1"^^ . - . - . - . - "NLXCELL" . - . - . - "^AT[1-5]G\\d{5}(\\.\\d+)?$"^^ . - . - . - . - . - . - . - _:Ndc3b3940e66846f99762ce35a820697b . - . - . - . - "molecular microbiology" . - . - . - "pancreatic islet development" . - . - . - . - . - . - "iobc" . - . - "ontology" . - "https://arxiv.org/abs/$1"^^ . - . - . - "WikiPathways Ontology" . - . - . - . - "^(5?)\\d{7}$"^^ . - "http://purl.obolibrary.org/obo/DOID_"^^ . - . - "epidemiology" . - . - . - . - "Lutz Fischer" . - . - . -_:N9ff3b0b9e9be44da9da4229138535296 "helpdesk@cropontology-curationtool.org" . - "Simplified molecular-input line-entry system" . - "knockout" . - "http://www.molbase.com/en/index.php?app=search&search_keyword=$1"^^ . + "small molecule" . + "0400109"^^ . + "enzyme" . + "http://oid-info.com/get/$1" . + . + "https://www.gtexportal.org/home/gene/$1"^^ . + . + "false"^^ . + . + "Database of protein-protein complexes" . + . + . + . + . + "SNHG3"^^ . + . + "DrugBank is a web-enabled database containing comprehensive molecular information about drugs, their mechanisms, their interactions and their targets."^^ . + "false"^^ . + "27267"^^ . + "classification" . + . + . + . + "ontology" . + . + "brenda" . + . + . + "registry" . + "http://www.nmpdr.org/FIG/wiki/rest.cgi/NmpdrPlugin/SeedViewer?page=Annotation;feature="^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . + "false"^^ . + . + "false"^^ . + . + . + . + "JCOIN" . + . + . + . + "knowledge and information systems" . + "^\\d+$"^^ . + . + "The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database."^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Hazardous Substances Data Bank" . + . + "0000634"^^ . + "50583"^^ . + "http://purl.org/spar/scoro/$1"^^ . + "CHEBIID" . + "Ontology for Modeling and Representation of Social Entities" . + . + . + . + "Ascomycete phenotype ontology" . + . + "flybrain.ndb" . + "false"^^ . + . + . + . + . + . + . + . + "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."^^ . + . + . + "botany" . + . + "bibliography" . + "systems biology" . + . + . + "biology" . + . + "https://bbp.epfl.ch/nexus/web/studios/public/topological-sampling/studios/data:"^^ . + . + . + . + "civic.eid" . + . + . + . + . + . + . + . + . + "rna" . + "Cellosaurus Publication" . + . + . + . + . + "^\\d+-\\d+$"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . + "biomedical science" . + . + . + "^\\d{7}$"^^ . + . + . + . + "gene" . + . + . + "has local unique identifier example" . + . + . + "biology" . + "https://biosimulators.org/simulators/$1"^^ . + . + . + "^\\d+$"^^ . + "Catalogue of Life in Taiwan" . + . + . + . + . + . + "http://www.w3.org/2006/time#"^^ . + . + "ontology" . + . + "Span" . + . + . +_:N24956e04a0274b28aee5d0330adf9db6 "wbug@ncmir.ucsd.edu" . + . + . + . + . + . + "blast" . + . + . + . + . + . + "^\\d+$"^^ . + "araport" . + "LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds."^^ . + . + . + . + . + "Gene Ontology Registry" . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_333:"^^ . + . + "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee."^^ . + "LL379-9"^^ . + . + "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID="^^ . + . + . + "lschriml@som.umaryland.edu" . + . + "Genetic and Rare Diseases Information Center" . + . + "pubmed"^^ . + . + "NCIT_Thesaurus" . + "false"^^ . + . + . + "The JRC Data Catalogue gives access to the multidisciplinary data produced and maintained by the Joint Research Centre, the European Commission's in-house science service providing independent scientific advice and support to policies of the European Union."^^ . + . + "elspeth@genenames.org" . + . + . + "nbrc" . + . + "true"^^ . + "MEROPS Family" . + . + . + "MaizeGDB Locus" . + "regulation" . + "environmental science" . + . + . + . + . + . + . + . + "0000001"^^ . + . + "http://purl.obolibrary.org/obo/XCO_"^^ . + "ICD10WHO" . + "Established in 2005 by professor Wu Taixiang and Li Youping team, West China Hospital, Sichuan University, and the Ministry of Health of China assigned it to be the representative of China to join WHO ICTRP in 2007. The Chinese Clinical Trial Registry provides the services include register for trials, consultation for trial design, central randomization for an allocation sequence, peer review for draft articles and training for peer reviewers. (from website)"^^ . + . + . + "Regulation of Transcription Ontology" . + "hom" . + "false"^^ . + . + . + . + "^EGAS\\d{11}$"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/MAXO_"^^ . + "rxnorm" . + . + . + . + . + . + . + "NRFC051"^^ . + "^\\d{7}$"^^ . + . + . + . + . + "wikidata" . + . + . + . + . + "dev.ga4ghdos" . + . + "NCBI PubChem database of bioassay records" . + . + "false"^^ . + "false"^^ . + . + "http://purl.obolibrary.org/obo/LPT_"^^ . + "https://www.ebi.ac.uk/metagenomics/analyses/$1"^^ . + . + . + . + . + . + . + "obo" . + . + . + . + . + "https://cropontology.org/rdf/CO_359:"^^ . + . + . + . + "https://www.uniprot.org/uniref/"^^ . + . + . + . + . + "UK Provider Reference Number" . + . + "obo" . + "FMAID" . + _:Nfdbadb6140024e31ae546873f2773b8a . + . + . + . + "LO362836C"^^ . + . + . + . + . + . + "^RBR-\\w+$"^^ . + . + . + . + "Genomic Data Commons Data Portal" . + . + . + . + "to" . + . + . + . + "GeneAnnot provides a revised and improved annotation of Affymetrix probe-sets from HG-U95, HG-U133 and HG-U133 Plus2.0. Probe-sets are related to GeneCards genes, by direct sequence comparison of probes to GenBank, RefSeq and Ensembl mRNA sequences, while assigning sensitivity and specificity scores to each probe-set to gene match."^^ . + . + . + "false"^^ . + . + . + "Measurement method ontology" . + . + . + "omics" . + "FAIRsharing User" . + "Model format that can be used in conjunction with the Simulation Experimental Description Markup Language (SED-ML)."^^ . + . + . + . + "https://www.swisslipids.org/#/entity/SLM:"^^ . + . + . + . + . + "false"^^ . + . + . + "false"^^ . + . + "frbrer" . + . + "BQJCRHHNABKAKU"^^ . + . + . + . + . + "https://www.pesticideinfo.org/chemical/$1"^^ . + . + "^\\d{7}$"^^ . + "http://purl.obolibrary.org/obo/MPATH_$1"^^ . + . + . + . + "idocovid19" . + "false"^^ . + . + . + . + . + . + "^ACYPI\\d{6}(-RA)?$"^^ . + . + . + "https://bartoc.org/" . + . + "0002999"^^ . + . +_:Na2cd73fcf1ba47599ec8b2a8dd93bcad "Jonathan Bard" . + . + . + "false"^^ . + . + . + . + . + "ontology" . + . + . + . + "silvio.peroni@unibo.it" . + . + . + . + . + "09200010"^^ . + . + "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/"^^ . + . + . + "false"^^ . + . + . + . + . + "^DB-\\d{4}$"^^ . + "LOC_Os02g13300"^^ . + "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used."^^ . + . + "Australian New Zealand Clinical Trials Registry" . + . + . + "classification" . + . + . + "https://www.uniprot.org/keywords/"^^ . + . + "gmd.gcms" . + . + . + "biomedical science" . + "false"^^ . + "comparative neurobiology" . + . + "The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]"^^ . + "^ITMCTR\\d+$"^^ . + . + . + . + "Paragraph"^^ . + "geonames.feature" . + . + . + . + "lucas.leclere@obs-vlfr.fr" . + . + "Human Plasma Membrane Receptome Families" . + . + . + . + . + "Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity."^^ . + . + . +_:N24956e04a0274b28aee5d0330adf9db6 "William Bug" . + . + "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Schizosaccharomyces pombe."^^ . + . + . + "chemistry" . + "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1"^^ . + "classification" . + . + . + "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=$1"^^ . + . + . + . + . + "^\\d{8}$"^^ . + . + . + . + "agriculture" . + . + "http://exac.broadinstitute.org/variant/$1"^^ . + . + . + "The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]"^^ . + "williams.antony@epa.gov" . + . + "Malaria Ontology" . + . + "^\\d+$"^^ . + . . - "https://w3id.org/scholarlydata/ontology/conference-ontology.owl#$1"^^ . - "illumina.probe" . - "4019477"^^ . - . - "false"^^ . - "FBbt_root" . - . - . - . - "bioinformatics" . - "medicine" . - . - . - . - . - "http://www.w3.org/2002/07/owl#$1"^^ . - . - "Vienna Drosophila Resource Center" . - "^\\d{8}$"^^ . - . - "Clytia hemisphaerica Development and Anatomy Ontology" . - . - . - . - "^\\d{7}$"^^ . - "CellBank Australia" . - . - . - . - . - "https://lincs.hms.harvard.edu/db/cells/"^^ . - "subject agnostic" . - "cell" . - . - . - "life science" . - "false"^^ . - . - . - . - . - "pgxbs-kftva5zv"^^ . - . - . - "biologics" . - "https://anzctr.org.au/Trial/Registration/TrialReview.aspx?ACTRN="^^ . - . - "PR" . - . - "ArachnoServer (www.arachnoserver.org) is a manually curated database providing information on the sequence, structure and biological activity of protein toxins from spider venoms. It include a molecular target ontology designed specifically for venom toxins, as well as current and historic taxonomic information."^^ . - . - "Sensitive Data Ontology" . - . - "16129"^^ . - "obo" . - . - . - "Carsten Linder" . - . - . - . - . - "The Symptom Ontology has been developed as a standardized ontology for symptoms of human diseases."^^ . - "^\\d+$"^^ . - "https://scicrunch.org/resolver/RRID:$1_$2" . - . - "1731"^^ . - "https://www.inaturalist.org/places/"^^ . - . - . - . - . - "molbase" . - "identifier of an entry in the NCI Drug Dictionary"^^ . - "biomedical science" . - . - . - "nih initiative" . - . - . - . - "false"^^ . - . - "KEGG LIGAND" . - . - "clustering" . - "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID="^^ . - . - . - . - "mba" . - . - . - . -_:N5a3da52228154c328228750974332655 "helpdesk@cropontology-curationtool.org" . - . - "false"^^ . - . - . - . - . - "Chemical Component Dictionary" . - . - . - "comparative genomics" . - "fishbase.species" . - . - . - "rna" . - . - . - . - . - . - . - "metlin" . - "https://www.wormbase.org/db/seq/protein?name="^^ . - . - . - "Structural Classification of Protein - Stable Domain Identifier" . - . - . - "glycomapsdb" . - "AC119"^^ . - . - . - "Philippe Rocca-Serra" . - . - . - "http://uri.neuinfo.org/nif/nifstd/"^^ . - . - "https://proteinensemble.org/$1"^^ . - "http://purl.obolibrary.org/obo/SWO_$1"^^ . - . - . - . - "false"^^ . - "CTD Disease" . - . - "protein" . - "https://cropontology.org/rdf/CO_326:"^^ . - "Silvio C.E. Tosatto" . - . - "bugbase.protocol" . - . - . - . - . - . - "atmospheric science" . - . - . - . - . - . - . - . - "March 2017 version "^^ . - "https://mmp.sfb.uit.no/databases/mardb/#/records/"^^ . - . - . - "http://4dx.embl.de/4DXpress/reg/all/cview/gene.do?geneID=$1"^^ . - "^tgv[0-9]+$"^^ . - . - . - "ontology" . - . - . - . - . - "A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum"^^ . - "obo" . - . - . - "true"^^ . - . - "biological Process Inference from eXperimental Interaction Evidence/Microarray Experiment Functional Integration Technology" . - "Project"^^ . - "Tiffany J. Callahan" . - . - "BioLegend" . - . - . - "Selventa legacy chemical namespace used with the Biological Expression Language"^^ . - . - "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families."^^ . - "BindingDB" . - . - . - "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=$1"^^ . - "drug" . - "0000984"^^ . - "obo" . - "knowledge and information systems" . - . - "co_322" . - "Description of a Project" . - . - . - . - . - "^\\d+$"^^ . - . - "377369"^^ . - "KNApSAcK" . + . + . + "janna.hastings@gmail.com" . + . + "nlx.cell" . + . + . + . + . + . + "^NX_\\w+$"^^ . + . + . + . + . + . + "https://cropontology.org/rdf/CO_337:"^^ . + "obo" . + . + "^\\d+$"^^ . + . + . + "true"^^ . + . + . + "NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO)."^^ . + "osa-miR446"^^ . + "false"^^ . + . + "^K\\d+$"^^ . + . + . + "PK-DB an open database for pharmacokinetics information from clinical trials as well as pre-clinical research. The focus of PK-DB is to provide high-quality pharmacokinetics data enriched with the required meta-information for computational modeling and data integration. "^^ . + . + "strain" . + . + . + "gene" . + "https://www.cancerrxgene.org/translation/Drug/$1"^^ . + . + . + . + "The BIRN Project lexicon will provide entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design."^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/$1"^^ . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + "ontology" . + . . - "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra."^^ . - "http://www.unimod.org/modifications_view.php?editid1="^^ . - . - . - . - . - "^\\d{7}$"^^ . - "ecology" . - . - . - "^[0-9]+:[0-9]+$"^^ . - . - "ALFRED has been designed to make allele frequency data on anthropologically defined human population samples readily available to the scientific community and to link these polymorphism data to the molecular genetics-human genome databases."^^ . - . - . - . - . - "ontology" . - . - . - . - . - . + . + . + . + "^HIP\\d{9}(\\.\\d+)?$"^^ . + "false"^^ . + . + . + . + "PWY3O-214"^^ . + . + "wbbt" . + . + . + . + . + . + "BRENDA Enzyme" . + . + . + . + "plo" . + . + "^MMP\\d+.\\d+$"^^ . + . + "drugs" . + "https://go.drugbank.com/salts/"^^ . + . + . + "wujm@bjmu.edu.cn" . + "protein" . + "analytical chemistry" . + "The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures."^^ . + "Sabrina Toro" . + . + "^\\d+$"^^ . + . + . + "ontology" . + "PED00037"^^ . + "false"^^ . + "ontology" . + "regulation" . + "dictybase.est" . + . + . + "Daniel Himmelstein" . + . + . + . + . + . + . + . + "4685"^^ . + "obo" . + . + "life science" . + . + "349124"^^ . + . + "FooDB is resource on food and its constituent compounds. It includes data on the compound’s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds."^^ . + "Gainesville Core Ontology" . + . + . + . + "The OBO Relation Ontology provides consistent and unambiguous formal definitions of the relational expressions used in biomedical ontologies."^^ . + _:N19a416df860e42448f691692a038666c . + . + . + . + "http://search.sisuproject.fi/#/variant/$1"^^ . + . + . + . + "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study."^^ . + "0000081"^^ . + . + . + . + . + "Korean Clinical Research Information Service" . + . + "http://lisanwanglab.org/DASHR/entry/$1"^^ . + . + . + . + "false"^^ . + . + . + . + . + "Molecular Modeling Database" . + . + . + . + . + . + . + . +_:N05e1f9d70eab443abe9085e5871a4338 "pbrooks@hcfa.gov" . + . + "nlm" . + "false"^^ . + " The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"^^ . + . + . + "pathway" . + . + . + "false"^^ . + . + . + "ico" . + . + . + . + . + . + "proteomics" . + . + . + . + "VSAO_RETIRED" . + _:N8c73ba65128d4714985e9de16a287c3a . + "false"^^ . + "false"^^ . + . + . + "addgene" . + . + . + . + . + . + . + . + "glyconavi" . + "C12345"^^ . + . + "https://w3id.org/BCI-ontology#"^^ . + "^\\d{7}$"^^ . + "pesticideinfo" . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_br_$1"^^ . + "false"^^ . + "Nucleotide Sequence Database" . + "CropMRespository is a database of soil and crop biophysical process models."^^ . + . + . + "Danielle Welter" . + . + "0000001"^^ . + "http://purl.obolibrary.org/obo/OVAE_"^^ . + . + "https://www.gwascentral.org/study/$1"^^ . + "lei" . + . + . + . + "9008500"^^ . + . + "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value="^^ . + . + . + . + "http://purl.obolibrary.org/obo/AEON_$1"^^ . + . + "https://www.ebi.ac.uk/intact/search?query="^^ . + . + . + . + . + "pwo" . + . + . + "transposon family" . + "LOC_Os02g13300"^^ . + . + "PaxDb Protein" . + "The Vocabulary of Interlinked Datasets (VoID) is an RDF Schema vocabulary for expressing metadata about RDF datasets. It is intended as a bridge between the publishers and users of RDF data, with applications ranging from data discovery to cataloging and archiving of datasets. This document provides a formal definition of the new RDF classes and properties introduced for VoID. It is a companion to the main specification document for VoID, Describing Linked Datasets with the VoID Vocabulary."^^ . + . + "IntAct provides a freely available, open source database system and analysis tools for protein interaction data."^^ . + "civic.tid" . + . + . + "Each OCI (Open Citation Identifier) has a simple structure: oci:-, where “oci:” is the identifier prefix, and is used to identify a citation as a first-class data entity - see https://doi.org/10.6084/m9.figshare.7127816.v2 for additional information. In each OCI, the first is the identifier for the citing bibliographic resource, while the second is the identifier for the cited bibliographic resource."^^ . + . + "biomedical science" . + . + "small molecule" . + . + . + "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$"^^ . + . + . + . + . + . + "taxonomy" . + "https://www.biozol.de/en/product/$1"^^ . + . + . + . + "0005"^^ . + "^\\d{5}$"^^ . + . + "Genetic and Rare Diseases Information Center" . + . + "lincs" . + . . - . - . - . - . - "https://www.cancerrxgene.org/translation/Drug/$1"^^ . - . - . - "proteomics" . - . - "small molecule" . - . - "pylebail@rennes.inra.fr" . - . - "https://rfam.xfam.org/family/"^^ . - "http://www.cs.tau.ac.il/~spike/maps/$1.html"^^ . - "^\\d{7}$"^^ . - . - . - . - . - "RDF Schema provides a data-modelling vocabulary for RDF data. RDF Schema is an extension of the basic RDF vocabulary."^^ . - . - . - . - "12345"^^ . - . - . - . - . - . - "mco" . - . - . - "https://www.clinicaltrials.gov/study/$1"^^ . - "A0A009E7X8"^^ . - . - "http://www.bioinfo.org/NONCODEv4/show_rna.php?id="^^ . - "false"^^ . - "Digital Object Identifier" . - "https://lincs.hms.harvard.edu/db/datasets/$1"^^ . - . - "FAIRSharing" . - "Babelon" . - . - "An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples, and ecological surveys."^^ . - "http://repository.topdownproteomics.org/proteoforms/"^^ . - . - . - "antibody" . - "312.33"^^ . - "http://metnetonline.org/browse_pathway2.php?pthID=$1"^^ . - . - . - "https://biopragmatics.github.io/providers/msigdb/$1"^^ . - "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1"^^ . - . - "canal"^^ . - "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - . - . - . - "medical informatics" . - "chemistry" . - "molecular biology" . - "complexportal" . - . - . - . - "ORCID" . - . - . - . - . - "Cotton ontology from CottonGen database - June 2019"^^ . - . - . - . - "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value="^^ . - . - . - "Aquatic Sciences and Fisheries Information System" . - "Tuan Amith" . - "https://www.inaturalist.org/users/"^^ . - "pathway" . - . - . - "IUPHAR_LIGAND_ID" . - . - "^\\d{7}$"^^ . - "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . - "life science" . - "biomedical science" . - . - "NMR-instrument specific component of metabolomics investigations" . - . - . - "SL-0002"^^ . - "ontology" . - "NCBI PubChem database of bioassay records" . - . + "PRIDE Controlled Vocabulary" . + "Identifier for an animal, plant, or microorganism from the fossilworks website"^^ . + . + . + . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains."^^ . + . + . + . + . + "life science" . + "http://purl.obolibrary.org/obo/NBO_"^^ . + . + . + . + "bindingdb" . + "ARBA00000001"^^ . + "^\\d+$"^^ . + . + "false"^^ . + . + . + "PMC" . + "^\\d+$"^^ . + . + . + . + . + . + . + . + . + . + "Yasset Perez-Riverol" . + . + . + . + . + . + . + . + "caps" . + . + . + . + . + . + . + "structure" . + "false"^^ . + . + . + "false"^^ . + . + . + . + . + . + "NCIT" . + "https://bioregistry.io/registry/"^^ . + . + . + . + . + . + "rlwalls2008@gmail.com" . + . + . + . + . + . + . + . + "https://glytoucan.org/Structures/Glycans/"^^ . + . + "MobiDB is a database of protein disorder and mobility annotations."^^ . + . + "Ruili Huang" . + . + . + "C2584994"^^ . + "^\\d+$"^^ . + . + . + . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . + "Germplasm Resources Information Network" . + "vario" . + "COMBINE specifications" . + . + . + "^\\d(\\d|\\w)$"^^ . + "Obstetric and Neonatal Ontology" . + "genepio" . + . + . + "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information."^^ . + . + "Asset Description Metadata Schema Vocabulary" . + "^\\d+$"^^ . + . + . + . + . + "true"^^ . + . + "duo" . + . + "false"^^ . + "life science" . + "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations."^^ . + "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + "molecular biology" . + "22RV1_12_2019"^^ . + . + "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo="^^ . + . + "0000001"^^ . + "bibliography" . + . + . + . + . + "KEGG Genes" . + "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=$1"^^ . + . + . + . + "napdi" . + "pride" . + . + . + . + . + . + . + "dna" . + "0000001"^^ . + "ukprns" . + . + "0000048"^^ . + . + . + . + "false"^^ . + . + . + "The Population and Community Ontology (PCO) describes material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology."^^ . + . + . + "glycomedb" . + "lotus" . + . + . + . + "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=$1"^^ . + "secretariat@eol.org" . + "http://purl.org/spar/bido/"^^ . + . + "false"^^ . + . + . + . + . + "1"^^ . + "5.A.1.1.1"^^ . + "ontology" . + . + . + . + "false"^^ . + "Bioregistry Metaregistry" . + . + . + "https://pk-db.com/data/"^^ . + . + "Ecological terms"^^ . + . + . + . + "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_$1"^^ . + . + . + "^\\d{8}$"^^ . + . + "structure" . + . + . + . + . + . + . + . + "CRW_00469"^^ . + . + . + "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . + . + "http://biohackathon.org/resource/faldo#$1"^^ . + . + . + . + . + . + . + . + "Mark Jensen" . + . + "false"^^ . + . + . + . + . + . + "70"^^ . + . + . + . + "world2dpage" . + "CTCAE" . + . + . + . + . + "Bactibase" . + . + . + . + . + . + "orthodb" . + . + . + . + "Geonamaes" . + "jakkbl@gmail.com" . + . + "https://odc-tbi.org/data/$1"^^ . + "gamete" . + . + . + . + "danbri@w3.org" . + "^\\d{7}$"^^ . + . + . + . + . + . + . + "false"^^ . + "https://civicdb.org/links/variant_group/$1"^^ . + "^2-s2\\.0-\\d+$"^^ . + . + . + . + . + . + . + . + "^Y[A-Z]{2}\\d+[CW]$"^^ . + . + . + . + "uo" . + . + "BG11523"^^ . + . + "^\\d+$"^^ . + . + . + . + . + . + . + . + "clinical studies" . + "Database of Escherichia coli Sequence and Function" . + . + "mriffle@u.washington.edu" . + "The Ontology for Avida (OntoAvida) project aims to develop an integrated vocabulary for the description of the most widely used computational approach for performing experimental evolution using digital organisms (i.e., self-replicating computer programs that evolve within a user-defined computational environment).\n\nThe lack of a clearly defined vocabulary makes biologists feel reluctant to embrace the field of digital evolution. This unique ontology has the potential to change this picture overnight.\n\nOntoAvida was initially developed by https://fortunalab.org, the computational biology lab at the Doñana Biological Station (a research institute of the Spanish National Research Council based at Seville, Spain). Contributors to OntoAvida are expected to include members of the Digital Evolution Laboratory (https://devolab.org/) at Michigan State University (USA).\n\nMore information can be found at https://obofoundry.org/ontology/ontoavida.html"^^ . + . + . + "https://www.ncbi.nlm.nih.gov/medgen/"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/DOID_$1"^^ . + . + . + "false"^^ . + . + "Endogenous retroviruses (ERVs) are common in vertebrate genomes; a typical mammalian genome contains tens to hundreds of thousands of ERV elements. Most ERVs are evolutionarily old and have accumulated multiple mutations, playing important roles in physiology and disease processes. The Human Endogenous Retrovirus Database (hERV) is compiled from the human genome nucleotide sequences obtained from Human Genome Projects, and screens those sequences for hERVs, whilst continuously improving classification and characterization of retroviral families. It provides access to individual reconstructed HERV elements, their sequence, structure and features."^^ . + . + . + . + "epidemiology" . + . + "5112"^^ . + "Elementary Multiperspective Material Ontology" . + "y3ax-8bq3-60"^^ . + "The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles."^^ . + . + . + . + "genecards" . + . + . + . + . + "genome" . + "biology" . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "preclinical studies" . + "hdl" . + . + "issn" . + "Ontology of Biological and Clinical Statistics" . + "130502"^^ . + "molecule" . + "^virsi\\d+$"^^ . + . + . + "Zhiliang Hu" . + . + . + . + . + . + . + . + . + . + . + . + "immunology" . + "The ABCD (AntiBodies Chemically Defined) database is a manually curated depository of sequenced antibodies"^^ . + . + "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + . + "earth science" . + . + . + "Li-San Wang" . + . + "131392"^^ . + . + . + . + . + . + . + "28"^^ . + . + . + "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions."^^ . + . + "EHDAA:2185"^^ . + . + "biomedical science" . + "phylogenetics" . + . + "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management."^^ . + . + . + . + "http://purl.obolibrary.org/obo/PR_"^^ . + "molecular biology" . + "ontology" . + . + . + "obo" . + . + . + "derivatives%2Fthiocyclam%20hydrochloride"^^ . + . + "Rat Resource and Research Center" . + . + "https://www.sigmaaldrich.com/US/en/product/sigma/$1"^^ . + "henrich@embl.de" . + "ftp://ftp.embl-heidelberg.de/pub/databases/protein_extras/hssp/$1.hssp.bz2"^^ . + "eco" . + "http://purl.obolibrary.org/obo/PATO_$1"^^ . + "^\\w{2,3}(-\\w+)?$"^^ . + . + . + "sep" . + . + . + . + . + . + . + "https://scicrunch.org/resolver/RRID:$1_$2" . + "Polbase is a database of DNA polymerases providing information on polymerase protein sequence, target DNA sequence, enzyme structure, sequence mutations and details on polymerase activity."^^ . + "NIF Standard Ontology: OEN Terms in Neurolex" . + "^\\d+$"^^ . + . + "GPCR Natural Variants database" . + "false"^^ . + . + . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$"^^ . + . + "congenic rat" . + . + . + . + . + . + . + . + "inchikey" . + "^\\w+(\\.)?\\w+(\\.)?\\w+$"^^ . + "interfil" . + "https://w3id.org/oc/meta/$1"^^ . + "conferences" . + "genome" . + . + "https://repeatsdb.org/structure/"^^ . + "https://www.ebi.ac.uk/interpro/set/pfam/"^^ . + . + "75"^^ . + . + "life science" . + . + "philippe.rocca-serra@oerc.ox.ac.uk" . + "matt@tislab.org" . + "NLFFF Database" . + . + . + . + . + . + "drugbank.target" . + . + "^\\d+$"^^ . + . + . + . + . + . + "Digital archive of scholarly articles" . + "alzgene" . + . + . + . + . + . + "https://easychair.org/cfp/"^^ . + "http://www.icd9data.com/getICD9Code.ashx?icd9=$1"^^ . + "Ontology about the gross anatomy of the C. elegans"^^ . + "bido" . + "Mingxun Wang" . + "obo" . + . + . + . + . + "metadata" . + "faseb list" . + . + "protein" . + . + "Groundnut ontology" . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/$1"^^ . + . + . + "false"^^ . + . + . + "63189"^^ . + . + "protein" . + . + . + . + . + . + . + . + "data_1664"^^ . + "http://purl.obolibrary.org/obo/MFMO_$1"^^ . + "^\\w+\\_\\d+(\\.\\d+)?$"^^ . + "https://bioregistry.io/cubedb:"^^ . + . + . + "obo" . + . + . + . + . + . + "Surjeet Kumar Arya" . + . + . + "ontology" . + "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"^^ . + . + "false"^^ . + "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id=$1"^^ . + . + . + . + "Epilepsy Ontology" . + . + . + . + . + . + . + . + . + . + . + . + "baseDimensionEnumeration"^^ . + . + "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes"^^ . + . + "http://www.isni.org/isni/$1"^^ . + "obo" . + . + . + . + . + "faseb list" . + . + "http://www.icd9data.com/getICD9Code.ashx?icd9="^^ . + . + . + . + . + "Dan Brickley" . + "57"^^ . + . + "ontology" . + . + "http://smartdb.bioinf.med.uni-goettingen.de/cgi-bin/SMARtDB/getSMAR.cgi?$1"^^ . + "ontology" . + . + . + . + "http://purl.obolibrary.org/obo/PSDO_"^^ . + . + . + . + . + "careerPrizeMoney"^^ . + . + . + . + "RiceNetDB Gene" . + . + . + "proteomics" . + . + "false"^^ . + . + . + . + "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name=$1"^^ . + . + . + "NLXMOL" . + . + . + "906801"^^ . + . + . + "HL7 V2 Code Systems" . + . + "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded."^^ . + . + . + . + . + . + "http://oncotree.mskcc.org/api/tumorTypes/search/code/$1"^^ . + "https://sparontologies.github.io/fabio/current/fabio.html#"^^ . + "ontology" . + . + . + . + "HGNC gene symbol" . + "NP_012345"^^ . + . + . + . + "Virus Pathogen Resource" . + . + . + . + . + "https://omia.org/OMIA"^^ . + . + . + "taxonomy" . + "has download URL" . + . + "domain" . + . + . + . + "Collection of European paediatric cardiac coding files"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "Q9UKQ2"^^ . + "reaction" . + . + . + "Biological Expression Language" . + . + . + _:N2c879c99261d461d9a37ca99cbbfcbb7 . + "https://cryptodb.org/cryptodb/app/record/gene/"^^ . +_:Nfc0f489e36ce453cac43f91508c63245 "Julie Thompson" . + . + . + . + . + "google.scholar" . + . + "nikolaos.moustakas@catalysis.de" . + . + . + . + "MarCat" . + . + . + . + . + . + . + . + . + . + . + "KEGG compound contains our knowledge on the universe of chemical substances that are relevant to life."^^ . + . + . + . + "false"^^ . + . + . + . + . + . + "genewiki" . + . + "^P\\w+$"^^ . + "ama-cpt" . + "^(MNXR\\d+|EMPTY)$"^^ . + . + . + . + . + "life science" . + "Core Vocabulary defines the OSLC Core RDF vocabulary terms and resources, that have broad applicability across various domains."^^ . + . + "false"^^ . + "ontology and terminology" . + "Genomic Distribution of structural Superfamilies" . + . + . + "2019-08-03_00000089_1"^^ . + . + . + . + . + . + . + . + "true"^^ . + "genetics" . + . + "Integrative and Conjugative Element Ontology" . + . + . + . + . + . + . + . + . + . + . + . + "life science" . + "http://www.orpha.net/ORDO/Orphanet_$1"^^ . + . + "false"^^ . + "model" . + "false"^^ . + . + . + "https://www.metanetx.org/equa_info/"^^ . + . + "961"^^ . + . + . + "A collection of clinical trial registries appearing in the World Health Organization's [International Clinical Trials Registry Platform (ICTRP)](https://trialsearch.who.int/)" . + . + . + . + . + . + . + . + "0001885"^^ . + "ICD-10" . + "small molecule" . + . + . + . + . + "aging" . + "^[0-9a-z]{24,24}$"^^ . + . + . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/PLO_$1"^^ . + . + "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"^^ . + . + "GLIDA Ligand" . + "^\\d+$"^^ . + . + "biochemistry" . + . + . + . + . + "https://id.loc.gov/authorities/"^^ . + . + . + . + "false"^^ . + . + . + "image" . + "xml" . + . + "snp2tfbs" . + . + . + . + "http://eawag-bbd.ethz.ch/servlets/pageservlet?ptype=ep&enzymeID=$1"^^ . + . + . + "false"^^ . + "^A\\d{4}$"^^ . + . + "SCOP(e) concise classification string" . + "Protein Ensemble Database ensemble" . + . + "French National Center for Scientific Research - Research Group Identifier" . + "experiment" . + . + . + "http://purl.obolibrary.org/obo/XAO_"^^ . + . + . + "http://fossilworks.org/?a=taxonInfo&taxon_no=$1"^^ . + . + . + . + "beta-carotene"^^ . + . + . + . + "5.1"^^ . + . + . + "molecular chemistry" . + . + "flu" . + "An ontology for non-coding RNA, both of biological origin, and engineered."^^ . + "obo" . + "https://plants.ensembl.org/id/"^^ . + . + "PharmGKB Disease" . + . + . + "http://purl.obolibrary.org/obo/EMAPA_$1"^^ . + . + . + "false"^^ . + . + . + . + "^\\d+$"^^ . + . + . . - . - "insdc.run" . - . - . - . - . - . - . - . - "birnlex" . - . - "phylogeny" . - . - "TAIR Protein" . - . - . - "Bill Duncan" . - . - "TP53-47"^^ . - . - . - "cog.pathway" . - . - . - . - . - . - . - "life science" . - . - . - "^\\d{7}$"^^ . - . - "t3db" . - "SIGNOR" . - "BUNA790102"^^ . - "http://purl.obolibrary.org/obo/FBcv_"^^ . - "structure" . - . - "biology" . - "life science" . - "Database of living organisms, taxonomic. \n The GBIF—the Global Biodiversity Information Facility—is international network and data infrastructure funded by the world's governments and aimed at providing anyone, anywhere, open access to data about all types of life on Earth."^^ . - . - . - "human" . - "obo" . - . - . - "Japan Consortium for Glycobiology and Glycotechnology Database" . - "database" . - . - . - . - . - . - . - . - . - . - "https://giardiadb.org/giardiadb/app/record/gene/$1"^^ . - "relations" . - . - "biomedical science" . - . - . - . - "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID="^^ . - . - "clinvar.submission" . - . - . - "dentistry" . - "genome" . - . - . - "mmp.db" . - . - . - "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."^^ . - . - "true"^^ . - . - "obo" . - . - "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=$1"^^ . - "FullySpecifiedAtom"^^ . - "https://www.drugbank.ca/categories/"^^ . - "life science" . - . - . - "CALIPHO Group Ontology of Human Anatomy" . - "http://www.kegg.jp/entry/$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - "re3data" . - "Sri Lanka Clinical Trials Registry" . - . - "false"^^ . - "ontology" . - "obo" . - "cryptodb" . - . - . - . - . - "https://uniresolver.io/#did:$1"^^ . - "life science" . - "descriptor" . - "FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships."^^ . - "http://www.imgt.org/ligmdb/view?id=$1"^^ . - . - "obo" . - "bykdb" . - . - . - "The Philippine Health Research Registry (PHRR), managed by the Philippine Council for Health Research and Development, is a tool for good governance to promote transparency and accountability in health research. PHRR is a publicly accessible database on newly approved health researches. It includes clinical trials and non-clinical studies conducted in the Philippines. The registry is compliant with the World Health Organization (WHO) standard for clinical trials registry. [from website]"^^ . - . - . - . - . - . - . - . - . - "OSC1416"^^ . - . - . - . - . - . - "^\\d{7}$"^^ . - "https://www.genome.jp/virushostdb/$1"^^ . - . - . - "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1"^^ . - . - . - "https://cstr.cn/"^^ . - . - . - . - . - "https://rnaloops.cs.put.poznan.pl/search/details/"^^ . - . - . - " The Australian New Zealand Clinical Trials Registry (ANZCTR) is an online register of clinical trials being undertaken in Australia, New Zealand and elsewhere. The ANZCTR includes trials from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies.\n\nIn 2007 the ANZCTR was one of the first three trial registries to be recognised by the World Health Organization International Clinical Trials Registry Platform (WHO ICTRP) as a Primary Registry. WHO recognises registries as Primary Registries if they fulfil certain criteria with respect to data content, quality and validity, accessibility, unique identification, technical capacity and administration. The ANZCTR contributes data to the WHO ICTRP, which was developed in 2007. Trials from all ICTRP Primary Registries can be searched at: www.who.int/trialsearch. (from website)"^^ . - . - "ontology" . - "ontology" . + "false"^^ . + . + "oborel" . + "http://purl.obolibrary.org/obo/MI_"^^ . + . + . + "Rosa2"^^ . + "^\\d+$"^^ . + "http://purl.obolibrary.org/obo/CLO_$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/GENEPIO_"^^ . + "Health Canada Drug Identification Number" . + . + . +_:N1dbd0a5640f74b8fbcc7f4ee551d82ae "kninomiya-mope@g.ecc.u-tokyo.ac.jp" . + "swiss-model" . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . + . + "CATH Protein Structural Domain Superfamily" . + . + "horizon_discovery" . + "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + "false"^^ . + . + . + "viralzone" . + . + . + "xlmod" . + "https://www.pirbright.ac.uk/node/$1"^^ . + . + "EasyChair Topic" . + "pscdb" . + "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$"^^ . + . + . + . + "dragondb.locus" . + . + "http://func.mshri.on.ca/yeast/genes/list_functional_scores/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs."^^ . + "https://omim.org/MIM:$1"^^ . + "https://smpdb.ca/view/"^^ . + . + "ChEBI" . + "^HGVPM\\d+$"^^ . + . + "miRBase mature miRNA" . + . + "UMLS Semantic Network The Semantic Network consists of (1) a set of broad subject categories, or Semantic Types, that provide a consistent categorization of all concepts represented in the UMLS Metathesaurus, and (2) a set of useful and important relationships, or Semantic Relations, that exist between Semantic Types."^^ . + . + . + . + . + "structure" . + . + "http://bigg.ucsd.edu/models/$1"^^ . + . + . + . + "PA146123006"^^ . + . + "false"^^ . + "REBASE Enzyme Number" . + . + . + "The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns."^^ . + "The United States Patent and Trademark Office (USPTO) is the federal agency for granting U.S. patents and registering trademarks. As a mechanism that protects new ideas and investments in innovation and creativity, the USPTO is at the cutting edge of the nation's technological progress and achievement."^^ . + "proteomics" . + "0001017"^^ . + "dicom" . + "Lebanon Clinical Trials Registry" . + . + "^(SMP|PW)\\d+$"^^ . + . + . + . + . + "http://multicellds.org/MultiCellDB/$1"^^ . + "^\\w{1,2}\\d{8,10}$"^^ . + . + . + . + "environmental science" . + . + "NeuroVault Collection" . + . + . + "E12768"^^ . + . + . + . + "SoyBase" . + . + . + . + "H-InvDb Transcript" . + . + . + . + . + . + "A vocabulary and ontology repository for agronomy and related domains." . + . + "SIGNOR-252737"^^ . + . + "SIDER Side Effect" . + . + "Philip Strömert" . + . + . + . + "Unified Code for Units of Measure" . + . + . + . + . + . + . + . + "XML Schema Definition" . + "The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality and accuracy of reported adverse events"^^ . + "secondary_attack_rate"^^ . + . + . + "cvdo" . + . + "Henriette Harmse" . + "life science" . + . + "http://foodb.ca/compounds/$1"^^ . + "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]="^^ . + . + . + . + . + "genomics" . + . + "KEGG Genome" . + . + . + . + . + . + . + "Livestock Product Trait Ontology" . + "false"^^ . + . + "An ontology to describe entities related to prescription of drugs"^^ . + "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes."^^ . + . + "System Science of Biological Dynamics dataset" . + . + . + . + . + . + . + . + . + "Telethon Network of Genetic Biobanks" . + "00005254"^^ . + . + . + "registry" . + . + "Infectious Disease Ontology" . + . + . + . + . + . + . + _:N87bd32b830b94121b49a5ee2bcc891af . + "^\\d+$"^^ . + . + . + . + . + "http://topdb.enzim.hu/?m=show&id="^^ . + . + "true"^^ . + . + . + . + . + . + . + . + "https://civicdb.org/links/assertions/"^^ . + "estdab" . + "Regulation of Gene Expression"^^ . + . +_:N753c4de613d34f5896c1c13730649c75 "mssohelp@meddra.org" . + . + . + . + . + . + . + "3905431"^^ . + . + "eurofir" . + "ontology" . + . + "natural science" . + "life science" . + . + "http://www.xmetdb.org/xmetdb/protocol/"^^ . + . + "The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response."^^ . + . + . + "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid="^^ . + . + . + "Lentil ontology" . + "45539"^^ . + "anatomy" . + . + . + . + "Gs0000008"^^ . + . + . + . + . + . + "ontology" . + . + . + . + . + . + "101"^^ . + "go.resource" . + "The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast)."^^ . + . + "^[dp]\\.[a-z0-9]{8}$"^^ . + . + . + . + . + . + "^\\d+$"^^ . + "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2012."^^ . + . + . + . + . + . + "ppdb@gifu-u.ac.jp" . + "http://purl.obolibrary.org/obo/CRO_$1"^^ . + . + . + "^\\d+$"^^ . + "hgnc.genegroup" . + "Molecular Interactions Controlled Vocabulary" . + . + . + . + . + "http://scipion.i2pc.es/ontology/CRYOEM_"^^ . + "1001"^^ . + . + "46"^^ . + "dna" . + . + "ecoliwiki" . + . + . + . + . + . + . + . + . + . + "0007114"^^ . + . + . + . + "gene expression" . + "973a9333-fec7-46dd-8eb5-25738f06ee54"^^ . + "NCT00222573"^^ . + . + . + . + . + . + . + . + . + "^\\d{7}(_\\d)?$"^^ . + . + "http://purl.obolibrary.org/obo/MA_"^^ . + "PRO" . + . + "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . + . + _:Nbd3b87c19aed4ac69586246a536ac439 . + "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert="^^ . + "faseb list" . + "biomedical science" . + . + . + . + . + "https://dataguids.org/ga4gh/dos/v1/dataobjects/"^^ . + "General Standard for Food Additives Online Database" . + . + . + "ontology" . + . + . + "https://ximbio.com/reagent/"^^ . + . + "immunology" . + "anatomy" . + . + . + . + . + "Benchmark Energy & Geometry Database" . + . + . + "90062901"^^ . + "false"^^ . + "E-cyanobacterium Experimental Data" . + "map" . + "^\\d{7}$"^^ . + . + "Orphanet Rare Disease Ontology" . + . + . + "https://www.pombase.org/gene/"^^ . + "huang@southalabama.edu" . + . + "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=$1"^^ . + "http://www.p3db.org/phosphosite.php?id=$1&ref=0"^^ . + . + . + . + . + "false"^^ . + . + . + "false"^^ . + . + . + "H-InvDb Locus" . + . + . + . + "BOLD Systems taxon" . + "dsmz" . + . + . + "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$"^^ . + . + "life science" . + . + . + "https://purl.dataone.org/odo/MOSAIC_"^^ . + . + . + . + . + . + "pathway" . + . + . + . + . + . + "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true"^^ . + "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model."^^ . + . + "^\\d{3}\\.\\d{2}$"^^ . + . + . + . + "DrugBank Reaction" . + . + . + . + . + "https://pharmacodb.ca/datasets/"^^ . + . + . + . + . + . + . + . + "PXD002255::ES_XP_Ubi_97H_HCD_349:scan:9617:LAEIYVNSSFYK/2"^^ . + . + . + . + "Salmon Ontology" . + . + "ctd.disease" . + "http://www.kegg.jp/entry/$1"^^ . + "H00076"^^ . + . + . + . + . + . + . + . + . + "1000290"^^ . + . + "ontology" . + "false"^^ . + . + . + . + "https://w3id.org/linkml/"^^ . + . + . + . + . + . + "gene" . + "^(\\d|\\w)+-\\d$"^^ . + . + . + "gene" . + . + . + "^\\d+$"^^ . + . + . + "false"^^ . + . + "thomas@luetteke-online.de" . + "false"^^ . + . + . + . + . + "false"^^ . + . + . + "ndc" . + . + "The Research Resource Identification Initiative provides RRIDs to 4 main classes of resources: Antibodies, Cell Lines, Model Organisms, and Databases / Software tools.: Antibodies, Model Organisms, and Databases / Software tools.\r\nThe initiative works with participating journals to intercept manuscripts in the publication process that use these resources, and allows publication authors to incorporate RRIDs within the methods sections. It also provides resolver services that access curated data from 10 data sources: the antibody registry (a curated catalog of antibodies), the SciCrunch registry (a curated catalog of software tools and databases), and model organism nomenclature authority databases (MGI, FlyBase, WormBase, RGD), as well as various stock centers. These RRIDs are aggregated and can be searched through SciCrunch."^^ . + "false"^^ . + "property" . + . + . + . + . + . + . + "ontology" . + . + "Xenobiotics Metabolism Database" . + "An ontology for describing the steps in the workflow associated with the publication of a document or other publication entity."^^ . + "ontology" . + . + . + . + "http://purl.obolibrary.org/obo/PRIDE_"^^ . + . + "ontology" . + . + "false"^^ . + . + . + "https://www.ncbi.nlm.nih.gov/clinvar/submitters/"^^ . + . + . + "https://cropontology.org/rdf/CO_336:"^^ . + . + . + . + . . - "https://biopragmatics.github.io/debio/$1"^^ . - "GPST000024"^^ . - "hpo" . - . - . - "swh" . - "http://uri.neuinfo.org/nif/nifstd/nlx_mol_$1"^^ . - . - . - . - . - "https://www.wormbase.org/species/c_elegans/rnai/$1"^^ . - . - . - . - "false"^^ . - "gene" . - . - . - . - . - . - . - "data management" . - . - "^\\d+$"^^ . - . - "pdro" . - . - "https://www.cellosaurus.org/CVCL_"^^ . - . - . - . - . - . - "Bgee organ" . - . - . - . - . - . - . - . - "https://pdc.cancer.gov/pdc/study/$1"^^ . - "ontology" . - "https://www.thaiclinicaltrials.org/show/"^^ . - "structural biology" . - "MultiCellDS collection" . - "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_"^^ . - . - . - . - . - . - . - . - . - . - . - . - "The Animal Transcription Factor DataBase (AnimalTFDB) classifies TFs in sequenced animal genomes, as well as collecting the transcription co-factors and chromatin remodeling factors of those genomes. This collections refers to transcription factor families, and the species in which they are found."^^ . - . - "https://bioregistry.io/cldb:"^^ . - . - . - . - "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$"^^ . - "A database to support glycobiology and glycomics research. Its main focus is on 3D structures, including 3D structure models as well as references to PDB entries that feature carbohydrates."^^ . - "Proteoform Atlas" . - . - . - . - . - "ontology" . - . - . - "EcoliWiki from EcoliHub" . - . - . - . - "Polygenic Score Catalog" . - . - "en-GB"^^ . - "ontology" . - . - . - "18125"^^ . - . - "Nicolas Le Novère" . - . - "obo" . - . - . - "Philippe.Lemercier@sib.swiss" . - "https://purl.dataone.org/odo/SASAP_"^^ . - "scop" . - . - . - "obo" . - "development" . - . - . - . - "obo" . - . - "^\\d+$"^^ . - . - "http://multicellds.org/MultiCellDB/$1"^^ . - "hgmd" . - . - "NeuronDB provides a dynamically searchable database of three types of neuronal properties: voltage gated conductances, neurotransmitter receptors, and neurotransmitter substances. It contains tools that provide for integration of these properties in a given type of neuron and compartment, and for comparison of properties across different types of neurons and compartments."^^ . - "drugs" . - "GNPS is a web-based mass spectrometry ecosystem that aims to be an open-access knowledge base for community-wide organization and sharing of raw, processed, or annotated fragmentation mass spectrometry data (MS/MS)"^^ . - . - . - . - . - "^\\d{7}$"^^ . - "development" . - "identifier for a source/publication venue (journal, conference, etc) in Scopus"^^ . - . - . - "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form “PREFIX:ACCESSION” or \"PROVIDER/PREFIX:ACCESSION” commonly used to specify bioinformatics and other data resources."^^ . - . - "https://www.nextprot.org/term/FA-"^^ . - "^PRO_[0-9]{10}$"^^ . - . - "https://euclinicaltrials.eu/app/#/view/$1"^^ . - . - . - . - . - . - . - . - . - "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=$1"^^ . - "HMS Library of Integrated Network-based Cellular Signatures Datasets" . - "false"^^ . - "^[A-Za-z0-9]+$"^^ . - . - . - "COB brings together key terms from a wide range of OBO projects to improve interoperability."^^ . - . - . - . - . - "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners."^^ . - . - . - "Molbase" . - . - . - . - "co_366" . - "obo" . - "005012"^^ . - . - "life science" . - "protein" . - . - . - . - . - . - . - . - . - . - "http://purl.obolibrary.org/obo/FIDEO_$1"^^ . - "http://purl.obolibrary.org/obo/GEO_"^^ . - "chemistry" . - "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to DNA sequence information."^^ . - . - . - . - "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."^^ . - "false"^^ . - . - . - . - . - "NLXSUB covers subcellular entities similar to the cellular component branch of the Gene Ontology (GO)."^^ . - . - "imgt.ligm" . - . - . - "https://portal.issn.org/resource/ISSN/$1"^^ . - . - . - "Nematode & Neglected Genomics" . - . - . - "rna_sstrand" . - . - "Uberon" . - . - "life science" . - . - "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."^^ . - "UPISO" . - . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - "false"^^ . - "0000004"^^ . - "zeco" . - . - . - . - . - . - "NIA Mouse cDNA Project" . - . - . - "subtiwiki" . - "pathway" . - . - "rrrc" . - "life science" . - . - . - . - . - . - . - "genome" . - . - . - "Health Canada Natural Product Number" . - . - . - "false"^^ . - "informatics" . - . - . - "GLIDA GPCR" . - . - "NameBank is a \"biological name server\" focused on storing names and objectively-derived nomenclatural attributes. NameBank is a repository for all recorded names including scientific names, vernacular (or common names), misspelled names, as well as ad-hoc nomenclatural labels that may have limited context."^^ . - . - "metascience" . - . - . - . - . - . - "co_356" . + . + "imgt.primerdb" . + . + . + . + "http://www.informatics.jax.org/accession/MGI:$1"^^ . + . + . + "preclinical studies" . + "stitch" . + "NLXORG covers organisms."^^ . + "Lindsay Cowell" . + . + . + "mesh.vocab" . + . + . + . + . + _:N7620f5ed203042c99a506f091ba3d8a8 . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + "ontology" . + . + "nucleotide" . + "ConfIDent Event Series" . + . + . + "false"^^ . + "omics" . + . + . + "BioSimulators is a registry of containerized simulation tools that support a common interface. The containers in BioSimulators support a range of modeling frameworks (e.g., logical, constraint-based, continuous kinetic, discrete kinetic), simulation algorithms (e.g., CVODE, FBA, SSA), and modeling formats (e.g., BGNL, SBML, SED-ML)."^^ . + . + . + "obo" . + . + "^\\d+$"^^ . + "easychair.topic" . + . + "Resources used in the semantic web, inspired by [this list](https://github.com/prefixcommons/biocontext/blob/master/registry/semweb_context.yaml) in BioContext." . + . + "Rebuilding a Kidney" . + "A structured controlled vocabulary of the adult anatomy of the mouse (Mus)"^^ . + "chembl.cell" . + . + . + . + . + "molecular infection biology" . + . + . + "00050"^^ . + . + . + . + "wb" . + . + . + . + . + . + . + "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#"^^ . + "obo" . + . + . + . + . + "^PDC\\d+$"^^ . + "false"^^ . + "ontology" . + . + . + "Amos.Bairoch@sib.swiss" . + . + . + . + "insdc.sra" . + . + . + . + . + "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns."^^ . + . + "0000139"^^ . + "^[0-9]+:[0-9]+$"^^ . + . + "http://antibodyregistry.org/AB_$1"^^ . + "WBGene00000001"^^ . + . + "https://mmp.sfb.uit.no/databases/marcat/#/records/"^^ . + . + . + . + . + "https://www.sharkipedia.org/trends/"^^ . + "Homology Ontology" . + . + . + . + . + . + . + . + . + . + "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$"^^ . + . + . + . + . + . + . + "http://www.genomesize.com/result_species.php?id="^^ . + . + . + . + "hms.lincs.cell" . + . + "false"^^ . + . + . + "cp390@cam.ac.uk" . + . + . + . + "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=$1"^^ . + "obo" . + . + "ontology" . + . + . + "chemistry" . + . + "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"^^ . + . + . + . + . + "Pubchem" . + "^phs[0-9]{6}(.v\\d+.p\\d+)?$"^^ . + . + . + . + . + . + . + "http://exac.broadinstitute.org/gene/"^^ . + "Provenance, Authoring, and Versioning Vocabulary" . + "SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.)."^^ . + "conference" . + . + . + "https://uniresolver.io/#did:$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/CEPH_"^^ . + . + "false"^^ . + "http://purl.org/spar/deo/$1"^^ . + . + "false"^^ . + . + . + "The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with tools to facilitate research on the GenitoUrinary (GU) tract."^^ . + . + "laia.subirats@gmail.com" . + . + . + . + . + . + . + . + . + "4DN" . + "obo" . + . + . + . + . + . + . + . + . + . + "protein" . + "hcvdb" . + . + . + . + . + . + . + . + . + "SPIKE Map" . + "^[a-z0-9\\-_]+$"^^ . + . + . + . + "LigandBox" . + . + . + . + . + "http://purl.obolibrary.org/obo/WBbt_$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + "https://eol.org/pages/$1"^^ . + . + "genome" . + . + "mirTarBase" . + . + . + . +_:Nd4c2dc2769a94670873d7070c483e69c "custserv@nlm.nih.gov" . + . + . + "zebrafish line" . + . + . + . + "IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI maintaisn a database of cross references between the primary data sources, it provides minimally redundant but complete sets of proteins for featured species, and it maintains stable and unique identifiers."^^ . + "https://www.ncbi.nlm.nih.gov/biosystems/"^^ . + . + . + . + "BridgeDb Vocabulary" . + . + . + . + . + . + . + "IPR016380"^^ . + "kegg.compound" . + . + . + . + "^DBCAT\\d+$"^^ . + . + "bibliometrics" . + . + . + . + . + "ettensohn@cmu.edu" . + . + . + "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein."^^ . + "http://rgd.mcw.edu/rgdweb/report/gene/main.html?id="^^ . + . + "transcriptomics" . + . + "dna" . + . + "http://func.mshri.on.ca/mouse/genes/list_functional_scores/"^^ . + "https://bioregistry.io/go.rule:"^^ . + . + . + . + . + . + "foaf" . + . + . + . + . + . + . + "International Classification of Diseases, 10th Revision, Procedure Coding System" . + "https://www.kazusa.or.jp/rouge/gfpage/$1"^^ . + "obo" . + . + "^PED\\d{5}$"^^ . + . + . + . + . + "ontology" . + . + "https://lobid.org/gnd/"^^ . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/XPO_"^^ . + . + . + "https://envipath.org/package/"^^ . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$1"^^ . + . + . + . + "gudmap" . + . + . + "^\\d{7}$"^^ . + . + . + "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln="^^ . + . + . + . + "^(\\d\\d\\d|V\\d\\d|E[8-9]\\d\\d)(\\.\\d{1,2})?$"^^ . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + "200-003-9"^^ . + "https://bioschemas.org/profiles/$1"^^ . + . + "false"^^ . + . + "This collection contains the many prefixes for the different repackaging of the International Classification of Diseases (ICD) throughout its major revisions." . + . + . + "0058"^^ . + "gene" . + "drug" . + . + . + . + . + "^T3D\\d+$"^^ . + . + . + . + . + . + . + . + "Sickle Cell Disease Ontology" . + "http://exac.broadinstitute.org/transcript/"^^ . + . + . + . + "^[1-9]\\d*$"^^ . + "ecology" . + "false"^^ . + "health science" . + . + "NIF Standard Ontology: Organisms" . + . + . + . + "SDY2614"^^ . + . + "http://fossilworks.org/?a=referenceInfo&reference_no="^^ . + "neurophysiology" . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/"^^ . + "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term="^^ . + . + . + . + . + . + "Blue Brain Project Knowledge Graph" . + . + "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id="^^ . + . + "Current Dental Terminology" . + "Selventa legacy complex namespace used with the Biological Expression Language"^^ . + "arba" . + . + . + "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=$1"^^ . + "ontology" . + . + . + . + . + . + . + . + . + "false"^^ . + "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments."^^ . + "The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes."^^ . + . + "https://w3id.org/seo#"^^ . + . + . + . + "obo" . + . + . + "dc.elements" . + . + "life science" . + . + . + "1664"^^ . + . + "VirGen a comprehensive viral genome resource, which organizes the ‘sequence space’ of viral genomes in a structured fashion. It has been developed with an objective to serve as an annotated and curated database for complete viral genome sequences."^^ . + . + . + . + . + . + . + . + . + "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"^^ . + . + . + . + "PF3D7_1328700"^^ . + . + "clinicaltrial" . + . + "http://ascl.net/"^^ . + "ontology" . + . + "^[A-Za-z0-9]+$"^^ . + "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=$1"^^ . + . + . + "false"^^ . + . + . + . + "person" . + "proteomics" . + "protein" . + . + . + . + . + . + . + "bco" . + . + . + . + "upa" . + . + . + . + "Mauno Vihinen" . + "The Hazardous Substances Data Bank (HSDB) is a toxicology database that focuses on the toxicology of potentially hazardous chemicals. It provides information on human exposure, industrial hygiene, emergency handling procedures, environmental fate, regulatory requirements, nanomaterials, and related areas."^^ . + "biomedical science" . + "^[OPQopq][0-9][A-Za-z0-9]{3}[0-9]|[A-Na-nR-Zr-z][0-9]([A-Za-z][A-Za-z0-9]{2}[0-9]){1,2}$"^^ . +_:N4cf661d3a80e4bc29af2d32f1413fc73 "Usha Mahadevan" . + "ontology" . + . + . + "BioSystems" . + . + . + . + . + "obo" . + "A Database of Human Hemoglobin Variants and Thalassemias" . + . + . + . + "Global LEI Index" . + . + . + . + . + . + . + . + "obo" . + . + "PDB Structure" . + . + . + . + "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_children=on&stage_id="^^ . + . + "meghan.balk@gmail.com" . + . + . + "false"^^ . + . + . + . + "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world."^^ . + "Aclame" . + "neurolex" . + . + "Homeostasis imbalance process ontology" . + "GenProp0699"^^ . + "WormBase RNAi" . + . + . + "anatomy" . . - . - "ChEMBL-Targets" . - . - . - . - . - . - . - . - . - . - . - . - . - "0000005"^^ . - "owlstar" . - . - . - "http://uri.neuinfo.org/nif/nifstd/birnlex_"^^ . - . - "huge" . - . - . - . - . - "biomedical science" . - . - . - "false"^^ . - . - "^[A-Za-z0-9]+$"^^ . - . - . - . - . - . - . - "enzyme" . - "anatomy" . - . - . - "https://proteininformationresource.org/cgi-bin/resid?id=$1"^^ . - . - . - "earth science" . - . + . + . + . + . + . + . + "GenAge is a database of human and model organism genes related to longevity and aging, maintained by the Human Ageing Genomics Resources (HAGR) group."^^ . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "ViralZone" . + . + "subject agnostic" . + "ontology" . + "https://www.inaturalist.org/users/$1"^^ . + . + . + "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=$1"^^ . + "r.court@ed.ac.uk" . + "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."^^ . + . + "genetic resource" . + . + . + . + "21393"^^ . + . + "0376"^^ . + "http://antibodyregistry.org/AB_"^^ . + . + "0000947"^^ . + "inaturalist.observation" . + "resid" . + . + . + "true"^^ . + . + "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code="^^ . + . + . + . + . + "Toxin and Toxin Target Database" . + . + "Reaxys" . + _:N6d5b847b9ebd4556a5a9c1fcc34574ae . + . + . + . + . + . + . + . + "http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1"^^ . + "false"^^ . + . + . + . + . + . + . + . + . + "scop.sccs" . + . +_:Neabecefb91604f08872b21ea41a4ec75 "Jonathan Bard" . + "BioCyc is a collection of Pathway/Genome Databases (PGDBs) which provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms."^^ . + . + "https://foodb.ca/foods/"^^ . + "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . + "protein" . + . + "Ontology of Precision Medicine and Investigation" . + . + "AmoebaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + "Metabolomics Workbench Project" . + . + "false"^^ . + . + . + . + . + . + . + . + . + "gabi" . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_func_$1"^^ . + "http://purl.obolibrary.org/obo/ICEO_$1"^^ . + . + "false"^^ . + . + "SCC111"^^ . + "PM0012345"^^ . + . + . + "UM-BBD compound" . + "https://cstr.cn/$1"^^ . + "http://purl.obolibrary.org/obo/ECOCORE_"^^ . + . + . + . + "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521]."^^ . + . + . + "false"^^ . + . + . + . + "https://permalink.obvsg.at/$1"^^ . + "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1"^^ . + . + "false"^^ . + "ontology" . + "vz" . + "false"^^ . + . + . + . + "Arctic Data Center Academic Disciplines Ontology" . + "http://zfin.org/$1"^^ . + . + . + "protein" . + "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#$1"^^ . + . + "http://www.genomesize.com/result_species.php?id=$1"^^ . + . + . + . + . + . + . + . + . + . + . + "https://euclinicaltrials.eu/app/#/view/$1"^^ . + . + . + . + "structure" . + . + . + . + . + . + "anatomy" . + . + "https://mediadive.dsmz.de/ingredients/$1"^^ . + . + . + . + . + . + . + . + "duplication" . + . + "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec="^^ . . - . - . - "false"^^ . - . - . - . - . - . - "^\\d{8}$"^^ . - "https://www.wormbase.org/get?name="^^ . - . - "http://purl.obolibrary.org/obo/CHMO_$1"^^ . - . - "http://purl.obolibrary.org/obo/PROCO_"^^ . - . - "FAO/WHO_standards" . - . - "Database for Prokaryotic Operons" . - . - . - "protein" . - . - "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA="^^ . - "https://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?spid=$1"^^ . - . - . - "false"^^ . - "NeuroMorpho.Org is a centrally curated inventory of digitally reconstructed neurons."^^ . - . - "https://www.scopus.com/authid/detail.uri?authorId=$1"^^ . - "Oryzabase Gene" . - . - . - . - . - "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$"^^ . - "26957"^^ . - . - . - . - . - . - "dpv" . - . - . - . - . - . - "BiGG Reaction" . - . - . - "http://purl.obolibrary.org/obo/MMO_$1"^^ . - "gmd.analyte" . - . - . - "https://biopragmatics.github.io/providers/icepo/$1"^^ . - "Doug Howe" . - "ror" . - "^OSC\\d{4}$"^^ . - . - . - . - . - . - . - . - . - "0000001"^^ . - . - "^\\w+$"^^ . - . - . - . - . - "G24361QY"^^ . - . - "^\\d{7}$"^^ . - . - . - . - . - . - . - . - "Event (INOH pathway ontology)" . - . - "https://www.ebi.ac.uk/complexportal/complex/"^^ . - "subject agnostic" . - . - "false"^^ . - "false"^^ . - . - . - "http://purl.obolibrary.org/obo/MAT_$1"^^ . - "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?$1"^^ . - . - "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals"^^ . - . - . - . - . - "bioresource" . - "biodiversity" . - . - "^\\d+$"^^ . - . - "Catalytic Site Atlas" . - "https://www.yeastgenome.org/locus/"^^ . - "image" . - . - "foodb.food" . - . - "Sharkipedia Species" . - . - . - . - . - . - . - . - . - "protein" . - . - "A-GEOD-50"^^ . - . - . - . - . - . - . - . - "1038233"^^ . - "A web-based catalog of recommended measurement protocols selected by experts to include in studies with human participants."^^ . - . - . - . - "life science" . - "0000204"^^ . - . - . - . - . - "ontology" . - . - . - "051"^^ . - "https://www.kew.org/data/grasses-db/www/$1"^^ . + . + "The S/MAR transaction DataBase" . + "false"^^ . + . + . + . + . + "https://www.fao.org/fishery/en/species/$1"^^ . + "strain" . + "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"^^ . + "^\\d{4}\\-\\d{6}\\-\\d{2}$"^^ . + "Olfactory Receptor Database" . + "John Westbrook" . + "aop" . + . + "434"^^ . + . + . +_:N19a416df860e42448f691692a038666c "mejino@u.washington.edu" . + "NLXMOL covers molecules, proteins, and molecular roles, similar to entities in the Protein Ontology, UniProt, and ChEBI, with a focus on those of particular relevance in the nervous system."^^ . + . + "epd" . + . + . + . + "http://substrate.burnham.org/protein/annotation/$1/html"^^ . + . + . + "prediction" . + . + . + . + . + "The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins."^^ . + . + . + . + "https://foodb.ca/foods/$1"^^ . + "^N[0-9]{10}$"^^ . + . + "JAX Mice is a catalogue of mouse strains supplied by the Jackson Laboratory."^^ . + "https://www.ebi.ac.uk/ega/datasets/$1"^^ . + "false"^^ . + . + . + "Application ontology for human cell types, anatomy and development stages for the Human Cell Atlas."^^ . + . + . + "0000000"^^ . + . + "functional genomics" . + . + . + . + . + "Brassica ontology" . + . + . + "jeffvin.wong@utoronto.ca" . + . + "0000005"^^ . + . + . + . + "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e="^^ . + . + "opmi" . + . + "phylogenetics" . + . + "https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/" . + . + . + "prefLabel"^^ . + . + . + "LOTUS Initiative for Open Natural Products Research" . + "C0001"^^ . + "https://www.brenda-enzymes.org/php/result_flat.php4?ecno="^^ . + . + . + . + . + . + . + . + "false"^^ . + . + "^\\d+$"^^ . + . + "MINID Test" . + . + . + "structure" . + . + "umls" . + "false"^^ . + "1200"^^ . + "life science" . + "http://purl.obolibrary.org/obo/TAHH_"^^ . + . + "http://lincsportal.ccs.miami.edu/datasets/#/view/"^^ . + . + . + "splash" . + . + . + . + . + "fossilworks.journal" . + "VIPERdb is a database for icosahedral virus capsid structures . The emphasis of the resource is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration."^^ . + "gsso" . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "https://hdl.handle.net/hdl:20.500.12633/"^^ . + . + . + . + . + "Store DB" . + . + "genome" . + "^\\d+$"^^ . + "omics" . + . + . + "http://mirbase.org/cgi-bin/mature.pl?mature_acc="^^ . + . + . + . + . + . + . + . + "developmental biology" . + . + . + . + "nutritional science" . + . + . + . + . + "^\\d+$"^^ . + "protein" . + . + . + . + "Steven G. E. Marsh" . + . + . + . + "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id=$1"^^ . + "false"^^ . + . + . + . + "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures."^^ . + "false"^^ . + . + "Interlinking Ontology for Biological Concepts" . + . + "obo" . + "protein" . + . + "biomedical science" . + . + . + "goche" . + "0005926"^^ . + . + "epidemiology" . + . + . + . + "TA14985"^^ . + "google.book" . + . + . + . + . + . + . + "CNV syndromes in the DECIPHER genomics database that are linked to Human Phenotype Ontology terms"^^ . + . + "proteomics" . + . + . + . + "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity."^^ . + . + . + . + "^[\\w\\-:,]{3,64}$"^^ . + . + "https://cropontology.org/rdf/CO_320:"^^ . + . + "taxon" . + . + "occ" . + "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code="^^ . + . + . + "false"^^ . + "ontology" . + "MEDLINE" . + . + . + . + . + "20560"^^ . + "swrl" . + "inhibitors" . + "https://www.ebi.ac.uk/cgi-bin/imgt/hla/get_allele.cgi?$1"^^ . + "genome" . + . + "has prefix" . + . + . + . + "life science" . + . + . + . + . + . + . + "The [Semantic Publishing and Referencing (SPAR) Ontologies](http://www.sparontologies.net/ontologies) are a suite of orthogonal and complementary OWL 2 ontologies that enable all aspects of the publishing process to be described in machine-readable metadata statements, encoded using RDF." . + "http://purl.obolibrary.org/obo/GEO_$1"^^ . + . + "https://www.ncbi.nlm.nih.gov/research/cog/cogcategory/"^^ . + "caloha" . + "Quinoa Ontology ontology" . + . + . + . + . + "preclinical studies" . + . + "https://medical-data-models.org/forms/$1"^^ . + "false"^^ . + . + "false"^^ . + . + . + . + . + . + . + "true"^^ . + . + . + "AU124"^^ . + . + . + . + . + . + "genome" . + "health science" . + "false"^^ . + "developmental biology" . + . + "https://datacommons.org/browser/$1"^^ . + . + . + . + "life science" . + . + "Describes typical Computational Chemistry experiments, including Molecular Publications, Molecular Systems, Molecular Calculations"^^ . + . + . + "Software ontology" . + "swisslipids" . + . + . + . + . + . + . + "ontology" . + . + . + . + . + "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations."^^ . + . + . + . + . + . + . + . + "botany" . + "0000000"^^ . + . + "ProteomicsDB Protein" . + . + . + "has resource example" . + . + . + "funderregistry" . + "Zebrafish Phenotype Ontology" . + "conso" . + . + "http://purl.obolibrary.org/obo/FLOPO_$1"^^ . + "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'."^^ . + "https://grants.nih.gov/stem_cells/registry/current.htm?ID=$1"^^ . + . + "obo" . + . + . + "interaction" . + . + . + "^BSU\\d{5}$"^^ . + "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location."^^ . + . + . + . + . + "van_slyke@zfin.org" . + "false"^^ . + "obo" . + . + . + . + "co_330" . + "SYMP" . + . + . + . + "https://biosimulations.org/projects/$1"^^ . + . + "TreeFam" . + "98"^^ . + "Human Proteome Map Peptide" . + . + "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=$1"^^ . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + "Cell line collections (Providers)"^^ . + . + . + "VSAO_0000183"^^ . + . + . + . + "^PTM-\\d{4}$"^^ . + "http://purl.obolibrary.org/obo/PLANA_$1"^^ . + "http://usefulinc.com/ns/doap#"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + "http://www.pharmgkb.org/disease/$1"^^ . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + "Allergome is a repository of data related to all IgE-binding compounds. Its purpose is to collect a list of allergenic sources and molecules by using the widest selection criteria and sources."^^ . + "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice=$1"^^ . + . + "rna" . + "basic research" . + . + . + "^DBMET\\d+$"^^ . + "DBPedia Ontology" . + "^\\d{7}$"^^ . + "life science" . + "false"^^ . + . + "0000632"^^ . + . + "geology" . + . + "compulyeast" . + "AGRICOLA_ID" . + "ddpheno" . + . + . + . + . + "FlyBase is the database of the Drosophila Genome Projects and of associated literature."^^ . + "51"^^ . + . + . + . + "Publons publication" . + . + . + . + "anatomy" . + "Mouse Developmental Anatomy Ontology" . + . + "CY077097"^^ . + . + "UniProt Variants" . + "https://bioregistry.io/dashr.expression:"^^ . + . + . + . + . + . + . + "http://www.jcvi.org/charprotdb/index.cgi/view/"^^ . + . + "Guide to Pharmacology Ligand" . + . + "model" . + "biomedical science" . + . + . + "abs" . + . + "obo" . + . + "false"^^ . + "drugbank.metabolite" . + . + . + . + "ontology" . + . + . + "samuel.friedman@cammlab.org" . + . + . + . + "ontology" . + "ttd.target" . + . + . + . + "gene" . + "https://cropontology.org/rdf/CO_323:$1"^^ . + "SSF57615"^^ . + . + . + . + "aeon" . + . + "The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines."^^ . + "http://multicellds.org/MultiCellDB/$1"^^ . + . + . + "vw253@cam.ac.uk" . + . + "sperm" . + "ito" . + . + . + . + "http://tfclass.bioinf.med.uni-goettingen.de/?tfclass="^^ . + . + . + . + . + . + . + "dbvar.studies" . + "false"^^ . + . + "SIGNOR-C41"^^ . + "959"^^ . + . + . + "image" . + . + "false"^^ . + . + . + . + . + . + "Luis A. Gonzalez-Montana" . + "^\\d+$"^^ . + "https://idr.openmicroscopy.org/search/?query=Name:idr$1"^^ . + . + "1868"^^ . + . + . + . + . + . + . + . + "Phy000CLXM_RAT"^^ . + . + . + . + . + . + . + "stefan.kuhn@dmu.ac.uk" . + "anatomy" . + . + "An expanded example URL for a resource or metaresource." . + . + . + "https://nsrrc.missouri.edu/nsrrc$1info/"^^ . + "^\\d{5}$"^^ . + "http://vita.mbc.nctu.edu.tw/search.php?acc=$1"^^ . + . + . + "NMR database for organic structures and their nuclear magnetic resonance (nmr) spectra. It allows for spectrum prediction (13C, 1H and other nuclei) as well as for searching spectra, structures and other properties."^^ . + . + . + "^\\d+$"^^ . + . + . + . + "Identifiers.org namespace" . + "false"^^ . + . + . + . + . + "KNApSAcK" . + . + . + "0154"^^ . + . + . . - "603903"^^ . - . - "DTO integrates and harmonizes knowledge of the most important druggable protein families: kinases, GPCRs, ion channels and nuclear hormone receptors."^^ . - . - "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=$1"^^ . - . - "chemistry" . -_:N399ec073fe08407c9358ec8cdfa97db1 "sschurer@med.miami.edu" . - . - . - . - . - . - . - . - . - "https://biokb.lcsb.uni.lu/fact/$1"^^ . - "Higher-level classifications of COG Pathways"^^ . - . - "false"^^ . - . - . - "https://www.kegg.jp/entry/"^^ . - . - "genome" . - . - "BioGRID Interactions" . - . - . - . - . - . - . - . - . - . - . - "http://www.tcdb.org/search/result.php?tc="^^ . - "The RNA modification database provides a comprehensive listing of post-transcriptionally modified nucleosides from RNA. The database consists of all RNA-derived ribonucleosides of known structure, including those from established sequence positions, as well as those detected or characterized from hydrolysates of RNA."^^ . - . - . - . - "false"^^ . - . - . - . - . - "https://permalink.obvsg.at/"^^ . - . + . + . + . + . + . + . + . + "FooDB Food" . + "false"^^ . + . + . + "SNOMEDCT_US_2022_09_01" . + "^[a-zA-Z0-9-]+$"^^ . + "Gianni Cesareni" . + . + "fabio" . + "The Polygenic Score (PGS) Catalog is an open database of PGS and the relevant metadata required for accurate application and evaluation."^^ . + "36"^^ . + . + . + "182"^^ . + . + . + . + "https://bioportal.bioontology.org/" . + . + . + . + "^AT.G[0-9]{5}$"^^ . + . + "ontology" . + "protein" . + "false"^^ . + "idog" . + "nlx.sub" . + . + . + . + . + . + . + "BugBase Protocol" . + . + . + . + . + . + . + "protein" . + . + "0000026"^^ . + "life science" . + . + . + . + . + . + . + . + . + . + . + . + "animal genetics" . + . + . + "proteomics" . + "biomedical science" . + "NLXCHEM covers chemicals. Most classes are also in ChEBI."^^ . + "structure" . + "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=$1"^^ . + "SFB_COVID19_MW286762"^^ . + . + . + . + "ontology and terminology" . + "false"^^ . + . + . + "^\\d{4,6}$"^^ . + "structure" . + . + . + "subject agnostic" . + . + "ontology" . + "ontology" . + . + "colao" . + "miRNEST is a database of animal, plant and virus microRNAs, containing miRNA predictions conducted on Expressed Sequence Tags of animal and plant species."^^ . + . + . + . + . + . + "false"^^ . + . + . + . + "Zoë May Pendlington" . + "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC="^^ . + . + . + "ontology" . + "4140"^^ . + . + . + "bcp47" . + "https://archive.softwareheritage.org/browse/swh:"^^ . + "drug" . + . + . + . + "EntrezGene" . + "dna" . + . + . + . + . + "clinvar.record" . + . + . + . + . + . + . + . + "ChemSpider" . + "Life cycle stages for Platynereis dumerilii"^^ . + . + . + . + . + . + "cp" . + . + "^\\d+$"^^ . + . + . + . + . + . + . + . + "Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances."^^ . + "Rhea, the Annotated Reactions Database" . + . + . + . + . + . + "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$"^^ . + . + "vaccine" . + . + . + "false"^^ . + . + . + . + . + . + . + "http://w3id.org/nkos/"^^ . + "https://purl.uniprot.org/uniprot/"^^ . + . + . + "genomics" . + . + . + "^\\d+$"^^ . + "https://bioregistry.io/tkg:"^^ . + . + . + "http://jcggdb.jp/idb/jcggdb/"^^ . + "^\\d{7}$"^^ . + "genetics" . + . + "zfin" . + "Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard."^^ . + "https://rnacentral.org/rna/$1"^^ . + "genetic" . + . + . + . + "biomedical science" . + "srodriguez142857@gmail.com" . + . + . + . + . + . + . + . + . + . + . + "UniProt Proteomes" . + . + "https://pubchem.ncbi.nlm.nih.gov/substance/"^^ . + . + . + "oa" . + "NCI Pathway Interaction Database: Pathway" . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "life science" . + . + "http://www.oid-info.com/get/2.16.840.1.113883.6" . + . + . + "bibliometrics" . + "ProtoNet provides automatic hierarchical classification of protein sequences in the UniProt database, partitioning the protein space into clusters of similar proteins. This collection references protein information."^^ . + "Metabolic Atlas Metabolite" . + "false"^^ . + . + "omics" . + "begdb" . + . + . + "ontology" . + . + . + . + . + . + "chemistry" . + "false"^^ . + "http://purl.obolibrary.org/obo/EMAP_$1"^^ . + . + . + . + . + . + "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound="^^ . + . + . + . + . + . + . + "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."^^ . + . + _:Na482dcd018c24879b9da354f861d92d8 . + . + . + . + . + . + . + . + "kronkcj@mail.uc.edu" . + . + "metagenomics" . + . + . + . + "Monique Zahn" . + . + . + "life science" . + . + "biotools" . + . + . + . + "^\\d+$"^^ . + . + . + "cmf" . + . + . + "https://www.aapc.com/codes/cpt-codes/"^^ . + . + . + "https://aopwiki.org/events/"^^ . + "Animal Genome Chicken QTL" . + . + "http://www.cathdb.info/domain/$1"^^ . + "https://www.ncbi.nlm.nih.gov/genome/"^^ . + . + "17:41223048"^^ . + "false"^^ . + . + . + . + "bioportal" . + . + "https://bioregistry.io/odor:"^^ . + "https://www.storedb.org/store_v3/download.jsp?fileId=$1"^^ . + . + . + . + . + "OMOP" . + . + . + . + . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/"^^ . + "data sharing" . + . + . + . + "hc.npn" . + . + . + "protein" . + "false"^^ . + "https://www.geonames.org/recent-changes/featurecode/$1/"^^ . + . + . + . + . + . + . + . + . + . + . + "mmp.db" . + . + "https://www.gbif.org/species/$1"^^ . + . + . + . +_:Na2cd73fcf1ba47599ec8b2a8dd93bcad "J.Bard@ed.ac.uk" . + . + . + . + . + . + "Next Generation Biobanking Ontology" . + . + . + . + "astrophysics and astronomy" . + "https://www.ebi.ac.uk/pdbe/entry/emdb/"^^ . + . + "968"^^ . + . + . + . + "The Conserved Domain Database (CDD) is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution."^^ . + . + . + . + "rna" . + . + . + "http://purl.obolibrary.org/obo/FBbt_"^^ . + "^\\d+$"^^ . + . + . + . + "dna" . + . + . + . + . + "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id="^^ . + . + . + . + "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. This collection references genes."^^ . + "http://www.pharmgkb.org/disease/"^^ . + "http://purl.obolibrary.org/obo/IDOMAL_"^^ . + "http://purl.obolibrary.org/obo/OOSTT_$1"^^ . + "pgdso" . + . + . + . + . + "https://cellmodelpassports.sanger.ac.uk/passports/"^^ . + "true"^^ . + _:N696d9d4e08614292af9559f78985c799 . + . + "TC" . + . + . + . + "^\\d{7}$"^^ . + . + . + "j.detras@cgiar.org" . + "^\\d{4}-\\d+-\\d+-\\d+$"^^ . + "E-cyanobacterium model" . + . + "cell lines" . + . + "virsi1909"^^ . + . + "cst.ab" . + . + "nemo2" . + . + . + "Frédéric Bastian" . + "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=$1"^^ . + . + . + "Human Cell Atlas Ontology" . + . + "Antibody Registry" . + . + "obo" . + . + . + "ACTRN12623000498695"^^ . + "fobi" . + . + . + "^\\w{3}\\d+$"^^ . + . + . + . +_:N43fb146bdd224e42a916a4eab2535bdc "Animal Diversity Web technical staff" . + "biomedical science" . + "biochemistry" . + . + "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + "agriculture" . + . + . + . + . + "AnVIL DRS" . + "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?"^^ . + "Documentation of the Phenoscape Curation Workflow"^^ . + "https://www.ebi.ac.uk/interpro/entry/pfam/$1"^^ . + . + "foaf" . + "KEGG Orthology (KO) consists of manually defined, generalised ortholog groups that correspond to KEGG pathway nodes and BRITE hierarchy nodes in all organisms."^^ . + . + "Mouse Genome Informatics" . + . + . + . + "life science" . + . + . + . + . + "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=$1"^^ . + . + . + . + . + . + "^B\\d{5}$"^^ . + . + . + . + . + . + "Role Ontology" . + . + . + . + . + . + . + "Structural Database of Allergenic Proteins" . + . + . + . + "itiswebmaster@itis.gov" . + "https://www.ebi.ac.uk/gwas/studies/$1"^^ . + . + . + . + "protein trap" . + . + "3"^^ . + "ALX-210-175"^^ . + . + . + "Brian Aevermann" . + "ontology" . + . + . + . + . + "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . + . + . + . + "http://arabidopsis.org/servlets/TairObject?accession=Gene:"^^ . + "obo" . + . + . + "false"^^ . + . + . + "https://biopragmatics.github.io/providers/mba/$1"^^ . + "iedb" . + "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance"^^ . + . + "^\\S+$"^^ . + . + . + . + . + . + "SNOMEDCTCT_2018_03_01" . + "00056"^^ . + "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/feature_page.php?ice_id=$1"^^ . + ""^^ . + "classification" . + . + "Animal Trait Ontology for Livestock" . + . + "knowledge and information systems" . + . + "false"^^ . + . + "genetics" . + "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=$1"^^ . + "cultured cell" . + . + . + "http://ontologies.dbmi.pitt.edu/edda/StudyDesigns.owl#"^^ . + . + "jrct" . + "ontology" . + "ShareLoc" . + "earth science" . + "dg.4dfc" . + . + "Gene Product Information Schema" . + . + . + "Jonathan Karr" . + . . - . - . - . - "nutritional science" . - . - . - . - "knowledge graph" . - . - . - "upheno" . - . - "ENSG00000169174"^^ . - "apd" . - . - . - . - . - . - . - "genetics" . - . - . - "umbbd.rule" . - . - . - . - "ontology" . - "false"^^ . - "obo" . - . - . - . - "BioCyc collection of metabolic pathway databases" . - "http://purl.obolibrary.org/obo/ECOCORE_$1"^^ . - . - "^\\d+$"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "D053716"^^ . - . - . - "ChemDB is a chemical database containing commercially available small molecules, important for use as synthetic building blocks, probes in systems biology and as leads for the discovery of drugs and other useful compounds."^^ . - . - . - "037727"^^ . - . - . + . + "https://catalog.hathitrust.org/Record/"^^ . + "false"^^ . + . + . + . + . + . + . + "L000001"^^ . + . + . + . + "http://pathway.gramene.org/RICE/NEW-IMAGE?type=PATHWAY&object=$1"^^ . + "clinvar.variant" . + "The Proteolysis MAP is a resource for proteolytic networks and pathways. PMAP is comprised of five databases, linked together in one environment. CutDB is a database of individual proteolytic events (cleavage sites)."^^ . + "hescriva@obs-banyuls.fr" . + . + . + "bacmap.map" . + . + . + . + "false"^^ . + "DTXSID2021028"^^ . + "obo" . + . + . + . + . + "go.model" . + "comparative genomics" . + . + . + "Clement Jonquet" . + . + . + . + . + . + "The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database." . + . + "0000066"^^ . + . + . + "voss@gbv.de" . + . "ontology" . - "abcd" . - "https://www.uniprot.org/journals/"^^ . - . - "http://purl.obolibrary.org/obo/OGSF_$1"^^ . - . - . - . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code=$1"^^ . - "structure" . - . - . - . - "false"^^ . - . - . - "2d-page" . - . - . - "The mission of MediaDive is to transform poorly structured media recipes into a standardized database. The contents of the database include mined thousands of PDF and HTML documents. To ensure the quality of the media and continous improvement of the database, we developed an internal editor interface. Experts at the DSMZ are creating new media and curating the existing media using this interface. [adapted from https://mediadive.dsmz.de/about]"^^ . - "https://europepmc.org/article/CBA/$1"^^ . - . - . - "gene" . - . - . - . - . - . - . - . - . - . - "^\\d+$"^^ . - . - . - . - . - . - "13GS"^^ . - . - "100E"^^ . - "synthetic biology" . - . - . - . - . - "^\\d{7}$"^^ . - . - "false"^^ . - . - "subject agnostic" . - "http://purl.obolibrary.org/obo/VO_"^^ . - . - "Dataset"^^ . - . - . - "UniProt Diseases" . - "qtl" . - "^MNEST\\d+$"^^ . - "lipidmaps" . - . - . - . - . - "http://www.w3.org/ns/oa#"^^ . - "ontology" . - "https://www.flymine.org/flymine/report/ChromosomeBand/"^^ . - "Europe PMC Preprints" . - "SM0000020"^^ . - "^\\d{7}$"^^ . - "http://purl.obolibrary.org/obo/OARCS_"^^ . - "http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=$1"^^ . - "drug" . - . - . - . - . - "Pankaj Jaiswal" . - . - "ontology" . - . - . - "Defunct vaccine information source from the He Lab"^^ . - . - "conferences" . - "^IRCT\\d+N\\d+$"^^ . - . - "the European Hepatitis C Virus Database (euHCVdb, http://euhcvdb.ibcp.fr), a collection of computer-annotated sequences based on reference genomes.mainly dedicated to HCV protein sequences, 3D structures and functional analyses."^^ . - "https://fairsharing.org/users/"^^ . - "ontology" . - "sequence" . + . + "^RF\\d{5}$"^^ . + "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database"^^ . + . + "^C\\d+$"^^ . + . + "false"^^ . + . + . + . + "https://www.merckmillipore.com/catalogue/item/"^^ . + . + "obo_rel" . + . + . + "https://cellbank.snu.ac.kr/english/sub/catalog.php?s_cellid=464&page=detail_info&CatNo=59&strQ=$1"^^ . + . + "life science" . + "https://precision.fda.gov/uniisearch/srs/unii/"^^ . + "^\\d+$"^^ . + . + "gene" . + . + . + . + . + "https://cropontology.org/rdf/CO_348:$1"^^ . + . + . + . + . + . + . + . + "phylogeny" . + . + "phosphopoint.kinase" . + . + "1"^^ . + "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities"^^ . + . + . + . + . + . + "dna" . + . + "false"^^ . + . + . + . + . + . + . + . + . + "ENST00000407236"^^ . + "^\\d+$"^^ . + . + . + "smr@stowers.org" . + . + . + . + "UK Higher Education Statistics Agency" . + . + . + . + "ardb" . + "developmental biology" . + "life science" . + . + "false"^^ . + . + "ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al."^^ . + . + . + "A crystallography domain ontology based on EMMO and the CIF core dictionary. It is implemented as a formal language. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . + . + "PRINTS is a compendium of protein fingerprints. A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of a SWISS-PROT/TrEMBL composite. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space. Fingerprints can encode protein folds and functionalities more flexibly and powerfully than can single motifs, full diagnostic potency deriving from the mutual context provided by motif neighbours."^^ . + "The DBD (transcription factor database) provides genome-wide transcription factor predictions for organisms across the tree of life. The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins."^^ . + "co_325" . + . + "obo" . + . + . + "NLXRES" . + . + . + "Mass spectrometry ontology" . + . + . + "false"^^ . + "ontology" . + "mf" . + "0005067"^^ . + "emolecules" . + . + . + . + . + . + . + . + . + . + "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$"^^ . + . + . + "1354581"^^ . + "chemistry" . + "preclinical studies" . + . + "dna" . + . + . + . + . + . + . + . + . + . + "MLCommons Association artifacts, including benchmark results, datasets, and saved models."^^ . + . + "The Gender, Sex, and Sexual Orientation (GSSO) ontology is an interdisciplinary ontology connecting terms from biology, medicine, psychology, sociology, and gender studies, aiming to bridge gaps between linguistic variations inside and outside of the health care environment. A large focus of the ontology is its consideration of LGBTQIA+ terminology."^^ . + "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F$1"^^ . + . + . + . + . + . + . + . + "Anne.Morgat@sib.swiss" . + "Plant Stress Ontology" . + "Resource for the community to store, retrieve, search, reference, and reuse CellML models."^^ . + . + "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources."^^ . + . + . + . + . + . + . + "Open Researcher and Contributor" . + . + "false"^^ . + "true"^^ . + . + . + . + . + "obo" . + "http://www.w3.org/1999/02/22-rdf-syntax-ns#"^^ . + . + . + . + "00001"^^ . + "false"^^ . + . + . + "^\\d{5,}$"^^ . + . + "dna" . + . + . + "http://ensembl.org/glossary/ENSGLOSSARY_$1"^^ . + "https://restraintsgrid.bmrb.io/NRG/MRGridServlet?block_text_type=2-parsed&db_username=wattos1&file_detail=2-parsed&format=n%2Fa&program=STAR&request_type=block&subtype=full&type=entry&mrblock_id="^^ . + . + "wikipedia.en" . + . + . + "KEGG Drug Group" . + . + "https://dgrc.bio.indiana.edu/product/View?product=$1"^^ . + "taxonomy" . + . + "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/"^^ . + "false"^^ . + . + "https://hamap.expasy.org/unirule/$1"^^ . + . + . + . + . + . + . + "true"^^ . + . + "https://www.ebi.ac.uk/pdbe/entry/emdb/$1"^^ . + "APID (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier."^^ . + "CGH Data Base" . + "Schema for the export of the Bioregistry as RDF"^^ . + . + . + "0000001"^^ . + . + . + . + "biology" . + "obo" . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/dbvar/variants/$1"^^ . + . + . + . + . + . + . + . + "forest management" . + . + . + . + . + "false"^^ . + . + "0000006"^^ . + . + . + . + . + "false"^^ . + . + . + . + "false"^^ . + "https://www.iedb.org/reference/"^^ . + . + . + . + . + "lindsey.anderson@pnnl.gov" . + "An ontology for mouse anatomy covering embryonic development and postnatal stages."^^ . + . + "false"^^ . + . + "ga4ghdos" . + . + "maria.gould@ucop.edu" . + . + "smiles" . + . + . + "https://rapdb.dna.affrc.go.jp/viewer/gbrowse_details/irgsp1?name="^^ . + "BibliographicRecord"^^ . + . + "37232"^^ . + . + "pathway" . + . + "https://horizondiscovery.com/en/search?searchterm="^^ . + . + . + . + . + . + . + . + . + "Scopus is the largest abstract and citation database of peer-reviewed literature: scientific journals, books and conference proceedings. \nDelivering a comprehensive overview of the world's research output in the fields of science, technology, medicine, social sciences, and arts \nand humanities, Scopus features smart tools to track, analyze and visualize research."^^ . + . + . + . + . + "cell line" . + "ontology" . + . + . + . + . + . + . + "Tetrahymena Genome Database" . + . + . + "http://gmd.mpimp-golm.mpg.de/Metabolites/$1.aspx"^^ . + . + "9781584885658"^^ . + "mbrochhausen@uams.edu" . + "^\\d+$"^^ . + . + "false"^^ . + . + "^ENST\\d{11}$"^^ . + "http://phenol-explorer.eu/foods/"^^ . + . + "genome" . + . + . + . + . + . + "Cu.me.I1"^^ . + . + . + . + . + "0001157"^^ . + . + . + . + . + "genome" . + "jaiswalp@science.oregonstate.edu" . + "pharmacogenomics" . + . + . + . + . + "AP011135"^^ . + . + "data management" . + "https://www.encodeproject.org/$1"^^ . +_:Nb6174b7d1201433680b115700d184ee9 "Michelle Futornick" . + "false"^^ . + "systems biology" . + "https://www.fisheries.noaa.gov/species/$1"^^ . + "panorama" . + . + "namerxn" . + "https://archive.gramene.org/db/ontology/search?id=GR_tax:"^^ . + . + "agriculture" . + . + . + . + "epidemiology" . + "false"^^ . + "obo" . + "RYYVLZVUVIJVGH-UHFFFAOYSA-N"^^ . + . + "humanities" . + "^DIP(\\:)?\\-\\d{1,}[ENXS]$"^^ . + . + . + . + "https://github.com/geneontology/go-site/blob/master/metadata/rules/gorule-$1.md"^^ . + . + . + . + "uniprot.disease" . + . + "chemistry" . + . + . + . + . + "structure" . + . + "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments."^^ . + . + . + . + . + . + . + . + . + . + "gene" . + . + . + . + "bioregistry.collection" . + . + "atmospheric science" . + . + "http://data.crossref.org/fundingdata/funder/10.13039/"^^ . + . + . + _:N05e1f9d70eab443abe9085e5871a4338 . + . + . + . + . + . + . + . + . + "ukprn" . + "false"^^ . + . + "PROSITE" . + . + . + . + . + "http://purl.obolibrary.org/obo/DISDRIV_$1"^^ . + "duret@biomserv.univ-lyon1.fr" . + . + . + . + . + "ribocentre" . + "https://repo.napdi.org/study/"^^ . + . + . + . + . + . + "insdc.cds" . + . + "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=$1"^^ . + "classification" . + . + "chemical" . + . + . + . + . + . + . + "genomics" . + . + . + . + "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did="^^ . + . + . + . + "5359"^^ . + . . - . - "10020.2"^^ . - . - . - "enzyme" . - . - . - . - "https://pathbank.org/view/$1"^^ . - . - "^[a-zA-Z0-9][A-Za-z0-9_]+$"^^ . - "false"^^ . - "pdbsum" . - . - "BindingDB is the first public database of protein-small molecule affinity data."^^ . - "0000088"^^ . - "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$"^^ . - "biology" . - . - "false"^^ . - . - "human" . - . - . - . - "false"^^ . - . - . - "dbo" . - "false"^^ . - "2gc4"^^ . - . - "bido" . - . - "http://purl.obolibrary.org/obo/PPO_"^^ . - "Cell line collections (Providers)"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - "virmirdb" . - . - . - "storedb" . - . - . - . - "dna" . - "unists" . - . - . - "false"^^ . - . - "global health" . - . - "Gramene Taxonomy" . - "https://www.cellbiolabs.com/search?keywords=$1"^^ . - . - . - . - "Olfactory Receptor Database" . - "International Classification of Diseases, 10th Revision, Clinical Modification" . - . - . - "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters (Submitter IDs). Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submitters (submitter ids) that submit the submissions (SCVs)."^^ . - "Veterinary pharmaceuticals are biologically active and potentially persistent substances which are recognised as a continuing threat to environmental quality. Whilst the environmental risk of agricultural pesticides has had considerable attention in recent decades, risks assessments for veterinary pharmaceuticals have only relatively recently began to be addressed. Risk assessments and risk modelling tend to be inherently data hungry processes and one of the main obstacles to consistent, accurate and efficient assessments is the need for a reliable, quality and comprehensive data source."^^ . - "false"^^ . - "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#$1"^^ . - . - . - "^\\d+$"^^ . - "Allergome" . - . - "0000609"^^ . - . - . - . - . - . - . - . - "https://signor.uniroma2.it/relation_result.php?id="^^ . - . - . + . + . + . + "biodiversity" . + . + . + . + . + "^\\d+$"^^ . + . + "gianni.cesareni@torvergata.it" . + . + . + . + "biomedical science" . + "3305"^^ . + . + . + . + "http://unite.ut.ee/bl_forw.php?nimi=$1"^^ . + "RISM Online is a new service that will publish the bibliographic and authority data from the catalogue of the Répertoire International des Sources Musicales project."^^ . + "Selventa legacy chemical namespace used with the Biological Expression Language"^^ . + . + "^LGCEDe-S-\\d{9}$"^^ . + . + . + . + . + "http://rice.plantbiology.msu.edu/cgi-bin/gbrowse/rice/?name="^^ . + . + . + "research" . + "gtex" . + . + "This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]"^^ . + "true"^^ . + . + "1000"^^ . + . + . + . + "http://purl.obolibrary.org/obo/LEPAO_$1"^^ . + "health_care_quality_assessment"^^ . + . + "Gene Regulation Ontology" . + . "Ontologized MIABIS" . - . - . - . - "mbrochhausen@uams.edu" . - . - . -_:N570e518956434d898c70e01934637874 "julie@igbmc.u-strasbg.fr" . - . - . - . - . - . - . - . - "^\\d{3}\\w(\\w|\\d_)\\d{4}X$"^^ . - . - . - . - "developmental biology" . - . - "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id=$1"^^ . - "Ontology of standardized units"^^ . - . - . - "http://genomesonline.org/cgi-bin/GOLD/bin/GOLDCards.cgi?goldstamp="^^ . - . - . - "Protein and Associated NucleotideDomains with Inferred Trees" . - "mmo" . - "Yuki Yamagata" . - . - "mobidb" . - "ontology" . - . - . - . - . - . - "cco" . - "^\\d{6}$"^^ . - . - . - "Infectious Disease Ontology holds entities relevant to both biomedical and clinical aspects of most infectious diseases."^^ . - . - "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Project&ProjectID=$1"^^ . - . - "obo" . - . - "genomics" . - . - . - "ontology" . - . - . - "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/"^^ . - . - . - . - . - "genetics" . - _:N0ae28fac82dc472a8eae124a719e75e4 . - . - . - "762"^^ . - "ontology" . - "https://schema.org/$1"^^ . - "0003463"^^ . - . - . - . - . - . - . - . - . - "vbrc" . - . - . - "http://purl.obolibrary.org/obo/MONDO_"^^ . - . - . - "https://lobid.org/gnd/"^^ . - "false"^^ . - . - . - "computer science" . - . - "obo" . - . + . + "HMS LINCS Cell" . + . + . + . + "life science" . + . + "0807.4956v1"^^ . + . + "SNOMEDCT_US_2020_03_01" . + . + . + "http://rna.igmors.u-psud.fr/NAPP/Niveau2.php?specie=$1"^^ . + "Plant Genome Network" . + . + . + "ontology" . + "^UCR\\d{5}$"^^ . + . + "KEGG DRUG contains chemical structures of drugs and additional information such as therapeutic categories and target molecules."^^ . + . + "https://www.ebi.ac.uk/arrayexpress/experiments/$1"^^ . + . + "^[1-9]\\d*$"^^ . + "uminctr" . + "ontology" . + "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=$1"^^ . + . + . + "Banana Trait Dictionary in template 5 - Bioversity & IITA - April 2019"^^ . + . + . + . + . + "polcaes@gmail.com" . + "^\\w+$"^^ . + . + . + . + "SP_SL" . + "gthayman@mcw.edu" . + . + . + . + . + . + . + . + "TS-0001"^^ . + "false"^^ . + . + . +_:N95542206a009415999a81d74302dc9b9 "Crop Ontology Helpdesk" . + . + "A download link for the given resource" . + "The Pathway Interaction Database is a highly-structured, curated collection of information about known human biomolecular interactions and key cellular processes assembled into signaling pathways. This datatype provides access to pathway information."^^ . + . + . + . + "Echinobase" . + . + . + "biomedical science" . + "http://bitterdb.agri.huji.ac.il/Receptor.php?id=$1"^^ . + . + . + "MediaDive Solution" . + . + . + . + "^GE\\d+$"^^ . + "discoverx" . + . + "false"^^ . + "false"^^ . + . + . + . + "http://lisanwanglab.org/DASHR/entry/"^^ . + . + . + . + . + . + . + . + . + . + . + "Database of RNA Junctions and Kissing loop Structures" . + . + . + . + "http://standards.iso.org/iso/15926/part14/"^^ . + "UniRef90_P00750"^^ . + "life science" . + "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid="^^ . + . + "false"^^ . + . + . + . + . + "1.10.8.10"^^ . + . + . + . + . + . + . + "PharmacoDB Datasets" . + "angiology" . + "PSI-MI" . + "Egon Willighagen" . + . + "https://fairsharing.org/organisations/$1"^^ . + . + "https://e-cyanobacterium.org/bcs/rule/$1"^^ . + "ontology" . + . + . + "Fababean ontology" . + . + "small molecule" . + "https://bioregistry.io/metaregistry/cellosaurus/$1"^^ . + . + . + . + "^[a-z]+(\\..*?)?$"^^ . + . + "https://registry.identifiers.org/registry/"^^ . + . + . + . + . + . + "protein"^^ . + . + . + . + . + "reaction" . + . + "Proteoform Atlas" . + . + . + . + "0004486"^^ . + . + "false"^^ . + . + . + "false"^^ . + . + "146421"^^ . + "hsa00190"^^ . + . + . + . + . + . + . + . + . + "life science" . + . + . + "https://w3id.org/nfdi4cat/voc4cat_"^^ . + . + "Sanger Cell Model Passports" . + "http://purl.obolibrary.org/obo/GO_"^^ . + . + . + "https://cropontology.org/rdf/CO_322:$1"^^ . + "Semantic Web for Earth and Environment Technology Ontology" . + "mingxun.wang@cs.ucr.edu" . + "medicine" . + "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#$1"^^ . + . + . + "P53350"^^ . + "http://func.mshri.on.ca/mouse/genes/list_functional_scores/$1"^^ . + "^TA\\d+$"^^ . + "false"^^ . + "false"^^ . + . + . + . + . + . + "false"^^ . + "https://www.storedb.org/store_v3/download.jsp?fileId="^^ . + "Rutger Vos" . + "http://alk.ibms.sinica.edu.tw/cgi-bin/miRNA/virus.cgi?tax_id="^^ . + . + . + . + . + "false"^^ . + "co_346" . + . + . + "sheeba.samuel@uni-jena.de" . + . + "AntiBodies Chemically Defined database" . + "false"^^ . + "is deprecated" . + . + . + "protein-protein interactions" . + "IUPHAR_LIGAND_ID" . + . + . + . + _:N7c8596a0bbc447a698650bd50784b249 . + "supfam" . + "https://w3id.org/mixs/$1"^^ . + "fly" . + . + . + . + . + . + "false"^^ . + "false"^^ . + . + . + . + "TIGR protein families" . + "gold.genome" . + "^[A-Za-z_0-9]+$"^^ . + . + "iNaturalist User" . + . + . + "false"^^ . + . + . + . + "3792"^^ . + . + . + . + . + "Curation of Neurodegeneration Supporting Ontology" . + "msio" . + "^\\d+$"^^ . + . + . + . + _:N41832f0c597c429ab1999cfcb8242156 . + . + "multicellds.snapshot" . + . + "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol="^^ . + "Cell line collections (Providers)"^^ . + . + "tahe" . + "false"^^ . + . + "RBR-6qvdftm"^^ . + "Getty Thesaurus of Geographic Names" . + "sharkipedia.trend" . + . + "A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants)"^^ . + "neurophysiology" . + "http://purl.obolibrary.org/obo/LOGGERHEAD_"^^ . + "false"^^ . + "obo" . + "mat" . + "http://purl.obolibrary.org/obo/FOBI_$1"^^ . + . + . + . + . + . + . + "life science" . + "^(UMR|UMS|UMI|UPR|URA|USR|GDR|EA|FR|SNC|ERL|FRC|FRE|IFR|MOY)\\d+$"^^ . + . + . + "https://sed-ml.org/urns.html#language:$1"^^ . + . + . + "togovar" . + "^[0-9]+$"^^ . + "rna" . + . + "^[A-Z-_0-9]+$"^^ . + "^[A-Z]+[A-Z-0-9]{2,}$"^^ . + "https://go.drugbank.com/bio_entities/"^^ . + . + . + . + "^[SCTAGMNU]\\d+$"^^ . + "Documentation of SMILES (Simplified Molecular Input Line Entry System), a line notation (a typographical method using printable characters) for entering and representing molecules and reactions."^^ . + "false"^^ . + . + "lutz.fischer@tu-berlin.de" . + "true"^^ . + "life science" . + "ontology and terminology" . + . + . + . + "Polygenic Score Catalog" . + . + . + . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "Lonza" . + . + . + . + . + . + . + . + . + "splash10-0zq2000000-77302b0326a418630a84"^^ . + "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession="^^ . + . + "physics" . + . + "genome" . + . + "clao" . + . + . + . + . + "1458400"^^ . + . + . + . + "4544"^^ . + . + . + . + "KEGG" . + "Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria smegmatis information."^^ . + . + . + . + . + "false"^^ . + . + "Rnaloops stores the information about n-way junctions (where n≥3) found in experimentally determined rna 3d structures deposited in the protein data bank."^^ . + . + "genome" . + . + "Cryo Electron Microscopy ontology" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/VSAO_"^^ . + "http://purl.obolibrary.org/obo/HsapDv_$1"^^ . + . + "0000091"^^ . + . + . + . + "KEGG_DRUG_GROUP" . + . + . + . + . + . + . + . + "obo" . + "3771877"^^ . + . + "animal husbandry" . "Adrien Rougny" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "bcgo" . - "RGD Disease Ontology" . - . - "obo" . - "^\\d+$"^^ . - "false"^^ . - . - . - . - . - . - "The IUPAC International Chemical Identifier (InChI, see MIR:00000383) is an identifier for chemical substances, and is derived solely from a structural representation of that substance. Since these can be quite unwieldly, particularly for web use, the InChIKey was developed. These are of a fixed length (25 character) and were created as a condensed, more web friendly, digital representation of the InChI."^^ . - "molecular dynamics" . - "false"^^ . - "http://purl.obolibrary.org/obo/MICRO_$1"^^ . - . - "false"^^ . - . - "false"^^ . - "^C\\d{4}$"^^ . - . - . - "psychiatry" . - . - "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . - . - . - "We built this ontology primarily to support comparative effectiveness researchers studying claims data. They need to be able to query U.S. National Drug Codes (NDCs) by ingredient, mechanism of action (beta-adrenergic blockade), physiological effect (diuresis), and therapeutic intent (anti-hypertensive)."^^ . - . - . - . - "The Radiomics Ontology aims to cover the radiomics feature domain with a strong focus on first order, shape, textural radiomics features. In addition, in the original version. it includes classes about segmentation algorithms and imaging filters. Due to a recent collaboration with the IBSI (International Biomarkers Standardization Initiative), the ontology has been expanded (v 1.6) and it includes all the entities presented in the IBSI document. Therefore, a broad coverage of not only radiomics features, but also every entity (e.g. software properties, filter properties, features extraction parameters) involved into radiomics computation has been added. In the latest version (v2.0), the ontology URIs have been updated to reflect the codes avaialble in the IBSI latest manual. [bioportal]"^^ . - "biocyc" . - . - "plant genetics" . - "^C\\d+$"^^ . - . - "https://www.jax.org/strain/$1"^^ . - "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to quantitative trait loci identified in Gramene."^^ . - "https://lotus.naturalproducts.net/compound/lotus_id/$1"^^ . - . - "biomedical science" . - "false"^^ . - "celia.michotey@inrae.fr" . - . - "drug development" . - "^\\d+$"^^ . - . - "AB1925000"^^ . - "ASTD" . - "drug repositioning" . - "dommino" . - "Disease Drivers Ontology" . - "nembase" . - . - . - . - . - . - . - . - . - . - "agriculture" . - . - . - "https://www.ncbi.nlm.nih.gov/nucest/"^^ . - . - "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1"^^ . - . - . - "ontology" . - "false"^^ . - "darc" . - . - . - . - "RiceNetDB Compound" . - "NAPP (Nucleic Acids Phylogenetic Profiling is a clustering method based on conserved noncoding RNA (ncRNA) elements in a bacterial genomes. Short intergenic regions from a reference genome are compared with other genomes to identify RNA rich clusters."^^ . - "false"^^ . -_:Nf42f1ec046d341cc9a6884792076b13b "datex@efsa.europa.eu" . - . - . - . - . - "ontology" . - . - "ontology" . - . - . - . - "swrl" . - . - "false"^^ . - . - . - "true"^^ . - "protein" . - . - "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i="^^ . - . - . - . - "obo" . - "PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains."^^ . - . - "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp="^^ . - . - . - "82"^^ . - "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier."^^ . - "BIOZIL" . - . - "https://mednet-communities.net/inn/db/ViewINN.aspx?i=$1"^^ . - . - . - "bartoc" . - . - "https://www.kew.org/data/grasses-db/www/"^^ . - . - . - . - "cordis.project" . - "SNOMECT" . - . - . - . - . - . - "Golm Metabolome Database Analyte" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - . - "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments."^^ . - . - "anatomy" . - . - . - . - . - "life science" . - . - "The post-translational modifications used in the UniProt knowledgebase (Swiss-Prot and TrEMBL). The definition of the post-translational modifications usage as well as other information is provided in the following format"^^ . - "http://www.p3db.org/protein.php?id=$1&ref=0"^^ . - . - "ICD" . - "Abdomen"^^ . - . - "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"^^ . - . - . - . - "false"^^ . - . - . - "false"^^ . - . - . - "IUPAC Gold Book Compendium of Chemical Terminology" . - . - . - . - . - . - "false"^^ . - "https://cropontology.org/rdf/CO_327:"^^ . - . - . - . - "^\\d+$"^^ . - "obo" . - . - . - "Codon Usage Tabulated from GenBank" . - . - "datasubs@ebi.ac.uk" . - . - "computational biology" . - . - "http://open-services.net/ns/core#"^^ . - . - "https://flybase.org/reports/FBtc$1"^^ . - . - . - "http://purl.obolibrary.org/obo/TAXRANK_$1"^^ . - . - . - . - . - . - . - . - . - . - "00000021"^^ . - "RSNA Informatics RadLex" . - . - "http://purl.obolibrary.org/obo/MRO_$1"^^ . - . - . - . - . - . - "false"^^ . - "secondary_attack_rate"^^ . - "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=$1"^^ . - . - . - . - "false"^^ . - . - . - "KEGG ENVIRON (renamed from EDRUG) is a collection of crude drugs, essential oils, and other health-promoting substances, which are mostly natural products of plants. It will contain environmental substances and other health-damagine substances as well. Each KEGG ENVIRON entry is identified by the E number and is associated with the chemical component, efficacy information, and source species information whenever applicable."^^ . -_:N0832d90b503b48f08260e88fa8495d79 "Julian Seidenberg" . - "aop.relationships" . - "alzgene" . - "An ontology supporting data modeling in WikiPathways"^^ . - . - "http://purl.obolibrary.org/obo/ERO_$1"^^ . - . - . - "^\\d{7}$"^^ . - "https://uniresolver.io/#did:"^^ . - . - . - . - . - . - . - . - . - "false"^^ . - "licebase" . - . - . - . - . - "GitHub Pull Request" . + . + . + . + "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym="^^ . + . + "NITE Biological Resource Center" . + . + . + "A gazetteer constructed on ontological principles. The countries are actively maintained."^^ . + . . - . - . - . - . - "http://www.sasbdb.org/data/"^^ . - . - . -_:N2c447aacef584c2594724c5666a30b84 "adw_geeks@umich.edu" . - . - "kegg.genome" . - . - . - "ukprn" . - "r0001"^^ . - "A database for Triticeae and Avena references."^^ . - "false"^^ . - . - . - . - "false"^^ . - "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"^^ . - . - . - . - . - . - "napp" . - . - . - . - "protein" . - . - "chenyangnutrition@gmail.com" . - "^Q[A-Z0-9]+$"^^ . - "medicine" . - "false"^^ . - . - . - "developmental biology" . - . - "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id="^^ . - . - . - . - . - "life science" . - "PNS12@cam.ac.uk" . - "Identifiers.org" . - . - "reactions" . - . - . - "gene" . - . - . - "The SWISS-MODEL Repository is a database of 3D protein structure models generated by the SWISS-MODEL homology-modelling pipeline for UniProtKB protein sequences."^^ . - "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1"^^ . - . - . - "obo" . - . - . - . - "151022"^^ . - . - "false"^^ . - . - . - "xsd" . - "AB016785"^^ . - . - . - . + . + . + "orphanet" . + . + . + . + . + . + "phylogenetics" . + . + . + "1200031"^^ . + . + "literalForm"^^ . + "ecg" . + . + . + . + . + . + . + "demographics" . + . + "Database of researchers to track publications, citation metrics, peer reviews, and journal editing work."^^ . + "false"^^ . + . + "entiminae@gmail.com" . + . + "UBREL" . + . + . + . + "life science" . + . + . + . + . + . + "false"^^ . + "false"^^ . + "10595"^^ . + "hinv.protein" . + . + "preclinical studies" . + "life science" . +_:N43fb146bdd224e42a916a4eab2535bdc "adw_geeks@umich.edu" . + . + "Contains information about cells and data sheets related to transfection."^^ . + . + . + "faldo" . + . + . + "chemistry" . + . + . + . + . + "bibliometrics" . + . + . + . + . + . + . + . + "ICD-10-PCS is being developed as the successor to Volume 3 of the International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM). For more information about ICD-9-CM, see the ICD-9-CM source synopsis.\n\nICD-10-PCS will be the official system of assigning codes to procedures associated with hospital utilization in the United States. ICD-10-PCS codes will support data collection, payment and electronic health records."^^ . + . + "PPR103739"^^ . + "http://purl.obolibrary.org/obo/COVOC_"^^ . + . + . + . + "Genome properties is an annotation system whereby functional attributes can be assigned to a genome, based on the presence of a defined set of protein signatures within that genome."^^ . + . + "pazar" . + . + . + . + . +_:Nc976beb3ec914342b8df47f37d623366 "Plant Ontology Administrators" . + . + . + "^[A-Z]+$"^^ . + . + . + . + . + "http://bigg.ucsd.edu/compartments/$1"^^ . + . + . + "Plant Growth and Development Stage" . + . + . + "biology" . + . + "protein" . + . + . + . + . + . + . + . + "msigdb" . + . + "^\\d+$"^^ . + "http://purl.obolibrary.org/obo/SPD_$1"^^ . + "Cassava ontology" . + . + "A semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology."^^ . + . + "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/$1"^^ . + . + . + "00000022"^^ . + . + . + "gene expression" . + "BindingDB" . + . + . + "2966"^^ . + "false"^^ . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + "Homologous Organ Groups" . + . + . + "hammer"^^ . + . + . + . + . + "ontology" . + "0000019"^^ . + . + "Rat Genome Database" . + . + . + . + . + . + "false"^^ . + "The dbSNP database is a repository for both single base nucleotide subsitutions and short deletion and insertion polymorphisms."^^ . + "FlowRepository" . + "The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains. \r\nPharmGKB Pathways are drug centric, gene based, interactive pathways which focus on candidate genes and gene groups and associated genotype and phenotype data of relevance for pharmacogenetic and pharmacogenomic studies."^^ . + . + . + . + . + . + "neurovault.image" . + . + . + . + . + "https://horizondiscovery.com/en/search?searchterm=$1"^^ . + "pmr" . + "https://morpheus.gitlab.io/models/$1"^^ . + "^\\d+$"^^ . + . + "http://purl.obolibrary.org/obo/DISDRIV_"^^ . + . + . + . + . + . + "false"^^ . + . + "civic.vgid" . + . + . + . + . + "Annotated Regulatory Binding Sites" . + . + . + "dragondb.dna" . + . + . + "Drosophila gross anatomy" . + . + "taxonomy" . + "https://registry.identifiers.org/registry?query=MIR:"^^ . + "bioinformatics" . + "TrichDB" . + "Kaggle is a platform for sharing data, performing reproducible analyses, interactive data analysis tutorials, and machine learning competitions."^^ . + . + . + "https://fairsharing.org/$1"^^ . + . + "obo" . + . + "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . + "vido" . + "wikipathways" . + "http://purl.obolibrary.org/obo/FBSP_"^^ . + "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID="^^ . + . + . + "Jean-Luc Jannink" . + . + . + . + . + "odrl" . + . + "co_327" . + . + . + "The anatomy of the Tick, Families: Ixodidae, Argassidae"^^ . + . + "https://bdsc.indiana.edu/stocks/$1"^^ . + "https://bioregistry.io/prints:"^^ . + . + . + "2023-503698-40-00"^^ . + . "protein" . - . - "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information."^^ . - "Reactome" . - "disorders" . - . - "gnd" . - "structure" . - . - . -_:Nabf1e8c34e584cfa90b48e1410e90596 "Jonathan Bard" . - . - "Foods in FooDB"^^ . - . - "life science" . - . - . - . - . - . + . + . + . + "Donny Winston" . + . + "Andreas Ruepp" . + "A_24_P98555"^^ . + "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/$1"^^ . + . + . + . + . + . + . + "http://www.chemspider.com/$1"^^ . + "https://w3id.org/oc/oci/$1"^^ . + . + "AURKA"^^ . + . + "The Universal Spectrum Identifier (USI) is a compound identifier that provides an abstract path to refer to a single spectrum generated by a mass spectrometer, and potentially the ion that is thought to have produced it."^^ . + . + . + . + . + . + . + . + . + . + . + . + "The tRNA Gene DataBase Curated by Experts \"tRNADB-CE\" was constructed by analyzing 927 complete and 1301 draft genomes of Bacteria and Archaea, 171 complete virus genomes, 121 complete chloroplast genomes, 12 complete eukaryote (Plant and Fungi) genomes and approximately 230 million DNA sequence entries that originated from environmental metagenomic clones."^^ . + . + . + . + "0000095"^^ . + . + "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . + "true"^^ . + . + . + "https://w3id.org/biolink/vocab/"^^ . + . + . + "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan."^^ . + . + "0000054"^^ . + . . - . - . - . - . - "https://cropontology.org/rdf/CO_360:$1"^^ . - . - . - . - . - "Sabine.Oesterle@sib.swiss" . - "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references strain reports, which include a description of strain origin, disease, phenotype, genetics and immunology."^^ . - . - . - "Repeated CRISPR (\"clustered regularly interspaced short palindromic repeats\") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data."^^ . - . - . - "Collembola Anatomy Ontology" . - . - "4349895"^^ . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "panther.family" . - . - "FaceBase Data Repository" . - "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val="^^ . - . - . - . - . - . - . - . - . - "Fungal gross anatomy" . - . - . - "false"^^ . - . -_:Nf2b505d63be24469901c6814285d166b "pbrooks@hcfa.gov" . - . - "nsc" . - . - . - "BioContext contains modular JSON-LD contexts for bioinformatics data." . - . - . - . - "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . - . - . - "Sequence-Structural Templates of Single-member Superfamilies" . - . -_:N8375243ef7764e1790fa4dedefde6ea2 "Vladimir Mironov" . - "https://chem.nlm.nih.gov/chemidplus/rn/$1"^^ . - "2224"^^ . - "false"^^ . - . - "http://uri.neuinfo.org/nif/nifstd/nlx_organ_$1"^^ . - "metabolights" . - . - . - . - . - . - "co_331" . - . - "false"^^ . - . - . - . - . - . - . - "OncoTree is a dynamic and flexible community-driven cancer classification platform encompassing rare and common cancers that provides clinically relevant and appropriately granular cancer classification for clinical decision support systems and oncology research."^^ . - . - . - . - . - . - "did" . - . - . - "molecular infection biology" . - . - "https://bioregistry.io/kyinno:"^^ . - "http://purl.obolibrary.org/obo/MFOMD_"^^ . - . - . - . - "^\\d+$"^^ . - . - . - "Alpha Tom Kodamullil" . - "ACYPI000159"^^ . - . - . - . - . - . - . - . - "^EGAS\\d{11}$"^^ . - . - . - "video resource" . - . - . - "comparative genomics" . - . - "nif.cell" . - . - "HOSO is an ontology of informational entities and processes related to healthcare organizations and services."^^ . - . - "protein" . - . - . - . - . - "^\\d+$"^^ . - . - . - "experimental animal" . - . - . - "gene" . - "http://phylomedb.org/?seqid="^^ . - . - "humIGHV025"^^ . - "pseudogene.org" . - . - "fig|306254.1.peg.183"^^ . - "biology" . - . - . - "life science" . - . - "RAP-DB Locus" . - "genetics" . - "ProtClustDB" . - . - "chemistry" . - . - "https://mips.helmholtz-muenchen.de/corum/?id=$1"^^ . - "The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community."^^ . - . - . - . - . - . - . - . - "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=$1"^^ . - "MSH" . - . - "53504"^^ . - "http://www.bind.ca/Action?identifier=bindid&idsearch=$1"^^ . - . - "The COVID-19 epidemiology and monitoring ontology" . - . - "false"^^ . - "gold standard" . - . - "ontology" . - "Cell line collections (Providers)"^^ . - . - . - "https://www.uniprot.org/keywords/$1"^^ . - . - . - . - "dicom" . - "anatomy" . - "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)."^^ . - "http://purl.obolibrary.org/obo/OARCS_$1"^^ . - . - "ontology" . - . - . - . - . - "false"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/nucest/$1"^^ . - . - . - "3851"^^ . - "bioinformatics" . - . - . - . - . - . - "jrct" . - . - . - . - . - "FBgn0011293"^^ . - "00000098"^^ . - . - . - "A001094"^^ . - . - . - "Jörg Wicker" . - . - "PANTHER Node" . - . - "obo" . - . - "sequence" . - . - "global health" . - "tto" . - "CVCL" . - . - _:Nd9b3195f68dc45c99c9355f67278f11b . - . - "cell cycle" . - . - . - . - . - . - . + "Allen Institute Ontologies" . + "^\\d+$"^^ . + "false"^^ . + . + "Database containing promotor sequences found in Saccharomyces cerevisiae."^^ . + . + . + . + . + . + . + "aef4c195-9cf9-46db-a12a-7cfd1ff3eec3"^^ . + . + . + . + . + . + . + . + . + . + "gocc" . + "mpidb" . + . + . + "comparative genomics" . + . + . + . + . + "false"^^ . + . + . + "8cf84adb-b4db-4807-ac98-0004247c35df"^^ . + . + . + . + . + . + "merops.family" . + . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$"^^ . + . + . + . + . + . + . + . + . + "https://hamap.expasy.org/unirule/"^^ . + . + "obo" . + . + . + . + "environmental science" . + "genecards.geneannot" . + . + . + "protein" . + . + . + . + . + . + . + "functional genomics" . + "obo" . + "demographics" . + . + . + . . - . - "mediadive.medium" . - . - "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns."^^ . - . - . - "cell biology" . - . - . - "false"^^ . - . - . - . - "KC-0979"^^ . - . - . - . - . - "http://www.nbrc.nite.go.jp/NBRC2/NBRCCatalogueDetailServlet?ID=NBRC&CAT="^^ . - . - "false"^^ . - "pmap.substratedb" . - "The Network Data Exchange (NDEx) is an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge."^^ . - "Datanator Gene" . - . - "http://purl.obolibrary.org/obo/COLAO_"^^ . - . - "polysaccharide" . - . - "http://vocab.getty.edu/page/tgn/"^^ . - . - . - . - . - "Tribolium Genome Database -- Insertion" . - . - . - "https://web.expasy.org/abcd/ABCD_$1"^^ . - . - . - . - "Fernanda Dorea" . - . - "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy, infrared spectroscopy, ultraviolet and nuclear magnetic resonance."^^ . - "Roman Laskowski" . - . - . - . - . - . - . - "lutz.fischer@tu-berlin.de" . - "environmental science" . - . - "KEGG RCLASS contains classification of reactions based on the chemical structure transformation patterns of substrate-product pairs (reactant pairs), which are represented by the so-called RDM patterns."^^ . - "CHEBI" . - . - "Cell line databases/resources"^^ . - . - "subject agnostic" . - "ontology" . - . - . - . - . - . - "The web-based FAIRSharing catalogues aim to centralize bioscience data policies, reporting standards and links to other related portals. This collection references bioinformatics data exchange standards, which includes 'Reporting Guidelines', Format Specifications and Terminologies."^^ . - . - "Continuous Automated Model Evaluation" . - "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$"^^ . - . - . - . - . - "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice="^^ . - . - "BitterDB Receptor" . - "https://bioregistry.io/cmecs:"^^ . - . - . - . - "https://phytochem.nal.usda.gov/phytochem/chemicals/show/"^^ . - . - "PSEEN0001"^^ . - "The Swiss Personalized Health Network is a national infrastructure initiative with the aim to develop, implement, and validate coordinated data infrastructures in order to make health-relevant data interoperable and shareable for research in Switzerland. The sphn RDF schema builds the foundation for all data exchanges within the sphn by integrating semantic information defined in the [sphn dataset](https://sphn.ch/document/sphn-dataset/)."^^ . - "http://www.pathguide.org/fullrecord.php?organisms=all&availability=all&standards=all&order=alphabetic&DBID="^^ . - "SCTID" . - . - "false"^^ . - "basic research" . - . - . - "PF00004"^^ . - "Jackson Laboratories Strain" . - "life science" . - . - . - . - "false"^^ . - . - . - . - . - "genewiki" . - . - . - . - "true"^^ . - . - . - . -_:N324112f3c63245ab8f6b46586714a1c9 "PhenX Admin" . - "small molecule" . - . - . - "https://www.ncbi.nlm.nih.gov/nlmcatalog/$1"^^ . - "dbprobe" . - . - "Jennifer L Harrow" . - . - "cldb" . + . + . + "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$"^^ . + . + . + . + "Vaccine administered code set" . + "http://www.kegg.jp/entry/$1"^^ . + . + . + "cco" . + . + . + . + "gene" . + "true"^^ . + "ontology" . + . + . + "http://www.mirbase.org/cgi-bin/mirna_summary.pl?fam=$1"^^ . "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid="^^ . - . - . - . - . - "lepao" . - . - "^\\d+$"^^ . - "atcc" . + . + "radiology" . + . + . + "Phenol-Explorer" . + . + "false"^^ . + . + . + "BioContext contains modular JSON-LD contexts for bioinformatics data." . + "Hathi Trust Digital Library" . + . + . + "http://sideeffects.embl.de/se/$1"^^ . + . + "agronomy" . + . + . + "baeverma@jcvi.org" . + . + "false"^^ . + "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^ . + "https://n2t.net/$1:$2" . + "life science" . + "false"^^ . + . + . + "life science" . + . + . + "biology" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/WBPhenotype_"^^ . + "Registry of Toxic Effects of Chemical Substances" . + . + "Software Heritage" . + . + . + . + . + . + . + "Ontology that describes data types and image processing operations in Cryo Electron Microscopy of Single Particles"^^ . + . + . + "http://geneontology.org/" . + . + . + . + . + . + "VFDB Gene" . + "^\\d{7}$"^^ . + . + "life science" . + . + "Vitis ontology" . + . + . + . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . + "TubercuList" . + . + . + "false"^^ . + "false"^^ . + . + . + . + "PWY-1042"^^ . + "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=$1"^^ . + . + "knockout" . + "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No="^^ . + . + . + . + . + . + . + "ncbigi" . + . + . + "goldbook" . + . + . + "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an="^^ . + "http://uri.neuinfo.org/nif/nifstd/nlx_chem_$1"^^ . + . + . + . + . + . + "https://cropontology.org/rdf/CO_360:"^^ . + . + "https://purl.uniprot.org/uniprot/$1"^^ . + . + . + "ECMDB00005"^^ . + "http://chembank.broadinstitute.org/chemistry/viewMolecule.htm?cbid="^^ . + . + "true"^^ . + . + . + "The MDM (Medical Data Models) Portal is a meta-data registry for creating, analysing, sharing and reusing medical forms. Electronic forms are central in numerous processes involving data, including the collection of data through electronic health records (EHRs), Electronic Data Capture (EDC), and as case report forms (CRFs) for clinical trials. The MDM Portal provides medical forms in numerous export formats, facilitating the sharing and reuse of medical data models and exchange between information systems."^^ . + . + . + . + . + "GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio."^^ . + "http://scop.berkeley.edu/sccs=$1"^^ . + "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/"^^ . + . + "100101"^^ . + "http://www.w3.org/2000/01/rdf-schema#"^^ . + "biochemistry" . + "https://w3id.org/mixs/"^^ . + . + . + . + "https://civicdb.org/links/molecular_profile/"^^ . + "ontology" . + "FlyBase Controlled Vocabulary" . + "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:"^^ . + . + . + "239287"^^ . + . + "VFG2154"^^ . + . + . + . + "https://civicdb.org/links/evidence/$1"^^ . + "life science" . + "https://www.ebi.ac.uk/biomodels/"^^ . + . + "Reagent Ontology" . + . + . + "ncats.drug" . + "PF11_0344"^^ . + . + "uniprot.var" . + . + . + "bioactivities" . + . + . + "addexbio" . + "repec" . + . + "consulting" . + . + . + "http://purl.org/pav/"^^ . + . + "http://purl.obolibrary.org/obo/AISM_$1"^^ . + "mbaudis@me.com" . + . + "http://purl.obolibrary.org/obo/HP_$1"^^ . + . + . + . + . + . + "systems biology" . + "false"^^ . + . + "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$"^^ . + . + "https://scicrunch.org/resolver/RRID:IMSR_TAC_"^^ . + . + . + . + "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals."^^ . + . + . + . . - "unique academic work identifier assigned in Web of Science bibliographic database (Web of Science Core Collection only and do not include WOS: prefix)"^^ . - "The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing, and other oral-pharyngeal behaviors."^^ . - . - "http://www.case.edu/EpilepsyOntology.owl#$1"^^ . - . - . - "false"^^ . - "Cell Biolabs cell line products" . - . - . - . - . - . - "https://bioregistry.io/wicell:"^^ . - . - _:Ndb2ef7d265d64641aedff7e10678a2d4 . - . - . - . - "exac.transcript" . - . - . - . - . - "chemistry" . - "http://wheat.pw.usda.gov/report?class=gene;name=$1"^^ . - . - . - . - . - "64ba"^^ . - "r.court@ed.ac.uk" . - "^\\d+$"^^ . - . - . - . - "ModelSEED is a platform for creating genome-scale metabolic network reconstructions for microbes and plants. As part of the platform, a biochemistry database is managed that contains reactions unique to ModelSEED as well as reactions aggregated from other databases or from manually-curated genome-scale metabolic network reconstructions."^^ . - "false"^^ . - . - "false"^^ . - . - "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=$1"^^ . - "sequence" . - . - . - . - . - . - . - . - . - "00020007"^^ . - "https://www.gwascentral.org/study/"^^ . - "602"^^ . - "0000004"^^ . - . - "infectious disease medicine" . - . - . - . - . - "gwascentral.marker" . - . - "https://bioregistry.io/registry/"^^ . - . - . - . - . - . - "exac.gene" . - . - . - "https://bioregistry.io/hssp:"^^ . - "https://www.encodeproject.org/"^^ . - "obo" . - . - "^\\d+$"^^ . - . - "epidemiology" . - "FDB MedKnowledge encompasses medications approved by the U.S. Food and Drug Administration, and information on commonly-used over-the-counter and alternative therapy agents such as herbals, nutraceuticals and dietary supplements."^^ . - "^10.\\d{2,9}/.*$"^^ . - . - . - . - "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/$1"^^ . - . - . - . - "265912"^^ . - . - . - "false"^^ . - . - . - "https://doi.org/$1"^^ . - . - . - . - . -_:N274e55f6ea7440dfba8452e0d6b6d9dd "Crop Ontology Helpdesk" . - "Korean Cell Line Bank" . - . - "false"^^ . - "gene expression" . - . - "false"^^ . - "ontology" . - . - "people/11035"^^ . - "NIH HIV Reagent Program" . - . - . - "^HGVPM\\d+$"^^ . - "ontology" . - "ontology" . - . - "false"^^ . - "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=$1"^^ . - . - . - "NITE Biological Research Center (NBRC) provides a collection of microbial resources, performing taxonomic characterization of individual microorganisms such as bacteria including actinomycetes and archaea, yeasts, fungi, algaes, bacteriophages and DNA resources for academic research and industrial applications. A catalogue is maintained which states strain nomenclature, synonyms, and culture and sequence information."^^ . - . - . - . - "^HBG\\d+$"^^ . - "https://www.ebi.ac.uk/intact/interaction/"^^ . - . - . - . - "co_335" . - . - . - . - "false"^^ . - . - "preclinical studies" . + . + "protein" . + "anzctr" . + . + . + "transcriptomics" . + . + "Identifier for an entity in open tree of life"^^ . + . + . + "https://www.gbif.org/species/"^^ . + "https://bioregistry.io/jaxmice:"^^ . + . + "itis" . + "cto" . + "1948"^^ . + "Relation Ontology" . + . + . + . + "^\\w+$"^^ . + . + "protein" . + "admin@envipath.org" . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Spectra Hash Code" . + "Dataset"^^ . + . + . + "3SBPLMKKVEVR"^^ . + . + "C. elegans Small Molecule Identifier Database" . + . + . + . + . + . + "This ontology lists all variables used for woody plant observations. Terms are collected from various sources (past and ongoing projects at national and international levels). Curators: Celia Michotey (INRAE) & Ines Chaves (IBET) - Version 2 submitted on Jun 2020 by INRAE."^^ . + . + . + . + . + . + "true"^^ . + . + "0000127"^^ . + "Types of named geographic features. Applicable also to many unnamed features but reflects the level of detail traditionally shown on maps, so some feature types specified in scientific studies may not be well represented here. Not highly specific."^^ . + . + "PseudoGene" . + . + . + "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/"^^ . + . + "Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries."^^ . + "false"^^ . + . + "nutritional science" . + "genetics" . + . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + "Allergy"^^ . + . + "^\\d+$"^^ . + . + "classification" . + . + . + . + "false"^^ . + . + . + . + . + . + . + "^\\d+$"^^ . + "https://chemkg.github.io/chemrof/$1"^^ . + "http://www.sasbdb.org/data/"^^ . + "fairsharing" . + . + . + . + . + "Terminologia Histologica" . + . + . + . + . + . + . + . + . + . + . + "http://phylomedb.org/?seqid="^^ . + . + "COG Categories" . + . + . + . + "false"^^ . + . + . + "436605"^^ . + . + . + . + "Cardiovascular Disease Ontology" . + . + "http://purl.obolibrary.org/obo/ONS_"^^ . + "^RCB\\d+$"^^ . + "https://www.wwpdb.org/pdb?id="^^ . + "dna" . + . + . + "eff796f3-6195-11e5-8ac5-06603eb7f303"^^ . + "false"^^ . + . + . + "biology" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/MICRO_"^^ . + "An anatomical and developmental ontology for cephalopods"^^ . + "TAIR Gene" . + . + "^C\\d+$"^^ . + . + "eggNOG" . + "false"^^ . + . + . + "^\\d+$"^^ . + . + . + . + "subject agnostic" . + . + . + "enzyme" . + . + . + "Continuous Automated Model Evaluation" . + . + "subject agnostic" . + . + . + . + "EGAS00000000001"^^ . + . + . + . + "cog.pathway" . + . + "0000295"^^ . + . + . + "http://purl.obolibrary.org/obo/EMAPA_"^^ . + . + "http://purl.obolibrary.org/obo/FOODON_$1"^^ . + . + "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=$1"^^ . + . + . + . + "https://www.ebi.ac.uk/compneur-srv/LGICdb/HTML/$1.php"^^ . + . + "false"^^ . + "NLXDYS covers dysfunction, diseases, and disorders. Most classes are also in Disease Ontology (DOID), Monarch Disease Ontology (MONDO), Human Phenotype Ontology (HPO), etc."^^ . + . + "anatomy" . + . + "taxonomy" . + . + . + . + . + . + . + . + . + "Europe PMC Preprints" . + . + . + . + "^\\d+$"^^ . + "The data sources used in xrefs in the ChEBI ontology. More information in the \"Data Sources\" section of [this document](https://docs.google.com/document/d/13_FqP_8qkDdw5RFv5qMYo7xRyfY4xUiuVtLn845A6Io/edit#heading=h.dkfn7xf53tpx)." . + . + "^ISRCTN\\d+$"^^ . + . + . + . + "obo" . + . + . + "CryptoDB" . + "false"^^ . + . + "00030692-0FE1-4A1B-955E-A2E55D659267"^^ . + . + . + . + "cell line" . + . + . + "dashr" . + . + "22-46615880-T-C"^^ . + . + "61467"^^ . + "obo" . + "molecules" . + . + "502930"^^ . + . + . + "0000196"^^ . + "immunology" . + "50885"^^ . + . + . + "false"^^ . + "insdc.gca" . + "https://scicrunch.org/resolver/RRID:BCBC_$1"^^ . + . + . + "virus" . + . + "Vertebrate skeletal anatomy ontology."^^ . + "Supplies biomedical investigators with rat models, embryonic stem cells, related reagents, and protocols they require for their research. In addition to repository, cryostorage and distribution functions, RRRC can facilitate acquisition of rat strains from other international repositories as well as provide consultation and technical training to investigators using rat models. [from RRID]"^^ . + "Microbial Conditions Ontology is an ontology..."^^ . + . + . + . + . + "ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN."^^ . + "Q13485"^^ . +_:Nc976beb3ec914342b8df47f37d623366 "po-discuss@plantontology.org" . + "Yeast Intron Database v4.3" . + . + . + . + "http://modbase.compbio.ucsf.edu/pibase-cgi/get_details.pl?object_type=complexes&bdp_id="^^ . + . + . + . + . + . + "A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON."^^ . + "obo" . + . + "mzspec" . + . + . + . + . + . + . + "ontology" . + "Crystallographic Information Framework" . + "life science" . + . + . + . + "https://cmecscatalog.org/cmecs/classification/unit/$1.html"^^ . + . + . + "The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature."^^ . + . + "bio.tools" . + . + . + . + . + "The International Classification of Functioning, Disability and Health, known more commonly as ICF, is a classification of health and health-related domains. As the functioning and disability of an individual occurs in a context, ICF also includes a list of environmental factors. ICF is the WHO framework for measuring health and disability at both individual and population levels."^^ . + . + "^\\d{3}\\w(\\w|\\d_)\\d{4}X$"^^ . + . + . + "0000001"^^ . + . + . + . + . + "obo" . + "Cell Line Ontology" . + "peff" . + . + "ChEMBL target" . + . + "snornabase" . + . + . + . + . + . + . + . + . + . + . +_:N1994ddc7e4024e5ea4c9252b93225408 "whocc@fhi.no" . + . + "Val Wood" . + . + "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset."^^ . + . + "SED-ML model format" . + . + "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid="^^ . + . + . + . + "https://gnomad.broadinstitute.org/variant/$1"^^ . + "Wes Schafer" . + "false"^^ . + "REPRODUCE-ME Ontology" . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/CIDO_$1"^^ . + . + . + "http://icd9cm.chrisendres.com/index.php?action=search&srchtext="^^ . + . + "0000205"^^ . + . + "G8944"^^ . + . + "Chris Stoeckert" . + . + "Animal Genome Sheep QTL" . + . + "Kristian Axelsen" . + "https://www.ebi.ac.uk/metagenomics/analyses/"^^ . + . + "A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments."^^ . + . + . + . + "false"^^ . + . + . + . + . + "This is the element set of native RDF classes and properties described in the current text (Feb 2009) of the Functional Requirements for Bibliographic Records (FRBR) entity-relationship model. (from https://www.iflastandards.info/fr/frbr/frbrer.html)"^^ . + . + . + . + . + "Vaccine Ontology" . + . + . + . + . + . + "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no="^^ . + "351"^^ . + "Functional Requirements for Bibliographic Records Entity-Relationship Model" . + . + . + "6VDC956"^^ . + "4b848c342a4f4abc871bdf8a09a60807"^^ . + . +_:N092d4e4b63024aba99662c1cea59992d "AGROVOC Team" . + . + "Handle" . + "4007166"^^ . + "snomedct" . + . + . + . + "https://bioregistry.io/abs:"^^ . + . + "classification" . + . + . + . + . + "false"^^ . + "ontology" . + "Gene Ontology Database references" . + . + . + "spd" . + "^A\\d+$"^^ . + . + . + "FAIRsharing Organization" . + "https://www.nextprot.org/db/entry/$1"^^ . + . + . + . + "^ARBA\\d+$"^^ . + . + . + "http://tuberculist.epfl.ch/quicksearch.php?gene+name=$1"^^ . + . + . + "sbml.level-3.version-2"^^ . + . + . + "https://cropontology.org/rdf/CO_367:$1"^^ . + "protein" . + "Abdomen"^^ . + . + "Information for ligand groups (chemical classes)."^^ . + "The academic event ontology, currently still in development and thus unstable, is an OBO compliant reference ontology for describing academic events such as conferences, workshops or seminars and their series. It is being developed as part of the [ConfIDent project](https://projects.tib.eu/confident/) to allow RDF representations of the academic events and series stored and curated in the [ConfIDent platform](https://www.confident-conference.org/index.php/main_page)."^^ . + "MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata."^^ . + . + "11478"^^ . + . + . + . + "http://purl.obolibrary.org/obo/PRIDE_$1"^^ . + . + . + "^[A-Z](\\d+([A-Z]{1,2}(\\d+)?)?)?$"^^ . + . + "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=$1"^^ . + . + . + . + . + . + . + . + . + . + "OSMO is an ontologization and extension of MODA, a workflow metadata standard that constitutes a mandatory requirement within a number of European calls and projects in the context of materials modelling. OSMO was developed within the Horizon 2020 project VIMMP (Virtual Materials Marketplace) and is part of a larger effort in ontology engineering driven by the European Materials Modelling Council, with the European Materials and Modelling Ontology (EMMO) as its core. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . + . + "structure" . + . + "http://purl.uniprot.org/annotation/"^^ . + "umls.aui" . + "gene" . + . + . + . + "The Prescription of Drugs Ontology" . + "organic chemistry" . + . + . + . + . + . + . + . + . + . + . + . + "PD10000"^^ . + . + . + . + "300165/p13898_2106T"^^ . + "development" . + "https://www.ebi.ac.uk/metagenomics/samples/$1"^^ . + . + . + . + . + . + . + "The Bioinorganic Motif Database" . + . + "false"^^ . + . + "Beilstein" . + . + "imke.tammen@sydney.edu.au" . + . + . + "Input data and analysis results for the paper \"Topology of synaptic connectivity constrains neuronal stimulus representation, predicting two complementary coding strategies (https://www.biorxiv.org/content/10.1101/2020.11.02.363929v2 )."^^ . + . + . + . + "genetics" . + . + . + . + . + . + . + . + . + "Animal TFDB Family" . + "protein" . + . + "None"^^ . + . + . + . + . + "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy."^^ . + "jcrb" . + . + . + "https://www.cbioportal.org/patient?studyId=ccle_broad_2019&caseId="^^ . + "knowledge and information systems" . + . + "false"^^ . + . + . + . + . + . + "https://drks.de/search/en/trial/"^^ . + "https://cropontology.org/rdf/CO_357:"^^ . + . + . + . + "The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment.\n\nNote that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D."^^ . + "^\\d+$"^^ . + . + . + . + "life science" . + "NIF Gross Anatomy" . + "http://purl.obolibrary.org/obo/ONTONEO_$1"^^ . + . + . + "https://omim.org/MIM:PS$1"^^ . + "tol" . + "ssbd.dataset" . + . + "swisslipids@isb-sib.ch" . + "AADB12"^^ . + "ontology" . + . + "http://purl.obolibrary.org/obo/FBcv_"^^ . + . + . + . + . + "interaction" . + . + . + "faseb list" . + "Decentralized Identifier" . + "Developing Human Brain Atlas" . + . + . + . + . + . + "http://ensembl.org/glossary/ENSGLOSSARY_"^^ . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . "Web Ontology Language" . - "false"^^ . - . - . - . - "vendor" . - "^\\d+$"^^ . - . - "0000046"^^ . - . - . - . - . - . - . - . - "false"^^ . - "ceph" . - "https://spdx.org/licenses/"^^ . - "genomics" . - . - . - . - . - "https://flybase.org/reports/FBtc"^^ . - "^\\d+$"^^ . - . - . - . - . - . - "genetics" . - "title"^^ . - "owl" . - . - . - . - . - "bitterdb.cpd" . - . - . - . - . - . - . - "^[A-Za-z0-9+_.%-:]+$"^^ . - . - "https://abrc.osu.edu/stocks/number/SALK_"^^ . - . - . - "http://purl.org/spar/c4o/$1"^^ . - "http://purl.obolibrary.org/obo/ZECO_"^^ . - . - "semantic web" . - . - . - . - . - "eukaryotic" . - "dictyBase" . - "ontology" . - . - . - "H-Invitational Database (H-InvDB) is an integrated database of human genes and transcripts. It provides curated annotations of human genes and transcripts including gene structures, alternative splicing isoforms, non-coding functional RNAs, protein functions, functional domains, sub-cellular localizations, metabolic pathways, protein 3D structure, genetic polymorphisms (SNPs, indels and microsatellite repeats), relation with diseases, gene expression profiling, molecular evolutionary features, protein-protein interactions (PPIs) and gene families/groups. This datatype provides access to the 'Transcript' view."^^ . - . - "http://purl.obolibrary.org/obo/MF_$1"^^ . - . - . - "gene function" . - . - . - . - "Salmon Ontology" . - . - . - . - . - . - "data science" . - . - . - . - . - . - "^[1-9]\\d*$"^^ . - . - "geoinformatics" . - "Sugar Kelp trait ontology"^^ . - . - . - . - . - "Orphanet is a reference portal for information on rare diseases and orphan drugs. It’s aim is to help improve the diagnosis, care and treatment of patients with rare diseases."^^ . - . - "ontology" . - "Montana Smith" . - "Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types."^^ . - . - "false"^^ . - "abcam" . - . - "https://www.ebi.ac.uk/intact/search?query="^^ . - . - . - . - "^\\d{4}-\\d{3}[\\dX]$"^^ . - . - . - "https://www.ncbi.nlm.nih.gov/protein/$1"^^ . - . - . - "John-Marc Chandonia" . - . - . - . - "https://www.clinicaltrialsregister.eu/ctr-search/search?query=$1"^^ . - "https://go.drugbank.com/metabolites/"^^ . - . - . - . - "environmental science" . - . - . - . - . - "Prefixes exported for the epidemiology domain knowledge graph in the ASKEM project." . - "idomal" . - . - . - "cba" . + . + "https://omim.org/MIM:PS"^^ . + . + . + "FAO/WHO_standards" . "obo" . - . - "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$"^^ . - . - . - "CORDIS Project" . - . - "obo" . - "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents."^^ . - . - "cell biology" . - . - . - . - . - . - "false"^^ . - . - "genome" . - . - . - . - "phenotyping" . - . - . - "false"^^ . - . - . - . - "https://pharmacodb.ca/cell_lines/$1"^^ . - . - "zebrafish" . - "bs" . - "http://autism.mindspec.org/GeneDetail/"^^ . - "false"^^ . - "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did="^^ . - . - "Frederique Lisacek" . - "https://bio.tools/$1"^^ . - . - . - "codelink" . - "Research Organization Registry" . - "International Standard Book Number" . - "health science" . - "obo" . - . - "chemistry" . - . - . - "The Lexicon is a foundational database with comprehensive drug product and disease nomenclature information. It includes drug names, drug product information, disease names, coding systems such as ICD-9-CM and NDC, generic names, brand names and common abbreviations. A comprehensive list of standard or customized disease names and ICD-9 codes is also included."^^ . - "Infectious Disease Ontology" . - . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . + . + . + "^EBI\\-[0-9]+$"^^ . + . + "InterLex is a dynamic lexicon, initially built on the foundation of NeuroLex (PMID: 24009581), of biomedical terms and common data elements designed to help improve the way that biomedical scientists communicate about their data, so that information systems can find data more easily and provide more powerful means of integrating data across distributed resources and datasets. InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. "^^ . + . + . + . + . + "https://glycopost.glycosmos.org/entry/"^^ . + "p3db.protein" . + "rateRule"^^ . + . + . + . + "fbdv" . + . + "Sierra Moxon" . + . + "false"^^ . + . + . + "https://gpcrdb.org/protein/$1"^^ . + "ACH-000001"^^ . + . + . + . + "CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE."^^ . + . + . + . + . + "protein" . + . + . + . + . + . + . + . + "http://cellimagelibrary.org/images/"^^ . + . + . + "peco" . + . + . + . + . + . + "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB."^^ . + . + . + . + . + "scpd" . + . + . + "biocyc" . + "International Traditional Medicine Clinical Trial Registry" . + . + "HGVST1828"^^ . + . + "ontology" . + . + . + "mouse" . + . + . + "Alistair Miles" . + "/53355/cl010066723"^^ . + "An organization in FAIRsharing, including universities, labs, etc."^^ . + "life science" . + "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/$1"^^ . + . + . + . + . + . + . + . + "mmmp:biomaps" . + . + "YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in Saccharomyces cerevisiae, based on more than 1200 bibliographic references."^^ . + "ontology" . + . + . + "life science" . + "false"^^ . + _:Nbf9b965aeb1945c0929cabc018829bf8 . + . + . + "false"^^ . + "https://europepmc.org/article/CTX/"^^ . + . + . + . + "0000072"^^ . + . + "life science" . + . + . + . + . + "http://pepbank.mgh.harvard.edu/interactions/details/"^^ . + "http://purl.obolibrary.org/obo/MAO_$1"^^ . + . + . + "http://purl.org/ontology/bibo/"^^ . + . + . + . + "BioAssay Ontology" . + . "ontology" . - . - . - . - . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century."^^ . + "interaction" . + "Database of Macromolecular Interactions" . + . + . + . + "Chinese Biological Abstracts" . + . + "mcourtot@gmail.com" . + . + . + . + . + . + . + . + . + . + . + "The NCBI BioSystems database centralizes and cross-links existing biological systems databases, increasing their utility and target audience by integrating their pathways and systems into NCBI resources."^^ . + . + "https://senselab.med.yale.edu/ModelDB/ModelList?id=$1"^^ . + "Selventa Chemicals" . + "21723"^^ . + . + . + . + . + . + . + . + "https://portal.gdc.cancer.gov/cases/$1"^^ . + "bioinformatics" . + "http://purl.obolibrary.org/obo/OMIABIS_"^^ . + . + . + "genome" . + "http://www.wikidata.org/entity/$1" . + . + . + "protein" . + "http://bugs.sgul.ac.uk/bugsbase/tabs/protocol.php?action=view&protocol_id="^^ . + "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species."^^ . + . + . + . + . +_:Nbeca5cf2048d406d84b6c71368a16938 "biomodels-net-support@lists.sf.net" . + . + "huge" . + "Curated Drug-Drug Interactions Database - Drug" . + "Shur-Jen Wang" . + . + . + "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id="^^ . + . + . + . + . + . + "classification-model"^^ . + . + "0000046"^^ . + . + . + "atfdb.family" . + "ietf.language" . + "^\\d\\w+$"^^ . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + . + . + . + "obo" . + "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?$1"^^ . + "0000000"^^ . + . + "ontology" . + "^\\d+$"^^ . + "pubchem.aid" . + . + . + . + "OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles."^^ . + . + . + . + . + . + . + "SEED Compound" . + . + . + . + "subject agnostic" . + . + . + . + "iresite" . + . + "structure" . + . + "false"^^ . + . + "Maize Trait Dictionary in template 5 - CIMMYT- September 2016"^^ . + . + . + "http://purl.obolibrary.org/obo/ECAO_"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "cell biology" . + "false"^^ . + "frbr" . + . + . + . + . + . + . + . + . + "mirEX" . + "Protein Alignment organised as Structural Superfamily" . + . + "http://emmo.info/emmo/cif-core#"^^ . + . + "Ontology of Host Pathogen Interactions" . + "Ontology for vector surveillance and management" . + "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . + "endocrinology" . + . + "Registry of Research Data Repositories" . + . + . + . + "http://www.w3.org/2002/07/owl#"^^ . + "false"^^ . + . + . + . + . + "Tim Robertson" . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OMIT_$1"^^ . + . + . + "Common Terminology Criteria for Adverse Events" . + "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$"^^ . + . + . + "obo" . + "David Osumi-Sutherland" . + "https://cropontology.org/rdf/CO_335:"^^ . + . + . + . + "ontology" . + "false"^^ . + "HIP000030660"^^ . + . + . + "false"^^ . + "false"^^ . + . + . + . + . + . + . + . + "tissue" . + "false"^^ . + . + "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id="^^ . + . + . + . + "ontology" . + . + . + . + . + . + "Database that provides a central location for scientists to browse uniquely observed proteoforms and to contribute their own datasets."^^ . + . + . + . + . + "^\\d+$"^^ . + "peteremidford@yahoo.com" . + "zoology" . + . + . + . + . + "mamo" . + . + . + . + "puro" . + . + . + . + . + "http://purl.obolibrary.org/obo/MPIO_"^^ . + . + . + . + . + . + . + "life science" . + "http://purl.obolibrary.org/obo/MC_$1"^^ . + . + . + . + . + . + . + . + "biodiversity" . + "false"^^ . + "multicellds" . + . + . + "E-cyanobacterium rule" . + . + "PubChem Element" . + . + "false"^^ . + "taxonomy" . + . + . + "false"^^ . + . + . + . + . + . + . + "dna" . + . + "statistics" . + "biomedical science" . + . + "biomedical science" . + "O08709"^^ . + . + "GenInfo Identifier" . + . + . + . + "ontology" . + "77"^^ . + . + . + "^\\w+$"^^ . + "ontology" . + . + . + . + . + . + . + . + . + "false"^^ . + . + "^[0-9]+$"^^ . + "F45.21"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "0000001"^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/MSIO_$1"^^ . + "false"^^ . + "biomedical science" . + . + "Lutz Fischer" . + . + . + . + "DSSTox substance" . + . + "true"^^ . + "http://www.gramene.org/db/literature/pub_search?ref_id=$1"^^ . + . + "hgmd" . + . + "Database contains all publicly available HMS LINCS datasets and information for each dataset about experimental reagents (small molecule perturbagens, cells, antibodies, and proteins) and experimental and data analysis protocols."^^ . . - . - . - . - . - "pmr.workspace" . - . - . - "false"^^ . - "https://bioregistry.io/genpept:"^^ . - "false"^^ . - "PhenX Toolkit" . - . - . - "mice" . - . - . - . - "nmckenna@bcm.edu" . - "BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scientists in their analysis of the structure, dynamics, and chemistry of biological systems and to support further development of the field of biomolecular NMR spectroscopy."^^ . - "^\\d+$"^^ . - "http://metlin.scripps.edu/metabo_info.php?molid=$1"^^ . - . - . - "oba" . - "Leen Vandepitte" . - . - . - . - "false"^^ . - . - "^[A-Z_0-9]+$"^^ . - . - "The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community (from https://gnomad.broadinstitute.org)."^^ . - . - . - "protein" . - "https://www.ebi.ac.uk/pdbe/entry/emdb/$1"^^ . - "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1"^^ . - . - . - . - "COMe (Co-Ordination of Metals) at the EBI represents an ontology for bioinorganic and other small molecule centres in complex proteins, using a classification system based on the concept of a bioinorganic motif."^^ . - . - . - . - . - . - "A type for entries in the Bioregistry's metaregistry." . - . - "^\\d{6,8}$"^^ . - "Name Reaction Ontology" . - "Thermo Fisher Scientific" . - "pathway" . - . - "gene expression" . - . - . - . - "ProGlycProt" . - "^\\d+$"^^ . - "NCBI_GeneID" . - "casspc" . - . - "http://purl.obolibrary.org/obo/ZP_"^^ . - "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies."^^ . - "false"^^ . - . - . - . - . - . - "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results."^^ . - "Expression"^^ . - "epidemiology" . - "VMH Gene" . - . - . - . - . - . - "http://caps.ncbs.res.in/cgi-bin/mini/databases/gendis/sf.cgi?code="^^ . - "Database of Genotypes and Phenotypes" . - "https://cropontology.org/rdf/CO_322:"^^ . - "false"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "^NBK\\d+$"^^ . - . + . + "kisao" . + . + . + . + . + . + "easychair.cfp" . + . + . + "MAO:0000061"^^ . + . + . + . + . + . + . + . + . + . + "embryo" . + "Teleost Anatomy Ontology" . + "AB016785"^^ . + "metabolomics" . + . + "vdrc" . + . + . + "ontology" . + "agriculture" . + . + . + "^\\d+$"^^ . + "David Gloriam" . + "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=$1"^^ . + . + "01406"^^ . + "biocarta.pathway" . + "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . + "http://www.case.edu/EpilepsyOntology.owl#$1"^^ . + . + . + "ExAC Gene" . . - . - . - "NanoParticle Ontology" . - . - . - "agriculture" . - . - "ontology" . - . - . - . - "https://www.biolegend.com/Default.aspx?ID=6664&productid="^^ . - . - . - . - . - "http://www.co-ode.org/ontologies/galen#"^^ . - . - "ontology" . - "ensemblglossary" . - . - . - . - . - . - . - "ascl" . - . - . - . - "ontology" . - . - . - . - "https://go.drugbank.com/indications/"^^ . - "ensembl" . - . - "biomedical science" . - "National Repository of Fish Cell Lines" . - . - . - . - "genprop" . - "https://www.gbif.org/species/$1"^^ . - . - "rna" . - "Conserved Domain Database at NCBI" . - . - "http://purl.obolibrary.org/obo/ADO_"^^ . - . - . - . - "https://www.nextprot.org/term/"^^ . - . - "false"^^ . - . - "bams" . - . - . - "^(SMP|PW)\\d+$"^^ . + . + . + . + "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc="^^ . + . + "nlx.mol" . + . + . + "policy" . + "ICEberg family" . + . + . + . + . + "omrse" . + "Identifier (name code) for a taxon in the catalogue of life in taiwan"^^ . + . + . + . + . + . + "false"^^ . + . + "ppo" . + . + . + . + . + . + . + . + . + "life science" . + "NCT" . + . + . + . + "Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents. The information includes chemical compounds, chemical reactions, chemical properties, related bibliographic data, substance data with synthesis planning information, as well as experimental procedures from selected journals and patents. It is licensed by Elsevier."^^ . + . + . + . + . + "http://purl.obolibrary.org/obo/NGBO_"^^ . + . + . + "Genomic Distribution of structural Superfamilies identifies and classifies evolutionary related proteins at the superfamily level in whole genome databases."^^ . + . + . + . + "life science" . + . + "http://purl.obolibrary.org/obo/FLOPO_"^^ . + "Cell line collections (Providers)"^^ . + . + "molecule" . + . + . + "ND50028"^^ . + . + "https://www.google.com/patents/"^^ . + . + . + "Name-to-Thing" . + "16129"^^ . + . + "^\\d+$"^^ . + "false"^^ . + "^[A-Z]+[0-9]+$"^^ . + . + . + "genetic analysis" . + . + . + . + . + . + . + "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=$1"^^ . + . + . + "true"^^ . + "false"^^ . + "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$"^^ . + "subject agnostic" . + "http://purl.obolibrary.org/obo/PECO_"^^ . + "ontology" . + "Minid are identifiers used to provide robust reference to intermediate data generated during the course of a research investigation."^^ . + . + . + "polysaccharide" . + . + "jkissing@uga.edu" . + . + "false"^^ . + . + . + . + "https://www.sharkipedia.org/species/$1"^^ . + "agrovoc" . + . + . + . + . + . + "The Data Science Ontology is a research project of IBM Research AI and Stanford University Statistics. Its long-term objective is to improve the efficiency and transparency of collaborative, data-driven science."^^ . + "subject agnostic" . + . + "google.patent" . + "false"^^ . + . + . + . + . + . + . + "Ion Channel Electrophysiology Ontology" . + . + . + . + . + "Minimal set of terms for anatomy"^^ . + "http://uri.neuinfo.org/nif/nifstd/oen_$1"^^ . + . + "reproduceme" . + "161671"^^ . + "MultiCellDS Digital Cell Line" . + "genetics" . + "^[0-9]+$"^^ . + _:N330735ffe9774476b795effe4f9d071f . + . + . + "http://purl.obolibrary.org/obo/MFOMD_$1"^^ . + "G77500AY"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + "Ribocentre is designed to contain comprehensive information of all natural ribozymes."^^ . + . + "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines."^^ . + "eukaryotic" . + . + . + "PDB_CHEM_ID" . + . + . + "MESH" . + "yrcpdr" . + . + . + "Prefix.cc" . + . + . + . + . + . + . + . + . + . + . + . + "The Ontology for Parasite Lifecycle (OPL) models the life cycle stage details of various parasites, including Trypanosoma sp., Leishmania major, and Plasmodium sp., etc. In addition to life cycle stages, the ontology also models necessary contextual details, such as host information, vector information, and anatomical location. OPL is based on the Basic Formal Ontology (BFO) and follows the rules set by the OBO Foundry consortium."^^ . + "Sri Lanka Clinical Trials Registry" . + . + "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val="^^ . + . + . + "obo" . + . + . + "ontology" . + "false"^^ . + "A category denoting a rather broad domain or field of interest, of study, application, work, data, or technology. Topics have no clearly defined borders between each other."^^ . + . "dna" . - . - "16"^^ . - "0000041"^^ . - . - . - "biomedical science" . - "Zebrafish Experimental Conditions Ontology" . - . - . - . - . - "life science" . - . - "^CL\\d+$"^^ . - . - . - . - . - "^\\d+$"^^ . - "0007133"^^ . - . - "functional genomics" . - "^\\d+$"^^ . - . - "agriculture" . - . - . - "Terminologia Histologica" . - . - "tissue" . - "ModelDB concept" . - "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species."^^ . - "A gazetteer constructed on ontological principles. The countries are actively maintained."^^ . - "^\\d+$"^^ . - . - "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=$1"^^ . - . - "hdl" . - . - "^[a-zA-Z]+.+$"^^ . - "false"^^ . - . - . - "life science" . - "false"^^ . - "NIH Human Embryonic Stem Cell Registry" . - . - "true"^^ . - . - . - "genome" . - . - "biology" . - . - . - "obo" . - "false"^^ . - . - . - . - . - . - "https://bionumbers.hms.harvard.edu/bionumber.aspx?id="^^ . - . - . - . - . - "Gene"^^ . - "http://purl.jp/bio/4/id/$1"^^ . - . - "doqcs.pathway" . - . - . - "The ODRL Vocabulary and Expression defines a set of concepts and terms (the vocabulary) and encoding mechanism (the expression) for permissions and obligations statements describing digital content usage based on the ODRL Information Model."^^ . - . - . - "biodiversity" . -_:N040aa6c5b3974c7da6cda302541b8bb3 "Plant Ontology Administrators" . - . - . - . - "false"^^ . - . - "AcknowledgementCondition"^^ . + . + "InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mouse and bovine) innate immune response. Its goal is to provide a manually-curated knowledgebase of the genes, proteins, and particularly, the interactions and signaling responses involved in mammalian innate immunity. InnateDB incorporates information of the whole human, mouse and bovine interactomes by integrating interaction and pathway information from several of the major publicly available databases but aims to capture an improved coverage of the innate immunity interactome through manual curation."^^ . + . + . + . + "umbbd.enzyme" . + . + "ontology" . + "http://purl.obolibrary.org/obo/TGMA_$1"^^ . + . + "chemistry" . + . + . + . + . + . + "Reactions in drugbank"^^ . + "xco" . + . + "https://biopragmatics.github.io/providers/cvx/"^^ . + . + . + "obo" . + . + . + . + . + . + . + . + "EJH014"^^ . + . + . + . + . + "false"^^ . + "http://www.mgc.ac.cn/cgi-bin/ShiBASE/ShiBASE_query.cgi?synonym=$1"^^ . + "^\\d+$"^^ . + "developmental biology" . + "RiceNetDB miRNA" . + . + "The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts."^^ . + "PR000001"^^ . + . + . + . + "miR-1"^^ . + . + "protein" . + . + . + . + "obo" . + . + "Anatomical Therapeutic Chemical Vetinary" . + "LexicalMatching"^^ . + "chebi" . + "thesaurus" . + . + . + "false"^^ . + . + "The Barcode of Life Data System (BOLD) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. The associated taxonomy browser shows the progress of DNA barcoding and provides sample collection site distribution, and taxon occurence information."^^ . + . + "http://www.genome.jp/dbget-bin/www_bget?ec:$1"^^ . + "biology" . + . + "sequence" . + "RepeatsDB Protein" . + "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . + "life science" . + "NXPFA" . + "The Ontology of Genes and Genomes" . + . + . + "Sequence-Structural Templates of Single-member Superfamilies" . + "pdbe" . "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes."^^ . - . - "Cancer Cell Line Encyclopedia Cells" . - . - . - "Brendan MacLean" . - . - "^D\\d{4}$"^^ . - "jiezheng@pennmedicine.upenn.edu" . - "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_$1"^^ . - . - "health science" . - . - . - "obo" . - . - "domain" . - . - . - . - . - "e999"^^ . - . - "biomedical science" . - "^\\d+$"^^ . - "Sustainable Development Goals Interface Ontology" . - "https://web.expasy.org/cellosaurus/cellopub/$1"^^ . - "Cell line collections (Providers)"^^ . - "false"^^ . - . - . - . - . - . - . - "owl" . - . - . - . - "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off"^^ . - . - "protein" . - . - . - "40565"^^ . - "pharmvar" . - . - . - . - "https://bioregistry.io/dragondb.dna:"^^ . - . - . - . - . - . - "PepBank Peptide Database" . - . - . - . + "Global Biodiversity Information Facility" . + . + "computational chemistry" . + . + . + "AAA35559"^^ . + . + . + . + . + "http://flypush.imgen.bcm.tmc.edu/pscreen/details.php?line="^^ . + . + "unique identifiers" . + "Willy Wong" . + . + . + . + . + . + "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term="^^ . + . + "false"^^ . + "^[0-9a-z_-]+$"^^ . + "Inge Jonassen" . + . + . + . + "Pierre Grenon" . + "ontology" . + . + "systems biology" . + . + . + "clinvar.variation" . + . + "An OBO-compliant ontology representing the entities referenced by the SDGs, their targets, and indicators."^^ . + "UniProt Resource" . + . + . + . + . + . + . + . + "gene" . + . + . + . + "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references 'biography' information."^^ . + . + "MIRBASE_FAMILY" . + . + "ontology" . + "http://www.ebi.ac.uk/astd/geneview.html?acc=$1"^^ . + "false"^^ . + "virology" . + "false"^^ . + . + "euclinicaltrials" . + "false"^^ . + . + "BatchelorC@rsc.org" . + . + "false"^^ . + "PjrpzUIAAAAJ"^^ . + "phylogenomics" . + . + . + . + . + "WoRMS-ID for taxa" . + . + . + . + . + "https://www.uniprot.org/journals/"^^ . + . . - . - . - "Yoshiharu Y. Yamamoto" . - "environmental science" . - "false"^^ . - . - . - "RDF Schema" . - "Comparative Data Analysis Ontology" . - . - . - . - . - "sewilson@lbl.gov" . - . - "http://www.w3.org/ns/shacl#"^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - . - . - "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])$"^^ . - . - . - "embryonic stem cell" . - . - "false"^^ . - "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID="^^ . - "bioinformatics" . - "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name="^^ . - "true"^^ . - "environmental science" . - "Index Fungorum" . - "ndex" . - . - . - . - "false"^^ . - "The Informed Consent Ontology (ICO) is an ontology for the informed consent and informed consent process in the medical field."^^ . - . - "SMP0000219"^^ . - . - . - . - "false"^^ . - "https://signor.uniroma2.it/relation_result.php?id=$1"^^ . - "false"^^ . - . - . - "ontology" . - "reactome" . - . - "false"^^ . - . - . - "http://immunet.cn/bdb/index.php/mimoset/"^^ . - . - "false"^^ . - "false"^^ . - . - . - "MetaCyc" . - "Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms."^^ . - . - "false"^^ . - . - . - . - "^\\d{7}$"^^ . - "A nomenclatural ontology for biological names" . - . - . - . - . - . - . - . - . - . - . - "An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease."^^ . - "811"^^ . - "DataCollection"^^ . - "covid19" . - "Fly taxonomy" . - . - "Lindsay.Cowell@utsouthwestern.edu" . - . - "pdb.ligand" . - . - . - . - "Software Heritage is the universal archive of software source code."^^ . - . - . - "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive."^^ . - "LINCS Cell" . - "PASS01237"^^ . - "ChEMBL target" . - . - . - . - "http://lincsportal.ccs.miami.edu/datasets/#/view/$1"^^ . - . - . - "^\\w+$"^^ . - "https://nanbyodata.jp/disease/NANDO:$1"^^ . - "Chris Mungall" . - . - "genotyping" . - "molecule" . - . - . - . - "true"^^ . - . - . - . + . + . + . + . + . + . + "https://w3id.org/semapv/vocab/"^^ . + . + . + . + "Ontology"^^ . + . + "mod" . + . + . + . + "http://purl.obolibrary.org/obo/NBO_$1"^^ . + . + "molecular neuroscience" . + "000177759000002"^^ . + . + "post-translational modification" . + . + "002678"^^ . + . + "Alpha Tom Kodamullil" . + . + . + "^\\d+$"^^ . + . + . + . + "http://purl.obolibrary.org/obo/CDNO_"^^ . + "chemical" . + . + . + "174"^^ . + "genetics" . + . + . + "anatomy" . + . + "ZINC1084"^^ . + . "arXiv is an e-print service in the fields of physics, mathematics, non-linear science, computer science, and quantitative biology."^^ . + . + . + . + . + . + "subject agnostic" . + "idoo" . + "Chlamydia"^^ . + . + . + . + "19"^^ . + "http://www.fao.org/gsfaonline/additives/details.html?id=$1"^^ . + . + . + "wyeth@cmmt.ubc.ca" . + . + . + . + "Chickpea ontology" . + . + . + "phosphosite.residue" . + . + . + . + . + . + "Simple Knowledge Organization System" . + . + "https://bacdive.dsmz.de/strain/"^^ . + . + "Virtual International Authority File" . + "obo" . + . + "https://smid-db.org/smid/"^^ . + "0000288"^^ . + . + "co_333" . + "MAR11851"^^ . + "antibody" . + "bams" . + . + . + . + "rrrc" . + "gene" . + "http://cegg.unige.ch/orthodb/results?searchtext=$1"^^ . + . + . + "http://www.conoserver.org/?page=card&table=protein&id=$1"^^ . + . + . + . + . + "false"^^ . + . + . + "false"^^ . + "^\\d+$"^^ . + "true"^^ . + "genotype" . + "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/"^^ . + . + "http://sideeffects.embl.de/drugs/"^^ . + . + "^[A-Za-z0-9]+$"^^ . + . + "World Wildlife Fund Ecoregion" . + "https://www.storedb.org/?STOREDB:DATASET$1"^^ . + "0000485"^^ . + . + "neuroscience" . + "structure" . + "false"^^ . + . + . + . + . + . + "Performance Summary Display Ontology" . + . + . + "^[a-zA-Z0-9-_]+$"^^ . + "nutritional science" . + "neuroscience" . + . + . + . + . + "stap" . + . + "obo" . + "protein families" . + "KEGG BRITE" . + "false"^^ . + "subject agnostic" . + . + "sabiork.compound" . + "https://herv.img.cas.cz/s/$1"^^ . + . + "7499841"^^ . + . + . + . + . + . + . + . + . + "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=$1"^^ . + "AKR-270"^^ . + . + . + "5fce9b7300001250"^^ . + . + . + . + "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n"^^ . + "kristian.axelsen@sib.swiss" . + "medical informatics" . + . + . + "0000423"^^ . + . + "B2067"^^ . + "poro" . + "https://repeatsdb.org/protein/$1"^^ . + "Biosapiens Protein Feature Ontology" . + . + "^\\d+$"^^ . + . + . + "tropicalis" . + . + . + . + . + "ontology" . + . + . + . + "^[0-9a-zA-Z\\.\\-\\_]+$"^^ . + . + . + . + . + . + "Dengue Fever Ontology" . + . + . + "protein" . + . + "RCV000033555.3"^^ . + . + . + . + "The EOL ontology describes environmental conditions of livestock farms. More specifically, it describes the feeding modalities, the environment, the structure of livestock farms and rearing systems."^^ . + . + . + . + . + "https://bioportal.bioontology.org/ontologies/CCF/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fccf%2F"^^ . + "molecular chemistry" . + "Influenza Ontology" . + "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. It focuses on high-quality ITS sequences generated from fruiting bodies collected and identified by experts and deposited in public herbaria. Entries may be supplemented with metadata on describing locality, habitat, soil, climate, and interacting taxa."^^ . + "zoology" . + . + . + . + "glycomics" . + . + . + . + . + "SNOWMEDCT" . + "^\\d{7}$"^^ . + . + "Google Scholar Researcher" . + . + "CC-BY-1.0"^^ . + . + . + "http://modelseed.org/biochem/reactions/"^^ . + . + . + . + "false"^^ . + . + . + . + "seed" . + . + "bigg.compartment" . + . + . + "false"^^ . + "odc.tbi" . + . + . + . + . + . + . + . + . + . + "structure" . + . + . + . + . + . + "obo" . + . + . + "D0001"^^ . + "https://sed-ml.org/urns.html#format:"^^ . + "botany" . + . + "http://fossilworks.org/?a=taxonInfo&taxon_no="^^ . + . + . + . + "^WB[A-Z][a-z]+\\d+$"^^ . + "cghdb" . + "https://scicrunch.org/resolver/RRID:NXR_"^^ . + . + . + "http://cellimagelibrary.org/images/$1"^^ . + . + . + . + . + "obo" . + . + . + . + "^\\d+$"^^ . + . + . + . + "false"^^ . + . + . + . + "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information."^^ . + . + . + "2170610"^^ . + . + "https://terminology.hl7.org/CodeSystem-v3-"^^ . + "inbred" . + "^\\d+$"^^ . + "pharmgkb.gene" . + . + "false"^^ . + . + . + "life science" . + "http://biobanknetwork.telethon.it/Sample/View?sampleId=$1"^^ . + "pandit" . + . + . + . + . + . + . + . + "gramene.qtl" . + "Symptom Ontology" . + . + "The International Genome Sample Resource (IGSR) was established to ensure the ongoing usability of data generated by the 1000 Genomes Project and to extend the data set. The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data. As the project ended, the Data Coordination Centre at EMBL-EBI has received continued funding from the Wellcome Trust to maintain and expand the resource. IGSR was set up to do this and has the following aims: ensure the future access to and usability of the 1000 Genomes reference data; incorporate additional published genomic data on the 1000 Genomes samples; and expand the data collection to include new populations not represented in the 1000 Genomes Project."^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "US4145692"^^ . + "https://www.findacode.com/code.php?set=ICD10PCS&c=$1"^^ . + . + . +_:N81e62e4253624b5f99ab3c6a630b2315 "helpdesk@cropontology-curationtool.org" . + . + "^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\\.[0-9]))?))$"^^ . + "1351341"^^ . + "false"^^ . + . + . + . + "HD+118-001"^^ . + "M00002"^^ . + . + . + "^\\d{10}$"^^ . + . + "http://bugs.sgul.ac.uk/bugsbase/tabs/experiment.php?action=view&expt_id="^^ . + . + "ontology" . + . + . + . + . + "https://www.ebi.ac.uk/chembl/cell_line_report_card/"^^ . + "http://plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + . + "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."^^ . + . + "protein" . + . + . + "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=$1"^^ . + . + . + "DBCOND0066902"^^ . + . + "imgt.ligm" . + . + . + "pina" . + "ontology" . + "The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information."^^ . + . + . + "false"^^ . + . + . + . + "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=$1"^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + "false"^^ . + . + "^\\d+$"^^ . + . + . + "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:"^^ . + . + . + "https://cropontology.org/rdf/CO_370:$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/PDRO_"^^ . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/snp/"^^ . + "ontology" . + "^/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$"^^ . + "gene" . + . + "The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment."^^ . + . + . + . + . + . + "false"^^ . + "hPSCreg is a freely accessible global registry for human pluripotent stem cell lines (hPSC-lines)."^^ . + . + . + "false"^^ . + "https://vac.niaid.nih.gov/view?id="^^ . + . + . + . + . + . + . + . + . + "https://www.uniprot.org/uniref/$1"^^ . + . + "0000124"^^ . + . + . + . + . + . + . + . + . + "graingenes.symbol" . + "Chemical Component Dictionary" . + . + "genome" . + . + . + . + . + . + . + . + . + . + . + . + . + "Wormbase Gene" . + "false"^^ . + . + . + . + . + . + . + "nrfc" . + "Transcriptional Regulatory Element Database (TRED) has been built in response to increasing needs of an integrated repository for both cis- and trans- regulatory elements in mammals, and the lack of such resources at present."^^ . + . + . + . + . + . + . + . + . + . + "SKIP is aiming to promote the exchange of information and joint research between researchers by aggregating various information of stem cells (iPS cells, iPS cells derived from patients, etc.) to stimulate research on disease and regenerative medicine."^^ . + . + . + . + . + . + . + . + . + "datacite" . + . + . + . + . + "An organization" . + . + "90806"^^ . + "https://www.pharmvar.org/gene/"^^ . + . + "KEGG.EDRUG" . + . + "http://www.unimod.org/modifications_view.php?editid1="^^ . + . + . + "co_331" . + "HIX0004394"^^ . + . + "tgv139393198"^^ . + . + . + "http://purl.bioontology.org/ontology/HOIP/HOIP_$1"^^ . + "life science" . + "rna" . + "^[0-9]+\\.[0-9]+$"^^ . + "ontology" . + "0019171"^^ . + "iao" . + "http://purl.dataone.org/odo/SENSO_$1"^^ . + . + . + . + . + . + "xenbase" . + . + "http://darcsite.genzentrum.lmu.de/darc/view.php?id=$1"^^ . + "Information system with taxonomic data on plants, animals, fungi, and microbes of North America and the world."^^ . + "j.harry.caufield@gmail.com" . + . + . + . + . + . + . + . + . + . + "wes_schafer@merck.com" . + . + . + "protein" . + . + . + . + . + "urgi-contact@versailles.inra.fr" . + "Vienna Drosophila Resource Center" . + . + . + "false"^^ . + . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1"^^ . + . + "chemistry" . + . + . + "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name="^^ . + "data model" . + . + "gold.meta" . + . + . + . + "KEGG Reaction" . + . "metabolomics" . - "mutant" . - . - . - . - "bibliography" . - . - "EHDAA:2185"^^ . - . - . - "http://purl.obolibrary.org/obo/INO_"^^ . - "stacia@stanford.edu" . - . - . - "false"^^ . - . - . - "false"^^ . - "obo" . - "false"^^ . - . - "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions."^^ . - . - "http://www.gramene.org/db/qtl/qtl_display?qtl_accession_id="^^ . - . - . - . - "true"^^ . - . - . - "true"^^ . - "2019-08-03_00000089_1"^^ . - . - . - . - . - "The ALlele FREquency Database" . - "5fce9b7300001250"^^ . - "^[-\\w]+(?:\\/[-\\w]+)(?:\\/\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b)$"^^ . - . - . - . - . - "false"^^ . - "NOR00681"^^ . - . + . + "http://stitch.embl.de/interactions/"^^ . + . + "The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation."^^ . + "Cotton ontology" . + . + . + "46"^^ . + . + . + "M58335"^^ . + . + . + "https://caninecommons.cancer.gov/#/study/"^^ . + "National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). [from RRID]"^^ . + "https://bioregistry.io/metaregistry/scholia/$1"^^ . + "^[0-9][A-Za-z0-9]{3}$"^^ . + "genome" . + . + "Collembola Anatomy Ontology" . + . + . + . + "https://bioregistry.io/smiles:"^^ . + . + "Plant Trait Ontology" . + "https://www.re3data.org/repository/"^^ . + "inchi" . + "https://bioregistry.io/resolve/github/issue/"^^ . + "preclinical studies" . + "http://w3id.org/owlstar/$1"^^ . + "enzyme" . + "Cell Line Database" . + . + . + "^\\d+$"^^ . + "modeldb" . + . + . + . + . + "BitterDB Receptor" . + . + . + . + . + . + . + . + "Plant Experimental Conditions Ontology" . + . . - "botany" . - "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:"^^ . - "MolMeDB" . - . - . - . - . - . - . - . - . - . - . - . - . - . - "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC="^^ . - "true"^^ . - "https://www.novusbio.com/products/"^^ . - . - "https://civicdb.org/links/gene/"^^ . - . - "false"^^ . - . - "Dictybase Gene" . + . + "https://cropontology.org/rdf/CO_327:"^^ . + "The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase."^^ . + "OncoTree" . + . + . + "^\\d+$"^^ . +_:N092d4e4b63024aba99662c1cea59992d "agrovoc@fao.org" . + "https://labsyspharm.github.io/lspci/"^^ . + . + "Joint Genome Institute Proposals" . + . + . + . + "medical informatics" . + . + "^\\w.+$"^^ . + . + "omid" . + "3447"^^ . + "Wyeth W. Wasserman" . + . + . + "Identifiers.org" . + . + "https://sorgerlab.github.io/famplex/"^^ . + "RGD Disease Ontology" . + . + . + "false"^^ . + . + . + "RiceNetDB Protein" . . - . - . - "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - . - "false"^^ . - "The conference-ontology is a new self-contained ontology for modelleing knowledge about conferences. The conference-ontology adopts best ontology design practices (e.g., Ontology Design Patterns, ontology reuse and interlinking) and guarantees interoperability with SWC ontology and all other pertinent vocabularies. (from homepage)"^^ . - "phenotype" . - "disorders" . - . - . - . - "dna" . - "false"^^ . - "obo" . - . - "https://www.fisheries.noaa.gov/species/$1"^^ . - "protocol" . - . - . - "henrich@embl.de" . - "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations."^^ . - . - . - "0000008"^^ . - . - "https://cropontology.org/rdf/CO_358:"^^ . - "PA448710"^^ . - . - "NIF Standard Ontology: Qualities" . - . - "http://aps.unmc.edu/AP/database/query_output.php?ID=$1"^^ . - "false"^^ . - . - . - . - "https://flowrepository.org/id/"^^ . - . - . - . - . - . - . - . - . - . - . - "http://www.kegg.jp/entry/$1"^^ . - "Medaka fish anatomy and development" . - "sabiork.compound" . - "The Cuban Public Registry of Clinical Trials (RPCEC) is a website with a database of clinical trials, with national coverage. It was established in 2007 under the leadership of the National Coordinating Center of Clinical Trials (CENCEC) and with INFOMED collaboration. (from homepage)"^^ . - . - "true"^^ . - . - "http://purl.org/cerif/frapo/"^^ . - "BiGG Metabolite" . - "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$"^^ . - . - "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$"^^ . - "^\\d{7}$"^^ . - . - "0000066"^^ . - "epidemiology" . - "ChEMBL_ID" . - . - "cheminformatics" . - . - . - "https://omia.org/OMIA$1"^^ . - "biomedical science" . - "Ontology about C. elegans and other nematode phenotypes"^^ . - . - . - "ontology" . - "plant anatomy" . - "0187632"^^ . - . - "false"^^ . - . - . - . - . - "AgroPortal" . - . - "Decentralized Biomedical Ontology" . - . - . - "life science" . - "biochemistry" . - . - "dna" . - . - . - . - . - "Datasets inside StoreDB"^^ . - . - . - "kclb" . - . - "http://edamontology.org/topic_"^^ . - "SBGN bricks represent biomolecular or biological concepts. BKO formally associates bricks with the concepts they represent. BKO includes terms that describe concepts, the template bricks representing these concepts, and categories that gather bricks in a broader way."^^ . - "http://ctdbase.org/detail.go?type=disease&db=MESH&acc="^^ . - . - . - "The set of prefixes used in the Cellosaurus resource"^^ . - . - "false"^^ . - . - "TubercuList" . - "false"^^ . - "mgnify.samp" . - "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins."^^ . - "subject agnostic" . - "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases allow the access to information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . - . - . - . - "Daniel C. Berrios" . - "false"^^ . - "false"^^ . - . - "Quinoa Ontology ontology" . - "pesticides" . - "false"^^ . - "mfmo" . - . - "false"^^ . - . - "The Veterans Health Administration is America’s largest integrated health care system, providing care at 1,293 health care facilities, including 171 medical centers and 1,112 outpatient sites of care of varying complexity (VHA outpatient clinics), serving 9 million enrolled Veterans each year."^^ . - "^OSR\\d{4}$"^^ . - . - "http://purl.obolibrary.org/obo/OOSTT_"^^ . - . - . - "Addgene Plasmid Repository" . - . - . - . - "oma.grp" . - . - . - . -_:Nf7e91c76916647ba99dee0cb63cf2da8 "Crop Ontology Helpdesk" . - . - . - . - "BugBase is a MIAME-compliant microbial gene expression and comparative genomic database. It stores experimental annotation and multiple raw and analysed data formats, as well as protocols for bacterial microarray designs. This collection references design protocols."^^ . -_:Nb7cba4c2ffc54d749f40667db69bc6d1 "Pat Brooks" . - . - "ecmdb" . - . - "epcc" . - "clinvar.variation" . - . - "violinId" . - "An identifier for a country in numeric format per ISO 3166-1"^^ . - . - "Vital Sign Ontology" . - "agricultural engineering" . - . - . - . - "Re3data is a global registry of research data repositories that covers research data repositories from different academic disciplines." . - . - . - . - . - "HsapDv" . - . + . + . + . + "mathematics" . + . + . + "medicinal chemistry" . + . + . + "bgee.stage" . + . + "eccode" . + . + "ramirez@macn.gov.ar" . + . + "DG00301"^^ . + "Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases, which you can browse or search. It is a collection of publicly available pathways from multiple organisms that provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language."^^ . + "uniprot.isoform" . + . +_:N65fbd436827845f5847a7d3a01a8aa66 "FALDO group" . + . + . + "NLXCHEM" . + . + . + . + . + "NIA Mouse cDNA Project" . + . + . + "biocatalogue.service" . + . + . + . + . + . + . + . + . + . + "genome" . + "Database of Quantitative Cellular Signaling: Model" . + . + . + . + "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$"^^ . + "12e8LH"^^ . + . + . + . + . + "https://hdl.handle.net/hdl:20.500.12633/$1"^^ . + "ontology" . + . + "Human Pluripotent Stem Cell Registry" . + . + . + . + . + . + "https://w3id.org/BCI-ontology#$1"^^ . + . + "https://gpcrdb.org/protein/"^^ . + . + "false"^^ . + . + "obo" . + . + "http://www.humanproteomemap.org/spectrum.php?pep_id="^^ . + . + . + "broad" . + . + . + . + . + . + "https://europepmc.org/article/ppr/"^^ . + . + . + . + . + "ontology" . + "^\\w{14}$"^^ . + "drugs" . + . + . + . + . + . + "eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of orthologous groups of genes. The orthologous groups are annotated with functional description lines (derived by identifying a common denominator for the genes based on their various annotations), with functional categories (i.e derived from the original COG/KOG categories)."^^ . + . + "anatomy" . + "Ligand Expo is a data resource for finding information about small molecules bound to proteins and nucleic acids."^^ . + . + . + "metagenomics" . + . + . + . + "kdurante@stanford.edu" . + "snp500cancer" . + "ohmi" . + . + "http://terminology.hl7.org/CodeSystem/v2-$1"^^ . + "This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase."^^ . + . + . + . + "^E\\d+$"^^ . + "microbiology" . + "P23298"^^ . + . + "2029"^^ . + . + . + "structure" . + . + "unichem" . + . + . + . + "HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes."^^ . + "true"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "GenDR is a database of genes associated with dietary restriction (DR). GenDR includes two datasets: 1) genes inferred from experiments in model organisms in which genetic manipulations cancel out or disrupt the life-extending effects of DR; 2) genes robustly altered due to DR, derived from a meta-analysis of microarray DR studies in mammals"^^ . + . + "0001"^^ . + . + . + "CTX" . + . + . + "pathway" . + . + . "SNOMEDCT_US_2019_09_01" . - . - "^\\d{7}$"^^ . - . - . - . - "dideo" . - "a.39.1.1"^^ . - . - . - "false"^^ . - "hhe@ebi.ac.uk" . - . - . - . - . - "biomedical science" . - . - . - "hgnc" . - "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$"^^ . - "Matúš Kalaš" . - . - . - . - . - . - . - . - . - . - "dce" . - "msio" . - . - "rrid" . - . - "cd00400"^^ . - "46946"^^ . - "VFDB Genus" . - "https://mor.nlm.nih.gov/RxNav/search?searchBy=RXCUI&searchTerm=$1"^^ . - "apid.interactions" . - . - "rfam" . - "Liver Cancer Model Repository" . - "life science" . - . - "TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . - "oae" . - . - . - "http://purl.obolibrary.org/obo/EO_"^^ . - "drsanv0" . - . - . - . - "An ontology to represent genomics cohort attributes."^^ . - . - . - "ontology" . - . - "https://repeatsdb.org/protein/$1"^^ . - . - "SP_SL" . - . - "ontology" . - . - . - . - . - . - "Collection of European paediatric cardiac coding files"^^ . - "fhir.implementation" . - . + "A structured controlled vocabulary for the phenotypes of Ascomycete fungi."^^ . + "false"^^ . + "Database of structurally defined protein interfaces" . + . + "Simplified molecular-input line-entry system" . + . + "https://portal.issn.org/resource/ISSN/"^^ . + "http://www.ncbi.nlm.nih.gov/clinvar/"^^ . + . + "trans" . + "0000319"^^ . + . + . + . + "mgnify.analysis" . + . + "http://purl.org/obo/owlEOL_$1"^^ . + . + "botany" . + "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=$1"^^ . + "life science" . + . + . + . + . + . + . + "David Brodbelt" . + "Wormpep contains the predicted proteins from the Caenorhabditis elegans genome sequencing project."^^ . + . + "pocketome" . + . + . + . + . + . + . + "Population and Community Ontology" . + "http://pombe.oridb.org/details.php?id=$1"^^ . + . + "http://www.proteinmodelportal.org/query/uniprot/$1"^^ . + "8"^^ . + "cpt" . + "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId="^^ . + . + "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#$1"^^ . + "gene" . + "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=$1"^^ . + . + "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id=$1"^^ . + "The Pseudomonas Genome Database is a resource for peer-reviewed, continually updated annotation for all Pseudomonas species. It includes gene and protein sequence information, as well as regulation and predicted function and annotation."^^ . + "OArCS is an ontology describing the Arthropod ciruclatory system."^^ . + "http://purl.obolibrary.org/obo/FAO_$1"^^ . + . + "BRENDA Ligand Group" . + . + . + . + . + . + . + . + . + . + . + "Hölzel is a life science reagent vendor based in Cologne, Germany. As a distributor, they offer products suitable for many kinds of research areas such as oncology, neuroscience, immunology, and more. Their portfolio consists of antibodies, recombinant proteins, inhibitors, ELISA-kits as well as other assays, arrays and kits. Their inhibitor portfolio can be easily accessed via the CAS-register catalog."^^ . + "http://bioinformatics.hsanmartino.it/hypercldb/$1.html"^^ . + "gene" . + "neurobiology" . + . + . + . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + . + "WGS84 Geo Positioning" . + . + . + "Catalogue of Life" . + "hsa-let-7a"^^ . + . + . + . + . + "117"^^ . + . + . + . + . + . + "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:"^^ . + . + . + . + "https://s3.us-east-2.amazonaws.com/lg.cede/$1"^^ . + "NIF Standard Ontology: External" . + "The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets. The 4D Nucleome Network aims to understand the principles underlying nuclear organization in space and time, the role nuclear organization plays in gene expression and cellular function, and how changes in nuclear organization affect normal development as well as various diseases."^^ . + . + "6819"^^ . + "plasmid" . + . + "hsdb" . + "Anne Thessen" . + . + . + "phosphosite.protein" . + "^\\w+$"^^ . + "http://www.innatedb.ca/getGeneCard.do?id="^^ . + . + . + "^HGVM\\d+$"^^ . + . + . + . + . + "Pathguide contains information about 325 biological related resources and molecular interaction related resources."^^ . + "322"^^ . + . + . + "The pattern for expanded URIs in the given resource" . + . + "sciflection" . + "https://www.ebi.ac.uk/complexportal/complex/"^^ . + . + "CATH domain" . + "^\\d+$"^^ . + . + . + "Andreas Ledl" . + . + "biology" . "igsn" . - . - "provenance"^^ . - . - "Proteomics data and process provenance" . - . - . - . - . - "david.gloriam@sund.ku.dk" . - "genomics" . - . - "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/"^^ . - . - "0000049"^^ . - "Li-San Wang" . - . - . - . - . - "ontology" . - . - . - . - . - "AnVIL DRS" . - . - "http://www.ymdb.ca/compounds/$1"^^ . - "MAMpol005339"^^ . - "fbcv" . - "BRENDA Enzyme" . -_:N2ccf485d4a424189ba97a59849c5d815 "mssohelp@meddra.org" . - . - . - "ken.sd.hsu@gmail.com" . - "false"^^ . - . - . - . - . - . - . - . - "obo" . - "SysBioCancer2022"^^ . - . - "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?"^^ . - . - . - "http://purl.obolibrary.org/obo/FLU_"^^ . - "http://www.w3.org/2002/07/owl#"^^ . - . - "Prefixes mentioned on the _external_ list on the FHIR [Code Systems](https://hl7.org/fhir/terminologies-systems.html) page. This list is mostly complete. Notably, some entries that have not been curated:\n\n- HGVS (see discussion at [#460](https://github.com/biopragmatics/bioregistry/issues/460))\n- [NUBC](http://www.nubc.org) (National Uniform Billing Committee) - could not find information about the terminology or its entries\n- [ICPC](http://www.ph3c.org/) (International Classification of Primary Care) _same_\n- [GTIN](https://www.gs1.org/standards/id-keys/gtin) (Global Trade Item Number) _same_\n- [MDC](https://www.iso.org/standard/37890.html) (Medical Device Codes) since that appears to be part of a larger ISO standard vocabulary that needs further investigation" . - "^\\d+$"^^ . - . - . - . - "data analysis service" . - . - "SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc."^^ . - . - "false"^^ . - . - . - . - "gramene.taxonomy" . - . - "chiro" . - . - "kinetics" . - "AP00378"^^ . - . + _:N2a6598dcac82449284e147289aeb0d56 . + . + . + . + . + . + "UniProt Protein" . + "Hilmar Lapp" . + . + . + "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT)."^^ . + . + "obo" . + . + . + . + . + . + "http://purl.uniprot.org/isoforms/$1"^^ . + . + "maxo" . + "^\\d+$"^^ . + "genotyping" . + . + . + "^\\d+$"^^ . + . + . + "https://doi.org/$1"^^ . + . + "false"^^ . + "true"^^ . + . + . + "^\\d+$"^^ . + . + . + . + "The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity research."^^ . + . + . + . + . + . + . + . + "nlx.oen" . + . + "false"^^ . + . + "^\\d+$"^^ . + . + "biomedical" . + . + . + "International Classifications of Diseases" . + . + "HMS Library of Integrated Network-based Cellular Signatures Antibodies" . + . + . + . + "http://en.wikipedia.org/wiki/"^^ . + . + . + . + . + "life science" . + . + . + . + . + . + . + . + . + . + . + . + "https://www.deciphergenomics.org/syndrome/"^^ . + . + . + . + . + . + . + . + "Ontology of Physics for Biology" . + . + "Ardan Patwardhan" . + "https://www.ncbi.nlm.nih.gov/cdd?term=$1"^^ . + . + "false"^^ . + . + "Ontology of rat strains"^^ . + . + . + "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:$1"^^ . + "npass" . + . + "abcam" . + . + . + . + . + . + . + . + "^[EL]D[SG]-\\d+$"^^ . + . + "http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=$1"^^ . + . + . + "bioinformatics" . + . + . + . + "small molecule" . + . + "GrassBase provides an interactive guide to nomenclature for the whole grass family. It provides lists of over 60,000 names for any given genus, geographical region or genus within a geographical region, helps find the accepted name, synonyms and distribution for any given name, and gives a desription for each species."^^ . + "^PED\\d{5}e\\d{3}$"^^ . + . + . + . + "Will Simpson" . + "false"^^ . + . + . + . + "mass spectrometry" . + . + "computational biology" . + . + . + "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology"^^ . + "Identifiers.org is an established resolving system that enables the referencing of data for the scientific community, with a current focus on the Life Sciences domain."^^ . + . + . + . + . + . + . + . + . + . + "false"^^ . + . + "false"^^ . + "structrual bioinformatics" . + "icd11" . + "false"^^ . + . + "A vocabulary for annotating vocabulary descriptions" . + . + . + . + . + "ontology" . + . + . + "genedb" . + . + . + . + . + . + . + . + "DataONE" . + . + "0778"^^ . + "http://www.ebi.ac.uk/astd/geneview.html?acc="^^ . + . + "hovergen" . + . + "sty" . + "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/$1"^^ . + "Lindsey N. Anderson" . + "Satya S. Sahoo" . + "Citlalli Mejía-Almonte" . + "^\\d{7}$"^^ . + "CCDC Number" . + . + . + . + "small molecule" . + . + "dan5@georgetown.edu" . + . + "https://cropontology.org/rdf/CO_346:$1"^^ . + . + "https://pathbank.org/view/$1"^^ . + . + . + . + "life science" . + "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId=$1"^^ . + . + "GLIDA GPCR" . + "1731"^^ . + . + "structure" . + . + "false"^^ . + . + . + . + . + . + . + . + "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts."^^ . + . + "gear" . + . + . + . + . + . + . + . + . + . + "https://www.re3data.org/repository/$1"^^ . + . . - . - . - "TAX" . - . - "botany" . - . - . - . - . - . - . + . + "ucsc" . + "sbo" . + . + "^NOR\\d+$"^^ . + "mirte" . + "obo" . + . + . + . + . + . + "Gene Expression Ontology"^^ . + . + "https://lincs.hms.harvard.edu/db/proteins/$1"^^ . + . + . + . + "http://www.mycobank.org/Biolomics.aspx?Table=Mycobank&MycoBankNr_=$1"^^ . + . + . + "data analysis service" . + "true"^^ . + "gnpis" . + . . - . - . - "Homeostasis imbalance process ontology" . - . - . - "http://purl.obolibrary.org/obo/FLOPO_$1"^^ . - . - . - . - . - . - . - "ontology" . - . - . - . - . - "http://purl.obolibrary.org/obo/NCIT_$1"^^ . - . - . - "NIF Standard Ontology: Cognitive Function" . - "174"^^ . - . - "pancreas" . - . - . - "ontology" . - . - "cadsr" . - . - "David Sehnal" . - "environmental science" . - . - "obo" . - . - "mammalian" . - "true"^^ . - . - "2c6s"^^ . - . - "rmrich5@gmail.com" . - "Research Resource Identifiers" . - "biomedical science" . - . - . - "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=$1"^^ . - . - . - . - . - . - . - . - . - . - "http://www.radiomics.org/RO/$1"^^ . - "biomedical science" . - "Ontology about the development and life stages of the C. elegans"^^ . - . - "false"^^ . - . - . - . - . - "http://www.vbase2.org/vgene.php?id=$1"^^ . - . - _:Nb25d6d0b2d8c4f4791e8dc90a749eff0 . - "pdb" . - "life science" . - . - "^[0-9]+$"^^ . - "glycomics" . - "co_333" . - . - "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id="^^ . - . - . - . - . - . - . - "1044544"^^ . - . - "Histopathology Ontology" . - "0000072"^^ . - . - . - . - "101"^^ . - "http://purl.bioontology.org/ontology/HOIP/HOIP_$1"^^ . - "^\\d+$"^^ . - "false"^^ . - "^\\d{7}$"^^ . - "life science" . - . - . - "0000123"^^ . - . - . - "mirbase.family" . - . + . + "clustering" . + . + . + . + . + "FlyBase Qualifiers" . + . + . + . + "Ensembl Plants" . + "disorders" . + . + . + . + . . - "false"^^ . - . - . - . - "ontology" . - . - . - . - . - . - . - . - . - "^\\d{7}$"^^ . - "https://cropontology.org/rdf/CO_325:$1"^^ . - . - . - "virology" . - "oboinowl" . - "life science" . - . - "0000001"^^ . - "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=$1"^^ . - "12"^^ . - . - "civic.aid" . - "MEROPS Family" . - "false"^^ . - "1a24"^^ . - . - . - "^[0-9]+$"^^ . - "obo" . - . - "Lentil Trait Dictionary in template v5 - ICARDA - July 2015"^^ . - "ontology" . - "ncbi.assembly" . - . - . - . - "false"^^ . - "https://smid-db.org/smid/$1"^^ . - . - . - "structure" . - . - . - . - . - . - . - . - . - . - . - . - . - "genomics" . - . - . - . - . -_:N0c4133fa3abd40e2babb1af40e7ea11a "helpdesk@cropontology-curationtool.org" . - . - "research" . - "obo" . - . - . - . - . - . - "GnpIS is an integrative information system focused on plants and fungal pests. It provides both genetic (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest."^^ . - . - "beta-carotene"^^ . - . - "false"^^ . - . - "ontology" . - . - "^\\d{7}$"^^ . - . - . - . - . - . - "obo" . - "a.kikhney@embl-hamburg.de" . - "genetics" . - . - "0004"^^ . - "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID="^^ . - . - . - . - "structure" . - . - . - . - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=$1"^^ . - . - . - "anatomy" . - . - "NIF Standard Ontology: Investigations" . - . - . - . - "genome" . - . - "PaxDb Organism" . - . - . - "125768"^^ . - "CHEMBL4303805"^^ . - . - . - . - . - . - "ontology" . - . - . - . - . - . - . - . - . - . - "https://bioregistry.io/pesticides:"^^ . - . - "http://purl.obolibrary.org/obo/UBERON_"^^ . - . - "1a05"^^ . - "inbred" . - "http://purl.bioontology.org/ontology/NDDF/"^^ . - "BioLegend is a life sciences supply vendor."^^ . - . - "rna" . - . - . - . - . - . - "biology" . - . - . - . - "Interlinking Ontology for Biological Concepts" . - . - . - "^\\d{7}$"^^ . - . - . - . - "ttd.drug" . - . - . - . - . - . - . - . - "BCRTi001-A"^^ . - "http://purl.obolibrary.org/obo/REX_$1"^^ . - . + . + . + "go.rule" . + "meetings" . + . + . + . + . + . + "co_347" . + "http://purl.obolibrary.org/obo/ENVO_$1"^^ . + "GPM32310002988"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/STATO_$1"^^ . + . + . + . + . + . + "genome" . + . + . + "^[0-9]+$"^^ . + "Pierre-Marie Allard" . + "^\\d{3}-\\d{3}-\\d$"^^ . + . + . + . + . + . + "steven.marsh@ucl.ac.uk" . + "https://www.cameo3d.org/sp/targets/target/$1"^^ . + . + . + . + . + . + . + . + "metanetx.chemical" . + . + . + . + . + . + . + . +_:N696d9d4e08614292af9559f78985c799 "Crop Ontology Helpdesk" . + . + . + . + "^C?\\d+$"^^ . + . + . + "4005"^^ . + . + "^[A-Za-z]+$"^^ . + "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=$1"^^ . + . + . + . + . + . + "false"^^ . + "00000101"^^ . + "NCit" . + . + . + . + "false"^^ . + "http://purl.obolibrary.org/obo/kestrelo_$1"^^ . + . + . + "false"^^ . + . + "A formal ontology of phenotypes observed in fission yeast."^^ . + "ArachnoServer" . + "http://purl.obolibrary.org/obo/SBO_"^^ . + "statistics" . + . + . + . + . + . + "obo" . + . + "obo" . + . + "po" . + "life science" . + . + . + . + . + . + "bioschema" . + "agriculture" . + . + . + . + . + . + . + . + . + . . - . - . - "bioinformatics" . - "identifier for a chemical compound per EINECS or ELINCS"^^ . - "https://glyconavi.org/hub/?id="^^ . - . - . - "ChemSpider" . - . - . - "http://purl.obolibrary.org/obo/TAHE_$1"^^ . - . - . - . - . - . - . - "4007166"^^ . + . + "sheriff@ebi.ac.uk" . + . + "Montana Smith" . + . + . + . + . + "Wikidata is a free and open knowledge base that can be read and edited by both humans and machines.\nWikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wiktionary, Wikisource, and others. "^^ . + . + "RNA STRAND contains known RNA secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known RNA secondary structures, and to provide the scientific community with simple yet powerful ways of analysing, searching and updating the proposed database."^^ . + . + "physical geography" . + . + . + "https://www.biocatalogue.org/services/"^^ . + . + . + "^GenProp\\d+$"^^ . + . + . + . + "genome" . + . + . + . + . + "DBG2 Introns" . + . + "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$"^^ . + . + "ontology" . + . + "4dn.replicate" . + . + . + . + . + . + . + . + . + . + "genome" . + . + . + . + "pathogen" . + . + . + "chromosome" . + "biomodels.db" . + . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nlx_res_$1"^^ . + . + "3517823"^^ . + . + "pathway" . + . + . + "ontology" . + . + . + "data mining" . + . + . + "OpenAlex is a fully open catalog of the global research system that describes scholarly entities and how those entities are connected to each other."^^ . + _:N26c0c05c822d47a285ae363ae8b52b83 . + . + . + "false"^^ . + "^\\d+$"^^ . + . + "GeneNote is a database of human genes and their expression profiles in healthy tissues. It is based on Weizmann Institute of Science DNA array experiments, which were performed on the Affymetrix HG-U95 set A-E."^^ . + "M94112"^^ . + . + "inn" . + . + "jaxmice" . + . + . + . + . + . + "icdc" . + . + "evolutionary biology" . + . + . + "UM-BBD_compID" . + "hso" . + "transposon" . + "SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. It is part of the Open Biomedical Ontologies library."^^ . + . + . + . + "http://dictybase.org/gene/"^^ . + "true"^^ . + "gomf" . + . + . + "iNaturalist Taxonomy" . + . + . + . + . + . + "apo" . + . + "Genitourinary Development Molecular Anatomy Project" . + . + . + . + . + . + "false"^^ . + . + . + "tgn" . + "ChEMBL-Targets" . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/OMRSE_$1"^^ . + "Pierre-Yves LeBail" . + . + . + . + "221058"^^ . + "The Virus Infectious Disease Ontology" . + "mosaic" . + "false"^^ . + "chemistry" . + . + . + "subject agnostic" . + . + . + "false"^^ . + . + "wwpdb" . + . + . + "subject agnostic" . + . + . + . + "pdbj" . + . + . + "ontology" . + "https://www.yeastgenome.org/locus/$1"^^ . + . + . + "Variable"^^ . + "OVAE is a biomedical ontology in the area of vaccine adverse events. OVAE is an extension of the community-based Ontology of Adverse Events (OAE)."^^ . + . "Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis." . - . - . - . - . - . - . - . - . - "false"^^ . - "http://genome.crg.es/datasets/abs2005/entries/$1.html"^^ . - "An identifier for institutions in the United Kingdom, used in GRID and ROR."^^ . - . - "^\\d{7}$"^^ . - . - "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"^^ . -_:Nfb9e4277d5bc487682344f95beae248e "albertgoldfain@gmail.com" . - "Stian Soiland-Reyes" . - . - . - . - . - . - . - "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions."^^ . - . - . - . - . - . - . - . - . - . - "false"^^ . - . - "http://www.w3.org/1999/02/22-rdf-syntax-ns#$1"^^ . - . - . - . - . - "false"^^ . - "DRKS00031815"^^ . - "^AA\\d{4}$"^^ . - . - . - . - . - . - . - . - . - "ontology and terminology" . - "systems biology" . - . - . - . - . - . - . - . - . - . - "https://www.storedb.org/store_v3/download.jsp?fileId=$1"^^ . - . - . - "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes."^^ . - . - . - . - . - . - "http://www.theworldavatar.com/ontology/ontokin/OntoKin.owl#"^^ . - . - "obo" . - "orphanet" . - . - . - . - . - . - "anne.morgat@sib.swiss" . - . - "false"^^ . - . - . - . - . - "http://www.pathoplant.de/detail.php?accNo="^^ . - . - . - "PubChem CID" . + . + . + "false"^^ . + . + "computer science" . + . + "false"^^ . + "MO000027"^^ . + . + . + . + . + "false"^^ . + . + . + "https://registry.bio2kg.org/resource/$1" . + . + . + . + . + . + "false"^^ . + . + "PeptideAtlas Dataset" . + . + . + "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$"^^ . + "The COVID-19 Vocabulary (COVoc) is an ontology containing terms related to the research of the COVID-19 pandemic. This includes host organisms, pathogenicity, gene and gene products, barrier gestures, treatments and more."^^ . + . + . + "Molecular Interaction Database" . + "DSMZCellDive" . + "true"^^ . + . + "storedb.file" . + . + "obo" . + "false"^^ . + "molecular dynamics" . + . + "http://www.iclc.it/details/det_list.php?line_id="^^ . + . + . + . + "The European Registry of Materials is a simple registry with the sole purpose to mint material identifiers to be used by research projects throughout the life cycle of their project."^^ . + "http://purl.obolibrary.org/obo/CHIRO_"^^ . + . + . + . + . + "MarFun is manually curated database for marine fungi which is a part of the MAR databases."^^ . + . + "false"^^ . + "biomodels.kisao" . + . + . + "Spectral Database for Organic Compounds" . + . + "12300"^^ . + "false"^^ . + . + . + . + . + . + . + . + . + . + "Brachiaria (forages) ontology TD v5 - Version Oct 2016"^^ . + "false"^^ . + "regulation" . + "gene" . + "KIAA0001"^^ . + . + "http://avis.princeton.edu/pixie/viewgraph.php?graphID="^^ . + . + "strain" . + "^\\d+$"^^ . + . + "https://www.vmh.life/#metabolite/"^^ . + . + . + "strain" . + . + . + "obo" . + . + . + . + "https://www.disprot.org/"^^ . + . + "anatomy" . + . + . + . + "AA0001"^^ . + "^[A-Z_0-9]+$"^^ . + . + "https://cordis.europa.eu/project/id/"^^ . + . + . + "sequence" . + "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/"^^ . + "ISO 3166-1 Country Code" . + . + . + . + "biomedical science" . + . + . + . + "PomBase" . + . + "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=$1"^^ . + . + "http://purl.obolibrary.org/obo/SYMP_$1"^^ . + "^\\d+$"^^ . + . + "http://exac.broadinstitute.org/gene/$1"^^ . + "https://www.pharmvar.org/gene/$1"^^ . "AB_262044"^^ . - . - "The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. This collections references inhibitors."^^ . - "http://purl.obolibrary.org/obo/ONTONEO_$1"^^ . - . - "^\\d{7}$"^^ . - "oa" . - "pathbank" . - "https://mmp.sfb.uit.no/databases/marfun/#/records/$1"^^ . - . - . - "Grape Ontology including OIV and bioversity descriptors. INRA July 2017"^^ . - . - . - "^(R)?PXD\\d{6}$"^^ . - . - . - . - "SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm articulates different ontologies that represent complementary sub-domains of pharmacogenomics, i.e. related to genotype, phenotype, drugs, and clinical trials. SO-Pharm enables to represent pharmacogenomic relationships between a drug, a genomic variation and a phenotype trait. In addition, it enables to represent patient and more largely panel included in trials, and populations. SO-Pharm enables the representation of measured items on this patients such as results from the observation of a phenotype trait or of genomic variations. SO-Pharm supports knowledge about pharmacogenomic hypothesis, case study, and investigations in pharmacogenomics. SO-Pharm is designed to facilitate data integration and knowledge discovery in pharmacogenomics. In addition it provides a consistent articulation of ontologies of pharmacogenomic sub-domains."^^ . - . - . - . - " KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."^^ . - . - . - "identifier for an organisation in author affiliations per Scopus"^^ . - . - "http://purl.obolibrary.org/obo/PORO_$1"^^ . - "k-12 teacher" . - . - . - . - "0459895"^^ . - . - "http://purl.obolibrary.org/obo/MOP_"^^ . - . - "European Food Information Resource Network" . - "torsten.schwede@unibas.ch" . - . - "hms.lincs.antibody" . - "ddinter.drug" . - . - "https://bioregistry.io/proteomicsdb.protein:"^^ . - . - . - "BSU29180"^^ . - "protein" . - . - "NCBI_Taxon_ID" . - . - . - "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=$1"^^ . - . - . - . - "RSC3"^^ . - . - . - . - "yongqunh@med.umich.edu" . - "https://scicrunch.org/scicrunch/interlex/view/ilx_$1"^^ . - . - "Metabolite and Tandem Mass Spectrometry Database" . - "Japan Chemical Substance Dictionary" . - "221058"^^ . - . - "Agricultural Online Access" . - "ontology" . - "NONHSAT000001"^^ . - . - . - . - "informatics" . - "^\\w+$"^^ . - "Ontology for Immune Epitopes" . - "Cell line collections (Providers)"^^ . - . - . - . - "PomBase is a model organism database established to provide access to molecular data and biological information for the fission yeast Schizosaccharomyces pombe. It encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets."^^ . - "David Gloriam" . - "zebrafish" . - . - . - . - . - . - "https://www.disprot.org/$1"^^ . - . - . - . - "^PED\\d{5}$"^^ . - . - . - . - . - . - "ontology" . - "AGROVOC" . - . - . - . - "http://www.probonto.org/ontology#PROB_"^^ . - . - "^\\d+$"^^ . - "80001"^^ . - "Drug-drug Interaction and Drug-drug Interaction Evidence Ontology" . - . - "geography" . - . - "Golm Metabolome Database Profile" . - "medicine" . - . - . - . - "biomedical science" . - . - . - . - . - . - "International repository of Adverse Outcome Pathways."^^ . - "http://purl.uniprot.org/isoforms/$1"^^ . - . - . - "structure" . - . - "0000125"^^ . - "false"^^ . - . - "mcro" . - . - . - "life science" . - "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them."^^ . - . - "https://www.grid.ac/institutes/$1"^^ . - "scopus.eid" . - . - . - . - . - . - . - . - . - . - "^\\w+$"^^ . - . - . - . - . - . - "gendis" . - "ontology" . - . - "17:41223048"^^ . - "obo" . - . - . - "DragonDB Locus" . - . - . - . - . - "epigenetics" . - . - . - "epidemiology" . - . - "structure" . - "false"^^ . - . - . - . - . - . - "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism."^^ . - . - . - "http://stitch.embl.de/interactions/$1"^^ . - . - "https://www.affymetrix.com/LinkServlet?probeset="^^ . - "false"^^ . - . - "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid="^^ . - . - . - . - "false"^^ . - . - . + . + "genome" . + . + "https://www.biolegend.com/Default.aspx?ID=6664&productid=$1"^^ . + . + . + . + . + . + "noncodev4.rna" . +_:N28837f905bbe4f449cd65892310641e6 "bioportal" . + . + . + "false"^^ . + "model organism" . + . + . + "false"^^ . + . + . + . + . + . + "https://hdl.handle.net/hdl:20.500.12582/"^^ . + . + "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#"^^ . + . + "false"^^ . + . + "https://www.uniprot.org/database/" . + "http://biocyc.org/getid?id="^^ . + . + "narcis" . + "The purpose of the UniProtKB/Swiss-Prot variant pages is: to display the variant related information extracted from UniProtKB/Swiss-Prot, and to provide useful additional information such as the conservation of the modified residues across orthologous species."^^ . + . + "^GLDS-\\d+$"^^ . + . + . + "false"^^ . + . + . + "false"^^ . + . + "SP_KW" . + . + . + "false"^^ . + "AgentIdentifierScheme"^^ . + . + . + "alteration" . + "http://bigg.ucsd.edu/models/universal/reactions/"^^ . + . + . + "Compositional Dietary Nutrition Ontology" . + "http://purl.org/dc/dcmitype/"^^ . + "gene expression" . + "life science" . + . + . + . + . + "ovarian" . + . + . + . + . + "The Bibliographic Ontology Specification provides main concepts and properties for describing citations and bibliographic references (i.e. quotes, books, articles, etc) on the Semantic Web."^^ . + "YAL001C"^^ . + . + "bigg.metabolite" . + . + . + . + "false"^^ . + . + . + "http://viaf.org/viaf/$1"^^ . + . + "protein" . + "fma" . + "false"^^ . + . + . + . + . + . + . + "genome" . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/NIF_CELL_"^^ . + "IPD-IMGT/HLA" . + "Sabine.Oesterle@sib.swiss" . + . + . + . + . + . + . + . + . + . + . + . + . + "ontology" . + . + . + . + . + . + . + . + "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM="^^ . + "false"^^ . + . + . + . + "macie" . + . + "false"^^ . + . + "protein" . + . + . + . + "Benjamin M. Gyori" . + . + . + . + . + . + . + . + . + . + . + . + . + "genome" . + "^jRCT\\w?\\d+$"^^ . + . + . + . + . + "pathways" . + "ndf-rt" . + "grid" . + "PSI-MOD" . + . + . + . + . + . + . + "omp" . + . + . + . + "^\\d+$"^^ . + . + . + . + . + "https://www.ebi.ac.uk/biomodels/$1"^^ . + . + . + "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$"^^ . + "Functional Requirements for Bibliographic Records" . + . + "http://purl.obolibrary.org/obo/FBbi_$1"^^ . + "Vertebrate Homologous Organ Group Ontology" . + . + "European Collection of Authenticated Cell Culture" . + . + . + . + "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/"^^ . + "obo" . + . + . + . + . + . + . + . + "http://www.gramene.org/db/protein/protein_search?protein_id=$1"^^ . + . + . + . + "http://purl.obolibrary.org/obo/LABO_$1"^^ . + . + . + . + . + "genetics" . + . + "venom" . + . . - . - "NAD%20biosynthesis"^^ . - "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam="^^ . - "protein" . - . - "^\\d{4}$"^^ . - . - . - "preclinical studies" . - . - "false"^^ . - . - . - . - . - "gene" . - "Swiss National Clinical Trials Portal" . - . - "genomics" . - "https://www.ncbi.nlm.nih.gov/research/cog/cog/"^^ . - . - "https://www.alzforum.org/mutations/$1"^^ . - "75"^^ . - "Ctibor Škuta" . - . - . - . - "ontology" . - . - . - . - . - "https://jrct.niph.go.jp/en-latest-detail/$1"^^ . - "^([a-zA-Z]+-)?\\d+(\\.\\d)?$"^^ . - "Gene Wiki" . - "0000000"^^ . - . - "false"^^ . - "false"^^ . - . - . - . - "SABIO-RK Reaction" . - "life science" . - . - . - "Tohoku University cell line catalog" . - "11303"^^ . - "metabolites" . - "Schema.org" . - . - . - . - "structural biology" . - . - . - . - . - . - "false"^^ . - . - . + . + . + . + "A representation of the variety of methods used to make clinical and phenotype measurements."^^ . + "aa78a43f-9c4d-11eb-9e72-0ac135e8bacf"^^ . + . + "PIBASE is a collection of all protein structural interfaces extracted from the Protein Data Bank and PQS structure databases. Both chain-chain and domain-domain (SCOP and CATH definitions) interfaces are detected."^^ . + "ontology" . + . + . + . + "comparative genomics" . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + "OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes across vertebrates, arthropods, and fungi. Orthology refers to the last common ancestor of the species under consideration, and thus OrthoDB explicitly delineates orthologs at each radiation along the species phylogeny. The database of orthologs presents available protein descriptors, together with Gene Ontology and InterPro attributes, which serve to provide general descriptive annotations of the orthologous groups"^^ . + "00020007"^^ . + "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=$1"^^ . + . + "sequence" . + . + . + . + "http://sideeffects.embl.de/se/"^^ . + "exac.variant" . + . + . + . + "These are the terms that are improted for FOVT to describe vertebrate traits."^^ . + "drug discovery" . + "biomaterial" . + "CHEBI" . + . + . + "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers."^^ . + "false"^^ . + . + . + . + . + . + . + . + . + . + "https://www.vmh.life/#metabolite/$1"^^ . + . + . + "https://cropontology.org/term/$1:$2" . + "https://cropontology.org/rdf/CO_331:$1"^^ . + "https://www.drugbank.ca/categories/"^^ . + "https://www.ncbi.nlm.nih.gov/snp/$1"^^ . + "The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequences, including extensive gene bibliographies. A major EcoGene focus has been the re-evaluation of translation start sites."^^ . + . + . + . + . + "false"^^ . + . + "false"^^ . + . + "ttd.drug" . + "http://purl.obolibrary.org/obo/TXPO_$1"^^ . + . + . + . + "rgd.strain" . + . + . + . + . + "http://edamontology.org/data_$1"^^ . + . + . + . + . + "sao" . + . + . + . + . + . + "Protein Model Portal" . + . + . + . + . + "false"^^ . + . + . + "http://purl.obolibrary.org/obo/WBPhenotype_$1"^^ . + . + "2200950"^^ . + . + . + . + _:N1bbada1527ec4d42b30fec1f0ff0bdb1 . + . + . + . + "genomics" . + . + . + . + "The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery."^^ . + "Metabolome Express" . + "ontology" . + "FBbi" . + . + "arrayMap is a collection of pre-processed oncogenomic array data sets and CNA (somatic copy number aberrations) profiles. CNA are a type of mutation commonly found in cancer genomes. arrayMap data is assembled from public repositories and supplemented with additional sources, using custom curation pipelines. This information has been mapped to multiple editions of the reference human genome."^^ . + . + . + . + "maxneal@gmail.com" . + . + . + "ontology" . + . + "Eukaryotic Genes" . + "computer science" . + . + . + "nucleardb" . + . + . + . + "https://biopragmatics.github.io/providers/icepo/"^^ . + "https://www.facebase.org/data/record/#1/isa:dataset/accession=$1"^^ . + "http://purl.obolibrary.org/obo/PLANP_$1"^^ . + . + . + "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name="^^ . + . + "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide."^^ . + "Q-2958"^^ . + "bridgedb" . + . + . + . + . + . + "RNA ontology" . + "pmr.workspace" . + "Geographical Entity Ontology" . + . + . + . + "http://purl.obolibrary.org/obo/APOLLO_SV_"^^ . + . + . + "https://www.thermofisher.com/antibody/product/"^^ . + "Kids First" . + "obo" . + . + . + "micro" . + . + . + . + . + . + . + "rs121909098"^^ . + . . -_:N93983d18fcdf409b8daffd2813858a1c "helpdesk@cropontology-curationtool.org" . - . - . - "Hypertension Ontology" . - . - "https://portal.gdc.cancer.gov/cases/"^^ . + . + . + "protein complexes" . + . + "false"^^ . + . + "DragonDB Locus" . + . + . + "http://purl.obolibrary.org/obo/AMPHX_$1"^^ . + . + "ontology" . + . + . + . + . + "false"^^ . + "https://www.dsmz.de/collection/catalogue/details/culture/"^^ . + . + "http://purl.org/dc/elements/1.1/$1"^^ . + . + . + "repeatsdb.protein" . + "1199"^^ . + . + "Sharkipedia is an open source research initiative to make all published biological traits and population trends on sharks, rays, and chimaeras accessible to everyone."^^ . + . + "mbrochhausen@gmail.com" . + . + . + "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=$1"^^ . + . + . + . + . + . + "^\\S+$"^^ . + . + "Cell Image Library" . + "BRENDA Ligand" . + . + . + "Peruvian Clinical Trial Registry" . + "ontology" . + "true"^^ . + . + . + . + "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_$1"^^ . + . + . + "Austrian Library Network" . + . + . + . + . + . + . + . + . + "https://www.kaggle.com/"^^ . + "false"^^ . + "The MHC Restriction Ontology is an application ontology capturing how Major Histocompatibility Complex (MHC) restriction is defined in experiments, spanning exact protein complexes, individual protein chains, serotypes, haplotypes and mutant molecules, as well as evidence for MHC restrictions."^^ . + . + "https://www.cellosaurus.org/CVCL_$1"^^ . + "Bacillus subtilis genome sequencing project" . + . + "Ligandbook is a public repository for force field parameters with a special emphasis on small molecules and known ligands of proteins. It acts as a warehouse for parameter files that are supplied by the community."^^ . + "gemet" . + "proteomics" . + . + "false"^^ . + . + . + . + "functional genomics" . + . + . + . + . + . + "canal"^^ . + "co_326" . + . + . + . + . + . + "bactibase" . + "true"^^ . + . + . + . + . + . + . + "cell lines" . + . + "life science" . + . + "pharmacogenomics" . + "Veterans Administration National Drug File" . + "Ontology of RNA Sequencing" . + . + . + . + "https://bioregistry.io/metaregistry/"^^ . + "transcriptomics" . + . +_:N3aa07d85853c46a082ac4d2fe6ca36d9 "Matt Berriman" . + "http://sabiork.h-its.org/newSearch?q=$1"^^ . + "http://purl.org/oban/"^^ . + "http://purl.obolibrary.org/obo/UO_$1"^^ . + . + . + "ega.study" . + . + . + . + "obo" . + "chictr" . + . + "true"^^ . + . + . + "false"^^ . + "^\\w+_COVID19_[-\\w]+$"^^ . + . + . + "regulation" . + "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=$1"^^ . + . + . + "pathway" . + . + . + "miRBase Families" . + . + _:N1941aa3acb794f359c0dab40a07927ba . + . + "PACTR202304525632216"^^ . + "CALM1"^^ . + "structure" . + . + "false"^^ . + . + "http://id.nlm.nih.gov/mesh/vocab#$1"^^ . + . + . + "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references phosphorylation sites in proteins."^^ . + "miapa" . + "co_322" . + . + . + "crossref.funder" . + . + "Tuan Amith" . + "Plant Protein Phosphorylation DataBase (P3DB) is a database that provides information on experimentally determined phosphorylation sites in the proteins of various plant species. This collection references plant proteins that contain phosphorylation sites."^^ . + "regulation" . + . + . + . + "interaction" . + . + . + . + . + . + . + . + "ERM00000044"^^ . + "https://metabolicatlas.org/identifier/MetabolicAtlas/$1"^^ . + . + . + . + "Marc_Ciriello@hms.harvard.edu" . + . + "^\\d+$"^^ . + . + . + . + "ArrayExpress is a public repository for microarray data, which is aimed at storing MIAME-compliant data in accordance with Microarray Gene Expression Data (MGED) recommendations.This collection references the specific platforms used in the generation of experimental results."^^ . + "alignedWith"^^ . + "merops.inhibitor" . + . + "echobase" . + . "090701"^^ . - . - "gene" . - . - . - "Resource" . - . - . - . - "https://drks.de/search/en/trial/"^^ . - "biominder" . - . - . - "https://neurovault.org/images/$1"^^ . - "EC_CODE" . - "^\\d{7}$"^^ . - . -_:N5b264322e16445358ec3793e74d2c953 "helpdesk@cropontology-curationtool.org" . - . - "617102"^^ . - . - "gene" . - . - "^PA\\d+$"^^ . - . - . - "ko00071"^^ . - "CHEMONTID" . - . - "person" . - . - . - "KEGG Compound" . - . - "Matthias König" . - . - "false"^^ . - . - . - "AT4G01080"^^ . - . - . - "confident.series" . - . - . - "software and information systems" . - "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID="^^ . - "100101"^^ . - "BRENDA Ligand Group" . - "pharmacodb.dataset" . - . - "Henning Hermjakob" . - "life science" . - . - . - "false"^^ . - . - "life science" . - . - . - . - . - . - . - . - "5277619"^^ . - . - "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$"^^ . - "aap-1"^^ . - "dct" . - . - . - . - . - . - "protein structure" . - "topological-sampling/studios/f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a"^^ . - "101775319"^^ . - . - . - "https://www.cancer.gov/publications/dictionaries/cancer-drug/def/"^^ . - . - . - . - . - . - . - "iceberg.family" . - "^[a-z0-9\\-_]+$"^^ . - . - . - "IC9CM" . - . - . - "regulation" . - "teddy" . - . - . - . - . - "^\\d{7}$"^^ . - "life science" . - . - "^\\d{7}$"^^ . - "^\\d+$"^^ . - . - "mixs" . - . - . - "Transcriptional Regulatory Element Database" . - . - . - "edam.operation" . - "http://purl.obolibrary.org/obo/CRO_"^^ . - "false"^^ . - "dmendez@ebi.ac.uk" . - . - "http://www.gramene.org/db/genes/search_gene?acc="^^ . - . - . - . - . - . - "IPD-IMGT/HLA" . - . - "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=$1"^^ . - . - . - . - "louis@imbb.forth.gr" . - "9001411"^^ . - "runbiosimulations" . - . - "^\\d+$"^^ . - "ndfrt" . - . - . - "life science" . - . - . - . - . - . - . - . - "https://biofactoid.org/document/$1"^^ . - . - "nasc" . - . - "genome" . - "42840"^^ . - . - "ontology" . - "false"^^ . - . - . - . - "IntAct protein interaction database" . - "BeAn 70563"^^ . - . - . - "http://www.pharmgkb.org/drug/$1"^^ . - . - . - . - . - . - "aftol.taxonomy" . - . - . - . - . - . - . - "protein" . - . - . - . - . - . - "UM-BBD_compID" . - "wosid" . - . - . - . - . - "https://bioregistry.io/gard:"^^ . - . - . - . - . - . - . - . - . - . - . - . - . - . - "genomics" . - . - . - . - "http://purl.obolibrary.org/obo/FOBI_$1"^^ . - . - . - "bigg.reaction" . - "ontology" . - . - . - "small molecule" . - "http://qudt.org/schema/qudt#"^^ . - . + . + "famplex" . + . + . + "structure" . + . + . + . + "false"^^ . + "Blue Brain Project Topological sampling Knowledge Graph" . + "false"^^ . + . + . + . + "ontology" . + . + . + "^\\d{7}$"^^ . + "controlled vocabularies" . + "false"^^ . + . + "http://purl.obolibrary.org/obo/VBO_"^^ . + . + . + . + . + "davidos@ebi.ac.uk" . + "An ontology to support disciplinary annotation of Arctic Data Center datasets."^^ . + "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term=$1"^^ . + . + . + "glycomics" . + . + . + "http://www.wikidata.org/entity/$1"^^ . + . + "gene" . + "autdb" . + . + . + . + "^(?:\\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\\d+)?)$"^^ . + . + . + . + . + "CutDB" . + "RxNorm" . + . + "http://scicrunch.org/resolver/SCR_$1"^^ . + . + . + "Structural Classification of Protein - Stable Domain Identifier" . + . + . + "pubmed" . + . + . + "ensembl" . + . + "bioresource" . + . + . + . + "allele" . + "CO_325" . + "http://www.w3.org/ns/odrl/2/"^^ . + . + . + . + . + "^\\d{1,5}$"^^ . + . + . + . + "false"^^ . + . + "^PGS[0-9]{6}$"^^ . + . + . + "Tom Gillespie" . + . + . + "false"^^ . + . + . + . + "pfr" . + . + "protein" . + . + . + . + . + "^[a-z]{3}-[a-km-z0-9]{7}$"^^ . + . + . + . + . + . + "BioKC" . + . + "PeptideAtlas" . + . + "ontology" . + . + . + . + . + "PhosphoPOINT is a database of the human kinase and phospho-protein interactome. It describes the interactions among kinases, their potential substrates and their interacting (phospho)-proteins. It also incorporates gene expression and uses gene ontology (GO) terms to annotate interactions. This collection references kinase information."^^ . + . + "DRUGBANK_ID" . + "^\\d{7}$"^^ . + . + "subject agnostic" . + . + . + "false"^^ . + . + . + "chemistry" . + "^(E|D|S)RR[0-9]{6,}$"^^ . + . + . + . + . + . + "Chen Yang" . + . + "The Simple Knowledge Organization System (SKOS) is a common data model for sharing and linking knowledge organization systems via the Semantic Web. SKOS-XL defines an extension for the Simple Knowledge Organization System, providing additional support for describing and linking lexical entities.This document provides a brief description of the SKOS-XL vocabulary."^^ . + "false"^^ . + . + . + . + . + "NLXOEN" . + "synthetic biology" . + . + . + "false"^^ . + _:N079a0021d80a4a12a1492a0b06b42da6 . + . + . + . + . + "http://purl.obolibrary.org/obo/CHEMINF_"^^ . + "false"^^ . + . + . + "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_"^^ . + . + . + "NucleaRDB is an information system that stores heterogenous data on Nuclear Hormone Receptors (NHRs). It contains data on sequences, ligand binding constants and mutations for NHRs."^^ . + . + . + "ror" . + . + "SM0000020"^^ . + . + . + . + "MatrixDB Association" . + "The NeuroLex project is a dynamic lexicon of terms used in neuroscience. It is supported by the Neuroscience Information Framework project and incorporates information from the NIF standardised ontology (NIFSTD), and its predecessor, the Biomedical Informatics Research Network Lexicon (BIRNLex)."^^ . + . + . + . + "ontology" . + "idoden" . + "http://purl.obolibrary.org/obo/VariO_$1"^^ . + . + "ab275461"^^ . + . + . + . + . + . + . + "http://www.w3.org/ns/shex#"^^ . + . + . + . + "http://purl.obolibrary.org/obo/XLMOD_"^^ . + . + "biology" . + . + . + . + . + "The International Standard Serial Number (ISSN) is a unique eight-digit number used to identify a print or electronic periodical publication, rather than individual articles or books."^^ . + . + . + . + "computational biology" . + . + . + . + . + "research" . + . + . + "ontology" . + "ontology" . + . + . + . + "life science" . + "^\\d+$"^^ . + . + "http://purl.obolibrary.org/obo/EPO_$1"^^ . + . + "Collagen Mutation Database" . + . + . + "Paula.Duek@sib.swiss" . + . + . + . + . + . + "MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. This collection references individual metabolomics studies."^^ . + "https://www.flymine.org/flymine/report/ChromosomeBand/"^^ . + . + "The SugarBind Database captures knowledge of glycan binding of human pathogen lectins and adhesins, where each glycan-protein binding pair is associated with at least one published reference. It provides information on the pathogen agent, the lectin/adhesin involved, and the human glycan ligand. This collection provides information on ligands."^^ . + . + "^\\d+$"^^ . + . + . + "^\\w+$"^^ . + . + "https://www.inaturalist.org/taxa/$1"^^ . + . + . + . + . + "health science" . + . + . + . + "http://www.ces.clemson.edu/compbio/protcom/print_file.cgi?pdbid=$1"^^ . + . + "http://oid-info.com/get/"^^ . + "http://ratmap.org/Showgene.php?gene_stable_id="^^ . + . + . + "http://purl.obolibrary.org/obo/EO_"^^ . + "A type for entries in the Bioregistry's collections" . + . + . + . + "Medical Subject Headings Vocabulary" . + . + . + . + . + . + "Bloomington Drosophila Stock Center" . + . + . + . + . + "Units of measurement ontology" . + . + . + . + . + . + . + . + . + . + "false"^^ . + "National Center for Biotechnology Information Registry" . + . + . + "agriculture" . + . + "false"^^ . + . + . + "https://www.confident-conference.org/index.php/Event_Series:$1"^^ . + . + . + "PerkinElmer cell line collection" . + "protonet.proteincard" . + . + "ecology" . + "IMGT/HLA human major histocompatibility complex sequence database" . + . + "0000ffeb-36e0-4a29-b21d-84423bda979d"^^ . + "Datasets inside StoreDB"^^ . + . + "http://proteomecentral.proteomexchange.org/usi/?usi=mzspec:"^^ . + "HOVERGEN is a database of homologous vertebrate genes that allows one to select sets of homologous genes among vertebrate species, and to visualize multiple alignments and phylogenetic trees."^^ . + "subject agnostic" . + . + . + "false"^^ . + "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=$1"^^ . + . + "tumor" . + . + . + . + . + . + "Genomic Epidemiology Ontology" . + . + "true"^^ . + "sdap" . + "genome" . + . + "ontology" . + . + . + "lbo" . + . + . + . + . + "pathway" . + "unique academic work identifier assigned in Scopus bibliographic database"^^ . + . + . + . + . + "life science" . + . + . + . + . + . + . + . + . + . + "ENSG00000169174"^^ . + "ArchDB" . + . + . + . + . + . + . + . + . + "wikidata" . + . + . + "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=$1"^^ . + . + . + "^\\d+$"^^ . + "KEGG DRUG" . + . + . + "mdm" . + "Apple Ontology" . + . + "http://purl.obolibrary.org/obo/MmusDv_"^^ . + "hba" . + . + . + . + . + "subject agnostic" . + . + . + "Terminology of Anatomy of Human Histology" . + "life science" . + . + "rna" . + . + . + . + "CYP2A6"^^ . + . + "Chinese Clinical Trial Registry" . + . + . + . + "UMIN000049383"^^ . + . + . + "iro" . + . + . + . + . + . + . + . + . + . + "NIF Dysfunction" . + . + . + "https://bioregistry.io/beiresources:"^^ . + "CNP0171505"^^ . + . + "^EG\\d+$"^^ . + "msig" . + "Name Reaction Ontology" . + "disease" . + . + _:Nbf7a97dccfd548f696b51aada7d91000 . + . + . + . + "http://purl.obolibrary.org/obo/LABO_"^^ . + . + "obo" . + "^\\d+$"^^ . + "false"^^ . + . + "http://purl.obolibrary.org/obo/DC_CL_"^^ . + . + . + . + . + . + . + . + . + "https://www.addexbio.com/productdetail?pid="^^ . + . + "^[A-Za-z0-9]+$"^^ . + "^tgv[0-9]+$"^^ . + . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/dbvar/studies/"^^ . + "false"^^ . + . + "life science" . + . + . + . + "https://cropontology.org/rdf/CO_345:"^^ . + "drugbank.reaction" . + "WWF" . + . + . + "subject agnostic" . + "co_348" . + . + "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=$1"^^ . + . + "6000122"^^ . + . + "https://www.kegg.jp/entry/"^^ . + . + "Bioregistry Schema" . + "DB-0174"^^ . + "tair.protein" . + "classification" . + . + . + . + "^\\w+$"^^ . + "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_$1"^^ . + . + . + . + . + . + "http://purl.obolibrary.org/obo/TADS_"^^ . + . + . + . + . + . + . "http://aber-owl.net" . - . - "NLXINV includes funding agencies and some terms related to documenting scientific investigations data acquisition and analysis."^^ . - . - . - . - "genome" . - "Simon Jupp" . - "https://www.storedb.org/store_v3/study.jsp?studyId=$1"^^ . - . - "protein" . - . - "false"^^ . - . - "yuki.yamagata@riken.jp" . - "pina" . - "http://purl.obolibrary.org/obo/FIX_"^^ . - "31623"^^ . - "BioSchemas" . - "csp" . - "protclustdb" . - "https://e-cyanobacterium.org/models/model/$1"^^ . - "0058"^^ . - "An ontology of physico-chemical methods and properties."^^ . - "genetics" . - . - "http://fossilworks.org/?a=taxonInfo&taxon_no="^^ . - . - . + "https://www.ebi.ac.uk/QuickGO/GProtein?ac=$1"^^ . + "obo" . + . + . + . + . + . + . + . + . + . + "STUDY1040"^^ . + . + . + . + "virology" . + . + . + . + . + . + . + . + "http://www.antweb.org/specimen.do?name=$1"^^ . + . + . + "http://purl.obolibrary.org/obo/TAHE_$1"^^ . + "DragonDB is a genetic and genomic database for Antirrhinum majus (Snapdragon). This collection refers to Locus information."^^ . + . + "false"^^ . + "https://mmp.sfb.uit.no/databases/marref/#/records/$1"^^ . + . + . + "grin" . + . + . + . + "obo" . + . + . + . + . + . + "fao.asfis" . + . + . + . + . + . + . + "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id="^^ . + . + "https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_caid?caid=$1"^^ . + . + . + "Eukaryotic Promoter Database" . + . + . + "Ceri Van Slyke" . + "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds."^^ . + "false"^^ . + . + . + . + . + "http://www.w3.org/ns/oa#$1"^^ . + . + . + "Description of Plant Viruses" . + . + "Gene Normal Tissue Expression" . + "biofactoid" . + "ncbitaxon" . + "^\\d+$"^^ . + "http://www.drugtargetontology.org/dto/DTO_$1"^^ . + "life science" . + "genbank" . + . + . + . + "11002"^^ . + "http://purl.obolibrary.org/obo/HTN_$1"^^ . + . + "ATCC(dna)" . + "cell" . + . + . + . + . + . + "BrainInfo is designed to help you identify structures in the brain. If you provide the name of a structure, BrainInfo will show it and tell you about it."^^ . + . + . + . + "dashr.expression" . + . + "http://purl.obolibrary.org/obo/CMF_$1"^^ . + . + "Microbial Conditions Ontology" . + . + . + . + "IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic polymorphisms and phylogenetic relationships comparatively."^^ . + . + . + "botany" . + . + . + "health science" . + "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=EN&Expert=$1"^^ . + "PRO_0000016681"^^ . + . + "false"^^ . + . + . + . + . + . + . + . + "f0ba2f3e-aa6f-4264-8d18-8ee65cf6f61a"^^ . + "Lorenz Reimer" . + . + . + . + . + . + . + "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q="^^ . + "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id="^^ . + . + "http://en.wikipedia.org/wiki/$1"^^ . + "http://igsn.org/$1"^^ . + "vo" . + . + . + . + . + . + . + . + "Vilma Hualla Mamani" . + "http://plugins.biogps.org/cgi-bin/wp.cgi?id=$1"^^ . + "true"^^ . + . + "http://www.bootstrep.eu/ontology/GRO#"^^ . + . + . + . + . + "0000022"^^ . + "FundRef" . + . + "http://www.itb.cnr.it/cellcycle/gene_rep.php?gene_name=$1"^^ . + "https://cropontology.org/rdf/CO_365:$1"^^ . + "P0DP23"^^ . + "ICD9CM_2006" . + "NA06985"^^ . + "b97957"^^ . + . + . + "Jennifer Smith" . + "The Molecular Modeling Database (MMDB) is a database of experimentally determined structures obtained from the Protein Data Bank (PDB). Since structures are known for a large fraction of all protein families, structure homologs may facilitate inference of biological function, or the identification of binding or catalytic sites."^^ . + "AP00378"^^ . + . + "development" . + . + . + "https://w3id.org/linkml/$1"^^ . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/PR_$1"^^ . + "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-"^^ . + . + . + "annethessen@gmail.com" . + "None"^^ . + "false"^^ . + . + "https://cropontology.org/rdf/CO_338:"^^ . +_:Nbf7a97dccfd548f696b51aada7d91000 "Jonathan Bard" . + . + "false"^^ . + . + . + "structure" . + . + . + . + "Molbase" . + "false"^^ . + . + . + . + . + . + "^\\d{7}$"^^ . + . + "NEMBASE is a comprehensive Nematode Transcriptome Database. NEMBASE4 includes robust protein predictions (NemPep4), and protein families for 63 nematode species, over 600,000 ESTs and over 250,000 proteins."^^ . + . + . + . + . + . + . + "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation."^^ . + . + "enzymology" . + . + . + . + "true"^^ . + "preclinical studies" . + . + . + . + "^\\d+$"^^ . + "GlycoMapsDB" . + . + . + "datanator.reaction" . + . + . + "ornaseq" . + "Insertion sequence elements database" . + . + "umls.sty" . + . . -_:N9278d875d4954bfe96e8c9fb58122b64 "pierre.sprumont@unifr.ch" . - . - . - "ontology" . - . - "https://www.wikidata.org" . - "Influenza Research Database (IRD) contains information related to influenza virus, including genomic sequence, strain, protein, epitope and bibliographic information. The Segment Details page contains descriptive information and annotation data about a particular genomic segment and its encoded product(s)."^^ . - "^CHEMBL\\d+$"^^ . - "Cell line collections (Providers)"^^ . - . - "false"^^ . - . - "snoRNABase" . - . - "co_359" . - "enrique.blanco@crg.eu" . - . - . - . - "Sea lice (Lepeophtheirus salmonis and Caligus species) are the major pathogens of salmon, significantly impacting upon the global salmon farming industry. Lice control is primarily accomplished through chemotherapeutants, though emerging resistance necessitates the development of new treatment methods (biological agents, prophylactics and new drugs). LiceBase is a database for sea lice genomics, providing genome annotation of the Atlantic salmon louse Lepeophtheirus salmonis, a genome browser, and access to related high-thoughput genomics data. LiceBase also mines and stores data from related genome sequencing and functional genomics projects."^^ . - "^\\d+$"^^ . - "https://omabrowser.org/oma/hog/HOG:$1"^^ . - "vendor" . - "1200"^^ . - "DRUGBANK_ID" . - "CL070"^^ . - . - "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information."^^ . - . - . - . - . - . - "HAMAP is a system that identifies and semi-automatically annotates proteins that are part of well-conserved and orthologous microbial families or subfamilies. These are used to build rules which are used to propagate annotations to member bacterial, archaeal and plastid-encoded protein entries."^^ . - "gsfa" . - . - . - . - . + . + . + . + "http://cell-lines.toku-e.com/Cell-Lines_$1.html"^^ . + . + "Database of validation results for ligands and non-standard residues in the Protein Data Bank."^^ . "LigandBook" . - . - . - . - . - . - . - . - . - "An application ontology built for beta cell genomics studies."^^ . - . - . - "EchoBASE post-genomic database for Escherichia coli" . - . - "obo" . - "1"^^ . - "ontology" . - . - . - "SIGNOR-252737"^^ . - . - "Data Science Ontology" . - . - . - . - . - "cpt" . - "NASA GeneLab" . - "The CDC's National Center of Immunization and Respiratory Diseases (NCIRD) developed and maintains the CVX (vaccine administered) code set. The table below has the most up to date values. It includes both active and inactive vaccines available in the US. CVX codes for inactive vaccines allow transmission of historical immunization records."^^ . - "structure" . - . - . - "WBRNAi00086878"^^ . - . - . - "false"^^ . - . + . + . + . + . + . + . + "Amphibian taxonomy" . + "Life cycle stages for Medaka"^^ . + . + . + "ontology" . + . + . + . + . + . + . + . + . + . + . + "101"^^ . + . + "https://gudmap.org/id/"^^ . + . + . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/EHDAA_$1"^^ . + . + . + "pathway" . + . + . + "KEGG Environ" . + . + . + "https://www.imanislife.com/?s="^^ . + . + "life science" . + . + . + . + . + . + "obo" . + . + "^[a-zA-Z0-9_-]{3,}$"^^ . + "miriam.resource" . + . + "https://www.wormbase.org/db/seq/protein?name="^^ . + . + . + "The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms."^^ . + . + . + . + . + . + . + "life science" . + "katy@indiana.edu" . + . + . + . + "101"^^ . + . + "gmd.profile" . + . + . + . + . + "https://www.imanislife.com/?s=$1"^^ . + . + . + . + "Medical Dictionary for Regulatory Activities" . + "ontology" . + . + . + . + "https://vac.niaid.nih.gov/view?id=$1"^^ . + . + "Rat Genome Database qTL" . + . + . + . + "molecular biology" . + . + . + . + "biomedical science" . + "^(c|k)\\d{7}$"^^ . + "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets."^^ . + "health science" . + . + "luana.licata@gmail.com" . + . + . + . + . + . + "life science" . + . + "life science" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "https://www.eionet.europa.eu/gemet/en/concept/$1"^^ . + "F11903"^^ . + "Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them."^^ . + . + . + "^\\w+$"^^ . + "cheminformatics" . + . + "vmhmetabolite" . + . + . + . + . + "alignment" . + . + . + "gene" . + . + "Ryan Brinkman" . + . + . + "Amos Bairoch" . + "RE" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "bdgp.est" . + . + . + . + "david.c.blackburn@gmail.com" . + . + . + . + . + "http://purl.org/dc/terms/$1"^^ . + . + "50-00-0"^^ . + "http://www.crop2ml.org/cropmdb/$1"^^ . + . + . + . + . + . + . + . + . + . + . + "https://cropontology.org/rdf/CO_326:$1"^^ . + "agricultural engineering" . + . + "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$"^^ . + "A Drug Identification Number (DIN) is a computer-generated eight digit number assigned by Health Canada to a drug product prior to being marketed in Canada. It uniquely identifies all drug products sold in a dosage form in Canada and is located on the label of prescription and over-the-counter drug products that have been evaluated and authorized for sale in Canada."^^ . + . + . + . + . + . + . + . + "Heather Piwowar" . + . + "https://fungidb.org/fungidb/app/record/gene/$1"^^ . + . + "reaction" . + . + "bioinformatics" . + "https://www.kegg.jp/entry/"^^ . + "life science" . + "^\\d+$"^^ . + . + "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id="^^ . + . + . + "^\\d{5}$"^^ . + . + . + . + "biomedical science" . + . + "http://www.w3.org/2001/XMLSchema#"^^ . + . + "^\\d+$"^^ . + . + . + "yperez@ebi.ac.uk" . + "ontology" . + . + . + . + . + . + "true"^^ . + . + "false"^^ . + "^\\w+$"^^ . + . + "srao" . + . + . + . + "ontology" . + . + "Lars Holm Nielsen" . + . + "https://bioregistry.io/pmap.substratedb:"^^ . + "Molbase provides compound data information for researchers as well as listing suppliers and price information. It can be searched by keyword or CAS indetifier."^^ . + "genetics" . + "Resource Description Framework" . + "phenotype" . + . + . + . + . + . + "taxonomy" . + . + "life sciences" . + . + . + . + "037727"^^ . + . + . + . + . + "The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data."^^ . + . + "Gramene protein" . + . + . + "Allergome" . + "ma" . + . + "false"^^ . + "Célia Michotey" . + . + . + "Michael Baudis" . + . + . + "https://biopragmatics.github.io/providers/pba/$1"^^ . + . + . + . + . + "An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time."^^ . + . + "worldavatar.compchem" . + . + "^\\d+$"^^ . + "false"^^ . + . + "false"^^ . + . + "1038233"^^ . + . + . + "http://www.ebi.ac.uk/goldman-srv/pandit/pandit.cgi?action=browse&fam=$1"^^ . + "https://fairsharing.org/users/"^^ . + . + . + . + . + . + "seed.reaction" . + "145"^^ . + . + . + . + "covoc" . + "obi" . + . + "co_370" . + . + . + "false"^^ . + . + "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?"^^ . + . + . + . + "1h68"^^ . + "prefixcommons" . + . + . + . + "biopragmatics/bioregistry"^^ . + . + "epidemiology" . + "https://biopragmatics.github.io/providers/mba/"^^ . + . + . + "Foods in FooDB"^^ . + . + "oncotree" . + . + "prov" . + "^\\w+$"^^ . + "h_aktPathway"^^ . + . + "The NHMRC Australian PhenomeBank (APB) is a non-profit repository of mouse strains used in Medical Research. The database allows you to search for murine strains, housed or archived in Australia, carrying mutations in particular genes, strains with transgenic alterations and for mice with particular phenotypes. 1876 publicly available strains, 922 genes, 439 transgenes The APB has two roles: Provide and maintain a central database of genetically modified mice held in Australia either live or as cryopreserved material; Establish and maintain a mouse strain archive. Strains are archived as cryopreserved sperm or embryos. [from RRID]"^^ . + . + "cell biology" . + "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:"^^ . + "true"^^ . + . + "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$"^^ . + . + . + . + . + "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID=$1"^^ . + "health science" . + . + . + . + . + . + . + "kclb" . + "life science" . + "false"^^ . + . + . + . + "structural biology" . + . + . + . + . + . + . + . + "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis="^^ . + "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=$1"^^ . + . + "zfa" . + . + "http://www.kegg.jp/entry/"^^ . + . + . + . + "true"^^ . + . + "clinical studies" . + . + . + . + . + . + . + . + "- DEPRECATION NOTE -\nPlease, keep in mind that this namespace has been superseeded by ‘gold’ prefix at https://registry.identifiers.org/registry/gold, and this namespace is kept here for support to already existing citations, new ones would need to use the pointed ‘gold’ namespace.\n\nThe GOLD (Genomes OnLine Database)is a resource for centralised monitoring of genome and metagenome projects worldwide. It stores information on complete and ongoing projects, along with their associated metadata. This collection references the sequencing status of individual genomes."^^ . + . + . + "ontology" . + . + . + "Cellosaurus Registry" . + . + . + "http://beetlebase.org/cgi-bin/gbrowse/BeetleBase3.gff3/?name="^^ . + . + . + . + . + . + . + "life science" . + "ontology" . + "IGSN is a globally unique and persistent identifier for material samples and specimens. IGSNs are obtained from IGSN e.V. Agents."^^ . + "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=$1"^^ . + . + . + "ontology" . + . + "http://purl.obolibrary.org/obo/TRANS_$1"^^ . + . + "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id="^^ . + . + . + . + . + "Ontology of Arthropod Circulatory Systems" . + "7207"^^ . + . + "MOL000160"^^ . + "https://www.rebuildingakidney.org/id/"^^ . + "K00973"^^ . + . + . + "https://bykdb.ibcp.fr/data/html/annotated/$1.html"^^ . + "fisheries science" . + "The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020)."^^ . + . + "sequenced strain" . + . + "sael" . + . + "nucleic acid" . + "Elspeth Bruford" . + "10087"^^ . + "NeuroNames" . + . + "false"^^ . + . + "The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of clinical trials. Thereby covering clinicaltrails.gov. CoreCTO will serve as a basic ontology to generate extended versions for specific applications such as annotation of variables in study documents from clinical trials."^^ . + . + . + "ecmdb" . + . + . + . + "Golm Metabolome Database Analyte" . + . + "MetaCyc is a curated database of experimentally elucidated metabolic pathways from all domains of life. MetaCyc contains 2526 pathways from 2844 different organisms. MetaCyc contains pathways involved in both primary and secondary metabolism, as well as associated metabolites, reactions, enzymes, and genes. The goal of MetaCyc is to catalog the universe of metabolism by storing a representative sample of each experimentally elucidated pathway."^^ . + . + "mutant" . + . + . + "83088"^^ . + "GWAS Central Phenotype" . + "PTM-0450"^^ . + . + . + "worm" . + . + "IHW09326"^^ . + . + "biomedical science" . + . + "Manually curated collections of resources stored in the bioregistry"^^ . + . + . + . + "http://sugarbind.expasy.org/$1"^^ . + . + "bioschemas" . + . + . + . + . + . + "microscope" . + "Database of Interacting Proteins" . + "^FB\\w{2}\\d{7}$"^^ . + "classification" . + . + "http://www.cathdb.info/domain/"^^ . + . + . + . + "irefweb" . + . + . + . + . + "An ontology of core ecological entities" . + "http://emmo.info/emmo/cif-core#$1"^^ . + . + . +_:N3aa07d85853c46a082ac4d2fe6ca36d9 "mb4@sanger.ac.uk" . + . + "Genome Aggregation Database" . + . + "https://civicdb.org/links/drugs/$1"^^ . + . + . + "OMIMPS" . + "NIF Standard Ontology: Neurolex" . + "GeneFarm" . + "K00001"^^ . + "https://www-is.biotoul.fr/scripts/ficheIS.php?name=$1"^^ . + . + "^\\d+$"^^ . + "http://www.wikigenes.org/e/gene/e/$1.html"^^ . + . + . + . + "^\\w+$"^^ . + . + . + . + . + "life science" . + . + . + . + "life science" . + . + . . - . - . - . - "antibodies" . - . - . - . - . - . - . - . - . - . - . - "protein" . - "false"^^ . - "aop.stressor" . - . - . - . - "http://redfly.ccr.buffalo.edu/?content=/view_detail.php&crm_id="^^ . - . - . - . - . - "plant breeding" . - "SABIO Reaction Kinetics" . - . - . - . - . - "Integrated Canine Data Commons" . - "https://orcid.org/$1"^^ . - "life science" . - "Cell line collections (Providers)"^^ . - . - . - . - "false"^^ . - . - "obo" . - . - "http://purl.obolibrary.org/obo/ZP_$1"^^ . - . - "ontology" . - "Scientific Evidence and Provenance Information Ontology" . - . - "pfam" . - . - "https://ontology.iedb.org/ontology/ONTIE_"^^ . - "http://uri.neuinfo.org/nif/nifstd/sao$1"^^ . - . - "An expanded example URL for a resource or metaresource." . - . - "iNaturalist Taxonomy" . - "http://purl.obolibrary.org/obo/NOMEN_$1"^^ . - . - "http://purl.obolibrary.org/obo/VIDO_"^^ . - "^\\d+$"^^ . - "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster="^^ . - . - . - "0000088"^^ . - . - "0000001"^^ . - "dbpedia" . - . - . - . - "The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another."^^ . - "registry" . - . - . - . - . - "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist="^^ . - "anatomy" . - "Rosa2"^^ . - . - "^RBR-\\w+$"^^ . - "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID="^^ . - "GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes."^^ . - "UBPROP" . - . - . - . - . - "https://www.xenbase.org/entry/$1"^^ . - "The Common Terminology Criteria for Adverse Events (CTCAE),[1] formerly called the Common Toxicity Criteria (CTC or NCI-CTC), are a set of criteria for the standardized classification of adverse effects of drugs used in cancer therapy. The CTCAE system is a product of the US National Cancer Institute (NCI)."^^ . - "THE1B"^^ . - "https://cells.ebisc.org/$1"^^ . - . - "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes. This collection references analytes."^^ . - . - . - . - . - . - "^\\d+$"^^ . - . - "omics" . - "ontology" . - "false"^^ . - "false"^^ . - "biomedical science" . - . - "genetics" . + . + . + . + . + . + . + . + "biomedical science" . + . + . + "Endogenous Regulatory OligoPeptide knowledgebase-Moscow" . + . + . + . + . + . + "dna" . + . + . + "rxn00001"^^ . + . + "protein" . + . + . + . + . + "wmueller@gbf.de" . + . + . + . + . + . + . + . + . + . + "3000887619"^^ . + "^\\d{5}$"^^ . + "NeuroMorpho" . + . + . + . + . + . + "AB0"^^ . + "false"^^ . + . + . + . + "http://purl.obolibrary.org/obo/ERO_"^^ . + . + . + "false"^^ . + . + . + "https://repeatsdb.org/protein/"^^ . + "PubMed" . . - . - . - . - "https://cropontology.org/term/$1:$2" . - . - . - . - . - . - "funcbase.human" . - "Alliance of Genome Resources Knowledge Base" . - . - . - . - . - "https://www.emsl.pnnl.gov/project/"^^ . - . - . - . - "http://purl.bioontology.org/ontology/HCPCS/$1"^^ . - . - . - . - "https://biopragmatics.github.io/providers/scomp/$1"^^ . - "https://biopragmatics.github.io/providers/icepo/"^^ . - . - "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=$1"^^ . - . -_:Nbb9e881fa6a1437d9071cb8f83b46898 "LOINC Support" . - . - "life science" . - . - . - "Integrated Taxonomic Information System" . - "10.1621/vwN2g2HaX3"^^ . - . - . - . - . - "https://lincs.hms.harvard.edu/db/antibodies/$1"^^ . - . - . - . - . - "dwelter.ontologist@gmail.com" . - . - . - . - . - . - . - . - . - "351"^^ . - . - . - "Cell line databases/resources"^^ . - "^[AEP]-\\w{4}-\\d+$"^^ . - "r3d100014165" . - "Interlinking Ontology for Biological Concepts (IOBC) contains approximately 80,000 biological concepts such as biological phenomena, diseases, molecular functions, gene products, chemicals, and medical cares, and approximately 20,000 related concepts such as earth science and environmental science. The concepts are structured by thirty-five relations such as has function, has role, has quality, and precedes. Each concept has both of English and Japanese labels. For further information including the developmental method, see papers in the PUBLICATIONS PAGE. The license for this ontology is specified in the Creative Commons Attribution-NonCommercial 4.0 International. If you use data from this ontology, please be sure attribute this ontology as follows: \"Interlinking Ontology for Biological Concepts © National Bioscience Database Center licensed under CC Attribution-NonCommercial 4.0 International\"."^^ . - . - "http://www.receptors.org/nucleardb/proteins/$1"^^ . - . - . - . - "false"^^ . - . - . - . - . - "vendor" . - . - . - "BioCarta Pathway" . - "false"^^ . - . - . - "SEO is a reference ontology for modelling data about scientific events such as conferences, symposioums and workshops."^^ . - . - . - "genome" . - . - . - . - . - . - . - . - . - . - . - . - . - "^[0-9]{8}$"^^ . - . - "http://purl.obolibrary.org/obo/COVIDO_$1"^^ . - . - "obo" . - "NCI Thesaurus" . - . - . - . - . - "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=$1"^^ . - "http://purl.obolibrary.org/obo/MAT_"^^ . - . - "The GWAS Catalog provides a consistent, searchable, visualisable and freely available database of published SNP-trait associations, which can be easily integrated with other resources, and is accessed by scientists, clinicians and other users worldwide."^^ . - . - . - . - "ontology" . - . - . - "false"^^ . - "National Microbiome Data Collaborative" . - . - "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes."^^ . - "CHEMBL465070"^^ . - "obo" . - . - . - "pharmacodb.tissue" . - . - "Cell line collections (Providers)"^^ . - . - "grsdb" . - . - "civic.tid" . - . - . - "false"^^ . - "International Traditional Medicine Clinical Trial Registry" . - "NCIt" . - . - "^[A-Z]+[0-9]+$"^^ . - . - . - . - "https://identifiers.org/$1:$2" . - "gold.genome" . - "http://kinase.bioinformatics.tw/showall.jsp?type=PhosphoProtein&info=Gene&name=$1&drawing=0&sorting=0&kinome=0"^^ . - . - . - "life science" . - "life science" . - "The American Type Culture Collection (ATCC) is a private, nonprofit biological resource center whose mission focuses on the acquisition, authentication, production, preservation, development and distribution of standard reference microorganisms, cell lines and other materials for research in the life sciences."^^ . - . - "satyasahoo@ieee.org" . - "Molecular Process Ontology" . - . - . - . - . - . - "https://www.imanislife.com/?s=$1"^^ . - . - . - . - . - "http://www.guidetopharmacology.org/GRAC/FamilyDisplayForward?familyId="^^ . - . - "The Morpheus model repository is an open-access data resource to store, search and retrieve unpublished and published computational models of spatio-temporal and multicellular biological systems, encoded in the MorpheusML language and readily executable with the Morpheus software.\n"^^ . - . - . - . - "^ARBA\\d+$"^^ . - . - "pathway" . - . - . - . - . - . - . - . - "false"^^ . - "false"^^ . - . - . - . - . - . - . - "functional genomics" . - . - "5HT3Arano"^^ . - . - . - . - . - . - . + . + . + . + . + . + . + . + "false"^^ . + "TDR" . + "EcoPortal" . + . + "https://bartoc.org/en/node/$1" . + "The RESID Database of Protein Modifications is a comprehensive collection of annotations and structures for protein modifications including amino-terminal, carboxyl-terminal and peptide chain cross-link post-translational modifications."^^ . + "^[0-9A-Za-z\\-.]+$"^^ . + . + . + . + "https://bioregistry.io/schema/#"^^ . + . + . + "nmckenna@bcm.edu" . + "0005147"^^ . + . + "^\\d{7}$"^^ . + "drug" . + . + . + . + "protein" . + "true"^^ . + . + "9606117"^^ . + . + . + "alberto.traverso@maastro.nl" . + "false"^^ . + . + . + "label"^^ . + "The BDGP EST database collects the expressed sequence tags (ESTs) derived from a variety of tissues and developmental stages for Drosophila melanogaster. All BDGP ESTs are available at dbEST (NCBI)."^^ . + "agriculture" . + . + . + . + "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=$1"^^ . + . + "ontology" . + . + . + "biomedical science" . + . + "The Ontology for Nutritional Studies (ONS) has been developed as part of the ENPADASI European project (http://www.enpadasi.eu/) with the aim to define a common language and building ontologies for nutritional studies."^^ . + . + . + . + . + . + . + . + "^4DN[A-Z]{2}[A-Z0-9]{7}$"^^ . + "http://modelseed.org/biochem/compounds/$1"^^ . +_:N6f401262a7d84d76b6c84f6fcb7f2f2f "albertgoldfain@gmail.com" . + . + . + "German Clinical Trials Register" . + . + "owl" . + . + . + "The Gemeinsame Normdatei (Integrated Authority File) or GND is an international authority file for person names, subject headings and corporate bodies. It is used mainly for documentation in libraries and increasingly also by archives and museums. The GND is managed by the German National Library in cooperation with various regional library networks in German-speaking Europe and other partners."^^ . + . + . + . + . + . + . + "chebi"^^ . + "MarRef is a manually curated marine microbial reference genome database that contains completely sequenced genomes."^^ . + "shareloc" . + . + "false"^^ . + . + "biomedical science" . + . + . + . + . + "false"^^ . + . + . + . + . + "European Mouse Mutant Archive" . + . + . + . + . + . + . + . + . + . + . + . + . + . + "gene" . + "false"^^ . +_:N14dff4050e56443cbb5c64756bfee9df "Michael Lincoln" . + . + . + . + . + . + . + "SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The kinetic record data set provides information regarding the kinetic law, measurement conditions, parameter details and other reference information."^^ . + . + "Tudor Oprea" . + . + . + . +_:N80b3ec35ee2f44e1bd79e2dfa8a15987 "helpdesk@cropontology-curationtool.org" . + "https://webchem.ncbr.muni.cz/Platform/ValidatorDb/ByStructure/"^^ . + . + . + . + . + . + . + . + . + . + . + "safisher@upenn.edu" . + "http://cegg.unige.ch/orthodb/results?searchtext="^^ . + . + . + . + . + . + "sharkipedia.species" . + . + . + . + "nuclearbd" . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + "The Transport Systems Tracker (TranSyT) is a tool to identify transport systems and the compounds carried across membranes."^^ . + . + "Elizabeth Arnaud" . + "^\\d+$"^^ . + . + "4QHKG"^^ . + "structure" . + . + . + . + . + . + "life science" . + "greengenes" . + "PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. PubChem bioassay archives active compounds and bioassay results."^^ . + . + . + . + "GC06M052656"^^ . + "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC="^^ . + "ICD10" . + . + "http://purl.obolibrary.org/obo/HEPRO_"^^ . + . + "drug discovery" . + . + . + . + "environmental science" . + . + . + . + . + . + . + . + . + . + . + . + "false"^^ . + "chemistry" . +_:N2b6feb67a2df4a55a5abd72287a761f9 "Crop Ontology Helpdesk" . + . + . + . + "Richard Boyce" . + . + . + . + "genetics" . + "^BE\\d{7}$"^^ . + . + . + . + "anatomy" . + . + . + . + . + . + "enzo" . + "http://europepmc.org/articles/$1"^^ . + "The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences."^^ . + "false"^^ . +_:Nbf7a97dccfd548f696b51aada7d91000 "j.bard@ed.ac.uk" . + . + . + . + "http://www.w3.org/2004/02/skos/core#$1"^^ . + "http://purl.obolibrary.org/obo/ICEO_"^^ . + "sequence" . + . + . + "UniRule" . + . + . + "knowledge and information systems" . + . + . + "obo" . + . + . + . + "Sweet Potato Trait Dictionary in template v5 - CIP - November 2019"^^ . + "protein" . + . + "An ontology of Drosophila melanogaster anatomy."^^ . + "https://viralzone.expasy.org/$1"^^ . + . + "dragondb.protein" . + "mw.project" . + "https://www.checklistbank.org/dataset/3LR/taxon/"^^ . + . + "anatomy" . + . + "life science" . + . + . + . + . + . + "false"^^ . + . + . + . + "kegg.drug" . + . + . + "true"^^ . + . + . + "100"^^ . + . + . + . + . + "plant breeding" . + . + . + . + . + . + . + . + . + "Sorghum TDv5 - Oct 2019"^^ . + . + . + . + "false"^^ . + "chemistry" . + "live animal" . + . + . + "enviPath" . + . + "Darren Natale" . + . + . + "ontology" . + "life science" . + "^\\d+$"^^ . + "false"^^ . + . + . + "http://purl.obolibrary.org/obo/PHIPO_"^^ . + . + "protein" . + . + . + "false"^^ . + . + . + . + . + . + "568815597"^^ . + "physiology" . + "https://www.fisheries.noaa.gov/species/"^^ . + "transcriptomics" . + . + . + "^\\d{9}$"^^ . + . + . + . + "005012"^^ . + . + . + "taxonomy" . + "Rodent Unidentified Gene-Encoded Large Proteins" . + . + "An ontology which represents information about the State of Alaska's Salmon and People (SASAP) project, as well as knowledge about salmon, features of their habitats, salmon stakeholders, and related entities."^^ . + . + "false"^^ . + . + "small molecule" . + . + . + . + . + "ovae" . + . + "https://bioregistry.io/leafsnap:"^^ . + . + . + "fetal fibroblast" . + . + . + . + . + . + . + "pathway" . + . + . + . + . + "life science" . + "PF11779"^^ . + . + "A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number."^^ . + "CVCL" . + . + . + . + . + . + "ontology" . + . + . + "false"^^ . + "Luis González-Montaña" . + . + . + . + "hinv.locus" . + "protein" . + . + . + . + . + . + . + . +_:N48b7279c0aaa4cfba617c45096343b1a "chebi-help@ebi.ac.uk" . + "Developing Mouse Brain Atlas" . + . + . + . + . + . + . + . + . + . + "napp" . + . + . + . + "obo" . + . + . + . + . + . + "MicroScope" . + "knowledge and information systems" . + "ontology" . + "genome" . + . + . + . + "KEGG_RCLASS" . + "computational chemistry" . + "dermo" . + . . - "^HIX\\d{7}(\\.\\d+)?$"^^ . -_:N3fb4500a7133478882c829d9fdb72cce "Crop Ontology Helpdesk" . - "http://biohackathon.org/resource/faldo#"^^ . - . - "http://purl.obolibrary.org/obo/PD_ST_$1"^^ . - . - "https://civicdb.org/links/variant/"^^ . - . - . - . - . - . - "false"^^ . - . - "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#"^^ . - "The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . - "17503"^^ . - . - . - "biology" . - . - . - . - "false"^^ . - "addgene" . + . + "DeBiO" . "Nonribosomal Peptides Database" . - "^\\d{7}$"^^ . - . - . - . - . - "ontology" . - . - . - . - . - . - . - . - . - "small molecule" . - . - "The NIST Chemistry WebBook provides users with easy access to chemical and physical property data for chemical species through the internet. The data provided in the site are from collections maintained by the NIST Standard Reference Data Program and outside contributors. Data in the WebBook system are organized by chemical species."^^ . - . - . - "https://bioregistry.io/resolve/github/issue/"^^ . - "Almost every product on our site has its own ASIN, a unique code we use to identify it. For books, the ASIN is the same as the ISBN number, but for all other products a new ASIN is created when the item is uploaded to our catalogue."^^ . - . - "false"^^ . - . - . - . - . - "agriculture" . - . - . - "http://www.w3.org/2000/01/rdf-schema#"^^ . - . - . - "The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization."^^ . - "CMPO is a species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations."^^ . - "Data Use Ontology" . - . - "DrugBank" . - . - "Enzyme Commission Code" . - . - "0000038"^^ . - . - . - . - . - . - "^[0-9]+$"^^ . - . - . - "NCI Data Commons Framework Services" . - "false"^^ . - "IP" . - . - . - . + "Phenol-Explorer is an electronic database on polyphenol content in foods. Polyphenols form a wide group of natural antioxidants present in a large number of foods and beverages. They contribute to food characteristics such as taste, colour or shelf-life. They also participate in the prevention of several major chronic diseases such as cardiovascular diseases, diabetes, cancers, neurodegenerative diseases or osteoporosis."^^ . + . + . + . + "false"^^ . + . + "c.dudek@tu-braunschweig.de" . + "AT4G01080"^^ . + . + . + "one" . + . + . + . + "characterisation data heat" . + . + "civic.mpid" . + . + "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/$1"^^ . + "glycoepitope" . + . + . + "Nikolaos Moustakas" . + . + . + . + "true"^^ . + "FBbt_root" . + "molbase.sheffield" . + . + . + . + "UMLS_ICD9CM_2005_AUI" . + . + . + . + . + "A structured controlled vocabulary of the anatomy of mosquitoes."^^ . + . + . + . + . + . + . + . + . + . + "TIGRFAMs is a resource consisting of curated multiple sequence alignments, Hidden Markov Models (HMMs) for protein sequence classification, and associated information designed to support automated annotation of (mostly prokaryotic) proteins."^^ . + . + . + . + . + "Reference"^^ . + . + "https://www.confident-conference.org/index.php/Event:"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "developmental biology" . + . + . + "matrixdb.association" . + . + "ChEMBL" . + . + . + . + . + . + "An ontology to capture confidence information about annotations."^^ . + . + "^\\d{7}$"^^ . + "KG09531"^^ . + . + . + . + "kegg.pathway" . + . + "http://purl.obolibrary.org/obo/PAO_$1"^^ . + . + . + . + . + "http://matrixdb.univ-lyon1.fr//cgi-bin/current/newPort?type=association&value=$1&class=Association"^^ . + . + . + . + . + "Bill Hogan" . + . + . + . + "orth" . + "https://biofactoid.org/document/"^^ . + . +_:Nbeca5cf2048d406d84b6c71368a16938 "BioModels.net team" . + . + "AddexBio cell line products" . + . + . + . + . + . + . + . + . + . + "https://bioregistry.io/collection/$1"^^ . + "DOULIX lab-tested standard biological parts, in this case, full length constructs."^^ . + "life science" . + . + "ALA"^^ . + "Model Card Report Ontology" . + . + "http://purl.obolibrary.org/obo/OPMI_"^^ . + . + . + . + "mouse" . + . + . + . + . + "mpid" . + . + . + "obo" . + . + "hrehm@mgh.harvard.edu" . + . + "rna" . + . + "http://purl.org/spar/pwo/"^^ . + . + . + "http://purl.obolibrary.org/obo/MCO_"^^ . + . + "protein" . + . + . + . + . + "mouse" . + "MoleculeRole Ontology is an ontology for proteins/chemicals. It is used to annotate protein family names, generic/concrete protein names and chemical names in the INOH pathway data."^^ . + "knowledge and information systems" . + "false"^^ . + "The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with superfamily classification."^^ . + "embryonic stem cell line" . + . + "life science" . + . + "http://www.spbase.org/SpBase/search/viewAnnoGeneInfo.php?spu_id=$1"^^ . + . + "^[A-Za-z_0-9]+$"^^ . + . + "domain" . + "http://www.phosphosite.org/siteAction.do?id="^^ . + "bko" . + . + . + "https://fungidb.org/fungidb/app/record/gene/"^^ . + . + . + "JWS Online is a repository of curated biochemical pathway models, and additionally provides the ability to run simulations of these models in a web browser."^^ . + . + . + . + . + "meteorology" . + . + . + . + . + . + "The Therapeutic Target Database (TTD) is designed to provide information about the known therapeutic protein and nucleic acid targets described in the literature, the targeted disease conditions, the pathway information and the corresponding drugs/ligands directed at each of these targets. Cross-links to other databases are also introduced to facilitate the access of information about the sequence, 3D structure, function, nomenclature, drug/ligand binding properties, drug usage and effects, and related literature for each target."^^ . + . + . + . + . + "false"^^ . + . + . + "http://multicellds.org/MultiCellDB/"^^ . + "^\\d+$"^^ . + . + . + "^\\d{3}$"^^ . + . + "12"^^ . + . + . + "^\\d+$"^^ . + . + "false"^^ . + . + "LOC_Os01g49190.1"^^ . + . + . + . + "bbtp" . + . + . + . + . + "reproduction" . + "human genetics" . + "Alexander Diehl" . + "false"^^ . + "5601141"^^ . + "enzyme" . + . + "http://purl.org/spar/c4o/$1"^^ . + . + . + . + "genomics" . + . + . + . + . + . + "7123"^^ . + . + . + . + . + . + "bibliometrics" . + . + . + . + "An ontology describing phenomena encountered in the literature surrounding neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, Huntington's disease, tauopathies, and related protein aggregation diseases."^^ . + . + . + "false"^^ . + "false"^^ . + . + . + "0000002"^^ . + . + "false"^^ . + . + "CHEMBL3307800"^^ . + . + . + . + "protein" . + . + "0000255"^^ . + "http://purl.obolibrary.org/obo/HEPRO_$1"^^ . + . + "false"^^ . + . + . + "NCI Drug Dictionary ID" . + "98346"^^ . + . + . + . + "http://purl.obolibrary.org/obo/ATO_"^^ . + "schober@imbi.uni-freiburg.de" . + "ChemBank" . + . + . + "protein" . + "http://purl.obolibrary.org/obo/PO_$1"^^ . + "^[a-zA-Z0-9_\\-]+(/.*?)?$"^^ . + "biorxiv" . + . + . + "Metabolomics Workbench stores metabolomics data for small and large studies on cells, tissues and organisms for the Metabolomics Consortium Data Repository and Coordinating Center (DRCC)."^^ . + . + "4DN" . + "botany" . + . + . + . + . + . + . + . + "yeastintron" . + "^(\\w+(\\-\\w+)?(\\.\\w+)?)?\\d{4,7}(\\.\\d+(v\\d+)?)?$"^^ . + "BioCyc collection of metabolic pathway databases" . + . + . + . + "http://purl.obolibrary.org/obo/COLAO_"^^ . + . + . + . + . + . + . + "http://gmd.mpimp-golm.mpg.de/Analytes/$1"^^ . + . + . + "000140" . + "The Echinoderm Anatomy and Development Ontology" . + . + . + . + . + . + "d.a59037e8"^^ . + "http://www.cazy.org/$1.html"^^ . +_:N4cf661d3a80e4bc29af2d32f1413fc73 "usha@molecularconnections.com" . + "^\\d{7}$"^^ . + "false"^^ . + . + . + . + . + . + . + "true"^^ . + . + . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + "arrayexpress" . + "This collection is a subset of UniProtKB that provides a means to reference the proteolytic cleavage products of a precursor protein."^^ . + "obo" . + "InChI" . + . + _:Nd76b03d6e7bf479999c04bf3d1889fcd . + . + . + . + . + "ontology" . + "The European Environment Information and Observation Network (Eionet) is a partnership network of the European Environment Agency (EEA) and its 38 member and cooperating countries. The EEA is responsible for developing Eionet and coordinating its activities together with National Focal Points (NFPs) in the countries. This terminology supports those efforts."^^ . + . + "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1"^^ . + . + "EG10173"^^ . + . + . + . + "false"^^ . + "Universal Spectrum Identifier" . + . + . + "database" . + . + . + . + . + "^\\d+$"^^ . + . + . + "SwissLipids is a curated resource that provides information about known lipids, including lipid structure, metabolism, interactions, and subcellular and tissue localization. Information is curated from peer-reviewed literature and referenced using established ontologies, and provided with full provenance and evidence codes for curated assertions."^^ . + . + . + . + "false"^^ . + . + . + "upper-level ontology" . + . + . + . + . + . + "bioinformatics" . + . + . + "RHEA" . + . + "obo" . + . + "bibo" . + "alzforum.mutation" . + . + . + "life science" . + "false"^^ . + "model organism" . + . + . + "^rs[0-9]+$"^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + . + . + . + "protein" . + "0001056"^^ . + . + . + . + "ontology" . + . + . + "AT1402"^^ . + "false"^^ . + . + . + . + "false"^^ . + . + "systems biology" . + . + . + . + . + . + . + . + . + "wbphenotype" . + . + . + . + . + . + . + . + "ontology" . + "Description of a Project" . + "anatomy" . + "mapping_justification"^^ . + . + . + "ontology" . + "subtilist" . + . + . + . + "true"^^ . + . + "^\\d{7}$"^^ . + . + "^[0-9]+$"^^ . + . + . + "https://www.simolecule.com/cdkdepict/depict/bow/svg?smi=$1&zoom=2.0&annotate=cip"^^ . + . + . + . + "biomedical science" . + . + "AT1G01030.1"^^ . + . + . + "Sofia Robb" . + . + . + "TR0000001"^^ . + "STOREDB at University of Cambridge" . + . + "http://linkedlifedata.com/resource/umls/id/"^^ . + "uniprot.kw" . + "UniChem compound" . + . + . + "MIRBASEM" . + "cultured cell line" . + . + "https://www.ncbi.nlm.nih.gov/datasets/genome/"^^ . + "http://scop.berkeley.edu/sunid=$1"^^ . + . + . + . + . + . + . + . + . + . + "^\\d+$"^^ . + . + . + . + "Hans Ienasescu" . + . + . + "http://purl.obolibrary.org/obo/EHDA_"^^ . + . + . + . + . + . + "^M\\d{5}$"^^ . + "false"^^ . + . + "http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=$1"^^ . + . + "http://zinc15.docking.org/substances/$1"^^ . + "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID="^^ . + . + "data set" . + "cellular" . + . + . + . + "https://civicdb.org/links/gene/"^^ . + "http://www.pharmgkb.org/pathway/$1"^^ . + . + "A miscellaneous ontology of terms used for curation in FlyBase, including the DPO."^^ . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/SSTOSS/sstoss.cgi?code=$1"^^ . + . +_:N2370bb67565241488d5b2870551a9eb7 "Cynthia.Hake@cms.hhs.gov" . + "A structured controlled vocabulary for the anatomy of fungi."^^ . + "^\\d+$"^^ . + . + . + . + . + . + . + "^\\d+$"^^ . + "A Systematic Annotation Package for Community Analysis of Genomes" . + . + . + "false"^^ . + . + . + . + "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant."^^ . + "false"^^ . + "A comprehensive listing of post-transcriptionally modified nucleosides from RNA -"^^ . + . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "^[A-Za-z0-9-]+$"^^ . + . + . + "An identifier for a country in numeric format per ISO 3166-1"^^ . + "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode="^^ . + "agriculture" . + . + . + . + . + "Bernd Müller" . + "The human diseases in which proteins are involved are described in UniProtKB entries with a controlled vocabulary."^^ . + "Shape Expression Vocabulary" . + . + . + . + "^\\d{7}$"^^ . + . + "genomics" . + . + "structure" . + . + . + "^F\\d+$"^^ . + "ClinVar Submitter" . + "false"^^ . + . + "true"^^ . + . + . + . + "false"^^ . + . + "flopo" . + . + . + "BRIP1"^^ . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "https://uts.nlm.nih.gov/uts/umls/semantic-network/"^^ . + . + "false"^^ . + "LIPID_MAPS_instance" . + "data science" . + "^8\\d{4}$"^^ . + "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=$1"^^ . + "Scientific Evidence and Provenance Information Ontology" . + . + . + "A large RDF store built from American governmental data. This semantic space has a mixture of direct terms and subspaces."^^ . + . + "http://gmd.mpimp-golm.mpg.de/Analytes/"^^ . + . + "metanetx.compartment" . + "1"^^ . + . + "OSR00185W"^^ . + . . - "gene expression" . - "f.quaglia@ibiom.cnr.it" . - . - . - "KEGG Genes" . - . - . - "^P(X|R)D\\d{6}$"^^ . - . - . - "KEGG_DGROUP" . - . - . - . - "true"^^ . - "biosamples" . - . - . - . - "http://purl.obolibrary.org/obo/ICO_"^^ . - . - . - . + "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=$1"^^ . + "https://bioregistry.io/metaregistry/prefixcommons/$1"^^ . + . + . + . + "^\\d+$"^^ . + . + . + . + "http://www.ubio.org/browser/details.php?namebankID="^^ . + . + "An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens."^^ . + . + . + . + "life science" . + . + . + "genome" . + . + "Global Biodata Coalition - Global Core Biodata Resources" . + . + . + "^LTS\\d{7}$"^^ . + . + . + . + . + . + . + . + "Sergio José Rodríguez Méndez" . + "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions"^^ . + . + . + . + . + . . - . - "ontology" . - "classification" . - "pspub" . - "http://purl.obolibrary.org/obo/MIAPA_$1"^^ . - "true"^^ . - . - . - . - . - . - . - "false"^^ . - . - . - . - "false"^^ . - . - . - "deepak.unni3@gmail.com" . - . - . - . - . - . - . - . - "false"^^ . - . - "MarDB includes all sequenced marine microbial genomes regardless of level of completeness."^^ . - . - . - . - . - . - "https://www.ebi.ac.uk/metabolights/"^^ . - . - "A database for Triticeae and Avena gene symbols."^^ . - . - . - "^\\d+$"^^ . - . - "http://purl.obolibrary.org/obo/OBIB_$1"^^ . - "life science" . - . + . + "https://vocab.lternet.edu/vocab/vocab/index.php?tema="^^ . + "760050"^^ . + "Mutant Mouse Resource and Research Centers" . + "environmental science" . + "ATTC" . + . + "proteomics" . + "false"^^ . + . + . + . + . + "molecule" . + . + . + . + "URS0000759CF4"^^ . + . + . + "hms.lincs.dataset" . + . + . + . + . + "agriculture" . + . + "Pfam" . + "https://bioregistry.io/wikigenes:"^^ . + "Full implementation of the DRS 1.1 standard with support for persistent identifiers. Open source DRS server that follows the Gen3 implementation. Gen3 is a GA4GH compliant open source platform for developing framework services and data commons. Data commons accelerate and democratize the process of scientific discovery, especially over large or complex datasets. Gen3 is maintained by the Center for Translational Data Science at the University of Chicago. https://gen3.org"^^ . + "2008-005144-16"^^ . + . + . + . + . + "false"^^ . + "https://www.ncbi.nlm.nih.gov/nucleotide/"^^ . + . + . + . + . + . + "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=$1"^^ . + . + "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?prints_accn=$1&display_opts=Prints&category=None&queryform=false®expr=off"^^ . + . + . + . + "^\\d{7}$"^^ . + "phenotype" . + . + . + . + "^\\d{7}$"^^ . + . + . + "DSSTox_Generic_SID" . + "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster="^^ . + . + "confident.series" . + . + . + . + . + "phipo" . + . + . + . + . + "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=$1"^^ . + . + "EAWAG Biocatalysis/Biodegradation Database" . + "nlx.anat" . + . + . + . + "SD00043"^^ . + . + . + "Reaxys eMolecules" . + . + . + "The Rouge protein database contains results from sequence analysis of novel large (>4 kb) cDNAs identified in the Kazusa cDNA sequencing project."^^ . + . + "http://ecmdb.ca/compounds/$1"^^ . + . + . + . + "NCBI_taxid" . + . + . + . + . + . + "3hB06"^^ . + . + . + . + . + . + "omics" . +_:N28bf638d0ed04a62adc8f194345ca16b "WikiData Support" . + . + "https://www.ncbi.nlm.nih.gov/gene/"^^ . + . + "fao" . + . + "The PeptideAtlas Project provides a publicly accessible database of peptides identified in tandem mass spectrometry proteomics studies and software tools."^^ . + "Mark Gerstein" . + . + . + . + "SNOMED_CT_US_2018_03_01" . + "genomics" . + . + . + . + "interaction" . + . + . + "Biotin_biosynthesis"^^ . + "https://alfred.med.yale.edu/alfred/recordinfo.asp?UNID="^^ . + "A-GEOD-50"^^ . + "false"^^ . + "Sensitive Data Ontology" . + . + "mirex" . + . + . + "Database of Genomic Structural Variation - Study" . + . + "co_350" . + . + . + . + "http://purl.obolibrary.org/obo/FYPO_$1"^^ . + . + "https://bio.tools/$1"^^ . + . + "NIF Standard Ontology: Chemical" . + "^\\d{7}$"^^ . + . + . + . + "usageNote"^^ . + . + . + . + "HCPCS is a collection of standardized codes that represent medical procedures, supplies, products and services. The codes are used to facilitate the processing of health insurance claims by Medicare and other insurers."^^ . + . + . + "http://stitch.embl.de/interactions/$1"^^ . + . + "pesticides" . + . + . + "ontology" . + . + . + "false"^^ . + . + . + "http://www.drugtargetontology.org/dto/DTO_"^^ . + "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Phenotype."^^ . + . + . + "eSLDB is a database of protein subcellular localization annotation for eukaryotic organisms. It contains experimental annotations derived from primary protein databases, homology based annotations and computational predictions."^^ . + "https://lincs.hms.harvard.edu/db/sm/"^^ . + "ontology" . + . + "https://www.wormbase.org/db/seq/protein?name=$1"^^ . + . + "genome" . + . + . + "https://drs.microbiomedata.org/objects/"^^ . + . + . + . + . + "SABIO Reaction Kinetics" . + . + "false"^^ . + . + . + . + . + . + . + "pride.project" . + "biomedical science" . + . + "Morphological and physiological measurement records generated from clinical and model organism research and health programs."^^ . + . + . + . + . + "BioMagResBank" . + . + . + . + . + "graingenes.reference" . + . + "otol" . + . + . + "hpscreg" . + "Database of Complete Genome Homologous Genes Families" . + "stem cell" . + "interaction" . + "https://cropontology.org/rdf/CO_347:$1"^^ . + "https://www.uniprot.org/proteomes/$1"^^ . + . + . + "epcc" . + . + "false"^^ . + . + . + . + . + "The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism."^^ . + "^\\d+$"^^ . + "Intrinsically Disordered Proteins Ontology" . + . + . + "false"^^ . + . + . + . + "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=$1"^^ . + "genomics" . + . + "ccle.cell" . + "https://go.drugbank.com/reactions/"^^ . + "19210-3"^^ . + "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1&class=Locus"^^ . + . + . + "http://purl.obolibrary.org/obo/HsapDv_"^^ . + . + "developmental biology" . + . + . + . + . + "assetConcepts"^^ . + . + . + . + "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references yeast."^^ . + . + "SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling information published in the scientific literature."^^ . + "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information."^^ . + "false"^^ . + . + . + . + . + "603903"^^ . + . + "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders."^^ . + "^\\d{7}$"^^ . + . +_:N19a416df860e42448f691692a038666c "Onard Mejino" . + . + . + "RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping."^^ . + . + . + . + . + . + "obo" . + "OrthoDB" . + . + "Software Heritage is the universal archive of software source code."^^ . + . + . + "https://discover.pennsieve.io/package/"^^ . + "CIViC Disease" . + "structure" . + "sequence" . + . + . + "gainesville.core" . + . + . + . + . + . + "^[a-zA-Z0-9\\-:#/\\.]+$"^^ . + . + "One of the precursors to the EuropePMC project. Now EuropePMC is able to resolve CiteXplore codes."^^ . + . + "anatomy" . + . + . + . + . + . + "0107180"^^ . + "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database."^^ . + "https://www.ebi.ac.uk/chembl/compound/inspect/"^^ . + . + . + "biochemistry" . + "ecology" . + . + . + "000009"^^ . + . + "genome" . + . + . + "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code=$1"^^ . + "The MetNet database (MetNetDB) contains information on networks of metabolic and regulatory and interactions in Arabidopsis. Types of interactions in MetNetDB include transcription, translation, protein modification, assembly, allosteric regulation, translocation from one subcellular compartment to another."^^ . + "RNA Virus Database" . + . + . + . + "false"^^ . + . + "vhog" . + "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&field=ni&term="^^ . + . + "http://purl.obolibrary.org/obo/GEO_"^^ . + "http://bitterdb.agri.huji.ac.il/Receptor.php?id="^^ . + . + . + . + . + . + "nucleotide" . + . + . + . + "^\\d{7}$"^^ . + . + . + . + . + "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."^^ . + "HOMD Sequence Metainformation" . + . + . + . + "mathematics" . + . + . + "clustering" . + . + . + "000912"^^ . + . + . + . + "^\\d{7}$"^^ . + . + "dna" . + . + "ISfinder is a database of bacterial insertion sequences (IS). It assigns IS nomenclature and acts as a repository for ISs. Each IS is annotated with information such as the open reading frame DNA sequence, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography, where available."^^ . + . + "life science" . + . + . + "WikiPathways is a database of biological pathways maintained by and for the scientific community."^^ . + . + . + . + "C0026339"^^ . + . + "mgnify.samp" . + . + . + "Hathitrust is a partnership of academic and research institutions, offering a collection of millions of titles digitized from libraries around the world."^^ . + . + . + . + "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." . + "false"^^ . + . + . + . + "measurement" . + "BM0456"^^ . + . + "http://opm.phar.umich.edu/protein.php?pdbid="^^ . + . + "http://www.cellsignal.com/reference/pathway/$1.html"^^ . + . + "agsd" . + . + "false"^^ . + . + "http://purl.org/spar/c4o/"^^ . + "http://uri.neuinfo.org/nif/nifstd/nlx_cell_$1"^^ . + "pathway" . + . + "agriculture" . + "https://plants.ensembl.org/id/$1"^^ . + "CHEMBL3467"^^ . + . + . + . + . + . + "ontology" . + . + . + "nucleotide" . + "Metabolite and Tandem Mass Spectrometry Database" . + . + . + "http://multicellds.org/MultiCellDB/$1"^^ . + "http://ciliate.org/index.php/feature/details/"^^ . + "bgee.gene" . + . + . + . + "https://bioregistry.io/p3db.site:"^^ . + . + . + . + . + "http://purl.org/spar/doco/"^^ . + "doap" . + "genetics" . + "Redistributor of bilogics and biomedical supplies"^^ . + . + "false"^^ . + . + "organic chemistry" . + . + "structural biology" . + "reactions" . +_:N267f4cae13944491a75150835ad69478 "Josef Hardi" . + . + . + . + . + . + "https://www.ncbi.nlm.nih.gov/nucleotide/$1"^^ . + "mesh" . + . + . + . + "false"^^ . + . + " KEGG DGROUP contains structurally and functionally related groups of D number entries in KEGG DRUG. There are five types of drug groups.\n\n Chemical - grouped as identical chemical structures with minor variations of salts, hydration states, etc.\n Structure - grouped as similar chemical structures having the same skeleton, etc.\n Target - grouped by drug targets\n Class - drug classes often representing similar mechanisms of action\n Metabolism - grouped by substrates, inhibitors and inducers of drug metabolizing enzymes and transporters\n\nChemical groups are often used for identifying essentially the same active ingredients of drugs in different countries."^^ . + "phylomedb" . + . . - . - . - "10531"^^ . - . - "^\\d+\\-\\d+\\-\\d+$"^^ . - . - . - "https://civicdb.org/links/molecular_profile/"^^ . - "Rice annotation Project database" . - "Health Data Research Innovation Gateway" . - . - . - . - "^\\d{7}$"^^ . - "false"^^ . - "classification" . - "protein" . - . - . - "^[a-zA-Z0-9_\\.]+$"^^ . + . + "0000404"^^ . + . + "SPAR Ontologies" . + . + "Paolo Romano" . + . + . + "false"^^ . + "false"^^ . + . + "2555646"^^ . + . + . + "^\\d+$"^^ . + "rsk00410"^^ . + . + . + . + . + "The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional protein models, obtained by different structure prediction techniques."^^ . + . + . + . + "pharmacology" . + "http://www.begdb.com/index.php?action=oneMolecule&state=show&id=$1"^^ . + . + . + . + . + "biomedical science" . + "4349895"^^ . + . + . + . + . + . + . + . + . + "https://ssbd.riken.jp/database/dataset/"^^ . + "UCSC Genome Browser" . + "icdom:8500_3"^^ . + . + . + . + "http://purl.obolibrary.org/obo/SCDO_"^^ . + . + . + . + . + . + . + . + . + . + "The VirOligo database (1) is part of an effort to provide methods suitable for assessing what viruses are present in samples. Such methods should faciliate studies of the spatial and temporal distribution of viruses and their diversity at any one time and place."^^ . + . + . + "DrugBank Condition" . + . + . + . + "000000021"^^ . + . + "false"^^ . + . + "http://purl.obolibrary.org/obo/DDPHENO_$1"^^ . + . + . + "false"^^ . + "chemistry" . + . + . + . + . + . + "https://world-2dpage.expasy.org/repository/"^^ . + "141"^^ . + "false"^^ . + . + . + "B00162"^^ . + "http://www.gabipd.org/database/cgi-bin/GreenCards.pl.cgi?BioObjectId=$1&Mode=ShowBioObject"^^ . + "https://www.ebi.ac.uk/chembl/target/inspect/"^^ . + "ontology" . + . + "gene" . + "stem cell" . + "oridb.schizo" . + . + . + "robert.thacker@stonybrook.edu" . + "false"^^ . + . + . + . + . + . + . + . + . + . + "false"^^ . + "https://bioregistry.io/nsrrc:"^^ . + . + "^\\d{7}$"^^ . + . + "http://purl.obolibrary.org/obo/OGI_"^^ . + . + "obo" . + . + . + . + "innatedb" . + . + "mw.study" . + . + "false"^^ . + . + "false"^^ . + "neurobiology" . + . + "10046"^^ . + "A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics"^^ . + . + . + . + "nucleotide" . + . + . + "http://vegbank.org/cite/"^^ . + "ontology" . + . + . + . + . + . + "giardiadb" . + . + "0000189"^^ . + "An ARK resolver as well as resolver built with common prefixes as in Identifiers.org"^^ . + "Rfam database of RNA families" . + . + . + . + . + "IUPAC Gold Book Compendium of Chemical Terminology" . + "377550"^^ . + . + "experiment" . + . + "LBCTR2023015204"^^ . + . + "^MMP\\d+.\\d+$"^^ . + . + . + "https://www.worldcat.org/oclc/"^^ . + "zenodo.record" . + "AntWeb" . + "chemistry" . + . + . + "http://purl.obolibrary.org/obo/kestrelo_"^^ . + . + . + "^EBI\\-[0-9]+$"^^ . + . + . + "nextdb" . + . + "disease" . + "ontology" . + . + . + "life science" . + . + . + . + . + . + . + "false"^^ . + . + "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=$1"^^ . + "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules."^^ . + "The Cambridge Crystallographic Data Centre (CCDC) develops and maintains the Cambridge Stuctural Database, the world's most comprehensive archive of small-molecule crystal structure data. A CCDC Number is a unique identifier assigned to a dataset deposited with the CCDC."^^ . + "https://massbank.jp/RecordDisplay?id=$1"^^ . + . + "0001417"^^ . + . + "https://stemcells.nindsgenetics.org?line=$1"^^ . + "false"^^ . + "fsnp" . + "false"^^ . + "rdf" . + . + . + "IID00001"^^ . + "https://bacdive.dsmz.de/strain/$1"^^ . + . + "obo" . + "https://go.drugbank.com/bio_entities/$1"^^ . + . + . + . + . + . + . + "^bt\\d+$"^^ . + . + . + "Health Surveillance Ontology" . + . + . + "Human Dermatological Disease Ontology" . + "The primary purpose of ISO 15926 is to provide a foundation ontology to support the integration and sharing of data related to the lifecycle of a process plant in such a way that it is consistent, unambiguous, and minimizing the number of ways something could be expressed. Further purpose of ISO 15926-14 is to meet needs for OWL 2 ontologies that are based on ISO 15926-2, that enable efficient reasoning and that capture lifecycle information. A specific purpose is to demonstrate lifecycle modelling through a representation of the lifecycle model of ISO/IEC 81346-1. Another specific purpose is to exemplify how this standard can be used to develop industrial ontologies through various real-world use cases from industry. (from https://nfdi4cat.org/services/ontologie-sammlung/)"^^ . + . + . + "cheminformatics" . + "co_338" . + "RiceNetDB Compound" . + . + "RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, and Gold Standard Drug Database. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary."^^ . + . + . + . + "true"^^ . + . + "iNaturalist Observation" . + . + . + "A catalog of mouse genes expressed in early embryos, embryonic and adult stem cells, including 250000 ESTs, was assembled by the NIA (National Institute on Aging) assembled.This collection represents the name and sequence from individual cDNA clones."^^ . + . + . + "false"^^ . + . + . + "MIRIAM Registry collection" . + . + . + "dna" . + "false"^^ . + "Alejandra Gonzalez-Beltran" . + "runBioSimulations is a platform for sharing simulation experiments and their results. runBioSimulations enables investigators to use a wide range of simulation tools to execute a wide range of simulations. runBioSimulations permanently saves the results of these simulations, and investigators can share results by sharing URLs similar to sharing URLs for files with DropBox and Google Drive."^^ . + "Documentation of GO that provides a description of some of the commonly used relationships and conventions in GO."^^ . + "Lindsay.Cowell@utsouthwestern.edu" . + "https://www.storedb.org/?$1"^^ . + . + . + "https://www.kegg.jp/entry/$1"^^ . + "https://fairsharing.org/users/$1"^^ . + . +_:Ncb371b9251d84927994678e142aadc0e "NLM Customer Service" . + . + "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=$1"^^ . + "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=$1"^^ . + "http://purl.unep.org/sdg/SDGIO_$1"^^ . + "health science" . + "genome" . + . + . + . + "false"^^ . + "ontology" . + . + . + "http://aber-owl.net/ontology/$1/#/Browse/" . + . + . + "ForwardStrandPosition"^^ . + "Oryza Tag Line" . + . + . + "population genetics" . + . + . + . + "http://gpcr.biocomp.unibo.it/cgi-bin/predictors/esldb/dettagli.cgi?codice="^^ . + . + . + . + . + "BugBase Expt" . + "https://civicdb.org/links/drugs/"^^ . + "^\\d{7}$"^^ . + "Ontology of Vaccine Adverse Events" . + . + . + . + "HBG284870"^^ . + . + . + . + . + "MAM01234c"^^ . + . + "obo" . + . + "Soybean ontology" . + . + . + . + "genome" . + . + "https://icd.who.int/browse10/2019/en#/$1"^^ . + . + . + . + . + . + "SPCC13B11.01"^^ . + . + "R-BTA-418592"^^ . + "clinical LABoratory Ontology" . + . + . + . + "The GeneCards human gene database stores gene related transcriptomic, genetic, proteomic, functional and disease information. It uses standard nomenclature and approved gene symbols. GeneCards presents a complete summary for each human gene."^^ . + "^PTHR\\d{5}(\\:SF\\d{1,3})?$"^^ . + "http://europepmc.org/articles/"^^ . + "^r\\d+$"^^ . + . + . + "Supplier of mice for research purposes. [from RRID]"^^ . + . + "Global Research Identifier Database" . + "The State of Alaska's Salmon and People Ontology" . + . + "https://www.pirbright.ac.uk/node/"^^ . + "rna" . + . + . + "obo" . + . + . + . + . + . + . + . + . + . + . + "595"^^ . + . + "obo" . + "psdo" . + . + . + . + . + "false"^^ . + . + . + . + . + "beck@ncbi.nlm.nih.gov" . + . + . + . + . + "xuo" . + . + . + . + . + "isni" . + "^CHEMBL\\d+$"^^ . + "true"^^ . + "http://solgenomics.net/phenome/locus_display.pl?locus_id=$1"^^ . + . + . + "sweetrealm" . + "https://gitlab.com/"^^ . + . + . + "GRIN provides National Genetic Resources Program (NGRP) personnel and germplasm users continuous access to databases for the maintenance of passport, characterization, evaluation, inventory, and distribution data important for the effective management and utilization of national germplasm collections."^^ . + . + . + . + "ISO 15926-14" . + "sgd.pathways" . + "wormmart" . + . + . + . + . + "3851"^^ . + "publishing" . + "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs."^^ . + . + . + . + "bsweeney@ebi.ac.uk" . + . + . + "false"^^ . + . + . + "ontology" . + . + . + . + . + . + . + "creeas@gmail.com" . + . + . + "food chemistry" . + "Pennsieve" . + "000000001"^^ . + "peptideatlas" . + "false"^^ . + . + "cell biology" . + "CAA71118.1"^^ . + "rbo" . + . + "ecao" . + . + "false"^^ . + . + . + . + "The Sequencing Initiative Suomi (SISu) project is an international collaboration to harmonize and aggregate whole genome and exome sequence data from Finnish samples, providing data for researchers and clinicians. The SISu project allows for the search of variants to determine their attributes and occurrence in Finnish cohorts, and provides summary data on single nucleotide variants and indels from exomes, sequenced in disease-specific and population genetic studies."^^ . + . + . + "https://biopragmatics.github.io/providers/peff/$1"^^ . + . + . + . + . + "^MGYA\\d+$"^^ . + "2649230"^^ . + . + . + . + . + . + . + . + . + "rrid" . + . + . + "An ontology that enables the description of reviews of scientific articles and other scholarly resources."^^ . + . + "http://purl.obolibrary.org/obo/OARCS_$1"^^ . + "structure" . + . + "anatomy" . + "https://web.expasy.org/abcd/ABCD_$1"^^ . + "Bambara groundnut ontology" . + "metabolites" . + . + . + "^\\d{7}$"^^ . + "classification" . + . + "https://sitem.herts.ac.uk/aeru/ppdb/en/Reports/$1.htm"^^ . + . + "swo" . + . + . + . + "ontology" . + . + "https://omabrowser.org/oma/hog/HOG:$1"^^ . + . + . + "https://ximbio.com/reagent/$1"^^ . + . + "false"^^ . + . + . + "^\\d{7}$"^^ . + . + . + . + . + . + "^[A-Za-z0-9\\-\\_]+$"^^ . + . + "^[0-9]+$"^^ . + "The Molecular INTeraction database (MINT) stores, in a structured format, information about molecular interactions by extracting experimental details from work published in peer-reviewed journals."^^ . + . + "Cowpea ontology" . + "obo" . + . + . + . + . + "https://www.metanetx.org/comp_info/"^^ . + . + . + . + . + . + . + . + . + "swh" . + "^[a-zA-Z0-9 +#'*]+$"^^ . + . "National Microbial Pathogen Data Resource" . - . - . - . - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_"^^ . - "0000001"^^ . - . - . - "SNR17A"^^ . - . - " Hendrik Borgelt" . - . - . - . - . - . - . - . - . - . - "subject agnostic" . - . - . - . - . - . - . - . - . - . - "cellular neuroscience" . - . - . - . - "microarray" . + "Identifiers.org Registry" . + . + "obo" . + . + "false"^^ . + "daniel.gautheret@u-psud.fr" . + "https://www.genenames.org/cgi-bin/genefamilies/set/$1"^^ . + . + . + . + . + . + . + . + "ontology" . + "false"^^ . + "^\\d+$"^^ . + . + . + . + . + "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples."^^ . + "false"^^ . + . + "http://string.embl.de/interactions/$1"^^ . + . + "ontology" . + "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id="^^ . + "gene expression" . + "CryptoDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera."^^ . + . + . + . + . + . + . + "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$"^^ . + "epigenetics" . + . + . + . + "MarDB includes all sequenced marine microbial genomes regardless of level of completeness."^^ . + . + "genomics" . + . + "MimoDB is a database collecting peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, tissues and organs. It also stores other information such as the corresponding target, template, library, and structures. As of March 2016, this database was renamed Biopanning Data Bank."^^ . + "false"^^ . + . + "true"^^ . + . + . . - "Development Data Object Service" . - "obo" . - "Semantic Mapping Vocabulary" . - . - . - . - "pharmgkb.disease" . - . - . + "Protein covalent bond" . + . + "false"^^ . + . + . + "http://ctdbase.org/detail.go?type=chem&acc="^^ . + . + . + . + . + . + . + . + . + "HGVM15354"^^ . + . + "^(Q|P)\\d+$"^^ . + "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i="^^ . + . + . + . + "maize" . + "https://www.obofoundry.org/ontology/$1" . + "ncats.bioplanet" . + "nicolas.matentzoglu@gmail.com" . + . + "false"^^ . + . + "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid="^^ . + . + . + . + "ontology" . + . + "GeoNames" . + . + "0005250"^^ . + . + . + . + . + . + "timrobertson100@gmail.com" . + . + "^[A-Z]+[0-9]+$"^^ . + . + . + . + . + "rx00408"^^ . + . + "6038"^^ . + . + "^OSR\\d{4}$"^^ . + . + "W2741809807"^^ . + "helpdesk@cropontology-curationtool.org" . + . + "The Lebanese Clinical Trials Registry is an online register of clinical trials being undertaken in Lebanon. It includes trials that target humans from the full spectrum of therapeutic areas of pharmaceuticals, surgical procedures, preventive measures, lifestyle, devices, treatment and rehabilitation strategies and complementary therapies. (from homepage)"^^ . + . + "doi"^^ . + "A Locus Reference Genomic (LRG) is a manually curated record that contains stable genomic, transcript and protein reference sequences for reporting clinically relevant sequence variants. All LRGs are generated and maintained by the NCBI and EMBL-EBI."^^ . + . + "http://purl.obolibrary.org/obo/OMIABIS_$1"^^ . + . + "http://www.alanwood.net/pesticides/$1.html"^^ . + . + . + . + "FHIR External Terminologies" . + . + "lipidmaps" . + "obo" . + "https://gold.jgi.doe.gov/resolver?id="^^ . + . + "rna" . + . + . + "Broad Fungal Genome Initiative" . + . + . + . + "Japan Consortium for Glycobiology and Glycotechnology Database" . + "obo" . + . + "false"^^ . + "false"^^ . + . + . + "http://purl.org/pav/$1"^^ . + . + "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013."^^ . + . + "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid="^^ . + "Cluster of orthologous genes" . + . + . + "crisprdb" . + "https://bioregistry.io/combine.specifications:"^^ . + . + . + "ICD10CM" . + "RC00001"^^ . + "Identifier for a species in iNaturalist"^^ . + "informatics" . + "https://www.ncbi.nlm.nih.gov/protein/"^^ . + . + "Agronomy Ontology" . + "pmap.cutdb" . + "The Ecosystem Ontology" . + . + "vectorbase" . + "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references quantitative trait loci (qTLs), providing phenotype and disease descriptions, mapping, and strain information as well as links to markers and candidate genes."^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "Fission Yeast Experimental Conditions Ontology" . + . + . + . + . + "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=$1"^^ . + . + . + . + . + "ClinGen Allele Registry" . + . + "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#"^^ . + "http://scop.berkeley.edu/sunid="^^ . + "^[A-Za-z0-9]+$"^^ . + "RNAJunction is a database of RNA junctions and kissing loop structures. It contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. It allows searching by PDB code, structural classification, sequence, keyword or inter-helix angles. RNAJunction is designed to aid analysis of RNA structures as well as design of novel RNA structures on a nanoscale. "^^ . + "genome" . + . + . + . + . + "PTHR12345"^^ . + . + "WGS-95-1333"^^ . + "https://www.mlcommons.org/mlc-id/$1"^^ . + "olatdv" . + . + . + "Curated Drug-Drug Interactions Database - Interaction" . + . + "Organization" . + "population genetics" . + . + . + . + . + . + . + . + . + "0001191"^^ . + . + "^[A-Z-_0-9]+$"^^ . + . + "insdc.gcf" . + . + "https://www.beiresources.org/Catalog/cellBanks/$1.aspx"^^ . + . + "health science" . + . + . + . + . + "International Classification of Diseases, 10th Revision, Clinical Modification" . + "phosphopoint.protein" . + "false"^^ . + "http://viaf.org/viaf/"^^ . + . + . + . + . + . + . + . + . + "false"^^ . + . + . + . + "false"^^ . + . + . + "Pseudomonas Genome Database" . + . + . + . + . + "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp="^^ . + . + . + "48439"^^ . + . + . + . + . + . + . + . + "0011124"^^ . + . + "GOLD genome" . + . + . + . + . + . + . + "false"^^ . + . + . + "subject agnostic" . + . + . + . + . + "https://www.clinicaltrialsregister.eu/ctr-search/search?query="^^ . + "http://www.gramene.org/db/ontology/search?id=GRO:"^^ . + . + . + . + "GlycoNAVI" . + "fairsharing.organization" . + "CIViC Source" . + . + . + . + . + . + "^\\d{8}$"^^ . + "0000586"^^ . + "8000221"^^ . + . + "CHEBI"^^ . + "^\\d+$"^^ . + "EDAM Ontology" . + . + . + . + . + "Henning Hermjakob" . + "pco" . + . + . + . + . + "ecacc" . + "genome" . + "Human ancestry ontology for the NHGRI GWAS Catalog"^^ . + . + . + . + "http://biocyc.org/getid?id=$1"^^ . + . + "http://purl.obolibrary.org/obo/SO_"^^ . + "The global library cooperative OCLC maintains WorldCat. WorldCat is the world's largest network of library content and services. WorldCat libraries are dedicated to providing access to their resources on the Web, where most people start their search for information."^^ . + . + . + . + . + . + "HGNC Gene Group" . + . + . + . + . + . + . + "19-T4"^^ . + "An ontology of physico-chemical methods and properties."^^ . + "Sol Genomics Network" . + "http://xmlns.com/foaf/0.1/$1"^^ . + . + . + . + . + . + . + "drug discovery" . + . + "Cell line collections (Providers)"^^ . + "Ax1"^^ . + "mampol" . + "^\\d+$"^^ . + . + "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=$1"^^ . + "https://bioregistry.io/mirex:"^^ . + . + . + "tfclass" . + . + . + . + . + "natural science" . + "The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism."^^ . + "false"^^ . + "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:"^^ . + . + . + . + "A collaborative project intended to create an encyclopedia documenting all living species known to science"^^ . + "^[a-zA-Z0-9][A-Za-z0-9_]+$"^^ . + "Minimum PDDI Information Ontology" . + . + . + "genome" . + . + . + . + . + "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_"^^ . + . + . + . "miRNEST" . - . - "biodiversity" . - "http://cutdb.burnham.org/relation/show/"^^ . - . - "adenovirus" . - . - "eupath" . - . - . - "http://www.guidetopharmacology.org/GRAC/ObjectDisplayForward?objectId="^^ . - "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community."^^ . - . - "The Human Protein Atlas (HPA) is a publicly available database with high-resolution images showing the spatial distribution of proteins in different normal and cancer human cell lines. Primary access to this collection is through Ensembl Gene identifiers."^^ . - . - . - "ID in NIAID ChemDB"^^ . - . - . - . - "http://yeastrc.org/pdr/viewProtein.do?id=$1"^^ . - . - . - "https://www.biozol.de/en/product/$1"^^ . - "568815597"^^ . - . - "Complex Portal" . - "false"^^ . - . - . - . - . - . - "^\\d+$"^^ . - . - "http://www.wikipathways.org/instance/$1"^^ . - . - "http://purl.obolibrary.org/obo/COVIDO_"^^ . - . - . - . - . - "ricecyc" . - . - "go.gpi" . - "Melissa Haendel" . - . - "^[0-9]+$"^^ . - . - "ucas" . - "Lindsay Cowell" . - . - "ontology" . - "https://www.uniprot.org/arba/$1"^^ . - . - . - . - . - . - "Hs635"^^ . - . - "MarCat is a gene (protein) catalogue of uncultivable and cultivable marine genes and proteins derived from metagenomics samples."^^ . - . - . - . - "ecogene" . - "false"^^ . - . - "http://purl.org/spar/deo/"^^ . - . - . - . - . - "community care" . - . - . - . - . - "botany" . - "TFClass is a classification of eukaryotic transcription factors based on the characteristics of their DNA-binding domains. It comprises four general levels (superclass, class, family, subfamily) and two levels of instantiation (genus and molecular species). Two of them (subfamily and factor species) are optional. More detailed explanations about the classification scheme and its criteria are given here.."^^ . - . - "dna" . - "genomics" . - . - . - "false"^^ . - . - . - . - . - _:N6afd81d0b18c4d788763e7e1cf916125 . - . - "false"^^ . - "http://purl.obolibrary.org/obo/PSDO_"^^ . - "swiss-model" . - "pathway" . - . - . - . - "hölzel" . - . - . - "4685"^^ . - . - "semantic web" . - . - . - . - "0005147"^^ . - "Virtual International Authority File" . - "Human Gene Mutation Database" . - "0000001"^^ . - . - "AURKA"^^ . + . + "obo" . + . + "protein" . + . + "false"^^ . + . + . + "Multiple alignment" . + . + "PharmGKB" . + "SBGN Bricks data and ontology" . + . + . + "biology" . + . + "https://hl7.org/fhir/us/$1"^^ . + "The Astrophysics Source Code Library (ASCL) is a free online registry for software that have been used in research that has appeared in, or been submitted to, peer-reviewed publications. The ASCL is indexed by the SAO/NASA Astrophysics Data System (ADS) and Web of Science's Data Citation Index (WoS DCI), and is citable by using the unique ascl ID assigned to each code. The ascl ID can be used to link to the code entry by prefacing the number with ascl.net (i.e., ascl.net/1201.001)."^^ . + . + "^(((AC|AP|NC|NG|NM|NP|NR|NT|NW|WP|XM|XP|XR|YP|ZP)_\\d+)|(NZ_[A-Z]{2,4}\\d+))(\\.\\d+)?$"^^ . + "developmental biology" . + "^\\d{7}$"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "preclinical studies" . + . + . + "^[a-z]+/[0-9]+$"^^ . + "^ENSG\\d{11}$"^^ . + . + . + "systems biology" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "OBO Foundry" . + "^casent\\d+(\\-D\\d+)?$"^^ . + "The Cell Ontology is designed as a structured controlled vocabulary for cell types. The ontology was constructed for use by the model organism and other bioinformatics databases, incorporating cell types from prokaryotes to mammals, and includes plants and fungi."^^ . + . + . + . + "The Spectral Database for Organic Compounds (SDBS) is an integrated spectral database system for organic compounds. It provides access to 6 different types of spectra for each compound, including Mass spectrum (EI-MS), a Fourier transform infrared spectrum (FT-IR), and NMR spectra."^^ . + . + . + "^\\d{7}$"^^ . + "Traits and phenotypes of flowering plants occurring in digitized Floras"^^ . + . + "https://cropontology.org/rdf/CO_365:"^^ . + . + "clustering" . + "false"^^ . + "Transport Systems Tracker" . + "^[a-z0-9]{32,32}$"^^ . + . + . + . + . + . + . + . + "Registry of programming languages for the Linguist program for detecting and highlighting programming languages."^^ . + "https://civicdb.org/links/evidence/"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + "Basic Register of Thesauri, Ontologies & Classifications" . + . + "pubchem.compound" . + . + . + "lcnaf" . + . + . + . + "Biomedical Informatics Research Network Lexicon" . + "obo" . + . + "UPISO" . + "metabolomics" . + "BioTools" . + "mirbase.family" . + "Ontology for computer aided process engineering" . + "gene" . + "false"^^ . + "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession="^^ . + . + "http://www.peptideatlas.org/PASS/"^^ . + . + . + "asin" . + . + . + . + "http://www.informatics.jax.org/accession/MGI:"^^ . + "Bioregistry Collections" . + . + "OHPI is a biomedical ontology in the area of host-pathogen interactions. OHPI is developed by following the OBO Foundry Principles (e.g., openness and collaboration)."^^ . + . + . + . + . + . + "4623"^^ . + . + "roundworm" . + "Genomes Online Database" . + "social science" . + . + . + . + "^\\d+$"^^ . + "^\\d{7}$"^^ . + "false"^^ . + . + . + . + . + "BioContext" . + . + . + . + "^[A-Za-z0-9]+$"^^ . + "https://www.nsf.gov/awardsearch/showAward?AWD_ID="^^ . + . + . + . + . + "https://pb.apf.edu.au/phenbank/strain.html?id=$1"^^ . + . + . + . + . + . + . + "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . + . + . + . + "^\\d{6}$"^^ . + "false"^^ . + "^EGAD\\d{11}$"^^ . + . + "worm" . + . + . + . + . + "^Q[A-Z0-9]+$"^^ . + . + . + "Experimental data table management software to make research data accessible and available for reuse with minimal effort on the part of the data provider. Designed to manage experimental data tables in an easy way for users, ODAM provides a model for structuring both data and metadata that facilitates data handling and analysis. It also encourages data dissemination according to FAIR principles by making the data interoperable and reusable by both humans and machines, allowing the dataset to be explored and then extracted in whole or in part as needed."^^ . + "A database that describes manually curated macromolecular complexes and provides links to details about these complexes in other databases."^^ . + . + . + . + "https://flybase.org/reports/$1"^^ . + . + "drug" . + . + . + . + "^\\d+$"^^ . + "^.+$"^^ . + . + "Dongsheng Cao" . + . + . + . + . + "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. Nipponbare) insertion lines resulting in potential gene disruptions. It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information."^^ . + . + "bkc640"^^ . + . + . + "NONHSAG00001"^^ . + "Polymorphism and mutation databases"^^ . + "ontology" . + "Richard Cyganiak" . + . + . + . + . + "false"^^ . + . + "TVAG_386080"^^ . + . + "Veterinary Substances DataBase" . + . + . + . + . + . + . + "https://w3id.org/oc/meta/"^^ . + "small molecule" . + . + "http://uri.neuinfo.org/nif/nifstd/sao$1"^^ . + "xsd" . + . + "comparative genomics" . + . + . + "muamith@utmb.edu" . + "taxonomy" . + . + . + . + "http://purl.obolibrary.org/obo/PO_"^^ . + "matus.kalas@uib.no" . + . + "Vertebrate Genome Annotation Database" . + . + "Mondo Disease Ontology" . + . + "https://bioregistry.io/nbn:"^^ . + . + "false"^^ . + . + "OMA Group" . + . + . + "nlx.inv" . + "https://covid19.sfb.uit.no/api/records/"^^ . + . + . + "rcb" . + "MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations. "^^ . + . + . + . + "false"^^ . + "false"^^ . + . + . + "translational medicine" . + "false"^^ . + "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/$1"^^ . + . + . + . + . + "false"^^ . + . + . + "ken.sd.hsu@gmail.com" . + . + . + . + "Cell line collections (Providers)"^^ . + "false"^^ . + "enzyme" . + . + . + . + "bioinformatics" . + "Digital Object Identifier" . + . + . + . + . + . + . + . + "https://www.wormbase.org/species/c_elegans/rnai/"^^ . + "^OSC\\d{4}$"^^ . + "false"^^ . + "http://psb.kobic.re.kr/STAP/refinement1/result.php?search="^^ . + . + "reagent" . + . + "exo" . + . + . + . + . + . + . + . + "http://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code="^^ . + . + "life science" . + "A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research."^^ . + . + "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=$1"^^ . + . + "development" . + "https://cropontology.org/rdf/CO_321:"^^ . + . + . + . + "Uber Anatomy Ontology" . + . + . + . + . + . + . + . + "CellBank Australia" . + . + "Rice ontology" . + "https://web.expasy.org/cellosaurus/cellopub/"^^ . + "life science" . + . + "https://www.vmh.life/#reaction/"^^ . + . + . + . + . + . + "false"^^ . + "http://tumor.informatics.jax.org/mtbwi/strainDetails.do?key="^^ . + . + "dna" . + . + . + "life science" . + . + "^\\d{7}$"^^ . + "https://civicdb.org/links/variant_group/"^^ . + . + "false"^^ . + . + . + . + "Q5BJF6-3"^^ . + "A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum."^^ . + "Database for integrating species source of natural products & connecting natural products to biological targets via experimental-derived quantitative activity data.\n"^^ . + . + . + "CoVoc Coronavirus Vocabulary" . + "false"^^ . + . + . + . + . + . + . + "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML)."^^ . + . + . + . + . + "organic molecular chemistry" . + . + . + "http://www.jstor.org/stable/$1"^^ . + . + . + . + "NCITt" . + "https://bioregistry.io/spike.map:"^^ . + "life science" . + . + . + "SWISS-MODEL Repository" . + . + "MNXC15"^^ . + "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to genes in Gramene."^^ . + . + "^\\d{6}$"^^ . + "^\\d{7}$"^^ . + . + "1000160"^^ . + . + "Neuro Behavior Ontology" . + . + "https://signor.uniroma2.it/relation_result.php?id=$1"^^ . + "ontology" . + . + . + "pmid" . + "fcsfree" . + . + "ncbigene" . + "ICD9" . + . + . + . + . + . + . + . + "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$"^^ . + "app-d678n-tottori"^^ . + . + . + . + "SMP0000219"^^ . + . + "small molecule" . + "HMDB00001"^^ . + . + . + . + . + . + . + "RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases."^^ . + "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=$1"^^ . + . + . + . + . + . + . + . + . + . + . + . + . + . . - . - "^\\d{7}$"^^ . - . - . - . - "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references wild strain information."^^ . - . - . - . - . - "10046"^^ . - "false"^^ . - . - . - . - . - . - . - "rna" . - "Ontology of Physics for Biology" . - . - . - "Nanbyo Disease Ontology (NANDO) is the ontology creating a comprehensive hierarchical controlled vocabulary for intractable and rare disease (i.e., nanbyo) representation in Japan."^^ . - "PED00037"^^ . - "https://bioregistry.io/vdrc:"^^ . - "relationships" . - . - . - . - . - "true"^^ . - "biomedical science" . - . - "0000512"^^ . - . - . - "RF00230"^^ . - "ontology" . - "^spike\\d{5}$"^^ . - . - . - "https://vcell.org/biomodel-$1"^^ . - . - "https://www.genenames.org/cgi-bin/gene_symbol_report?match="^^ . - "scicrunch" . - . - . - . - "ontology" . - "botany" . - "Food-Drug interactions automatically extracted from scientific literature"^^ . - "gobpid" . - "false"^^ . - . - "^PA\\w+$"^^ . - "false"^^ . - "cell line" . - "false"^^ . - "Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in biobank. The ontology focuses on capturing the information about three main activities: wet bench analysis used to generate omics data, bioinformatics analysis used to analyze and interpret data, and data management."^^ . - . - "ontology" . - "obo" . - . - . - . - . - . - "https://hamap.expasy.org/unirule/$1"^^ . - "false"^^ . - . - . - . - "https://cellrepo.ico2s.org/repositories/$1"^^ . - "^\\d{7,}$"^^ . - . - "https://cropontology.org/rdf/CO_366:$1"^^ . - "36010371"^^ . - . - "nsf.award" . - . - . - . - "^\\d+$"^^ . - . - "botany" . - . - "proteomics" . - . - . - . - . - . - . - . - . - . + . + . + . + . + . + . + . + "obo" . + . + . + "https://thebiogrid.org/interaction/$1"^^ . + "0000890"^^ . + . + . + . + . + . + "false"^^ . + . + . + . + . + "small molecule" . + . + . + "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:$1"^^ . + . + . + "http://purl.obolibrary.org/obo/EPIO_$1"^^ . + . + "help-swissmodel@unibas.ch" . + . + . + . + "false"^^ . + . + "life science" . + . + . + "https://protists.ensembl.org/id/$1"^^ . + "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?$1"^^ . + "http://www.rnasoft.ca/sstrand/show_results.php?molecule_ID=$1"^^ . + . + "Terminology of Anatomy of Human Embryology" . + . + . + . + . + "false"^^ . + "false"^^ . + "piroplasma" . + "deo" . + . + . + _:N97fe579fac334c8ca90aeb591f335afa . + . + . + "http://purl.obolibrary.org/obo/HOM_"^^ . + . + . + . + "TGME49_053730"^^ . + . + . + . + . + . "PS" . - "ppr" . - "PseudoGene" . - . - "napdi" . - . - "structural bioinformatics" . - . - . - "structure" . - . - . - "^\\d+$"^^ . - . - "^\\w{1,2}\\d+$"^^ . - "false"^^ . - "http://modelseed.org/biochem/compounds/$1"^^ . - . - "FamPlex" . - . - . - . - "https://cropontology.org/rdf/CO_343:$1"^^ . - "HIX0004394"^^ . - . - . - . - . - "^[AEP]-\\w{4}-\\d+$"^^ . - . - . - "GWAS Central (previously the Human Genome Variation database of Genotype-to-Phenotype information) is a database of summary level findings from genetic association studies, both large and small. It gathers datasets from public domain projects, and accepts direct data submission. It is based upon Marker information encompassing SNP and variant information from public databases, to which allele and genotype frequency data, and genetic association findings are additionally added. A Study (most generic level) contains one or more Experiments, one or more Sample Panels of test subjects, and one or more Phenotypes. This collection references a GWAS Central Study."^^ . - "Curation of Neurodegeneration Supporting Ontology" . - . - . - . - "dna" . - . - "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules."^^ . - "Michael Witt" . - "The Comparative Toxicogenomics Database (CTD) presents scientifically reviewed and curated information on chemicals, relevant genes and proteins, and their interactions in vertebrates and invertebrates. It integrates sequence, reference, species, microarray, and general toxicology information to provide a unique centralized resource for toxicogenomic research. The database also provides visualization capabilities that enable cross-species comparisons of gene and protein sequences."^^ . - "hgnc.genegroup" . - . - "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:$1+cat:DBD"^^ . - . - "ACH-000001"^^ . - . - . - . - "false"^^ . - . - "omim" . - "KEGG Genome" . - "https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/$1.cmsx?closable=true"^^ . - "https://lotus.naturalproducts.net/compound/lotus_id/"^^ . - _:N8ef12b59b027479eb344e1d2a05132be . - "false"^^ . - . - . - . - . - . - "^\\w+\\_\\w+$"^^ . - "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene."^^ . - . - . - . - "oryzabase.gene" . - . - . - "Drug Target Ontology" . - . - . - "emea" . - . - . - "The Ontology for Biobanking (OBIB) is an ontology for the annotation and modeling of the activities, contents, and administration of a biobank. Biobanks are facilities that store specimens, such as bodily fluids and tissues, typically along with specimen annotation and clinical data. OBIB is based on a subset of the Ontology for Biomedical Investigation (OBI), has the Basic Formal Ontology (BFO) as its upper ontology, and is developed following OBO Foundry principles. The first version of OBIB resulted from the merging of two existing biobank-related ontologies, OMIABIS and biobank ontology."^^ . - . - "Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes."^^ . - . - . - . - . - "http://geneontology.org/docs/gene-product-information-gpi-format/#"^^ . - . - "^SCV\\d+(\\.\\d+)?$"^^ . - . - . - . - "https://spdx.org/licenses/$1"^^ . - "https://www.wormbase.org/db/seq/protein?name=$1"^^ . - . - . - "ontology" . - . - . - . - . - "DSSTox_CID" . - . - "An ontology covering the taxonomy of teleosts (bony fish)"^^ . - . - . - . - "false"^^ . - "computational chemistry" . - . - "^\\d{7}$"^^ . - "An ontology for harmonizing and extending severeral existing resources in the vaccine and immunology domains"^^ . - "Units of measurement ontology" . - . - . - "http://bcrj.org.br/celula/"^^ . - . - "false"^^ . - "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$"^^ . - "false"^^ . - "http://www.pharmgkb.org/pathway/$1"^^ . - . - . - "109082"^^ . - . - . - "http://data.food.gov.uk/codes/foodtype/id/"^^ . + "^T\\d{3}$"^^ . + "false"^^ . + "https://www.ebi.ac.uk/intact/search?query=$1"^^ . + . + "FBdv" . + . . - "nucleotide" . - "https://portal.gdc.cancer.gov/cases/$1"^^ . - . - "small molecule" . - . - "HL7 External Code Systems" . - . - . - . - . - . - "cmecs" . - . - "ardb" . - "^\\d+$"^^ . - "ZFA description."^^ . - . - . - . - "chemistry" . - . - . - . - . - . - "false"^^ . - . - "TarBase stores microRNA (miRNA) information for miRNA–gene interactions, as well as miRNA- and gene-related facts to information specific to the interaction and the experimental validation methodologies used."^^ . - "OriDB is a database of collated genome-wide mapping studies of confirmed and predicted replication origin sites in Saccharomyces cerevisiae and the fission yeast Schizosaccharomyces pombe. This collection references Saccharomyces cerevisiae."^^ . - . - . - . - . - . - . - "false"^^ . - "ontology" . - "The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to pathway information."^^ . - . - "false"^^ . - "https://registry.bio2kg.org" . - . - "vasilevs@ohsu.edu" . - "Cell Line Ontology" . - "biomedical science" . - . - . -_:N7ba3234bbb0040258a3439900b0e2440 "helpdesk@cropontology-curationtool.org" . - . - . - . - . - . - "mirte" . - "nif_subcellular" . - "false"^^ . - "This collection contains various brain atlases from the Allen Institute." . - . - . - . - . - . - . - "gene prediction" . - . - . - . - . - . - . - "EV_0100011"^^ . - "https://mged.sourceforge.net/ontologies/MGEDontology.php#$1"^^ . - "false"^^ . - "^\\d{7}$"^^ . - . - . - "International Molecular Exchange" . - "KEGG reaction contains our knowledge on the universe of reactions that are relevant to life."^^ . - "Workspace (Git repository) for modeling projects managed by the Physiome Model Repository"^^ . - "obo" . - "Dimension"^^ . - "BioGRID is a database of physical and genetic interactions in Saccharomyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens, and Schizosaccharomyces pombe."^^ . - "life science" . - . - "https://dataguids.org/ga4gh/dos/v1/dataobjects/$1"^^ . - . - "pgs" . - . - . - "Chemical Entity Materials and Reactions Ontological Framework" . - "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_"^^ . - "vertebrate" . - . - . - . - . - "matus.kalas@uib.no" . - . - "CropMRespository is a database of soil and crop biophysical process models."^^ . - "neXtProt family" . - "Global LEI Index" . - "time" . - "0005067"^^ . - . - . - . - . - "ali.syed@kaust.edu.sa" . - . - . - "Sheeba Samuel" . - . - . - "gene" . - "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references drug information."^^ . - "https://www.checklistbank.org/dataset/"^^ . - "genedb" . - . - . + . + . + "http://purl.obolibrary.org/obo/ONTOAVIDA_"^^ . + . + . + . + . + "PomBase" . + "biology" . + . + "LINCS Small Molecule" . + . + . + . + "ontology" . + "dictyBase Expressed Sequence Tag" . + . + . + . + . + . + "biozil" . + . + . + "mihail.anton@chalmers.se" . + "0007133"^^ . + . + "DOOR (Database for prOkaryotic OpeRons) contains computationally predicted operons of all the sequenced prokaryotic genomes. It includes operons for RNA genes."^^ . + . + "biology" . + "small molecule" . + . + "https://www.cbioportal.org/study/summary?id=$1"^^ . + . + . + "https://proteinensemble.org/$1"^^ . + "false"^^ . + "go.gpi" . + . + . + "^SKIP\\d+$"^^ . + . + . + . + . + . + . + . + . + . + "http://www.ebi.ac.uk/efo/EFO_$1"^^ . + . + . + . + . + "biolegend" . + "helpdesk@cropontology-curationtool.org" . + . + . + . + . + . + . + . + . + "^[1-6]\\.[0-9]+\\.[0-9]+\\.[0-9]+$"^^ . + "IPI00000001"^^ . + . + . + "false"^^ . + "The Drug Ontology" . + "global health" . + "false"^^ . + "Antimicrobial Peptide Database" . + . + "pibase" . + . + . + . + . + . + "http://uri.neuinfo.org/nif/nifstd/nifext_$1"^^ . + "biomedical science" . +_:Nbd3b87c19aed4ac69586246a536ac439 "Pierre Sprumont" . + "Shapes Constraint Language" . + "^[0-9]{8}$"^^ . + "FlowRepository is a database of flow cytometry experiments where you can query and download data collected and annotated according to the MIFlowCyt standard. It is primarily used as a data deposition place for experimental findings published in peer-reviewed journals in the flow cytometry field."^^ . + . + . + . + . + "aap-1"^^ . + "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-$1"^^ . + "6017782"^^ . + . + . + . + "^\\d+$"^^ . + "17254"^^ . + . + "natural history" . + . + . + . + "Vendor for assays, cells, and antibodies"^^ . + . + . + "environmental science" . + "^\\d+$"^^ . + "false"^^ . + . + . + . + "imanis" . + "protein" . + . + . + . + . + . . - . - . - . - "anatomy" . - . - . - . - . - "^\\d+$"^^ . - "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"^^ . - "sepio" . - . - "0000070"^^ . - . - . - . - . - . - . - . - "The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all."^^ . - "Small Angle Scattering Biological Data Bank" . - . - . - . - . - . - "proteomics" . - "^RPCEC\\d+$"^^ . - . - . - "PWY-1042"^^ . - . - "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:$1"^^ . - . - . - . - . - . - . - . - . - . - . - . - "207LH0002X"^^ . - . - . - . - "^EBI\\-[0-9]+$"^^ . - . - . - "Sebastien Moretti" . - . - . - "^PD\\d{6}$"^^ . - . - . - . - . - "false"^^ . - . - "FAIRsharing User" . - . - . - "https://www.sigmaaldrich.com/US/en/product/sigma/$1"^^ . - "^[0-9]+$"^^ . - "schemaorg" . - . - "1829126"^^ . - . - . - . - . - . - "https://goldbook.iupac.org/terms/view/"^^ . - "false"^^ . - . - . - "false"^^ . - . - "http://scicrunch.org/resolver/SCR_$1"^^ . - . - . - . - . - . - "^[A-Z]{2}\\d+$"^^ . - "ontology" . - "145"^^ . - . - "ydpm" . - "TTD Target" . - . - . - . - "proteomics" . - "amoebadb" . - . - . - . - "http://purl.obolibrary.org/obo/OMRSE_$1"^^ . - . - "alistair.miles@linacre.ox.ac.uk" . - . - . - "false"^^ . - . - . - . - . - "mirbase" . - . - . - . - "https://fairsharing.org/"^^ . - . - "bspo" . - . - . - . - . - "MI0026471"^^ . - . - . - . - . - "^[0-9][A-Za-z0-9]{3}$"^^ . - . - "db-object-id"^^ . - . - . - . - . - . - "Drosophila RNAi Screening Center" . - "System Science of Biological Dynamics dataset" . - . - "false"^^ . - . - . - . - . - . - . - . - "protein" . - "http://sideeffects.embl.de/drugs/$1"^^ . - . - "cardiology" . - . - "true"^^ . - "Draft version"^^ . - . - "Brassica Trait Ontology (BRaTO) hosts trait information to describe brassica crop data. Terms are collected from various projects including OREGIN, RIPR (UK) and Rapsodyn (France). BRATO development is conducted by Earlham Institute (UK), Southern Cross University (Australia) and INRA (France)."^^ . - . - . - . - "false"^^ . - . - . - . - "https://civicdb.org/links/diseases/$1"^^ . - . - . - "http://www.conoserver.org/?page=card&table=protein&id=$1"^^ . - "^\\d+$"^^ . - "life science" . - . - . - "^[0-9]{15}[0-9X]{1}$"^^ . - . - . - . - "^001\\d{5}$"^^ . - . - "obo" . + . + . + "https://hpscreg.eu/cell-line/"^^ . + . + . + . + . + . + . + . + "PR" . + . + . + . + . + . + "SNOMED_CT" . + "obo" . + "false"^^ . + . + "gene" . + . + . + . + . + "sequence" . + . + "protein" . + . + "apd" . + "biomedical science" . + "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession="^^ . + "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/$1"^^ . + . + . + "data integration" . + "UMLS Semantic Types Ontology" . + "YBR125c"^^ . + . + "https://bioregistry.io/metaregistry/cellosaurus/"^^ . + "false"^^ . + "^[A-Za-z0-9\\-\\/]+$"^^ . + "'ocid' stands for \"Ontology Concept Identifiers\" and are 12 digit long integers covering IDs in topical ontologies from anatomy up to toxicology."^^ . + . + . + "dna" . + . + "A vocabulary for representing latitude, longitude and altitude information in the WGS84 geodetic reference datum"^^ . + . + . + . + "metabolite" . + . + "mjyoder@illinois.edu" . + "0002502"^^ . + "life science" . + . + . + . + . + . + . + "ICEberg integrative and conjugative element" . + . + "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/"^^ . + . . - . - . - "false"^^ . - "biomedical science" . - . - . - . - . - . - "mathias.uhlen@scilifelab.se" . - . - . - . - . - "ddpheno" . - . - . - "Kerafast cell lines" . - . - . - . - . - "GeoNames Feature Code" . - . - "ovae" . - . - . - . - . - "medicine" . - "Gramene protein" . - . - . - "life science" . - . - "Ontology of Genetic Susceptibility Factor" . - . - . - . - "http://www.genome.jp/kegg-bin/get_htext?-p+/kegg/brite/br+br$1"^^ . - . - . - . - "G00123"^^ . - . - . - . - . - "^\\d{7}$"^^ . - . - . - . - . - "genome" . - . - . - "http://genecards.weizmann.ac.il/geneloc-bin/marker_cards.pl?id="^^ . - . - . - . - "false"^^ . - . - . - "https://www.ribocentre.org/docs/$1"^^ . - "11"^^ . - "ontology" . - "^rs[0-9]+$"^^ . - . - . - "http://vocab.getty.edu/page/tgn/$1"^^ . - "UM-BBD_pathwayID" . - . - "false"^^ . - . - "classification" . - . - . - . - "^\\d{5,}$"^^ . - . - . - . - . - . - . - "^\\d+$"^^ . - . - "false"^^ . - "^[0-9A-Za-z\\-.]+$"^^ . - . - . - "Variation Modelling Collaboration" . - . - . - "Elementary Multiperspective Material Ontology" . + . + "Mike Tyers" . + . + . + "Database of biopesticides maintained by the University of Hertfordshire "^^ . + . + . + . + . + "false"^^ . + "^[1-9][0-9]{3,6}$"^^ . + . + . + . + "Chemical Entity Materials and Reactions Ontological Framework" . + . + . + . + "false"^^ . + "http://www.conoserver.org/?page=card&table=protein&id="^^ . + . + . + "^NBK\\d+$"^^ . + . + "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$"^^ . + "hoelzel" . + "https://bioregistry.io/cst:"^^ . + . + . + "stefanie.seltmann@ibmt.fraunhofer.de" . + . + _:N5f89f946900e4eebb0589865b407f817 . + . + . + . + "https://bioregistry.io/wicell:"^^ . + . + . + "jcggdb" . + . + "http://purl.bioontology.org/NEMO/ontology/NEMO.owl#NEMO_$1"^^ . + . + "Leigh.Carmody@jax.org" . + . + . + . + . + "00073"^^ . + . + . + . + . + . + . + . + "molecular infection biology" . + "http://antirrhinum.net/cgi-bin/ace/generic/tree/DragonDB?name=$1;class=Peptide"^^ . + "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)"^^ . + "Ligand-Gated Ion Channel database" . + . + "http://metlin.scripps.edu/metabo_info.php?molid=$1"^^ . + "epidemiology" . + . + "https://www.isrctn.com/$1"^^ . + "phenomics" . + "An ontology to represent medically relevant actions, procedures, therapies, interventions, and recommendations."^^ . + . + "https://cropontology.org/rdf/CO_324:"^^ . + . + . + "^\\d{7}$"^^ . + . + "kegg_genome" . + . + . + . + . + "Zebrafish anatomy and development ontology" . + . + . + "101775319"^^ . + "cell line" . + . + "biology" . + "Yeast Deletion and the Mitochondrial Proteomics Project" . + . + "T30002"^^ . + "Maria Gould" . + . + "http://caps.ncbs.res.in/cgi-bin/mini/databases/imotdb/imotdb.cgi?sfcode=$1"^^ . + . + . + . + . + "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=$1"^^ . + . + . + "Drosophila Genomics Resource Center" . + . + . + . + . + "false"^^ . + . + "Cell line collections (Providers)"^^ . + . + . + "Marie-Angélique Laporte" . + "dsm-iv" . + . + "Information for ligands in the BRENDA database."^^ . + "The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. " . + . + . + . + . + . + "subject agnostic" . + "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID="^^ . + . + "biomedical science" . + "https://www.langual.org/langual_thesaurus.asp?termid="^^ . + . + "labo" . + . + "metascience" . + "aao" . + . + . + "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/$1"^^ . + "ordb" . + . + "^\\d{7}$"^^ . + . + "obo" . + "PXD000440"^^ . + "aaeA"^^ . + "The Global Proteome Machine Database was constructed to utilize the information obtained by GPM servers to aid in the difficult process of validating peptide MS/MS spectra as well as protein coverage patterns."^^ . + "^[A-Z0-9]+$"^^ . + . + . + "^\\d+$"^^ . + . + . + . + . + _:N3d1b2d44321449298ccf2afdf5ddcbea . + "O80725"^^ . + . + . + "^\\d{7}$"^^ . + "https://loinc.org/$1"^^ . + . + "false"^^ . + . + "obo" . + . + "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=$1"^^ . + "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=$1"^^ . + . + "VMH reaction" . + "Ontology of Adverse Events" . + . + "virology" . + "opb" . + "https://bioregistry.io/polbase:"^^ . + "Homeodomain Research" . + . + "https://europepmc.org/article/CBA/"^^ . + "biology" . + . + . + . . - . - . - "false"^^ . - "https://mged.sourceforge.net/ontologies/MGEDontology.php#"^^ . - . - "001"^^ . - . - . - "remote sensing" . - "false"^^ . - . - "false"^^ . - . - . - . - "https://zenodo.org/record/"^^ . - "SNOMEDCT_US_2021_07_31" . - "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=$1"^^ . - . - "life science" . - . - "^\\d+$"^^ . - . - . - . - . - . - . - . - . - . - . - . - "https://www.ncbi.nlm.nih.gov/datasets/genome/$1"^^ . - "hogenom" . + "554"^^ . + . + "https://ensaiosclinicos.gov.br/rg/$1"^^ . + "^\\w+\\d+$"^^ . + . + . + . + . + "faseb list" . + . + . + "0020"^^ . + . + "International Classification of Functioning, Disability and Health" . + . + "false"^^ . + . + . + "false"^^ . + . + . + . + . + . + "Neural ElectroMagnetic Ontology" . + "http://purl.obolibrary.org/obo/CHEBI_"^^ . + . + . + . + "00103"^^ . + . + "3dmet" . + . + "LINCS Data" . + "^[A-Za-z_0-9]+$"^^ . + . + . + . + . + . + "false"^^ . + . + "European Genome-phenome Archive Dataset" . + . + . + "Philippe Rocca-Serra" . + . + . + . + . +_:Nf56ce5accf304c63a0b83fc5a0e113c4 "NLM Customer Service" . + . + "https://scicrunch.org/resolver/RRID:NXR_$1"^^ . + . + "^\\d{1,7}$"^^ . + "^IHW\\d+$"^^ . + "Contributor Role Ontology" . + "medicine" . + "skos" . + . + . + . + . + . + "https://www.proteomicsdb.org/#human/proteinDetails/$1"^^ . + "rat model" . + . + . + . + . + . + . + . + . + . + "mop" . + . + . + "This cooperative effort, which includes Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the University of Chicago, focuses on the development of the comparative genomics environment called the SEED. It is a framework to support comparative analysis and annotation of genomes, and the development of curated genomic data (annotation). Curation is performed at the level of subsystems by an expert annotator, across many genomes, and not on a gene by gene basis. This collection references subsystems."^^ . + . + . + . + "^\\d{8}$"^^ . + . + "https://www.kegg.jp/entry/$1"^^ . + . + . + "https://agricola.nal.usda.gov/vwebv/holdingsInfo?bibId=$1"^^ . + . + "oryzabase.gene" . + "cath.superfamily" . + . + "ontology" . + . + "http://bacmap.wishartlab.com/maps/$1/index.html"^^ . + . + "false"^^ . + . + . + "The dictyBase database provides data on the model organism Dictyostelium discoideum and related species. It contains the complete genome sequence, ESTs, gene models and functional annotations. This collection references gene information."^^ . + . + "false"^^ . + . + . + . + . + . + . + . + . + . + . + "obo" . + . + "Drosophila RNAi Screening Center" . + "1968"^^ . + . + . + . + . + "http://www.wikipathways.org/instance/$1"^^ . + . + "false"^^ . + . + . + "relationships" . + "Jacqueline Campbell" . + . + . + "https://nmrshiftdb.nmr.uni-koeln.de/molecule/"^^ . . - . - . - . - . - "https://biopragmatics.github.io/debio/"^^ . - . - . - . - . - . - "The Protein Data Bank is the single worldwide archive of structural data of biological macromolecules. This collection references ligands."^^ . - "true"^^ . - "A curated, informative and educational resource on data and metadata standards, inter-related to databases and data policies." . - . - . - "false"^^ . - . - . - "health science" . - . - . - . - "false"^^ . - "Web-application assembling the largest in vitro drug screens in a single database, and allowing users to easily query the union of studies released to date. Query by dataset."^^ . - "Open Researcher and Contributor" . - "https://go.drugbank.com/indications/$1"^^ . - . - "gene" . - . - "Subcellular Anatomy Ontology" . - . - "protein" . - . - . - . + "wgs84" . + "bioinformatics" . + . + . + "false"^^ . + . + . + "obo" . + "false"^^ . + . + "dg.anv0" . + . + . + . + "http://purl.obolibrary.org/obo/GAZ_$1"^^ . + . + "1018"^^ . + . + . + "Internal identifiers form the LSP for ChEBML compound classes (e.g., combining various salts and ions)"^^ . + "https://web-ast.dsi.cnrs.fr/l3c/owa/structure.infos_admin?&p_lab=$1&p_origine_appel=u"^^ . + "HWUPKR0MPOU8FGXBT394"^^ . + . + . + "biology" . + . + "Thorsten Henrich" . + . + . + . + . + . + . + "008893080"^^ . + "false"^^ . + "Chicken Gene Nomenclature Consortium" . + . + . + "HMS Library of Integrated Network-based Cellular Signatures Datasets" . + . + . + "computational neuroscience" . + . + . + . + . + "drugbank" . + . + . + "CORDIS Project" . + "9-1-1 Complex"^^ . + . + "https://cropontology.org/rdf/CO_343:"^^ . + . + . + . + . + "chemistry" . + . + "An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes."^^ . + "snctp" . + "dictyBase" . + . + "This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations."^^ . + "http://purl.obolibrary.org/obo/PCO_$1"^^ . + "http://drugcentral.org/drugcard/"^^ . + . + . + "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#"^^ . + . + . + . + "http://www.radiomics.org/RO/$1"^^ . + . + . + . + . + . + . + "icd10" . + "publishing" . + "MIRIAM Registry is an online resource created to catalogue collections (Gene Ontology, Taxonomy or PubMed are some examples) and the corresponding resources (physical locations) providing access to those data collections. The Registry provides unique and perennial URIs for each entity of those data collections."^^ . + "MetaNetX chemical" . + . + . + . + . + "https://bioregistry.io/bmrb:"^^ . + . + "phylogenetics" . + . + "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id=$1"^^ . + "https://www.brenda-enzymes.de/ligand.php?brenda_ligand_id="^^ . + . + "molmovdb" . + "KEGG.DRUG" . + "dideo" . + . + . + . + . + . + . + . + "false"^^ . + . + "http://www.w3.org/ns/shex#$1"^^ . + . + . + . + "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_"^^ . + "https://world-2dpage.expasy.org/repository/$1"^^ . + . + . + "http://func.mshri.on.ca/human/genes/list_functional_scores/"^^ . + . + . + "medicine" . + . + . + . + . + . + . + "http://purl.obolibrary.org/obo/ECO_$1"^^ . + . + . + "Mouse Developmental Anatomy Ontology with Theiler Stage" . + . + "SNP500Cancer" . + "UniProt provides proteome sets of proteins whose genomes have been completely sequenced."^^ . + . + . + . + . + "zachll@umich.edu" . + "https://w3id.org/seo#$1"^^ . + . + . + . + "gitlab" . + "false"^^ . + . + "0000066"^^ . + . + "false"^^ . + . + "An ontology that permits the number of in-text citations of a cited source to be recorded, together with their textual citation contexts, along with the number of citations a cited entity has received globally on a particular date."^^ . + . + . + . + . + . + "true"^^ . + . + . + "animal husbandry" . + "false"^^ . + "protein" . + . + "computational biology" . + "Matthias König" . + . + . + . + "NHMRC Australian PhenomeBank" . + "true"^^ . + . + "https://bioportal.bioontology.org/ontologies/WIKIPATHWAYS/?p=classes&conceptid=http%3A%2F%2Fvocabularies.wikipathways.org%2Fwp%23"^^ . + "false"^^ . + . + "ncbi.gi" . + "rtecs" . + "DDB_G0267522"^^ . + . + "4"^^ . + "genome" . + "https://amzn.com/$1"^^ . + "pylebail@rennes.inra.fr" . + "chemistry" . + . + . + . + "phenomics" . + "^\\d{7}$"^^ . + "http://ontology.apa.org/apaonto/termsonlyOUT%20(5).owl#$1"^^ . + "http://edamontology.org/topic_"^^ . + . + . + . + . + "https://www.ebi.ac.uk/interpro/entry/pfam/"^^ . + "ontology" . + . + . + . + "https://permalink.obvsg.at/"^^ . + . + "false"^^ . + . + "http://neuromorpho.org/neuron_info.jsp?neuron_name="^^ . + . + . + . + "computer science" . + "ChemIDplus" . + "^[a-z]+(\\-[a-z]+)*$"^^ . + . + "^[a-z_A-Z0-9]+$"^^ . + . + . + . + "genome" . + . + "wosuid" . + . + . + . + . + . + "Database of homology-derived secondary structure of proteins" . + . + . + "^AS\\d{6}$"^^ . + . + . + "http://www.pharmgkb.org/pathway/"^^ . + "pandey@jhmi.edu" . + . + "https://metazoa.ensembl.org/id/$1"^^ . diff --git a/exports/rdf/bioregistry.ttl b/exports/rdf/bioregistry.ttl index e7f7f6e7e..5841814f7 100644 --- a/exports/rdf/bioregistry.ttl +++ b/exports/rdf/bioregistry.ttl @@ -319,8 +319,8 @@ @prefix dbvar.variant: . @prefix dc: . @prefix dcat: . +@prefix dcmitype: . @prefix dcterms: . -@prefix dctypes: . @prefix ddanat: . @prefix ddinter.drug: . @prefix ddinter.interaction: . @@ -869,6 +869,7 @@ @prefix ncbi.resource: . @prefix ncbi.resource1: . @prefix ncbibook: . +@prefix ncbidrs: . @prefix ncbigene: . @prefix ncbigi: . @prefix ncbitaxon: . @@ -13265,6 +13266,20 @@ bioregistry:nbrc a bioregistry.schema:0000001 ; bioregistry.schema:0000027 nbrc:00001234 ; bioregistry.schema:0000029 "nbrc" . +bioregistry:ncbidrs a bioregistry.schema:0000001 ; + rdfs:label "NCBI Data Repository Service" ; + dcterms:description "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. "^^xsd:string ; + dcterms:isPartOf bioregistry.metaresource:bioregistry ; + skos:exactMatch miriam:ncbidrs ; + foaf:homepage ; + bioregistry.schema:0000005 "72ff6ff882ec447f12df018e6183de59"^^xsd:string ; + bioregistry.schema:0000006 "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1"^^xsd:string ; + bioregistry.schema:0000008 "^[0-9a-fA-F]{32}$"^^xsd:string ; + bioregistry.schema:0000012 false ; + bioregistry.schema:0000024 "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/"^^xsd:string ; + bioregistry.schema:0000027 ncbidrs:72ff6ff882ec447f12df018e6183de59 ; + bioregistry.schema:0000029 "ncbidrs" . + bioregistry:nci.drug a bioregistry.schema:0000001 ; rdfs:label "NCI Drug Dictionary ID" ; dcterms:description "identifier of an entry in the NCI Drug Dictionary"^^xsd:string ; @@ -40121,6 +40136,8 @@ miriam:nbn dcterms:isPartOf bioregistry.metaresource:miriam . miriam:nbrc dcterms:isPartOf bioregistry.metaresource:miriam . +miriam:ncbidrs dcterms:isPartOf bioregistry.metaresource:miriam . + miriam:ncbigene dcterms:isPartOf bioregistry.metaresource:miriam . miriam:ncbiprotein dcterms:isPartOf bioregistry.metaresource:miriam . @@ -43163,7 +43180,7 @@ bioregistry:dctypes a bioregistry.schema:0000001 ; bioregistry.schema:0000006 "http://purl.org/dc/dcmitype/$1"^^xsd:string ; bioregistry.schema:0000012 false ; bioregistry.schema:0000024 "http://purl.org/dc/dcmitype/"^^xsd:string ; - bioregistry.schema:0000027 dctypes:Collection ; + bioregistry.schema:0000027 dcmitype:Collection ; bioregistry.schema:0000029 "dctypes" . bioregistry:deo a bioregistry.schema:0000001 ; @@ -55445,6 +55462,7 @@ bioregistry.metaresource:miriam a bioregistry.schema:0000002 ; miriam:nasc, miriam:nbn, miriam:nbrc, + miriam:ncbidrs, miriam:ncbigene, miriam:ncbiprotein, miriam:ncim, @@ -57662,6 +57680,7 @@ bioregistry.metaresource:bioregistry a bioregistry.schema:0000002 ; bioregistry:ncbi.genome, bioregistry:ncbi.resource, bioregistry:ncbibook, + bioregistry:ncbidrs, bioregistry:ncbigene, bioregistry:ncbigi, bioregistry:ncbiprotein, diff --git a/exports/rdf/schema.jsonld b/exports/rdf/schema.jsonld index b0c3a3875..1fbc19838 100644 --- a/exports/rdf/schema.jsonld +++ b/exports/rdf/schema.jsonld @@ -42,22 +42,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://bioregistry.io/schema/#0000007", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000002" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has resolver formatter" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - } - }, { "@id": "https://bioregistry.io/schema/#0000028", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", @@ -86,71 +70,41 @@ ] }, { - "@id": "https://bioregistry.io/schema/#0000012", + "@id": "https://bioregistry.io/schema/#0000023", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." + "@value": "An alternative or synonymous prefix" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "is deprecated" + "@value": "has alternative prefix" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#boolean" + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2000/01/rdf-schema#subPropertyOf": { + "@id": "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": { + "@id": "http://identifiers.org/idot/alternatePrefix" } }, { - "@id": "https://bioregistry.io/schema/#0000027", + "@id": "https://bioregistry.io/schema/#0000018", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "An expanded example URL for a resource or metaresource." + "@value": "Terms from the source appear in the target resource" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has resource example" + "@value": "appears in" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - }, - "http://www.w3.org/2002/07/owl#equivalentProperty": { - "@id": "http://rdfs.org/ns/void#exampleResource" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000001", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A type for entries in the Bioregistry's registry." - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Resource" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000020", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A person" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Person" - }, - "http://www.w3.org/2002/07/owl#equivalentClass": { - "@id": "http://xmlns.com/foaf/0.1/Person" - } - }, - { - "@id": "https://bioregistry.io/schema/#0000002", - "@type": "http://www.w3.org/2000/01/rdf-schema#Class", - "http://purl.org/dc/terms/description": { - "@value": "A type for entries in the Bioregistry's metaregistry." - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Registry" + "@id": "https://bioregistry.io/schema/#0000001" } }, { @@ -181,31 +135,46 @@ ] }, { - "@id": "https://bioregistry.io/schema/#0000008", + "@id": "https://bioregistry.io/schema/#0000012", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The pattern for identifiers in the given resource" + "@value": "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has local unique identifier pattern" + "@value": "is deprecated" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" + "@id": "http://www.w3.org/2001/XMLSchema#boolean" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000025", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "An organization" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": [ - { - "@id": "http://identifiers.org/idot/identifierPattern" - }, - { - "@id": "http://www.wikidata.org/entity/P1793" - }, - { - "@id": "http://vocabularies.bridgedb.org/ops#hasRegexPattern" - } - ] + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Organization" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000017", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" + }, + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "depends on" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000001" + } }, { "@id": "https://bioregistry.io/schema/#0000016", @@ -224,152 +193,162 @@ } }, { - "@id": "https://bioregistry.io/schema/#0000019", + "@id": "https://bioregistry.io/schema/#0000002", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A type for entries in the Bioregistry's metaregistry." + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Registry" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000026", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The responsible person for a resource" + "@value": "An organization" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has responsible" + "@value": "has identifier space owner" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000020" + "@id": "https://bioregistry.io/schema/#0000025" } }, { - "@id": "https://bioregistry.io/schema/#0000018", + "@id": "https://bioregistry.io/schema/#0000020", + "@type": "http://www.w3.org/2000/01/rdf-schema#Class", + "http://purl.org/dc/terms/description": { + "@value": "A person" + }, + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "Person" + }, + "http://www.w3.org/2002/07/owl#equivalentClass": { + "@id": "http://xmlns.com/foaf/0.1/Person" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000027", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "Terms from the source appear in the target resource" + "@value": "An expanded example URL for a resource or metaresource." }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "appears in" + "@value": "has resource example" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": { + "@id": "http://rdfs.org/ns/void#exampleResource" } }, { - "@id": "https://bioregistry.io/schema/#0000025", + "@id": "https://bioregistry.io/schema/#0000001", "@type": "http://www.w3.org/2000/01/rdf-schema#Class", "http://purl.org/dc/terms/description": { - "@value": "An organization" + "@value": "A type for entries in the Bioregistry's registry." }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "Organization" + "@value": "Resource" } }, { - "@id": "https://bioregistry.io/schema/#0000029", + "@id": "https://bioregistry.io/schema/#0000006", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "has canonical prefix" + "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has prefix" + "@value": "has provider formatter" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "http://www.w3.org/2001/XMLSchema#string" }, "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "http://www.w3.org/ns/shacl#prefix" - }, - { - "@id": "http://purl.org/vocab/vann/preferredNamespacePrefix" + "@id": "http://identifiers.org/idot/accessPattern" }, { - "@id": "http://identifiers.org/idot/preferredPrefix" + "@id": "http://www.wikidata.org/entity/P1630" }, { - "@id": "http://vocabularies.bridgedb.org/ops#systemCode" + "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" } ] }, { - "@id": "https://bioregistry.io/schema/#0000011", + "@id": "https://bioregistry.io/schema/#0000019", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." + "@value": "The responsible person for a resource" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "provides for" + "@value": "has responsible" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "https://bioregistry.io/schema/#0000020" } }, { - "@id": "https://bioregistry.io/schema/#0000021", + "@id": "https://bioregistry.io/schema/#0000022", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The reviewer of a prefix" + "@value": "The main contact person for a registry" }, "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "https://bioregistry.io/schema/#0000002" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has reviewer" + "@value": "has responsible" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "https://bioregistry.io/schema/#0000020" } }, { - "@id": "https://bioregistry.io/schema/#0000006", + "@id": "https://bioregistry.io/schema/#0000029", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." + "@value": "has canonical prefix" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has provider formatter" + "@value": "has prefix" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "http://www.w3.org/2001/XMLSchema#string" }, "http://www.w3.org/2002/07/owl#equivalentProperty": [ { - "@id": "http://identifiers.org/idot/accessPattern" + "@id": "http://www.w3.org/ns/shacl#prefix" }, { - "@id": "http://www.wikidata.org/entity/P1630" + "@id": "http://purl.org/vocab/vann/preferredNamespacePrefix" }, { - "@id": "http://vocabularies.bridgedb.org/ops#hasPrimaryUriPattern" + "@id": "http://identifiers.org/idot/preferredPrefix" + }, + { + "@id": "http://vocabularies.bridgedb.org/ops#systemCode" } ] }, - { - "@id": "https://bioregistry.io/schema/#0000010", - "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", - "http://purl.org/dc/terms/description": { - "@value": "A download link for the given resource" - }, - "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" - }, - "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has download URL" - }, - "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "http://www.w3.org/2001/XMLSchema#string" - } - }, { "@id": "https://bioregistry.io/schema/#0000024", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", @@ -398,36 +377,47 @@ ] }, { - "@id": "https://bioregistry.io/schema/#0000026", + "@id": "https://bioregistry.io/schema/#0000007", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "An organization" + "@value": "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." }, "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000001" + "@id": "https://bioregistry.io/schema/#0000002" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has identifier space owner" + "@value": "has resolver formatter" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000025" + "@id": "http://www.w3.org/2001/XMLSchema#string" } }, { - "@id": "https://bioregistry.io/schema/#0000022", + "@id": "https://bioregistry.io/schema/#0000008", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The main contact person for a registry" + "@value": "The pattern for identifiers in the given resource" }, "http://www.w3.org/2000/01/rdf-schema#domain": { - "@id": "https://bioregistry.io/schema/#0000002" + "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has responsible" + "@value": "has local unique identifier pattern" }, "http://www.w3.org/2000/01/rdf-schema#range": { - "@id": "https://bioregistry.io/schema/#0000020" - } + "@id": "http://www.w3.org/2001/XMLSchema#string" + }, + "http://www.w3.org/2002/07/owl#equivalentProperty": [ + { + "@id": "http://identifiers.org/idot/identifierPattern" + }, + { + "@id": "http://www.wikidata.org/entity/P1793" + }, + { + "@id": "http://vocabularies.bridgedb.org/ops#hasRegexPattern" + } + ] }, { "@id": "https://bioregistry.io/schema/#0000003", @@ -440,41 +430,51 @@ } }, { - "@id": "https://bioregistry.io/schema/#0000017", + "@id": "https://bioregistry.io/schema/#0000011", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" + "@value": "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "depends on" + "@value": "provides for" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "https://bioregistry.io/schema/#0000001" } }, { - "@id": "https://bioregistry.io/schema/#0000023", + "@id": "https://bioregistry.io/schema/#0000010", "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", "http://purl.org/dc/terms/description": { - "@value": "An alternative or synonymous prefix" + "@value": "A download link for the given resource" }, "http://www.w3.org/2000/01/rdf-schema#domain": { "@id": "https://bioregistry.io/schema/#0000001" }, "http://www.w3.org/2000/01/rdf-schema#label": { - "@value": "has alternative prefix" + "@value": "has download URL" }, "http://www.w3.org/2000/01/rdf-schema#range": { "@id": "http://www.w3.org/2001/XMLSchema#string" + } + }, + { + "@id": "https://bioregistry.io/schema/#0000021", + "@type": "http://www.w3.org/1999/02/22-rdf-syntax-ns#Property", + "http://purl.org/dc/terms/description": { + "@value": "The reviewer of a prefix" }, - "http://www.w3.org/2000/01/rdf-schema#subPropertyOf": { - "@id": "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" + "http://www.w3.org/2000/01/rdf-schema#domain": { + "@id": "https://bioregistry.io/schema/#0000001" }, - "http://www.w3.org/2002/07/owl#equivalentProperty": { - "@id": "http://identifiers.org/idot/alternatePrefix" + "http://www.w3.org/2000/01/rdf-schema#label": { + "@value": "has reviewer" + }, + "http://www.w3.org/2000/01/rdf-schema#range": { + "@id": "https://bioregistry.io/schema/#0000020" } } ] diff --git a/exports/rdf/schema.nt b/exports/rdf/schema.nt index 89972bb54..351af2db0 100644 --- a/exports/rdf/schema.nt +++ b/exports/rdf/schema.nt @@ -1,133 +1,133 @@ - "Terms from the source appear in the target resource" . - . + . + . + "has canonical" . + . + . + . + "A type for entries in the Bioregistry's metaregistry." . + "A type for entries in the Bioregistry's registry." . + "A type for entries in the Bioregistry's collections" . "The responsible person for a resource" . - . - "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . - . - "An alternative or synonymous prefix" . - "A download link for the given resource" . - . - . - . - . - "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." . - . - "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." . - "has download URL" . + "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." . + . + "depends on" . + . + "An organization" . + . + . + . . - . + . + "A download link for the given resource" . . - . - . - "The URL prefix for a provider that does not $1 for the identifier (or metaidentifier) that should be resolved." . - . - . - . + "Registry" . + . + "Collection" . + . + "An identifier for a resource or metaresource." . + "has local unique identifier example" . + . + "has reviewer" . + . . + . + . "has alternative prefix" . - "has local unique identifier example" . - . - "is deprecated" . - . - . - . - . - . - . - . - . + "appears in" . + . + . + . + . + "A person" . . - . - . - "Registry" . + . + . "The pattern for identifiers in the given resource" . - "appears in" . - "Collection" . - "has prefix" . - . . - "Person" . - "has responsible" . - "A type for entries in the Bioregistry's collections" . - . - . - . - . - . - . + . "The pattern for expanded URIs in the given resource" . - "has canonical prefix" . - . - . - . - . - "An organization" . + . + . + . + . + . . - . - . + "has local unique identifier pattern" . + . + "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." . + "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." . + . + . + . + . + "has prefix" . + . + . + . + . + . + "has provider formatter" . + . + . + . + "has download URL" . + "has responsible" . + . + . + . + . "has URI prefix" . - "has canonical" . - "A type for entries in the Bioregistry's metaregistry." . - . - . - "The reviewer of a prefix" . - "has identifier space owner" . - . - . - . - "An expanded example URL for a resource or metaresource." . + . + "provides for" . + "Terms from the source appear in the target resource" . "The main contact person for a registry" . + . + . "has URI pattern" . - "Organization" . - . - . + . + . "has responsible" . + "A property whose subject is a resource that denotes if it is still available and usable? Currently this is a blanket term for decommissioned, unable to locate, abandoned, etc." . + "has resolver formatter" . + . + . + . + . + . + "The reviewer of a prefix" . + "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" . + "has identifier space owner" . . + . + . + "has canonical prefix" . + "The URL format for a resolver that contains $1 for the prefix and $2 for the identifier that should be resolved." . + "Organization" . + "An alternative or synonymous prefix" . + . + . . - . - "The data in resource denoted by the subject prefix depends on the data in the resources denoted by the object prefix" . - "Resource" . - . - "A type for entries in the Bioregistry's registry." . - . - . - . - "An identifier for a resource or metaresource." . - . - "A person" . - . - "A property connecting two prefixes that share an IRI where the subject is the non-preferred prefix and the target is the preferred prefix. See examples [here](https://bioregistry.io/highlights/relations#canonical)." . - "depends on" . - "has local unique identifier pattern" . - . - . - . - . - . - . - . - . - "For resources that do not create their own controlled vocabulary, this relation should be used to point to a different resource that it uses. For example, CTD's gene resource provides for the NCBI Entrez Gene resource." . - . - . - . - "has provider formatter" . - . - . - . - . - "has resource example" . + . . - . - "has resolver formatter" . - . - "has reviewer" . - . - . - . + . . - . - . - "provides for" . - . + "has resource example" . + "The URL format for a provider that contains $1 for the identifier (or metaidentifier) that should be resolved." . + . + . + . + "Person" . + . + . + . + . + . + "Resource" . + "is deprecated" . + . "An organization" . + . + . + . + . + "An expanded example URL for a resource or metaresource." . diff --git a/exports/registry/registry.json b/exports/registry/registry.json index 6bfa059a7..7c2d7f610 100644 --- a/exports/registry/registry.json +++ b/exports/registry/registry.json @@ -36248,6 +36248,18 @@ "preferred_prefix": "ncbibook", "uri_format": "https://www.ncbi.nlm.nih.gov/books/$1" }, + "ncbidrs": { + "description": "This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. ", + "example": "72ff6ff882ec447f12df018e6183de59", + "homepage": "https://www.ncbi.nlm.nih.gov/", + "mappings": { + "miriam": "ncbidrs" + }, + "name": "NCBI Data Repository Service", + "pattern": "^[0-9a-fA-F]{32}$", + "preferred_prefix": "ncbidrs", + "uri_format": "https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1" + }, "ncbigene": { "description": "Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.", "example": "100010", diff --git a/exports/registry/registry.tsv b/exports/registry/registry.tsv index b9b956928..fefa89f84 100644 --- a/exports/registry/registry.tsv +++ b/exports/registry/registry.tsv @@ -1136,7 +1136,7 @@ ncbi.assembly Assembly https://www.ncbi.nlm.nih.gov/ A database providing inform ncbi.genome NCBI Genome https://www.ncbi.nlm.nih.gov/genome This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations. ^\d+$ 51 https://www.ncbi.nlm.nih.gov/genome/$1 False NCBIGenome 2787 r3d100010785 ncbi.resource NCBI Registry https://www.ncbi.nlm.nih.gov/genbank/collab/db_xref/ A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources ECOCYC https://bioregistry.io/metaregistry/ncbi/$1 False ncbibook NCBI Bookshelf https://www.ncbi.nlm.nih.gov/books The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover. ^NBK\d+$ NBK331 https://www.ncbi.nlm.nih.gov/books/$1 False -ncbidrs NCBI Data Repository Service https://www.ncbi.nlm.nih.gov/ This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. ^[0-9a-fA-F]{32}$ 72ff6ff882ec447f12df018e6183de59 False ncbidrs +ncbidrs NCBI Data Repository Service https://www.ncbi.nlm.nih.gov/ This is the namespace for the archive of sequence and other files provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in the sequencing data model managed under the insdc.sra namespace. ^[0-9a-fA-F]{32}$ 72ff6ff882ec447f12df018e6183de59 https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1 False ncbidrs ncbigene Entrez Gene https://www.ncbi.nlm.nih.gov/gene Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis. ^\d+$ 100010 https://www.ncbi.nlm.nih.gov/gene/$1 EGID|EntrezGene|NCBIGene|NCBI_GeneID|entrez|entrez gene/locuslink False NCBIGene 1027 2.16.840.1.113883.6.340 ncbigene ncbigene ncbigene r3d100010650 DB-0118 P351 ncbigi GenInfo Identifier https://www.ncbi.nlm.nih.gov/genbank/sequenceids/ A GI number (for GenInfo Identifier, sometimes written in lower case, _gi_) is a simple series of digits that are assigned consecutively to each sequence record processed by NCBI. The GI number bears no resemblance to the Version number of the sequence record. Each time a sequence record is changed, it is assigned a new GI number. ^\d+$ 568815597 http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1 NCBI_gi|ncbi.gi False NCBIGI 2314 genbank ncbiprotein NCBI Protein https://www.ncbi.nlm.nih.gov/protein The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB. ^(\w+\d+(\.\d+)?)|(NP_\d+)$ CAA71118.1 https://www.ncbi.nlm.nih.gov/protein/$1 False NCBIProtein ncbiprotein ncbiprotein ncbi.protein r3d100010776 diff --git a/exports/registry/registry.yml b/exports/registry/registry.yml index 5b686f294..66d9428eb 100644 --- a/exports/registry/registry.yml +++ b/exports/registry/registry.yml @@ -33601,6 +33601,18 @@ ncbibook: pattern: ^NBK\d+$ preferred_prefix: ncbibook uri_format: https://www.ncbi.nlm.nih.gov/books/$1 +ncbidrs: + description: 'This is the namespace for the archive of sequence and other files + provided by NCBI e.g. in SRA and dbGaP. These files are related to objects in + the sequencing data model managed under the insdc.sra namespace. ' + example: 72ff6ff882ec447f12df018e6183de59 + homepage: https://www.ncbi.nlm.nih.gov/ + mappings: + miriam: ncbidrs + name: NCBI Data Repository Service + pattern: ^[0-9a-fA-F]{32}$ + preferred_prefix: ncbidrs + uri_format: https://locate.be-md.ncbi.nlm.nih.gov/ga4gh/drs/v1/objects/$1 ncbigene: description: Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute diff --git a/exports/tables/summary.tex b/exports/tables/summary.tex index 7c4dd8a64..54d309e70 100644 --- a/exports/tables/summary.tex +++ b/exports/tables/summary.tex @@ -1,16 +1,16 @@ \begin{table} -\caption{Overview statistics of the Bioregistry on 2023-11-01.} +\caption{Overview statistics of the Bioregistry on 2023-11-02.} \label{tab:bioregistry-summary} \begin{tabular}{lr} \toprule Category & Count \\ \midrule -Version & 0.10.67-dev \\ +Version & 0.10.68-dev \\ Registries Surveyed & 27 \\ Registries Aligned & 26 \\ -Prefixes & 1730 \\ +Prefixes & 1731 \\ Synonyms & 472 \\ -Cross-registry Mappings & 7834 \\ +Cross-registry Mappings & 7836 \\ Curated Mismatches & 52 \\ Collections and Contexts & 13 \\ Direct Contributors & 46 \\ diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index f1edbb9a5..a03fc9360 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -15898,8 +15898,8 @@ "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html", "name": "Clinical measurement ontology", "prefix": "cmo", - "version": "2.195", - "version.iri": "http://purl.obolibrary.org/obo/cmo/2.195/cmo.owl" + "version": "2.196", + "version.iri": "http://purl.obolibrary.org/obo/cmo/2.196/cmo.owl" }, "ontobee": { "library": "Library", @@ -49522,7 +49522,7 @@ "name": "iNaturalist taxon ID", "pattern": "^[1-9]\\d{0,6}$", "prefix": "P3151", - "uri_format": "https://www.inaturalist.org/taxa/$1" + "uri_format": "https://inaturalist.org/taxa/$1" } }, "inaturalist.user": { @@ -61152,8 +61152,8 @@ "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000", "name": "Measurement method ontology", "prefix": "mmo", - "version": "2.117", - "version.iri": "http://purl.obolibrary.org/obo/mmo/2.117/mmo.owl" + "version": "2.118", + "version.iri": "http://purl.obolibrary.org/obo/mmo/2.118/mmo.owl" }, "ontobee": { "library": "Library", @@ -79400,13 +79400,14 @@ "database": "Q11801904", "description": "identifier for a scientific work issued by PubMed Central (without \"PMC\" prefix)", "example": [ - "1201091" + "1201091", + "3682911" ], "homepage": "https://www.ncbi.nlm.nih.gov/pmc/", "name": "PMCID", "pattern": "^[1-9]\\d{0,7}$", "prefix": "P932", - "uri_format": "http://europepmc.org/articles/PMC$1" + "uri_format": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC$1" } }, "pmdb": { @@ -87630,8 +87631,8 @@ "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html", "name": "Rat Strain Ontology", "prefix": "rs", - "version": "6.208", - "version.iri": "http://purl.obolibrary.org/obo/rs/6.208/rs.owl" + "version": "6.209", + "version.iri": "http://purl.obolibrary.org/obo/rs/6.209/rs.owl" }, "ontobee": { "library": "Library", @@ -93793,12 +93794,12 @@ "ols": { "contact": "contact@fairsharing.org", "description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.", - "download": "https://github.com/FAIRsharing/subject-ontology/raw/master/releases/SRAO.owl", + "download": "https://github.com/FAIRsharing/subject-ontology/raw/master/SRAO.owl", "homepage": "https://github.com/FAIRsharing/subject-ontology", "name": "FAIRsharing Subject Ontology (SRAO)", "prefix": "srao", - "version": "0.3.0", - "version.iri": "http://www.fairsharing.org/ontology/subject/SRAO.owl/0.3.0" + "version": "2023-10-10", + "version.iri": "http://www.fairsharing.org/ontology/subject/SRAO/releases/2023-10-10/SRAO.owl" }, "part_of": "fairsharing", "pattern": "^\\d{7}$", @@ -98651,8 +98652,8 @@ "homepage": "http://uberon.org", "name": "Uber-anatomy ontology", "prefix": "uberon", - "version": "2023-09-05", - "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2023-09-05/uberon.owl" + "version": "2023-10-27", + "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2023-10-27/uberon.owl" }, "ontobee": { "library": "Library", @@ -105443,8 +105444,8 @@ "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000", "name": "Experimental condition ontology", "prefix": "xco", - "version": "4.141", - "version.iri": "http://purl.obolibrary.org/obo/xco/4.141/xco.owl" + "version": "4.142", + "version.iri": "http://purl.obolibrary.org/obo/xco/4.142/xco.owl" }, "ontobee": { "library": "Library", diff --git a/src/bioregistry/data/external/bioportal/curation.tsv b/src/bioregistry/data/external/bioportal/curation.tsv index 0b86bacaf..74707a65b 100644 --- a/src/bioregistry/data/external/bioportal/curation.tsv +++ b/src/bioregistry/data/external/bioportal/curation.tsv @@ -165,7 +165,8 @@ DSEO Data Science Education Ontology http://bigdatau.org/about_erudite Simple IS DSIP Pharmacy mock data Here is the mock data about pharmacy management in the Data Science in Practice. DSIP1V DSIP1_vocabulary This is vocabularies for the DSIP Group 1 FieldLabs DSIP2324_DEMO DSIP2324_Demonstration This is an ontology made for the purposes of demonstrating the process of vocabulary creation for the Data Science in Practice course. Update V0.2: Fixed Leiden University coupling to DBpedia -DSIP8 DSIP8REFUGEE refugee datapod ontology +DSIP8 DSIP8REFUGEE refugee datapod updated ontology after feedback +DSIPF7 DSIP FiledLab7 The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research. E-PPO Enhanced Personal Profile Ontology The Enhanced Personal Profile Ontology (e-PPO) provides personal profile of personnel that are required for software requirement engineering task selection. Properties of the ontology includes static and dynamic features. Name, gender, date of birth, etc. are static in nature and may not change. Other static properties such as educational qualification and skills acquired can be updated while others including area of specialization and profession are dynamic and can be changed. Also, areas of specializations cannot be out of the scope of one’s profession, although one personnel can have multiple profession and skills, more than one profession can share things in common such as the same professional qualification may be required. EBP EmpowerBP Clinical practice guidelines, behaviour change theories, and associated behaviour change strategies for the management of hypertension. ECM4M-MD-VOCABS EarthCube M4M Metadata Vocabulary https://github.com/go-fair-us/EarthCubeM4M Collection of EarthCube M4M vocabularies for sample metadata definitions. @@ -280,7 +281,9 @@ HIO Hearing Impairment Ontology The Hearing Impairment Ontology (HIO) is a comm HIV HIV ontology The HIV ontology encompasses all knowledge about HIV HIVCRS HIVCompoundRels http://blog.51.ca/u-345129/ The Ontology to express the ternary relations of HIV1 HIVHPV HIVHPV +HIVHPVFGS HIV, HPV, FGS vocabulary Vocabulary for testing and vaccination records for HIV, HPV, and FGS in Uganda. HIVHPVSCHISTOSOM HIVHPVSchistosomiasis This is the ontology containing the controlled terms and semantic properties used in the HIV, HPV and Schistosomiasis dataset obtained from the MOH Uganda +HIVHPVSTOM HIVHPVStom The data of HIVHPV and Schistosomiasis HIVMT HIVMutation https://blog.51.ca/u-345129/ This is an ontology about the mutations Of HIV1 and the relations between them and the clinical practices. And it has imported the main ontology: https://bioportal.bioontology.org/ontologies/HIVO004. HIVO004 HIVOntologymain.owl http://biomedinteg.org A Project of Biomedical Ontology for Systems Biomedicine. The Project includes, so far, a main ontology (HIVOnt0**.owl) which is imported by several other sub ontologies AIDSClinic0**.owl, etc. The goals of the Project include: (1). To pilot the novel researches on AIDS and HIV or other diseases by viruses, by means of the ontology and other biomedical informatics technologies, connecting the insights of the Biomedical Knowledge Integration (BMKI), systems biomedicine, complexity sciences etc. (2). To Carry out the methodology explorations for the goals above. HL7 Health Level Seven Reference Implementation Model, Version 3 http://www.hl7.org This version is the first update to Normative RIM, Release 3. It is based on changes approved in Harmonization in November 2010. This release of the RIM is bound to HL7 Abstract Data Types Release 2. @@ -665,7 +668,7 @@ SPTO Solanaceae Phenotype Ontology solgenomics.net Solanaceae crop phenotypes an SSE Surgical Secondary Events https://www.mskcc.org/departments/surgery/surgical-secondary-events-system Memorial Sloan-Kettering Cancer Center Surgical Secondary Events Ontology (Adverse Events) SSN Semantic Sensor Network Ontology https://www.w3.org/TR/vocab-ssn/ This ontology describes sensors, actuators and observations, and related concepts. It does not describe domain concepts, time, locations, etc. these are intended to be included from other ontologies via OWL imports. SSO Syndromic Surveillance Ontology The SSO encodes agreement among experts about how Emergency Department (ED) chief complaints are grouped into syndromes of public health importance (consensus definitions). -STMSO symptomatic treatment of multiple sclerosis ontology +STMSO symptomatic treatment of multiple sclerosis ontology STMSO is the first comprehensive semantic representation of symptomatic treatment of MS and provides a major step toward the development of intelligent Clinical Decision Support System (CDSS) for MS symptomatic treatment. STO-DRAFT The Stroke Ontology The Stroke Ontology (STO) covers the knowledge domain of stroke based on expert views and translational continuum of stroke research. suicideo suicideonto ontology for suicidology SURGICAL Nurse Surgical This is an ontology of a surgical nurse's process domain diff --git a/src/bioregistry/data/external/bioportal/processed.json b/src/bioregistry/data/external/bioportal/processed.json index 89b64c42e..c1799bbe7 100644 --- a/src/bioregistry/data/external/bioportal/processed.json +++ b/src/bioregistry/data/external/bioportal/processed.json @@ -2539,10 +2539,19 @@ "email": "s3790525@vuw.leidenuniv.nl", "name": "Hedy Ho" }, - "description": "refugee datapod ontology", + "description": "refugee datapod updated ontology after feedback", "name": "DSIP8REFUGEE", "prefix": "DSIP8" }, + "DSIPF7": { + "contact": { + "email": "senjutibala15@gmail.com", + "name": "Senjuti Bala" + }, + "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", + "name": "DSIP FiledLab7", + "prefix": "DSIPF7" + }, "DTO": { "contact": { "email": "sschurer@med.miami.edu", @@ -4322,6 +4331,15 @@ "name": "HIVHPV", "prefix": "HIVHPV" }, + "HIVHPVFGS": { + "contact": { + "email": "fabianjennrich@duck.com", + "name": "Fabian Jennrich" + }, + "description": "Vocabulary for testing and vaccination records for HIV, HPV, and FGS in Uganda.", + "name": "HIV, HPV, FGS vocabulary", + "prefix": "HIVHPVFGS" + }, "HIVHPVSCHISTOSOM": { "contact": { "email": "mariam.basajja@gmail.com", @@ -4332,6 +4350,15 @@ "prefix": "HIVHPVSCHISTOSOM", "version": "1.1" }, + "HIVHPVSTOM": { + "contact": { + "email": "nc1635718843@gmail.com", + "name": "Cong Ning" + }, + "description": "The data of HIVHPV and Schistosomiasis", + "name": "HIVHPVStom", + "prefix": "HIVHPVSTOM" + }, "HIVMT": { "contact": { "email": "hanfeib@gmail.com", @@ -4514,7 +4541,7 @@ "description": "The value set for the Human Reference Atlas metadata records as part of the Human BioMolecular Atlas Program (HuBMAP) (https://hubmapconsortium.org)", "name": "Human Reference Atlas Value Set", "prefix": "HRAVS", - "version": "2.2.0" + "version": "2.2.1" }, "HRDO": { "contact": { @@ -8794,7 +8821,8 @@ "description": "This ontology describes biotic and abiotic stresses that a plant may encounter.", "homepage": "https://github.com/Planteome/plant-stress-ontology", "name": "Plant Stress Ontology", - "prefix": "PLANTSO" + "prefix": "PLANTSO", + "version": "2023-10-19" }, "PLIO": { "contact": { @@ -10045,6 +10073,11 @@ "version": "RC1.4" }, "STMSO": { + "contact": { + "email": "misaghzahiri@yahoo.com", + "name": "misagh zahiri" + }, + "description": "STMSO is the first comprehensive semantic representation of symptomatic treatment of MS and provides a major step toward the development of intelligent Clinical Decision Support System (CDSS) for MS symptomatic treatment.", "name": "symptomatic treatment of multiple sclerosis ontology", "prefix": "STMSO" }, diff --git a/src/bioregistry/data/external/bioportal/raw.json b/src/bioregistry/data/external/bioportal/raw.json index 3db79f256..b2fd9c8e9 100644 --- a/src/bioregistry/data/external/bioportal/raw.json +++ b/src/bioregistry/data/external/bioportal/raw.json @@ -1149,6 +1149,7 @@ "@type": "http://data.bioontology.org/metadata/Ontology", "acronym": "DSIP1V", "administeredBy": [ + "https://data.bioontology.org/users/ZYL", "https://data.bioontology.org/users/thealexchang" ], "contact": { @@ -11024,7 +11025,7 @@ "email": "s3790525@vuw.leidenuniv.nl", "name": "Hedy Ho" }, - "description": "refugee datapod ontology", + "description": "refugee datapod updated ontology after feedback", "links": { "@context": { "analytics": "http://data.bioontology.org/metadata/Analytics", @@ -18014,6 +18015,59 @@ "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", "version": "1.0" }, + { + "@id": "https://data.bioontology.org/ontologies/HIVHPVFGS", + "@type": "http://data.bioontology.org/metadata/Ontology", + "acronym": "HIVHPVFGS", + "administeredBy": [ + "https://data.bioontology.org/users/FabianJennrich" + ], + "contact": { + "email": "fabianjennrich@duck.com", + "name": "Fabian Jennrich" + }, + "description": "Vocabulary for testing and vaccination records for HIV, HPV, and FGS in Uganda.", + "links": { + "@context": { + "analytics": "http://data.bioontology.org/metadata/Analytics", + "categories": "http://data.bioontology.org/metadata/Category", + "classes": "http://www.w3.org/2002/07/owl#Class", + "download": "http://data.bioontology.org/metadata/Ontology", + "groups": "http://data.bioontology.org/metadata/Group", + "instances": "http://data.bioontology.org/metadata/Instance", + "latest_submission": "http://data.bioontology.org/metadata/OntologySubmission", + "metrics": "http://data.bioontology.org/metadata/Metrics", + "notes": "http://data.bioontology.org/metadata/Note", + "projects": "http://data.bioontology.org/metadata/Project", + "properties": "http://data.bioontology.org/metadata/Property", + "reviews": "http://data.bioontology.org/metadata/Review", + "roots": "http://www.w3.org/2002/07/owl#Class", + "single_class": "http://www.w3.org/2002/07/owl#Class", + "submissions": "http://data.bioontology.org/metadata/OntologySubmission", + "ui": "http://data.bioontology.org/metadata/Ontology", + "views": "http://data.bioontology.org/metadata/Ontology" + }, + "analytics": "https://data.bioontology.org/ontologies/HIVHPVFGS/analytics", + "categories": "https://data.bioontology.org/ontologies/HIVHPVFGS/categories", + "classes": "https://data.bioontology.org/ontologies/HIVHPVFGS/classes", + "download": "https://data.bioontology.org/ontologies/HIVHPVFGS/download", + "groups": "https://data.bioontology.org/ontologies/HIVHPVFGS/groups", + "instances": "https://data.bioontology.org/ontologies/HIVHPVFGS/instances", + "latest_submission": "https://data.bioontology.org/ontologies/HIVHPVFGS/latest_submission", + "metrics": "https://data.bioontology.org/ontologies/HIVHPVFGS/metrics", + "notes": "https://data.bioontology.org/ontologies/HIVHPVFGS/notes", + "projects": "https://data.bioontology.org/ontologies/HIVHPVFGS/projects", + "properties": "https://data.bioontology.org/ontologies/HIVHPVFGS/properties", + "reviews": "https://data.bioontology.org/ontologies/HIVHPVFGS/reviews", + "roots": "https://data.bioontology.org/ontologies/HIVHPVFGS/classes/roots", + "single_class": "https://data.bioontology.org/ontologies/HIVHPVFGS/classes/{class_id}", + "submissions": "https://data.bioontology.org/ontologies/HIVHPVFGS/submissions", + "ui": "http://bioportal.bioontology.org/ontologies/HIVHPVFGS", + "views": "https://data.bioontology.org/ontologies/HIVHPVFGS/views" + }, + "name": "HIV, HPV, FGS vocabulary", + "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY" + }, { "@id": "https://data.bioontology.org/ontologies/HCODONONT", "@type": "http://data.bioontology.org/metadata/Ontology", @@ -19393,7 +19447,11 @@ "administeredBy": [ "https://data.bioontology.org/users/Misagh" ], - "flat": null, + "contact": { + "email": "misaghzahiri@yahoo.com", + "name": "misagh zahiri" + }, + "description": "STMSO is the first comprehensive semantic representation of symptomatic treatment of MS and provides a major step toward the development of intelligent Clinical Decision Support System (CDSS) for MS symptomatic treatment.", "links": { "@context": { "analytics": "http://data.bioontology.org/metadata/Analytics", @@ -19433,8 +19491,7 @@ "views": "https://data.bioontology.org/ontologies/STMSO/views" }, "name": "symptomatic treatment of multiple sclerosis ontology", - "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", - "summaryOnly": false + "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY" }, { "@id": "https://data.bioontology.org/ontologies/XEO", @@ -47797,7 +47854,7 @@ }, "name": "Human Reference Atlas Value Set", "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", - "version": "2.2.0" + "version": "2.2.1" }, { "@id": "https://data.bioontology.org/ontologies/PVONTO", @@ -49763,6 +49820,59 @@ "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", "version": "2003-05-0" }, + { + "@id": "https://data.bioontology.org/ontologies/DSIPF7", + "@type": "http://data.bioontology.org/metadata/Ontology", + "acronym": "DSIPF7", + "administeredBy": [ + "https://data.bioontology.org/users/s.bala" + ], + "contact": { + "email": "senjutibala15@gmail.com", + "name": "Senjuti Bala" + }, + "description": "The Human Trafficking Vocabulary is an essential resource for researchers and analysts working with raw interview data gathered from refugees affected by human trafficking. It offers a standardized framework for categorizing and understanding various aspects of human trafficking incidents. The vocabulary includes terms for describing the nationality and location of human traffickers, the number of times traffickers are mentioned by independent sources, the type of observation obtained (first-hand or second-hand), and more. This vocabulary was created as part of Data Science in Practice Fieldlab-7, with guidance from Kai Smiths. It is continuously updated to reflect new insights and developments in the field of human trafficking research.", + "links": { + "@context": { + "analytics": "http://data.bioontology.org/metadata/Analytics", + "categories": "http://data.bioontology.org/metadata/Category", + "classes": "http://www.w3.org/2002/07/owl#Class", + "download": "http://data.bioontology.org/metadata/Ontology", + "groups": "http://data.bioontology.org/metadata/Group", + "instances": "http://data.bioontology.org/metadata/Instance", + "latest_submission": "http://data.bioontology.org/metadata/OntologySubmission", + "metrics": "http://data.bioontology.org/metadata/Metrics", + "notes": "http://data.bioontology.org/metadata/Note", + "projects": "http://data.bioontology.org/metadata/Project", + "properties": "http://data.bioontology.org/metadata/Property", + "reviews": "http://data.bioontology.org/metadata/Review", + "roots": "http://www.w3.org/2002/07/owl#Class", + "single_class": "http://www.w3.org/2002/07/owl#Class", + "submissions": "http://data.bioontology.org/metadata/OntologySubmission", + "ui": "http://data.bioontology.org/metadata/Ontology", + "views": "http://data.bioontology.org/metadata/Ontology" + }, + "analytics": "https://data.bioontology.org/ontologies/DSIPF7/analytics", + "categories": "https://data.bioontology.org/ontologies/DSIPF7/categories", + "classes": "https://data.bioontology.org/ontologies/DSIPF7/classes", + "download": "https://data.bioontology.org/ontologies/DSIPF7/download", + "groups": "https://data.bioontology.org/ontologies/DSIPF7/groups", + "instances": "https://data.bioontology.org/ontologies/DSIPF7/instances", + "latest_submission": "https://data.bioontology.org/ontologies/DSIPF7/latest_submission", + "metrics": "https://data.bioontology.org/ontologies/DSIPF7/metrics", + "notes": "https://data.bioontology.org/ontologies/DSIPF7/notes", + "projects": "https://data.bioontology.org/ontologies/DSIPF7/projects", + "properties": "https://data.bioontology.org/ontologies/DSIPF7/properties", + "reviews": "https://data.bioontology.org/ontologies/DSIPF7/reviews", + "roots": "https://data.bioontology.org/ontologies/DSIPF7/classes/roots", + "single_class": "https://data.bioontology.org/ontologies/DSIPF7/classes/{class_id}", + "submissions": "https://data.bioontology.org/ontologies/DSIPF7/submissions", + "ui": "http://bioportal.bioontology.org/ontologies/DSIPF7", + "views": "https://data.bioontology.org/ontologies/DSIPF7/views" + }, + "name": "DSIP FiledLab7 ", + "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY" + }, { "@id": "https://data.bioontology.org/ontologies/RGD", "@type": "http://data.bioontology.org/metadata/Ontology", @@ -55940,6 +56050,60 @@ "publication": "http://lab.rockefeller.edu/smogorzewska/ifarpublications", "version": "3" }, + { + "@id": "https://data.bioontology.org/ontologies/HIVHPVSTOM", + "@type": "http://data.bioontology.org/metadata/Ontology", + "acronym": "HIVHPVSTOM", + "administeredBy": [ + "https://data.bioontology.org/users/C.Ning" + ], + "contact": { + "email": "nc1635718843@gmail.com", + "name": "Cong Ning" + }, + "description": "The data of HIVHPV and Schistosomiasis", + "links": { + "@context": { + "analytics": "http://data.bioontology.org/metadata/Analytics", + "categories": "http://data.bioontology.org/metadata/Category", + "classes": "http://www.w3.org/2002/07/owl#Class", + "download": "http://data.bioontology.org/metadata/Ontology", + "groups": "http://data.bioontology.org/metadata/Group", + "instances": "http://data.bioontology.org/metadata/Instance", + "latest_submission": "http://data.bioontology.org/metadata/OntologySubmission", + "metrics": "http://data.bioontology.org/metadata/Metrics", + "notes": "http://data.bioontology.org/metadata/Note", + "projects": "http://data.bioontology.org/metadata/Project", + "properties": "http://data.bioontology.org/metadata/Property", + "reviews": "http://data.bioontology.org/metadata/Review", + "roots": "http://www.w3.org/2002/07/owl#Class", + "single_class": "http://www.w3.org/2002/07/owl#Class", + "submissions": "http://data.bioontology.org/metadata/OntologySubmission", + "ui": "http://data.bioontology.org/metadata/Ontology", + "views": "http://data.bioontology.org/metadata/Ontology" + }, + "analytics": "https://data.bioontology.org/ontologies/HIVHPVSTOM/analytics", + "categories": "https://data.bioontology.org/ontologies/HIVHPVSTOM/categories", + "classes": "https://data.bioontology.org/ontologies/HIVHPVSTOM/classes", + "download": "https://data.bioontology.org/ontologies/HIVHPVSTOM/download", + "groups": "https://data.bioontology.org/ontologies/HIVHPVSTOM/groups", + "instances": "https://data.bioontology.org/ontologies/HIVHPVSTOM/instances", + "latest_submission": "https://data.bioontology.org/ontologies/HIVHPVSTOM/latest_submission", + "metrics": "https://data.bioontology.org/ontologies/HIVHPVSTOM/metrics", + "notes": "https://data.bioontology.org/ontologies/HIVHPVSTOM/notes", + "projects": "https://data.bioontology.org/ontologies/HIVHPVSTOM/projects", + "properties": "https://data.bioontology.org/ontologies/HIVHPVSTOM/properties", + "reviews": "https://data.bioontology.org/ontologies/HIVHPVSTOM/reviews", + "roots": "https://data.bioontology.org/ontologies/HIVHPVSTOM/classes/roots", + "single_class": "https://data.bioontology.org/ontologies/HIVHPVSTOM/classes/{class_id}", + "submissions": "https://data.bioontology.org/ontologies/HIVHPVSTOM/submissions", + "ui": "http://bioportal.bioontology.org/ontologies/HIVHPVSTOM", + "views": "https://data.bioontology.org/ontologies/HIVHPVSTOM/views" + }, + "name": "HIVHPVStom", + "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", + "summaryOnly": true + }, { "@id": "https://data.bioontology.org/ontologies/GO", "@type": "http://data.bioontology.org/metadata/Ontology", @@ -56100,7 +56264,8 @@ "views": "https://data.bioontology.org/ontologies/PLANTSO/views" }, "name": "Plant Stress Ontology", - "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY" + "ontologyType": "https://data.bioontology.org/ontology_types/ONTOLOGY", + "version": "2023-10-19" }, { "@id": "https://data.bioontology.org/ontologies/N-CDOH", diff --git a/src/bioregistry/data/external/n2t/raw.yml b/src/bioregistry/data/external/n2t/raw.yml index ae88442fd..dd6aba30b 100644 --- a/src/bioregistry/data/external/n2t/raw.yml +++ b/src/bioregistry/data/external/n2t/raw.yml @@ -9537,6 +9537,22 @@ ark:/36941: redirect: "https://discover.york.ac.uk/ark:$id" na_policy: "NP | (:unkn) unknown | 2023 |" +ark:/23946: + type: "naan" + manager: "n2t" + name: "Louis Andriessen Stichting (=) LAP" + date: "2023.10.31" + redirect: "https://louisandriessenplatform.nl/ark:$id" + na_policy: "NP | (:unkn) unknown | 2023 |" + +ark:/11290: + type: "naan" + manager: "n2t" + name: "Institut de recherche interdisciplinaire Homme-Société (=) IRIHS" + date: "2023.10.31" + redirect: "https://irihs.univ-rouen.fr/ark:$id" + na_policy: "NP | (:unkn) unknown | 2023 |" + ark:/99166/p9: type: "shoulder" name: "EZID CDL agents (=) EZAGENTS" @@ -39143,4 +39159,4 @@ zifdb: redirect: "http://bindr.gdcb.iastate.edu:8080/ZiFDB/controller/checkArticle?artId=$id" -# 4423 added prefixes +# 4425 added prefixes diff --git a/src/bioregistry/data/external/ncbi/raw.html b/src/bioregistry/data/external/ncbi/raw.html index 30fc2fc8e..1eb6cda44 100644 --- a/src/bioregistry/data/external/ncbi/raw.html +++ b/src/bioregistry/data/external/ncbi/raw.html @@ -42,7 +42,7 @@ - +
@@ -4094,8 +4094,8 @@

INSDC Members

- Support Center - + Support Center +

@@ -4301,8 +4301,8 @@

INSDC Members

- - + + diff --git a/src/bioregistry/data/external/ols/processed.json b/src/bioregistry/data/external/ols/processed.json index 927c1c1ba..5947f0f18 100644 --- a/src/bioregistry/data/external/ols/processed.json +++ b/src/bioregistry/data/external/ols/processed.json @@ -301,8 +301,8 @@ "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html", "name": "Clinical measurement ontology", "prefix": "cmo", - "version": "2.195", - "version.iri": "http://purl.obolibrary.org/obo/cmo/2.195/cmo.owl" + "version": "2.196", + "version.iri": "http://purl.obolibrary.org/obo/cmo/2.196/cmo.owl" }, "cmpo": { "contact": "jupp@ebi.ac.uk", @@ -1030,8 +1030,8 @@ "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000", "name": "Measurement method ontology", "prefix": "mmo", - "version": "2.117", - "version.iri": "http://purl.obolibrary.org/obo/mmo/2.117/mmo.owl" + "version": "2.118", + "version.iri": "http://purl.obolibrary.org/obo/mmo/2.118/mmo.owl" }, "mmusdv": { "description": "Life cycle stages for Mus Musculus", @@ -1667,8 +1667,8 @@ "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html", "name": "Rat Strain Ontology", "prefix": "rs", - "version": "6.208", - "version.iri": "http://purl.obolibrary.org/obo/rs/6.208/rs.owl" + "version": "6.209", + "version.iri": "http://purl.obolibrary.org/obo/rs/6.209/rs.owl" }, "rxno": { "contact": "chemistry-ontologies@googlegroups.com", @@ -1777,6 +1777,16 @@ "name": "Spider Ontology", "prefix": "spd" }, + "srao": { + "contact": "contact@fairsharing.org", + "description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.", + "download": "https://github.com/FAIRsharing/subject-ontology/raw/master/SRAO.owl", + "homepage": "https://github.com/FAIRsharing/subject-ontology", + "name": "FAIRsharing Subject Ontology (SRAO)", + "prefix": "srao", + "version": "2023-10-10", + "version.iri": "http://www.fairsharing.org/ontology/subject/SRAO/releases/2023-10-10/SRAO.owl" + }, "stato": { "description": "STATO is the statistical methods ontology. It contains concepts and properties related to statistical methods, probability distributions and other concepts related to statistical analysis, including relationships to study designs and plots.", "download": "http://purl.obolibrary.org/obo/stato.owl", @@ -1895,8 +1905,8 @@ "homepage": "http://uberon.org", "name": "Uber-anatomy ontology", "prefix": "uberon", - "version": "2023-09-05", - "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2023-09-05/uberon.owl" + "version": "2023-10-27", + "version.iri": "http://purl.obolibrary.org/obo/uberon/releases/2023-10-27/uberon.owl" }, "unimod": { "contact": "psidev-ms-vocab@lists.sourceforge.net", @@ -2007,8 +2017,8 @@ "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000", "name": "Experimental condition ontology", "prefix": "xco", - "version": "4.141", - "version.iri": "http://purl.obolibrary.org/obo/xco/4.141/xco.owl" + "version": "4.142", + "version.iri": "http://purl.obolibrary.org/obo/xco/4.142/xco.owl" }, "xlmod": { "contact": "psidev-ms-vocab@lists.sourceforge.net", diff --git a/src/bioregistry/data/external/ols/raw.json b/src/bioregistry/data/external/ols/raw.json index b9eec784a..a8c7ccd49 100644 --- a/src/bioregistry/data/external/ols/raw.json +++ b/src/bioregistry/data/external/ols/raw.json @@ -51,14 +51,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:05.482067532", + "loaded": "2023-10-31T15:33:28.043123714", "message": "", "numberOfIndividuals": 2, "numberOfProperties": 186, "numberOfTerms": 1963, "ontologyId": "ado", "status": "LOADED", - "updated": "2023-10-26T18:37:05.482067532", + "updated": "2023-10-31T15:33:28.043123714", "version": "2.0.1" }, { @@ -109,14 +109,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:44.348852205", + "loaded": "2023-10-31T15:58:54.339073532", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 26, "numberOfTerms": 250, "ontologyId": "aeo", "status": "LOADED", - "updated": "2023-10-26T19:02:44.348852205", + "updated": "2023-10-31T15:58:54.339073532", "version": null }, { @@ -167,14 +167,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:23.713440826", + "loaded": "2023-10-31T16:00:35.816548758", "message": "", "numberOfIndividuals": 29, "numberOfProperties": 187, "numberOfTerms": 539, "ontologyId": "aero", "status": "LOADED", - "updated": "2023-10-26T19:04:23.713440826", + "updated": "2023-10-31T16:00:35.816548758", "version": null }, { @@ -234,14 +234,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:34.510636484", + "loaded": "2023-10-31T16:15:30.141827672", "message": "", "numberOfIndividuals": 48, "numberOfProperties": 430, "numberOfTerms": 3116, "ontologyId": "afo", "status": "LOADED", - "updated": "2023-10-26T19:17:34.510636484", + "updated": "2023-10-31T16:15:30.141827672", "version": "REC/2023/09" }, { @@ -295,14 +295,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:06.381929483", + "loaded": "2023-10-31T15:33:28.930694974", "message": "", "numberOfIndividuals": 552, "numberOfProperties": 293, "numberOfTerms": 4162, "ontologyId": "agro", "status": "LOADED", - "updated": "2023-10-26T18:37:06.381929483", + "updated": "2023-10-31T15:33:28.930694974", "version": null }, { @@ -354,14 +354,14 @@ "es" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:08.549998814", + "loaded": "2023-10-31T15:33:31.172457069", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 547, "numberOfTerms": 7443, "ontologyId": "aism", "status": "LOADED", - "updated": "2023-10-26T18:37:08.549998814", + "updated": "2023-10-31T15:33:31.172457069", "version": "2023-04-14" }, { @@ -420,14 +420,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:11.178737534", + "loaded": "2023-10-31T15:33:33.822498879", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 10, "numberOfTerms": 403, "ontologyId": "amphx", "status": "LOADED", - "updated": "2023-10-26T18:37:11.178737534", + "updated": "2023-10-31T15:33:33.822498879", "version": null }, { @@ -478,14 +478,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:11.319169324", + "loaded": "2023-10-31T15:33:33.952872639", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 27, "numberOfTerms": 619, "ontologyId": "apo", "status": "LOADED", - "updated": "2023-10-26T18:37:11.319169324", + "updated": "2023-10-31T15:33:33.952872639", "version": "2023-10-03" }, { @@ -538,14 +538,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:11.539078486", + "loaded": "2023-10-31T15:33:34.174673621", "message": "", "numberOfIndividuals": 27, "numberOfProperties": 366, "numberOfTerms": 1691, "ontologyId": "apollo_sv", "status": "LOADED", - "updated": "2023-10-26T18:37:11.539078486", + "updated": "2023-10-31T15:33:34.174673621", "version": "2023-01-10" }, { @@ -596,14 +596,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:12.456749532", + "loaded": "2023-10-31T15:33:35.089979281", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 25, "numberOfTerms": 7105, "ontologyId": "aro", "status": "LOADED", - "updated": "2023-10-26T18:37:12.456749532", + "updated": "2023-10-31T15:33:35.089979281", "version": null }, { @@ -668,14 +668,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:30.688065122", + "loaded": "2023-10-31T16:15:26.337442072", "message": "", "numberOfIndividuals": 1, "numberOfProperties": 441, "numberOfTerms": 8787, "ontologyId": "bao", "status": "LOADED", - "updated": "2023-10-26T19:17:30.688065122", + "updated": "2023-10-31T16:15:26.337442072", "version": "2.8.10" }, { @@ -727,14 +727,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:23.955558439", + "loaded": "2023-10-31T16:00:36.071049811", "message": "", "numberOfIndividuals": 46, "numberOfProperties": 171, "numberOfTerms": 2270, "ontologyId": "bcgo", "status": "LOADED", - "updated": "2023-10-26T19:04:23.955558439", + "updated": "2023-10-31T16:00:36.071049811", "version": null }, { @@ -799,14 +799,14 @@ "la" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:48.168998718", + "loaded": "2023-10-31T16:15:44.121851506", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 75, "numberOfTerms": 1184, "ontologyId": "bcio", "status": "LOADED", - "updated": "2023-10-26T19:17:48.168998718", + "updated": "2023-10-31T16:15:44.121851506", "version": null }, { @@ -858,14 +858,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:13.774500557", + "loaded": "2023-10-31T15:33:36.409535185", "message": "", "numberOfIndividuals": 64, "numberOfProperties": 472, "numberOfTerms": 253, "ontologyId": "bco", "status": "LOADED", - "updated": "2023-10-26T18:37:13.774500557", + "updated": "2023-10-31T15:33:36.409535185", "version": "2021-11-14" }, { @@ -916,14 +916,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:13.880865242", + "loaded": "2023-10-31T15:33:36.524900241", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 22, "numberOfTerms": 35, "ontologyId": "bfo", "status": "LOADED", - "updated": "2023-10-26T18:37:13.880865242", + "updated": "2023-10-31T15:33:36.524900241", "version": null }, { @@ -974,14 +974,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:24.382277926", + "loaded": "2023-10-31T16:00:36.523778933", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 114, "ontologyId": "bila", "status": "LOADED", - "updated": "2023-10-26T19:04:24.382277926", + "updated": "2023-10-31T16:00:36.523778933", "version": null }, { @@ -1032,14 +1032,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:13.950578503", + "loaded": "2023-10-31T15:33:36.600374989", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 236, "numberOfTerms": 169, "ontologyId": "bspo", "status": "LOADED", - "updated": "2023-10-26T18:37:13.950578503", + "updated": "2023-10-31T15:33:36.600374989", "version": "2023-05-27" }, { @@ -1095,14 +1095,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:14.483435011", + "loaded": "2023-10-31T15:33:37.140871112", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 37, "numberOfTerms": 6569, "ontologyId": "bto", "status": "LOADED", - "updated": "2023-10-26T18:37:14.483435011", + "updated": "2023-10-31T15:33:37.140871112", "version": null }, { @@ -1158,14 +1158,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:50.795767438", + "loaded": "2023-10-31T16:10:21.198354007", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 45, "numberOfTerms": 445, "ontologyId": "cao", "status": "LOADED", - "updated": "2023-10-26T19:12:50.795767438", + "updated": "2023-10-31T16:10:21.198354007", "version": "0.2" }, { @@ -1216,14 +1216,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:15.924161254", + "loaded": "2023-10-31T15:33:38.578071830", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 279, "numberOfTerms": 720, "ontologyId": "caro", "status": "LOADED", - "updated": "2023-10-26T18:37:15.924161254", + "updated": "2023-10-31T15:33:38.578071830", "version": "2023-03-15" }, { @@ -1286,14 +1286,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:19:25.058377297", + "loaded": "2023-10-31T16:17:23.185966761", "message": "", "numberOfIndividuals": 6987, "numberOfProperties": 238, "numberOfTerms": 8836, "ontologyId": "ccf", "status": "LOADED", - "updated": "2023-10-26T19:19:25.058377297", + "updated": "2023-10-31T16:17:23.185966761", "version": "2.2.1" }, { @@ -1352,14 +1352,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:14:07.773939025", + "loaded": "2023-10-31T16:11:42.906321610", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 12, "numberOfTerms": 277685, "ontologyId": "cco", "status": "LOADED", - "updated": "2023-10-26T19:14:07.773939025", + "updated": "2023-10-31T16:11:42.906321610", "version": null }, { @@ -1410,14 +1410,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:16.342574814", + "loaded": "2023-10-31T15:33:39.003529367", "message": "", "numberOfIndividuals": 26, "numberOfProperties": 139, "numberOfTerms": 164, "ontologyId": "cdao", "status": "LOADED", - "updated": "2023-10-26T18:37:16.342574814", + "updated": "2023-10-31T15:33:39.003529367", "version": null }, { @@ -1468,14 +1468,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:16.933733770", + "loaded": "2023-10-31T15:33:39.589327619", "message": "", "numberOfIndividuals": 44, "numberOfProperties": 259, "numberOfTerms": 2060, "ontologyId": "cdno", "status": "LOADED", - "updated": "2023-10-26T18:37:16.933733770", + "updated": "2023-10-31T15:33:39.589327619", "version": null }, { @@ -1526,14 +1526,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:44.575497429", + "loaded": "2023-10-31T15:58:54.599730571", "message": "", "numberOfIndividuals": 24, "numberOfProperties": 135, "numberOfTerms": 1574, "ontologyId": "ceph", "status": "LOADED", - "updated": "2023-10-26T19:02:44.575497429", + "updated": "2023-10-31T15:58:54.599730571", "version": null }, { @@ -1584,14 +1584,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:37:48.554096271", + "loaded": "2023-10-31T15:34:12.938417397", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 47, "numberOfTerms": 185295, "ontologyId": "chebi", "status": "LOADED", - "updated": "2023-10-26T18:37:48.554096271", + "updated": "2023-10-31T15:34:12.938417397", "version": null }, { @@ -1642,14 +1642,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:34.039513700", + "loaded": "2023-10-31T15:35:00.080272199", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 515, "numberOfTerms": 2116, "ontologyId": "cheminf", "status": "LOADED", - "updated": "2023-10-26T18:38:34.039513700", + "updated": "2023-10-31T15:35:00.080272199", "version": "2.1.0" }, { @@ -1700,14 +1700,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:35.151928709", + "loaded": "2023-10-31T15:35:01.264270311", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 59, "numberOfTerms": 13279, "ontologyId": "chiro", "status": "LOADED", - "updated": "2023-10-26T18:38:35.151928709", + "updated": "2023-10-31T15:35:01.264270311", "version": null }, { @@ -1758,14 +1758,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:37.355527573", + "loaded": "2023-10-31T15:35:03.463023334", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 64, "numberOfTerms": 3101, "ontologyId": "chmo", "status": "LOADED", - "updated": "2023-10-26T18:38:37.355527573", + "updated": "2023-10-31T15:35:03.463023334", "version": null }, { @@ -1816,14 +1816,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:41.921414171", + "loaded": "2023-10-31T15:35:09.703079885", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 17, "numberOfTerms": 44, "ontologyId": "cio", "status": "LOADED", - "updated": "2023-10-26T18:38:41.921414171", + "updated": "2023-10-31T15:35:09.703079885", "version": null }, { @@ -1874,14 +1874,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:44.919804402", + "loaded": "2023-10-31T15:35:12.725970306", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 531, "numberOfTerms": 16147, "ontologyId": "cl", "status": "LOADED", - "updated": "2023-10-26T18:38:44.919804402", + "updated": "2023-10-31T15:35:12.725970306", "version": "2023-10-19" }, { @@ -1935,14 +1935,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:50.067324733", + "loaded": "2023-10-31T15:35:17.966273443", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 42, "numberOfTerms": 1516, "ontologyId": "clao", "status": "LOADED", - "updated": "2023-10-26T18:38:50.067324733", + "updated": "2023-10-31T15:35:17.966273443", "version": "2020-16-05" }, { @@ -1994,14 +1994,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:38:52.946974577", + "loaded": "2023-10-31T15:35:20.917683058", "message": "", "numberOfIndividuals": 26, "numberOfProperties": 392, "numberOfTerms": 43325, "ontologyId": "clo", "status": "LOADED", - "updated": "2023-10-26T18:38:52.946974577", + "updated": "2023-10-31T15:35:20.917683058", "version": "2.1.178" }, { @@ -2060,14 +2060,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:00.139652097", + "loaded": "2023-10-31T15:35:28.069309414", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 9, "numberOfTerms": 265, "ontologyId": "clyh", "status": "LOADED", - "updated": "2023-10-26T18:39:00.139652097", + "updated": "2023-10-31T15:35:28.069309414", "version": null }, { @@ -2110,7 +2110,7 @@ "title": "Clinical measurement ontology", "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues", "version": null, - "versionIri": "http://purl.obolibrary.org/obo/cmo/2.195/cmo.owl" + "versionIri": "http://purl.obolibrary.org/obo/cmo/2.196/cmo.owl" }, "fileHash": null, "lang": "en", @@ -2118,14 +2118,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:00.548551188", + "loaded": "2023-10-31T15:35:28.467024735", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 22, "numberOfTerms": 3963, "ontologyId": "cmo", "status": "LOADED", - "updated": "2023-10-26T18:39:00.548551188", + "updated": "2023-10-31T15:35:28.467024735", "version": null }, { @@ -2184,14 +2184,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:22.578391911", + "loaded": "2023-10-31T16:15:18.006119933", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 76, "numberOfTerms": 1058, "ontologyId": "cmpo", "status": "LOADED", - "updated": "2023-10-26T19:17:22.578391911", + "updated": "2023-10-31T16:15:18.006119933", "version": null }, { @@ -2242,14 +2242,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:01.169848429", + "loaded": "2023-10-31T15:35:29.183675845", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 36, "numberOfTerms": 73, "ontologyId": "cob", "status": "LOADED", - "updated": "2023-10-26T18:39:01.169848429", + "updated": "2023-10-31T15:35:29.183675845", "version": "2023-05-12" }, { @@ -2302,14 +2302,14 @@ "it" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:01.378153999", + "loaded": "2023-10-31T15:35:29.406263114", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 56, "numberOfTerms": 905, "ontologyId": "colao", "status": "LOADED", - "updated": "2023-10-26T18:39:01.378153999", + "updated": "2023-10-31T15:35:29.406263114", "version": "2023-04-08" }, { @@ -2370,14 +2370,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:48.487709141", + "loaded": "2023-10-31T16:15:44.450497869", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 652, "numberOfTerms": 563, "ontologyId": "covoc", "status": "LOADED", - "updated": "2023-10-26T19:17:48.487709141", + "updated": "2023-10-31T16:15:44.450497869", "version": "2022-10-26" }, { @@ -2439,14 +2439,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:19:28.780554128", + "loaded": "2023-10-31T16:17:26.998177912", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 109, "numberOfTerms": 9194, "ontologyId": "cpont", "status": "LOADED", - "updated": "2023-10-26T19:19:28.780554128", + "updated": "2023-10-31T16:17:26.998177912", "version": "2023-09-29" }, { @@ -2497,14 +2497,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:01.756617191", + "loaded": "2023-10-31T15:35:29.864876488", "message": "", "numberOfIndividuals": 42, "numberOfProperties": 73, "numberOfTerms": 145, "ontologyId": "cro", "status": "LOADED", - "updated": "2023-10-26T18:39:01.756617191", + "updated": "2023-10-31T15:35:29.864876488", "version": null }, { @@ -2565,14 +2565,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:51.586829705", + "loaded": "2023-10-31T16:15:47.219372232", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 111, "ontologyId": "cryoem", "status": "LOADED", - "updated": "2023-10-26T19:17:51.586829705", + "updated": "2023-10-31T16:15:47.219372232", "version": "2021-03-09" }, { @@ -2623,14 +2623,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:01.899415757", + "loaded": "2023-10-31T15:35:30.030316870", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 315, "numberOfTerms": 709, "ontologyId": "cteno", "status": "LOADED", - "updated": "2023-10-26T18:39:01.899415757", + "updated": "2023-10-31T15:35:30.030316870", "version": null }, { @@ -2685,14 +2685,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.826911133", + "loaded": "2023-10-31T16:10:22.302193882", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 15, "numberOfTerms": 0, "ontologyId": "dc", "status": "LOADED", - "updated": "2023-10-26T19:12:51.826911133", + "updated": "2023-10-31T16:10:22.302193882", "version": null }, { @@ -2747,14 +2747,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.762918020", + "loaded": "2023-10-31T16:10:22.223632502", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 55, "numberOfTerms": 22, "ontologyId": "dcterms", "status": "LOADED", - "updated": "2023-10-26T19:12:51.762918020", + "updated": "2023-10-31T16:10:22.223632502", "version": null }, { @@ -2805,14 +2805,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:03.319731596", + "loaded": "2023-10-31T15:35:31.567959703", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 26, "numberOfTerms": 135, "ontologyId": "ddanat", "status": "LOADED", - "updated": "2023-10-26T18:39:03.319731596", + "updated": "2023-10-31T15:35:31.567959703", "version": null }, { @@ -2863,14 +2863,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:03.474484891", + "loaded": "2023-10-31T15:35:31.735430025", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 24, "numberOfTerms": 1373, "ontologyId": "ddpheno", "status": "LOADED", - "updated": "2023-10-26T18:39:03.474484891", + "updated": "2023-10-31T15:35:31.735430025", "version": "2023-08-26" }, { @@ -2929,14 +2929,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:56.589952197", + "loaded": "2023-10-31T16:10:28.047652511", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 56, "numberOfTerms": 4720, "ontologyId": "dicom", "status": "LOADED", - "updated": "2023-10-26T19:12:56.589952197", + "updated": "2023-10-31T16:10:28.047652511", "version": "2023d_20230907" }, { @@ -2988,14 +2988,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:03.767688394", + "loaded": "2023-10-31T15:35:32.046726240", "message": "", "numberOfIndividuals": 24, "numberOfProperties": 304, "numberOfTerms": 684, "ontologyId": "dideo", "status": "LOADED", - "updated": "2023-10-26T18:39:03.767688394", + "updated": "2023-10-31T15:35:32.046726240", "version": "2023-10-16" }, { @@ -3046,14 +3046,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:03.946701488", + "loaded": "2023-10-31T15:35:32.239343797", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 11, "numberOfTerms": 13, "ontologyId": "disdriv", "status": "LOADED", - "updated": "2023-10-26T18:39:03.946701488", + "updated": "2023-10-31T15:35:32.239343797", "version": null }, { @@ -3105,14 +3105,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:05.373894611", + "loaded": "2023-10-31T15:35:33.721012396", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 174, "numberOfTerms": 18435, "ontologyId": "doid", "status": "LOADED", - "updated": "2023-10-26T18:39:05.373894611", + "updated": "2023-10-31T15:35:33.721012396", "version": "2023-10-21" }, { @@ -3163,14 +3163,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:08.731306474", + "loaded": "2023-10-31T15:35:36.794516025", "message": "", "numberOfIndividuals": 41, "numberOfProperties": 310, "numberOfTerms": 1422, "ontologyId": "dpo", "status": "LOADED", - "updated": "2023-10-26T18:39:08.731306474", + "updated": "2023-10-31T15:35:36.794516025", "version": "2023-10-19" }, { @@ -3222,14 +3222,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:39:43.099164393", + "loaded": "2023-10-31T15:36:12.127259197", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 273, "numberOfTerms": 679236, "ontologyId": "dron", "status": "LOADED", - "updated": "2023-10-26T18:39:43.099164393", + "updated": "2023-10-31T15:36:12.127259197", "version": "2023-08-17" }, { @@ -3280,14 +3280,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:05.981402668", + "loaded": "2023-10-31T15:38:35.182821798", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 134, "numberOfTerms": 308, "ontologyId": "duo", "status": "LOADED", - "updated": "2023-10-26T18:42:05.981402668", + "updated": "2023-10-31T15:38:35.182821798", "version": null }, { @@ -3338,14 +3338,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:06.119922811", + "loaded": "2023-10-31T15:38:35.329580661", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 169, "numberOfTerms": 496, "ontologyId": "ecao", "status": "LOADED", - "updated": "2023-10-26T18:42:06.119922811", + "updated": "2023-10-31T15:38:35.329580661", "version": null }, { @@ -3396,14 +3396,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:06.653138601", + "loaded": "2023-10-31T15:38:35.962311153", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 91, "numberOfTerms": 3181, "ontologyId": "eco", "status": "LOADED", - "updated": "2023-10-26T18:42:06.653138601", + "updated": "2023-10-31T15:38:35.962311153", "version": null }, { @@ -3454,14 +3454,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:08.334135518", + "loaded": "2023-10-31T15:38:37.679813323", "message": "", "numberOfIndividuals": 17, "numberOfProperties": 483, "numberOfTerms": 5586, "ontologyId": "ecocore", "status": "LOADED", - "updated": "2023-10-26T18:42:08.334135518", + "updated": "2023-10-31T15:38:37.679813323", "version": "2022-03-09" }, { @@ -3524,14 +3524,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:12.292971898", + "loaded": "2023-10-31T15:38:41.639569842", "message": "", "numberOfIndividuals": 60, "numberOfProperties": 480, "numberOfTerms": 11864, "ontologyId": "ecto", "status": "LOADED", - "updated": "2023-10-26T18:42:12.292971898", + "updated": "2023-10-31T15:38:41.639569842", "version": "2023-02-14" }, { @@ -3597,14 +3597,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:13:26.598218776", + "loaded": "2023-10-31T16:10:57.764322633", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 77, "numberOfTerms": 3473, "ontologyId": "edam", "status": "LOADED", - "updated": "2023-10-26T19:13:26.598218776", + "updated": "2023-10-31T16:10:57.764322633", "version": null }, { @@ -3670,14 +3670,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:13:07.392851782", + "loaded": "2023-10-31T16:10:39.245566271", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 224, "numberOfTerms": 50812, "ontologyId": "efo", "status": "LOADED", - "updated": "2023-10-26T19:13:07.392851782", + "updated": "2023-10-31T16:10:39.245566271", "version": "3.59.0" }, { @@ -3728,14 +3728,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:45.160637762", + "loaded": "2023-10-31T15:58:55.200996484", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 27, "numberOfTerms": 2734, "ontologyId": "ehdaa2", "status": "LOADED", - "updated": "2023-10-26T19:02:45.160637762", + "updated": "2023-10-31T15:58:55.200996484", "version": null }, { @@ -3786,14 +3786,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:27.492973824", + "loaded": "2023-10-31T16:00:39.777059645", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 10, "numberOfTerms": 19444, "ontologyId": "emap", "status": "LOADED", - "updated": "2023-10-26T19:04:27.492973824", + "updated": "2023-10-31T16:00:39.777059645", "version": null }, { @@ -3844,14 +3844,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:16.353780625", + "loaded": "2023-10-31T15:38:45.801520796", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 26, "numberOfTerms": 8774, "ontologyId": "emapa", "status": "LOADED", - "updated": "2023-10-26T18:42:16.353780625", + "updated": "2023-10-31T15:38:45.801520796", "version": null }, { @@ -3925,14 +3925,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:24.300048384", + "loaded": "2023-10-31T16:15:19.880591266", "message": "", "numberOfIndividuals": 834, "numberOfProperties": 2384, "numberOfTerms": 25917, "ontologyId": "enm", "status": "LOADED", - "updated": "2023-10-26T19:17:24.300048384", + "updated": "2023-10-31T16:15:19.880591266", "version": "10.0" }, { @@ -3991,14 +3991,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:57.351061952", + "loaded": "2023-10-31T16:10:28.786380305", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 5, "numberOfTerms": 377, "ontologyId": "ensemblglossary", "status": "LOADED", - "updated": "2023-10-26T19:12:57.351061952", + "updated": "2023-10-31T16:10:28.786380305", "version": null }, { @@ -4055,14 +4055,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:18.271363985", + "loaded": "2023-10-31T15:38:47.689773619", "message": "", "numberOfIndividuals": 44, "numberOfProperties": 314, "numberOfTerms": 6996, "ontologyId": "envo", "status": "LOADED", - "updated": "2023-10-26T18:42:18.271363985", + "updated": "2023-10-31T15:38:47.689773619", "version": "2023-02-13" }, { @@ -4113,14 +4113,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:19.694802542", + "loaded": "2023-10-31T15:38:49.073241324", "message": "", "numberOfIndividuals": 1, "numberOfProperties": 133, "numberOfTerms": 1916, "ontologyId": "epio", "status": "LOADED", - "updated": "2023-10-26T18:42:19.694802542", + "updated": "2023-10-31T15:38:49.073241324", "version": "2021-05-28" }, { @@ -4173,14 +4173,14 @@ "pt" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:20.285680780", + "loaded": "2023-10-31T15:38:49.659865541", "message": "", "numberOfIndividuals": 92, "numberOfProperties": 205, "numberOfTerms": 5109, "ontologyId": "eupath", "status": "LOADED", - "updated": "2023-10-26T18:42:20.285680780", + "updated": "2023-10-31T15:38:49.659865541", "version": "2023-05-30" }, { @@ -4231,14 +4231,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:21.045312264", + "loaded": "2023-10-31T15:38:50.404186611", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 23, "numberOfTerms": 152, "ontologyId": "exo", "status": "LOADED", - "updated": "2023-10-26T18:42:21.045312264", + "updated": "2023-10-31T15:38:50.404186611", "version": "2022-06-29" }, { @@ -4289,14 +4289,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:21.113314179", + "loaded": "2023-10-31T15:38:50.473731174", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 36, "numberOfTerms": 121, "ontologyId": "fao", "status": "LOADED", - "updated": "2023-10-26T18:42:21.113314179", + "updated": "2023-10-31T15:38:50.473731174", "version": null }, { @@ -4347,14 +4347,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:37.447282890", + "loaded": "2023-10-31T15:58:46.950538415", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 140, "numberOfTerms": 647, "ontologyId": "fbbi", "status": "LOADED", - "updated": "2023-10-26T19:02:37.447282890", + "updated": "2023-10-31T15:58:46.950538415", "version": null }, { @@ -4405,14 +4405,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:25.099581621", + "loaded": "2023-10-31T15:38:54.447812732", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 347, "numberOfTerms": 21121, "ontologyId": "fbbt", "status": "LOADED", - "updated": "2023-10-26T18:42:25.099581621", + "updated": "2023-10-31T15:38:54.447812732", "version": "2023-10-18" }, { @@ -4463,14 +4463,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:34.006367428", + "loaded": "2023-10-31T15:39:03.278061839", "message": "", "numberOfIndividuals": 1, "numberOfProperties": 239, "numberOfTerms": 2296, "ontologyId": "fbcv", "status": "LOADED", - "updated": "2023-10-26T18:42:34.006367428", + "updated": "2023-10-31T15:39:03.278061839", "version": "2023-10-19" }, { @@ -4521,14 +4521,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:34.588801203", + "loaded": "2023-10-31T15:39:03.881014321", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 211, "numberOfTerms": 253, "ontologyId": "fbdv", "status": "LOADED", - "updated": "2023-10-26T18:42:34.588801203", + "updated": "2023-10-31T15:39:03.881014321", "version": "2023-10-18" }, { @@ -4579,14 +4579,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:35.520226684", + "loaded": "2023-10-31T16:00:43.851669460", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 6600, "ontologyId": "fbsp", "status": "LOADED", - "updated": "2023-10-26T19:04:35.520226684", + "updated": "2023-10-31T16:00:43.851669460", "version": null }, { @@ -4637,14 +4637,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:34.880143305", + "loaded": "2023-10-31T15:39:04.197979686", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 13, "numberOfTerms": 3548, "ontologyId": "fideo", "status": "LOADED", - "updated": "2023-10-26T18:42:34.880143305", + "updated": "2023-10-31T15:39:04.197979686", "version": null }, { @@ -4695,14 +4695,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:32.886619287", + "loaded": "2023-10-31T15:58:42.740516734", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 15, "numberOfTerms": 1163, "ontologyId": "fix", "status": "LOADED", - "updated": "2023-10-26T19:02:32.886619287", + "updated": "2023-10-31T15:58:42.740516734", "version": null }, { @@ -4753,14 +4753,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:38.768216056", + "loaded": "2023-10-31T15:39:08.149537588", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 737, "numberOfTerms": 36818, "ontologyId": "flopo", "status": "LOADED", - "updated": "2023-10-26T18:42:38.768216056", + "updated": "2023-10-31T15:39:08.149537588", "version": null }, { @@ -4811,14 +4811,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:49.473811533", + "loaded": "2023-10-31T15:58:59.387437634", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 15, "numberOfTerms": 78977, "ontologyId": "fma", "status": "LOADED", - "updated": "2023-10-26T19:02:49.473811533", + "updated": "2023-10-31T15:58:59.387437634", "version": null }, { @@ -4870,14 +4870,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:45.170801712", + "loaded": "2023-10-31T15:39:14.470893208", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 29, "numberOfTerms": 1799, "ontologyId": "fobi", "status": "LOADED", - "updated": "2023-10-26T18:42:45.170801712", + "updated": "2023-10-31T15:39:14.470893208", "version": null }, { @@ -4992,14 +4992,14 @@ "zu" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:47.613761752", + "loaded": "2023-10-31T15:39:16.965810899", "message": "", "numberOfIndividuals": 435, "numberOfProperties": 130, "numberOfTerms": 35183, "ontologyId": "foodon", "status": "LOADED", - "updated": "2023-10-26T18:42:47.613761752", + "updated": "2023-10-31T15:39:16.965810899", "version": null }, { @@ -5050,14 +5050,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:42:54.844448690", + "loaded": "2023-10-31T15:39:24.266685378", "message": "", "numberOfIndividuals": 27, "numberOfProperties": 578, "numberOfTerms": 11321, "ontologyId": "fovt", "status": "LOADED", - "updated": "2023-10-26T18:42:54.844448690", + "updated": "2023-10-31T15:39:24.266685378", "version": "2023-05-31" }, { @@ -5108,14 +5108,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:02.421740752", + "loaded": "2023-10-31T15:39:32.242002721", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 292, "numberOfTerms": 16523, "ontologyId": "fypo", "status": "LOADED", - "updated": "2023-10-26T18:43:02.421740752", + "updated": "2023-10-31T15:39:32.242002721", "version": "2023-10-06" }, { @@ -5187,14 +5187,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:03:28.743450580", + "loaded": "2023-10-31T15:59:39.919584726", "message": "", "numberOfIndividuals": 661037, "numberOfProperties": 338, "numberOfTerms": 17140, "ontologyId": "gaz", "status": "LOADED", - "updated": "2023-10-26T19:03:28.743450580", + "updated": "2023-10-31T15:59:39.919584726", "version": null }, { @@ -5245,14 +5245,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:09.328746315", + "loaded": "2023-10-31T15:39:38.951500738", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 17, "numberOfTerms": 154, "ontologyId": "gecko", "status": "LOADED", - "updated": "2023-10-26T18:43:09.328746315", + "updated": "2023-10-31T15:39:38.951500738", "version": null }, { @@ -5315,14 +5315,14 @@ "tr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:09.819466535", + "loaded": "2023-10-31T15:39:39.512225520", "message": "", "numberOfIndividuals": 960, "numberOfProperties": 298, "numberOfTerms": 7736, "ontologyId": "genepio", "status": "LOADED", - "updated": "2023-10-26T18:43:09.819466535", + "updated": "2023-10-31T15:39:39.512225520", "version": null }, { @@ -5373,14 +5373,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:10.859478659", + "loaded": "2023-10-31T15:39:40.551396785", "message": "", "numberOfIndividuals": 21, "numberOfProperties": 208, "numberOfTerms": 424, "ontologyId": "geno", "status": "LOADED", - "updated": "2023-10-26T18:43:10.859478659", + "updated": "2023-10-31T15:39:40.551396785", "version": "2023-10-08" }, { @@ -5432,14 +5432,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:10.968693816", + "loaded": "2023-10-31T15:39:40.661242382", "message": "", "numberOfIndividuals": 4, "numberOfProperties": 110, "numberOfTerms": 107, "ontologyId": "geo", "status": "LOADED", - "updated": "2023-10-26T18:43:10.968693816", + "updated": "2023-10-31T15:39:40.661242382", "version": "production version 2016-03-26" }, { @@ -5498,14 +5498,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:06.485097396", + "loaded": "2023-10-31T16:15:00.825799624", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 12, "numberOfTerms": 166254, "ontologyId": "gexo", "status": "LOADED", - "updated": "2023-10-26T19:17:06.485097396", + "updated": "2023-10-31T16:15:00.825799624", "version": null }, { @@ -5556,14 +5556,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:19.997562676", + "loaded": "2023-10-31T15:39:49.579239875", "message": "", "numberOfIndividuals": 5, "numberOfProperties": 14, "numberOfTerms": 161715, "ontologyId": "gno", "status": "LOADED", - "updated": "2023-10-26T18:43:19.997562676", + "updated": "2023-10-31T15:39:49.579239875", "version": "V1.12.2" }, { @@ -5614,14 +5614,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:43:49.440275759", + "loaded": "2023-10-31T15:40:20.174255299", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 362, "numberOfTerms": 84282, "ontologyId": "go", "status": "LOADED", - "updated": "2023-10-26T18:43:49.440275759", + "updated": "2023-10-31T15:40:20.174255299", "version": "2023-10-09" }, { @@ -5750,14 +5750,14 @@ "zun" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:03.288914663", + "loaded": "2023-10-31T15:58:14.300076826", "message": "", "numberOfIndividuals": 3004, "numberOfProperties": 292, "numberOfTerms": 13192, "ontologyId": "gsso", "status": "LOADED", - "updated": "2023-10-26T19:02:03.288914663", + "updated": "2023-10-31T15:58:14.300076826", "version": null }, { @@ -5808,14 +5808,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:08.757805107", + "loaded": "2023-10-31T15:40:41.111427921", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 179, "numberOfTerms": 611, "ontologyId": "hancestro", "status": "LOADED", - "updated": "2023-10-26T18:44:08.757805107", + "updated": "2023-10-31T15:40:41.111427921", "version": "2023-10-13" }, { @@ -5866,14 +5866,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:09.241987646", + "loaded": "2023-10-31T15:40:41.596231498", "message": "", "numberOfIndividuals": 2764, "numberOfProperties": 21, "numberOfTerms": 2597, "ontologyId": "hao", "status": "LOADED", - "updated": "2023-10-26T18:44:09.241987646", + "updated": "2023-10-31T15:40:41.596231498", "version": "2023-06-01" }, { @@ -5932,14 +5932,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:40.144350548", + "loaded": "2023-10-31T16:15:35.889127478", "message": "", "numberOfIndividuals": 31, "numberOfProperties": 711, "numberOfTerms": 22606, "ontologyId": "hcao", "status": "LOADED", - "updated": "2023-10-26T19:17:40.144350548", + "updated": "2023-10-31T16:15:35.889127478", "version": null }, { @@ -5990,14 +5990,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:10.056176852", + "loaded": "2023-10-31T15:40:42.384283565", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 18, "numberOfTerms": 66, "ontologyId": "hom", "status": "LOADED", - "updated": "2023-10-26T18:44:10.056176852", + "updated": "2023-10-31T15:40:42.384283565", "version": null }, { @@ -6058,14 +6058,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:15.681979299", + "loaded": "2023-10-31T15:58:26.810214327", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 549, "numberOfTerms": 30008, "ontologyId": "hp", "status": "LOADED", - "updated": "2023-10-26T19:02:15.681979299", + "updated": "2023-10-31T15:58:26.810214327", "version": "2023-10-09" }, { @@ -6116,14 +6116,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:10.130739116", + "loaded": "2023-10-31T15:40:42.470523120", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 41, "numberOfTerms": 259, "ontologyId": "hsapdv", "status": "LOADED", - "updated": "2023-10-26T18:44:10.130739116", + "updated": "2023-10-31T15:40:42.470523120", "version": null }, { @@ -6181,14 +6181,14 @@ "ja" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:10.301620827", + "loaded": "2023-10-31T15:40:42.640651676", "message": "", "numberOfIndividuals": 192, "numberOfProperties": 303, "numberOfTerms": 448, "ontologyId": "hso", "status": "LOADED", - "updated": "2023-10-26T18:44:10.301620827", + "updated": "2023-10-31T15:40:42.640651676", "version": null }, { @@ -6240,14 +6240,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:10.529261513", + "loaded": "2023-10-31T15:40:42.869492539", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 424, "numberOfTerms": 603, "ontologyId": "htn", "status": "LOADED", - "updated": "2023-10-26T18:44:10.529261513", + "updated": "2023-10-31T15:40:42.869492539", "version": null }, { @@ -6298,14 +6298,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:10.697334039", + "loaded": "2023-10-31T15:40:43.033155575", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 127, "numberOfTerms": 263, "ontologyId": "iao", "status": "LOADED", - "updated": "2023-10-26T18:44:10.697334039", + "updated": "2023-10-31T15:40:43.033155575", "version": "2022-11-07" }, { @@ -6358,14 +6358,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:12.842682341", + "loaded": "2023-10-31T15:40:45.190984928", "message": "", "numberOfIndividuals": 6, "numberOfProperties": 133, "numberOfTerms": 30914, "ontologyId": "iceo", "status": "LOADED", - "updated": "2023-10-26T18:44:12.842682341", + "updated": "2023-10-31T15:40:45.190984928", "version": "2.1" }, { @@ -6417,14 +6417,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:17.921085066", + "loaded": "2023-10-31T15:40:50.278642331", "message": "", "numberOfIndividuals": 26, "numberOfProperties": 187, "numberOfTerms": 963, "ontologyId": "ico", "status": "LOADED", - "updated": "2023-10-26T18:44:17.921085066", + "updated": "2023-10-31T15:40:50.278642331", "version": "1.0.187" }, { @@ -6475,14 +6475,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:18.127431619", + "loaded": "2023-10-31T15:40:50.488481795", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 104, "numberOfTerms": 518, "ontologyId": "ido", "status": "LOADED", - "updated": "2023-10-26T18:44:18.127431619", + "updated": "2023-10-31T15:40:50.488481795", "version": "2017-11-03" }, { @@ -6543,14 +6543,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:47.747204335", + "loaded": "2023-10-31T16:15:43.761109211", "message": "", "numberOfIndividuals": 23, "numberOfProperties": 110, "numberOfTerms": 485, "ontologyId": "idocovid19", "status": "LOADED", - "updated": "2023-10-26T19:17:47.747204335", + "updated": "2023-10-31T16:15:43.761109211", "version": null }, { @@ -6601,14 +6601,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:18.361946927", + "loaded": "2023-10-31T16:00:30.400135439", "message": "", "numberOfIndividuals": 595, "numberOfProperties": 46, "numberOfTerms": 3158, "ontologyId": "idomal", "status": "LOADED", - "updated": "2023-10-26T19:04:18.361946927", + "updated": "2023-10-31T16:00:30.400135439", "version": null }, { @@ -6660,14 +6660,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:18.280828501", + "loaded": "2023-10-31T15:40:50.640467242", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 124, "numberOfTerms": 328, "ontologyId": "ino", "status": "LOADED", - "updated": "2023-10-26T18:44:18.280828501", + "updated": "2023-10-31T15:40:50.640467242", "version": "1.1.13" }, { @@ -6721,14 +6721,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:31.799142142", + "loaded": "2023-10-31T15:58:41.743409578", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 19, "numberOfTerms": 510, "ontologyId": "kisao", "status": "LOADED", - "updated": "2023-10-26T19:02:31.799142142", + "updated": "2023-10-31T15:58:41.743409578", "version": "2.30" }, { @@ -6780,14 +6780,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:18.380575996", + "loaded": "2023-10-31T15:40:50.740806306", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 78, "numberOfTerms": 169, "ontologyId": "labo", "status": "LOADED", - "updated": "2023-10-26T18:44:18.380575996", + "updated": "2023-10-31T15:40:50.740806306", "version": "2021-06-08" }, { @@ -6839,16 +6839,78 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:18.603032786", + "loaded": "2023-10-31T15:40:50.960765481", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 84, "numberOfTerms": 822, "ontologyId": "lepao", "status": "LOADED", - "updated": "2023-10-26T18:44:18.603032786", + "updated": "2023-10-31T15:40:50.960765481", "version": "2022-12-29" }, + { + "_links": { + "individuals": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/lipidmaps/individuals" + }, + "properties": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/lipidmaps/properties" + }, + "self": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/lipidmaps?lang=en" + }, + "terms": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/lipidmaps/terms" + } + }, + "baseUris": [ + "https://www.lipidmaps.org/rdf/" + ], + "config": { + "allowDownload": false, + "annotations": null, + "baseUris": [ + "https://www.lipidmaps.org/rdf/" + ], + "creators": [], + "definitionProperties": [], + "description": null, + "fileLocation": "https://lipidmaps.org/files/?file=sparql_lipids&ext=ttl", + "hiddenProperties": [], + "hierarchicalProperties": [], + "homepage": "https://lipidmaps.org", + "id": "lipidmaps", + "isSkos": false, + "labelProperty": "http://www.w3.org/2000/01/rdf-schema#label", + "logo": null, + "mailingList": null, + "namespace": "lipidmaps", + "oboSlims": false, + "preferredPrefix": "LIPIDMAPS", + "preferredRootTerms": [], + "synonymProperties": [], + "title": "LIPID MAPS", + "tracker": null, + "version": null, + "versionIri": null + }, + "fileHash": null, + "lang": "en", + "languages": [ + "en" + ], + "loadAttempts": 0, + "loaded": "2023-10-31T16:10:16.964607435", + "message": "", + "numberOfIndividuals": 0, + "numberOfProperties": 0, + "numberOfTerms": 48276, + "ontologyId": "lipidmaps", + "status": "LOADED", + "updated": "2023-10-31T16:10:16.964607435", + "version": null + }, { "_links": { "individuals": { @@ -6897,14 +6959,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:19.091996911", + "loaded": "2023-10-31T15:40:51.470021012", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 15, "numberOfTerms": 3257, "ontologyId": "ma", "status": "LOADED", - "updated": "2023-10-26T18:44:19.091996911", + "updated": "2023-10-31T15:40:51.470021012", "version": null }, { @@ -6958,14 +7020,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:22.148510631", + "loaded": "2023-10-31T15:40:54.525270976", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 534, "numberOfTerms": 13881, "ontologyId": "maxo", "status": "LOADED", - "updated": "2023-10-26T18:44:22.148510631", + "updated": "2023-10-31T15:40:54.525270976", "version": "2023-10-03" }, { @@ -7017,14 +7079,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:27.734645869", + "loaded": "2023-10-31T15:41:00.162878357", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 108, "numberOfTerms": 3383, "ontologyId": "mco", "status": "LOADED", - "updated": "2023-10-26T18:44:27.734645869", + "updated": "2023-10-31T15:41:00.162878357", "version": null }, { @@ -7075,14 +7137,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:29.107741358", + "loaded": "2023-10-31T15:41:01.587633882", "message": "", "numberOfIndividuals": 24, "numberOfProperties": 338, "numberOfTerms": 966, "ontologyId": "mcro", "status": "LOADED", - "updated": "2023-10-26T18:44:29.107741358", + "updated": "2023-10-31T15:41:01.587633882", "version": "2023-03-07" }, { @@ -7133,14 +7195,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:29.306594346", + "loaded": "2023-10-31T15:41:01.779474041", "message": "", "numberOfIndividuals": 19, "numberOfProperties": 90, "numberOfTerms": 400, "ontologyId": "mf", "status": "LOADED", - "updated": "2023-10-26T18:44:29.306594346", + "updated": "2023-10-31T15:41:01.779474041", "version": "2022-07-19" }, { @@ -7191,14 +7253,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:37.625967851", + "loaded": "2023-10-31T15:58:47.170277171", "message": "", "numberOfIndividuals": 52, "numberOfProperties": 827, "numberOfTerms": 261, "ontologyId": "mfmo", "status": "LOADED", - "updated": "2023-10-26T19:02:37.625967851", + "updated": "2023-10-31T15:58:47.170277171", "version": null }, { @@ -7252,14 +7314,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:29.450672949", + "loaded": "2023-10-31T15:41:01.920344961", "message": "", "numberOfIndividuals": 19, "numberOfProperties": 99, "numberOfTerms": 619, "ontologyId": "mfoem", "status": "LOADED", - "updated": "2023-10-26T18:44:29.450672949", + "updated": "2023-10-31T15:41:01.920344961", "version": "2022-07-19" }, { @@ -7311,14 +7373,14 @@ "es" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:29.720547970", + "loaded": "2023-10-31T15:41:02.188784179", "message": "", "numberOfIndividuals": 73, "numberOfProperties": 378, "numberOfTerms": 1172, "ontologyId": "mfomd", "status": "LOADED", - "updated": "2023-10-26T18:44:29.720547970", + "updated": "2023-10-31T15:41:02.188784179", "version": "2020-04-26" }, { @@ -7371,14 +7433,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:30.060529709", + "loaded": "2023-10-31T15:41:02.525613031", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 45, "numberOfTerms": 1635, "ontologyId": "mi", "status": "LOADED", - "updated": "2023-10-26T18:44:30.060529709", + "updated": "2023-10-31T15:41:02.525613031", "version": null }, { @@ -7429,14 +7491,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:30.391736946", + "loaded": "2023-10-31T15:41:02.863594118", "message": "", "numberOfIndividuals": 38, "numberOfProperties": 229, "numberOfTerms": 238, "ontologyId": "miapa", "status": "LOADED", - "updated": "2023-10-26T18:44:30.391736946", + "updated": "2023-10-31T15:41:02.863594118", "version": null }, { @@ -7490,14 +7552,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:40.232679534", + "loaded": "2023-10-31T15:58:49.874923241", "message": "", "numberOfIndividuals": 19, "numberOfProperties": 605, "numberOfTerms": 19246, "ontologyId": "micro", "status": "LOADED", - "updated": "2023-10-26T19:02:40.232679534", + "updated": "2023-10-31T15:58:49.874923241", "version": "MicrO (An Ontology of Prokaryotic Phenotypic and Metabolic Characters). Version 1.5.1 released 6/14/2018.\n\nIncludes terms and term synonyms extracted from > 3000 prokaryotic taxonomic descriptions, collected from a large number of taxonomic descriptions from Archaea, Cyanobacteria, Bacteroidetes, Firmicutes and Mollicutes.\n\nThe ontology and the synonym lists were developed to facilitate the automated extraction of phenotypic data and character states from prokaryotic taxonomic descriptions using a natural language processing algorithm (MicroPIE). MicroPIE was developed by Hong Cui, Elvis Hsin-Hui Wu, and Jin Mao (University of Arizona) in collaboration with Carrine E. Blank (University of Montana) and Lisa R. Moore (University of Southern Maine).\n\nDescriptions and links to MicroPIE can be found at http://avatol.org/ngp/nlp/overview-2/.\nhttps://github.com/biosemantics/micropie2\n\nThe most current version of MicrO can be downloaded from https://github.com/carrineblank/MicrO." }, { @@ -7548,14 +7610,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:19.239700980", + "loaded": "2023-10-31T16:00:31.307496036", "message": "", "numberOfIndividuals": 126, "numberOfProperties": 40, "numberOfTerms": 4409, "ontologyId": "miro", "status": "LOADED", - "updated": "2023-10-26T19:04:19.239700980", + "updated": "2023-10-31T16:00:31.307496036", "version": null }, { @@ -7598,7 +7660,7 @@ "title": "Measurement method ontology", "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues", "version": null, - "versionIri": "http://purl.obolibrary.org/obo/mmo/2.117/mmo.owl" + "versionIri": "http://purl.obolibrary.org/obo/mmo/2.118/mmo.owl" }, "fileHash": null, "lang": "en", @@ -7606,14 +7668,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:30.566344937", + "loaded": "2023-10-31T15:41:03.008051312", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 26, "numberOfTerms": 862, "ontologyId": "mmo", "status": "LOADED", - "updated": "2023-10-26T18:44:30.566344937", + "updated": "2023-10-31T15:41:03.008051312", "version": null }, { @@ -7664,14 +7726,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:30.733875417", + "loaded": "2023-10-31T15:41:03.205427165", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 38, "numberOfTerms": 178, "ontologyId": "mmusdv", "status": "LOADED", - "updated": "2023-10-26T18:44:30.733875417", + "updated": "2023-10-31T15:41:03.205427165", "version": null }, { @@ -7722,14 +7784,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:31.367865850", + "loaded": "2023-10-31T15:41:03.810359395", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 47, "numberOfTerms": 2098, "ontologyId": "mod", "status": "LOADED", - "updated": "2023-10-26T18:44:31.367865850", + "updated": "2023-10-31T15:41:03.810359395", "version": null }, { @@ -7780,14 +7842,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:42.433376704", + "loaded": "2023-10-31T15:41:14.867898078", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 473, "numberOfTerms": 51209, "ontologyId": "mondo", "status": "LOADED", - "updated": "2023-10-26T18:44:42.433376704", + "updated": "2023-10-31T15:41:14.867898078", "version": null }, { @@ -7838,14 +7900,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:44:57.073909101", + "loaded": "2023-10-31T15:41:29.898135284", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 38, "numberOfTerms": 3686, "ontologyId": "mop", "status": "LOADED", - "updated": "2023-10-26T18:44:57.073909101", + "updated": "2023-10-31T15:41:29.898135284", "version": null }, { @@ -7896,14 +7958,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:03.232683262", + "loaded": "2023-10-31T15:41:36.044179053", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 601, "numberOfTerms": 33838, "ontologyId": "mp", "status": "LOADED", - "updated": "2023-10-26T18:45:03.232683262", + "updated": "2023-10-31T15:41:36.044179053", "version": null }, { @@ -7954,14 +8016,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:12.997720754", + "loaded": "2023-10-31T15:41:45.711429864", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 22, "numberOfTerms": 891, "ontologyId": "mpath", "status": "LOADED", - "updated": "2023-10-26T18:45:12.997720754", + "updated": "2023-10-31T15:41:45.711429864", "version": null }, { @@ -8013,14 +8075,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:13.151604075", + "loaded": "2023-10-31T15:41:45.879705772", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 67, "numberOfTerms": 51, "ontologyId": "mpio", "status": "LOADED", - "updated": "2023-10-26T18:45:13.151604075", + "updated": "2023-10-31T15:41:45.879705772", "version": "2023-10-17" }, { @@ -8071,14 +8133,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:17.600113217", + "loaded": "2023-10-31T15:41:50.296343810", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 41, "numberOfTerms": 51390, "ontologyId": "mro", "status": "LOADED", - "updated": "2023-10-26T18:45:17.600113217", + "updated": "2023-10-31T15:41:50.296343810", "version": "2023-08-05" }, { @@ -8131,14 +8193,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:26.986549659", + "loaded": "2023-10-31T15:41:59.697098635", "message": "", "numberOfIndividuals": 14, "numberOfProperties": 681, "numberOfTerms": 15057, "ontologyId": "ms", "status": "LOADED", - "updated": "2023-10-26T18:45:26.986549659", + "updated": "2023-10-31T15:41:59.697098635", "version": null }, { @@ -8199,14 +8261,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:52.599560394", + "loaded": "2023-10-31T16:10:23.468359602", "message": "", "numberOfIndividuals": 33, "numberOfProperties": 133, "numberOfTerms": 1294, "ontologyId": "msio", "status": "LOADED", - "updated": "2023-10-26T19:12:52.599560394", + "updated": "2023-10-31T16:10:23.468359602", "version": "1.0.1" }, { @@ -8257,14 +8319,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:45:30.750875923", + "loaded": "2023-10-31T15:42:03.509262025", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 326, "numberOfTerms": 4546, "ontologyId": "nbo", "status": "LOADED", - "updated": "2023-10-26T18:45:30.750875923", + "updated": "2023-10-31T15:42:03.509262025", "version": "2023-07-04" }, { @@ -8319,14 +8381,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:46:56.754665966", + "loaded": "2023-10-31T15:43:29.545358773", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 30, "numberOfTerms": 2523759, "ontologyId": "ncbitaxon", "status": "LOADED", - "updated": "2023-10-26T18:46:56.754665966", + "updated": "2023-10-31T15:43:29.545358773", "version": null }, { @@ -8377,14 +8439,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:53:03.100015299", + "loaded": "2023-10-31T15:49:29.441517033", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 248, "numberOfTerms": 187148, "ontologyId": "ncit", "status": "LOADED", - "updated": "2023-10-26T18:53:03.100015299", + "updated": "2023-10-31T15:49:29.441517033", "version": "23.09d" }, { @@ -8435,14 +8497,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:02.346285528", + "loaded": "2023-10-31T15:50:25.274453239", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 66, "numberOfTerms": 3078, "ontologyId": "ncro", "status": "LOADED", - "updated": "2023-10-26T18:54:02.346285528", + "updated": "2023-10-31T15:50:25.274453239", "version": null }, { @@ -8494,14 +8556,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:02.805458868", + "loaded": "2023-10-31T15:50:25.737576006", "message": "", "numberOfIndividuals": 2, "numberOfProperties": 252, "numberOfTerms": 1514, "ontologyId": "ngbo", "status": "LOADED", - "updated": "2023-10-26T18:54:02.805458868", + "updated": "2023-10-31T15:50:25.737576006", "version": "2022-10-05" }, { @@ -8564,14 +8626,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:34.211827404", + "loaded": "2023-10-31T16:15:29.837328241", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 46, "numberOfTerms": 792, "ontologyId": "nmrcv", "status": "LOADED", - "updated": "2023-10-26T19:17:34.211827404", + "updated": "2023-10-31T16:15:29.837328241", "version": "1.1.0" }, { @@ -8622,14 +8684,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:03.047591912", + "loaded": "2023-10-31T15:50:25.976980149", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 122, "numberOfTerms": 263, "ontologyId": "nomen", "status": "LOADED", - "updated": "2023-10-26T18:54:03.047591912", + "updated": "2023-10-31T15:50:25.976980149", "version": null }, { @@ -8681,14 +8743,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:03.762149951", + "loaded": "2023-10-31T15:50:26.708779030", "message": "", "numberOfIndividuals": 4, "numberOfProperties": 236, "numberOfTerms": 10589, "ontologyId": "oae", "status": "LOADED", - "updated": "2023-10-26T18:54:03.762149951", + "updated": "2023-10-31T15:50:26.708779030", "version": "1.2.47" }, { @@ -8739,14 +8801,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:05.262520502", + "loaded": "2023-10-31T15:50:28.169266444", "message": "", "numberOfIndividuals": 323, "numberOfProperties": 19, "numberOfTerms": 308, "ontologyId": "oarcs", "status": "LOADED", - "updated": "2023-10-26T18:54:05.262520502", + "updated": "2023-10-31T15:50:28.169266444", "version": "2019-04-18" }, { @@ -8799,14 +8861,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:11.644647431", + "loaded": "2023-10-31T15:50:34.564218630", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 463, "numberOfTerms": 62843, "ontologyId": "oba", "status": "LOADED", - "updated": "2023-10-26T18:54:11.644647431", + "updated": "2023-10-31T15:50:34.564218630", "version": "2023-10-18" }, { @@ -8858,14 +8920,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:25.429183870", + "loaded": "2023-10-31T15:50:48.094360398", "message": "", "numberOfIndividuals": 25, "numberOfProperties": 75, "numberOfTerms": 810, "ontologyId": "obcs", "status": "LOADED", - "updated": "2023-10-26T18:54:25.429183870", + "updated": "2023-10-31T15:50:48.094360398", "version": "101" }, { @@ -8918,14 +8980,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:26.015665927", + "loaded": "2023-10-31T15:50:48.686018669", "message": "", "numberOfIndividuals": 306, "numberOfProperties": 176, "numberOfTerms": 4904, "ontologyId": "obi", "status": "LOADED", - "updated": "2023-10-26T18:54:26.015665927", + "updated": "2023-10-31T15:50:48.686018669", "version": "2023-09-20" }, { @@ -8976,14 +9038,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:27.108243483", + "loaded": "2023-10-31T15:50:49.774939547", "message": "", "numberOfIndividuals": 226, "numberOfProperties": 172, "numberOfTerms": 1803, "ontologyId": "obib", "status": "LOADED", - "updated": "2023-10-26T18:54:27.108243483", + "updated": "2023-10-31T15:50:49.774939547", "version": "2023-04-05" }, { @@ -9034,14 +9096,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:41.975337561", + "loaded": "2023-10-31T15:51:05.045386250", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 125, "numberOfTerms": 69688, "ontologyId": "ogg", "status": "LOADED", - "updated": "2023-10-26T18:54:41.975337561", + "updated": "2023-10-31T15:51:05.045386250", "version": "Vision Release: 1.0.59" }, { @@ -9092,14 +9154,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:51.056272493", + "loaded": "2023-10-31T15:51:14.130361781", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 59, "numberOfTerms": 186, "ontologyId": "ogms", "status": "LOADED", - "updated": "2023-10-26T18:54:51.056272493", + "updated": "2023-10-31T15:51:14.130361781", "version": "2021-08-19" }, { @@ -9150,14 +9212,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:43.589004076", + "loaded": "2023-10-31T15:58:53.354698620", "message": "", "numberOfIndividuals": 57, "numberOfProperties": 215, "numberOfTerms": 406, "ontologyId": "ogsf", "status": "LOADED", - "updated": "2023-10-26T19:02:43.589004076", + "updated": "2023-10-31T15:58:53.354698620", "version": "2.0" }, { @@ -9209,14 +9271,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:51.319695920", + "loaded": "2023-10-31T15:51:14.401919217", "message": "", "numberOfIndividuals": 87, "numberOfProperties": 196, "numberOfTerms": 2914, "ontologyId": "ohd", "status": "LOADED", - "updated": "2023-10-26T18:54:51.319695920", + "updated": "2023-10-31T15:51:14.401919217", "version": "2023-07-22" }, { @@ -9268,14 +9330,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:52.066799046", + "loaded": "2023-10-31T15:51:15.505967940", "message": "", "numberOfIndividuals": 12, "numberOfProperties": 207, "numberOfTerms": 1025, "ontologyId": "ohmi", "status": "LOADED", - "updated": "2023-10-26T18:54:52.066799046", + "updated": "2023-10-31T15:51:15.505967940", "version": "2019-09-17" }, { @@ -9328,14 +9390,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:53.857077141", + "loaded": "2023-10-31T15:51:17.300709039", "message": "", "numberOfIndividuals": 295, "numberOfProperties": 516, "numberOfTerms": 11291, "ontologyId": "ohpi", "status": "LOADED", - "updated": "2023-10-26T18:54:53.857077141", + "updated": "2023-10-31T15:51:17.300709039", "version": null }, { @@ -9390,14 +9452,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:50.725079061", + "loaded": "2023-10-31T16:10:21.130281064", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 44, "numberOfTerms": 12, "ontologyId": "oio", "status": "LOADED", - "updated": "2023-10-26T19:12:50.725079061", + "updated": "2023-10-31T16:10:21.130281064", "version": null }, { @@ -9466,14 +9528,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:48.940808005", + "loaded": "2023-10-31T16:15:44.939996304", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 70, "numberOfTerms": 2306, "ontologyId": "om", "status": "LOADED", - "updated": "2023-10-26T19:17:48.940808005", + "updated": "2023-10-31T16:15:44.939996304", "version": "2.0.50" }, { @@ -9525,14 +9587,14 @@ "en(x,y,t)'." ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:41.373974835", + "loaded": "2023-10-31T16:00:49.015514690", "message": "", "numberOfIndividuals": 15, "numberOfProperties": 109, "numberOfTerms": 427, "ontologyId": "omiabis", "status": "LOADED", - "updated": "2023-10-26T19:04:41.373974835", + "updated": "2023-10-31T16:00:49.015514690", "version": " 2014-05-28" }, { @@ -9583,14 +9645,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:54:59.107113565", + "loaded": "2023-10-31T15:51:22.836044123", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 188, "numberOfTerms": 90928, "ontologyId": "omit", "status": "LOADED", - "updated": "2023-10-26T18:54:59.107113565", + "updated": "2023-10-31T15:51:22.836044123", "version": null }, { @@ -9641,14 +9703,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:07.736172720", + "loaded": "2023-10-31T15:51:31.295971287", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 73, "numberOfTerms": 28, "ontologyId": "omo", "status": "LOADED", - "updated": "2023-10-26T18:55:07.736172720", + "updated": "2023-10-31T15:51:31.295971287", "version": "2023-10-12" }, { @@ -9699,14 +9761,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:07.990461432", + "loaded": "2023-10-31T15:51:31.551150759", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 131, "numberOfTerms": 2309, "ontologyId": "omp", "status": "LOADED", - "updated": "2023-10-26T18:55:07.990461432", + "updated": "2023-10-31T15:51:31.551150759", "version": null }, { @@ -9757,14 +9819,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:08.468972442", + "loaded": "2023-10-31T15:51:32.031872794", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 299, "numberOfTerms": 664, "ontologyId": "omrse", "status": "LOADED", - "updated": "2023-10-26T18:55:08.468972442", + "updated": "2023-10-31T15:51:32.031872794", "version": "2023-10-08" }, { @@ -9816,14 +9878,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:08.973639722", + "loaded": "2023-10-31T15:51:32.554288916", "message": "", "numberOfIndividuals": 326, "numberOfProperties": 318, "numberOfTerms": 4100, "ontologyId": "one", "status": "LOADED", - "updated": "2023-10-26T18:55:08.973639722", + "updated": "2023-10-31T15:51:32.554288916", "version": null }, { @@ -9886,14 +9948,14 @@ "th" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:10.206814800", + "loaded": "2023-10-31T15:51:33.852022138", "message": "", "numberOfIndividuals": 153, "numberOfProperties": 395, "numberOfTerms": 8025, "ontologyId": "ons", "status": "LOADED", - "updated": "2023-10-26T18:55:10.206814800", + "updated": "2023-10-31T15:51:33.852022138", "version": "Release version 1.2.3" }, { @@ -9944,14 +10006,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:11.408903752", + "loaded": "2023-10-31T15:51:35.032690390", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 58, "numberOfTerms": 674, "ontologyId": "ontoavida", "status": "LOADED", - "updated": "2023-10-26T18:55:11.408903752", + "updated": "2023-10-31T15:51:35.032690390", "version": null }, { @@ -10004,14 +10066,14 @@ "pt" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:11.800503051", + "loaded": "2023-10-31T15:51:35.487665209", "message": "", "numberOfIndividuals": 17, "numberOfProperties": 950, "numberOfTerms": 2120, "ontologyId": "ontoneo", "status": "LOADED", - "updated": "2023-10-26T18:55:11.800503051", + "updated": "2023-10-31T15:51:35.487665209", "version": "2021-04-29" }, { @@ -10062,14 +10124,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:12.268792172", + "loaded": "2023-10-31T15:51:35.960730131", "message": "", "numberOfIndividuals": 22, "numberOfProperties": 190, "numberOfTerms": 717, "ontologyId": "oostt", "status": "LOADED", - "updated": "2023-10-26T18:55:12.268792172", + "updated": "2023-10-31T15:51:35.960730131", "version": "release version - 2023-03-30" }, { @@ -10120,14 +10182,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:12.462635774", + "loaded": "2023-10-31T15:51:36.144422759", "message": "", "numberOfIndividuals": 20, "numberOfProperties": 121, "numberOfTerms": 560, "ontologyId": "opl", "status": "LOADED", - "updated": "2023-10-26T18:55:12.462635774", + "updated": "2023-10-31T15:51:36.144422759", "version": "2023-08-28" }, { @@ -10181,14 +10243,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:12.823330249", + "loaded": "2023-10-31T15:51:36.520243313", "message": "", "numberOfIndividuals": 36, "numberOfProperties": 282, "numberOfTerms": 3149, "ontologyId": "opmi", "status": "LOADED", - "updated": "2023-10-26T18:55:12.823330249", + "updated": "2023-10-31T15:51:36.520243313", "version": "Vision Release: 1.0.161" }, { @@ -10252,14 +10314,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:13:22.666377497", + "loaded": "2023-10-31T16:10:53.748204693", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 33, "numberOfTerms": 15447, "ontologyId": "ordo", "status": "LOADED", - "updated": "2023-10-26T19:13:22.666377497", + "updated": "2023-10-31T16:10:53.748204693", "version": "4.3" }, { @@ -10310,14 +10372,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:13.331438829", + "loaded": "2023-10-31T15:51:37.008036061", "message": "", "numberOfIndividuals": 1, "numberOfProperties": 17, "numberOfTerms": 163, "ontologyId": "ornaseq", "status": "LOADED", - "updated": "2023-10-26T18:55:13.331438829", + "updated": "2023-10-31T15:51:37.008036061", "version": null }, { @@ -10379,14 +10441,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:51.513192756", + "loaded": "2023-10-31T16:15:47.139752155", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 39, "numberOfTerms": 33, "ontologyId": "orth", "status": "LOADED", - "updated": "2023-10-26T19:17:51.513192756", + "updated": "2023-10-31T16:15:47.139752155", "version": "This ontology is the second version of the orthology ontology first published in 2015 and available at http://purl.bioontology.org/ontology/ORTH .\n@authors T.M. de Farias, H. Chiba, J.T. Fernandez-Breis, E. Antezana, D. Kuznetsov, C. Dessimoz and F. Villiers." }, { @@ -10438,14 +10500,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:13.625988058", + "loaded": "2023-10-31T15:51:37.300580610", "message": "", "numberOfIndividuals": 22, "numberOfProperties": 247, "numberOfTerms": 1554, "ontologyId": "ovae", "status": "LOADED", - "updated": "2023-10-26T18:55:13.625988058", + "updated": "2023-10-31T15:51:37.300580610", "version": "Vision Release: 1.0.34" }, { @@ -10500,14 +10562,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.616405406", + "loaded": "2023-10-31T16:10:22.054888153", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 58, "numberOfTerms": 32, "ontologyId": "owl", "status": "LOADED", - "updated": "2023-10-26T19:12:51.616405406", + "updated": "2023-10-31T16:10:22.054888153", "version": "$Date: 2009/11/15 10:54:12 $" }, { @@ -10558,14 +10620,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:15.691105472", + "loaded": "2023-10-31T15:51:39.436009476", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 526, "numberOfTerms": 10588, "ontologyId": "pato", "status": "LOADED", - "updated": "2023-10-26T18:55:15.691105472", + "updated": "2023-10-31T15:51:39.436009476", "version": "2023-05-18" }, { @@ -10624,14 +10686,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:23.186669737", + "loaded": "2023-10-31T15:51:47.103791092", "message": "", "numberOfIndividuals": 1825, "numberOfProperties": 554, "numberOfTerms": 121028, "ontologyId": "pcl", "status": "LOADED", - "updated": "2023-10-26T18:55:23.186669737", + "updated": "2023-10-31T15:51:47.103791092", "version": "2023-02-27" }, { @@ -10682,14 +10744,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:36.158801220", + "loaded": "2023-10-31T15:52:00.028664306", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 197, "numberOfTerms": 220, "ontologyId": "pco", "status": "LOADED", - "updated": "2023-10-26T18:55:36.158801220", + "updated": "2023-10-31T15:52:00.028664306", "version": null }, { @@ -10741,14 +10803,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:36.284036774", + "loaded": "2023-10-31T15:52:00.143678375", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 93, "numberOfTerms": 310, "ontologyId": "pdro", "status": "LOADED", - "updated": "2023-10-26T18:55:36.284036774", + "updated": "2023-10-31T15:52:00.143678375", "version": "2021-06-08" }, { @@ -10799,14 +10861,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:36.940404097", + "loaded": "2023-10-31T15:52:00.747058285", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 182, "numberOfTerms": 3550, "ontologyId": "peco", "status": "LOADED", - "updated": "2023-10-26T18:55:36.940404097", + "updated": "2023-10-31T15:52:00.747058285", "version": null }, { @@ -10857,14 +10919,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:38.310914733", + "loaded": "2023-10-31T15:52:02.107445243", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 306, "numberOfTerms": 3930, "ontologyId": "phipo", "status": "LOADED", - "updated": "2023-10-26T18:55:38.310914733", + "updated": "2023-10-31T15:52:02.107445243", "version": "2023-10-11" }, { @@ -10917,14 +10979,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:39.671930991", + "loaded": "2023-10-31T15:52:03.499720482", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 291, "numberOfTerms": 875, "ontologyId": "plana", "status": "LOADED", - "updated": "2023-10-26T18:55:39.671930991", + "updated": "2023-10-31T15:52:03.499720482", "version": "2023-03-13" }, { @@ -10975,14 +11037,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:40.501505590", + "loaded": "2023-10-31T15:52:04.301205235", "message": "", "numberOfIndividuals": 19, "numberOfProperties": 324, "numberOfTerms": 3560, "ontologyId": "planp", "status": "LOADED", - "updated": "2023-10-26T18:55:40.501505590", + "updated": "2023-10-31T15:52:04.301205235", "version": null }, { @@ -11033,14 +11095,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:41.830495267", + "loaded": "2023-10-31T15:52:05.632303917", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 207, "numberOfTerms": 2026, "ontologyId": "po", "status": "LOADED", - "updated": "2023-10-26T18:55:41.830495267", + "updated": "2023-10-31T15:52:05.632303917", "version": null }, { @@ -11092,14 +11154,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:42.524399781", + "loaded": "2023-10-31T15:52:06.333760270", "message": "", "numberOfIndividuals": 2, "numberOfProperties": 142, "numberOfTerms": 932, "ontologyId": "poro", "status": "LOADED", - "updated": "2023-10-26T18:55:42.524399781", + "updated": "2023-10-31T15:52:06.333760270", "version": null }, { @@ -11151,14 +11213,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:55:42.749602249", + "loaded": "2023-10-31T15:52:06.562055773", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 101, "numberOfTerms": 443, "ontologyId": "ppo", "status": "LOADED", - "updated": "2023-10-26T18:55:42.749602249", + "updated": "2023-10-31T15:52:06.562055773", "version": null }, { @@ -11209,14 +11271,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:56:52.076424615", + "loaded": "2023-10-31T15:53:16.202851519", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 56, "numberOfTerms": 334852, "ontologyId": "pr", "status": "LOADED", - "updated": "2023-10-26T18:56:52.076424615", + "updated": "2023-10-31T15:53:16.202851519", "version": null }, { @@ -11277,14 +11339,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:29.084965091", + "loaded": "2023-10-31T16:15:24.763949944", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 83, "numberOfTerms": 3743, "ontologyId": "pride", "status": "LOADED", - "updated": "2023-10-26T19:17:29.084965091", + "updated": "2023-10-31T16:15:24.763949944", "version": null }, { @@ -11341,14 +11403,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:28.781697005", + "loaded": "2023-10-31T16:15:24.465109669", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 44, "numberOfTerms": 39, "ontologyId": "probonto", "status": "LOADED", - "updated": "2023-10-26T19:17:28.781697005", + "updated": "2023-10-31T16:15:24.465109669", "version": "2.5.0" }, { @@ -11400,14 +11462,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:42.618684036", + "loaded": "2023-10-31T15:55:54.731609020", "message": "", "numberOfIndividuals": 17, "numberOfProperties": 149, "numberOfTerms": 922, "ontologyId": "proco", "status": "LOADED", - "updated": "2023-10-26T18:59:42.618684036", + "updated": "2023-10-31T15:55:54.731609020", "version": "PROCO release 20220414" }, { @@ -11470,14 +11532,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:49.295518745", + "loaded": "2023-10-31T16:15:45.355186759", "message": "", "numberOfIndividuals": 1, "numberOfProperties": 72, "numberOfTerms": 31, "ontologyId": "prov", "status": "LOADED", - "updated": "2023-10-26T19:17:49.295518745", + "updated": "2023-10-31T16:15:45.355186759", "version": null }, { @@ -11530,14 +11592,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:42.905586892", + "loaded": "2023-10-31T15:55:55.028506486", "message": "", "numberOfIndividuals": 37, "numberOfProperties": 267, "numberOfTerms": 1205, "ontologyId": "psdo", "status": "LOADED", - "updated": "2023-10-26T18:59:42.905586892", + "updated": "2023-10-31T15:55:55.028506486", "version": "1.0.1" }, { @@ -11588,14 +11650,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:43.414175823", + "loaded": "2023-10-31T15:55:55.528140103", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 160, "numberOfTerms": 3762, "ontologyId": "pso", "status": "LOADED", - "updated": "2023-10-26T18:59:43.414175823", + "updated": "2023-10-31T15:55:55.528140103", "version": null }, { @@ -11646,14 +11708,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:44.156267387", + "loaded": "2023-10-31T15:55:56.274062854", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 2684, "ontologyId": "pw", "status": "LOADED", - "updated": "2023-10-26T18:59:44.156267387", + "updated": "2023-10-31T15:55:56.274062854", "version": null }, { @@ -11706,14 +11768,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:45.556600356", + "loaded": "2023-10-31T15:55:57.686850975", "message": "", "numberOfIndividuals": 351, "numberOfProperties": 496, "numberOfTerms": 5745, "ontologyId": "rbo", "status": "LOADED", - "updated": "2023-10-26T18:59:45.556600356", + "updated": "2023-10-31T15:55:57.686850975", "version": "2023-09-05" }, { @@ -11768,14 +11830,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.180893375", + "loaded": "2023-10-31T16:10:21.637141547", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 9, "numberOfTerms": 6, "ontologyId": "rdfs", "status": "LOADED", - "updated": "2023-10-26T19:12:51.180893375", + "updated": "2023-10-31T16:10:21.637141547", "version": null }, { @@ -11840,14 +11902,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:49.162419595", + "loaded": "2023-10-31T16:15:45.219007338", "message": "", "numberOfIndividuals": 255, "numberOfProperties": 209, "numberOfTerms": 389, "ontologyId": "reproduceme", "status": "LOADED", - "updated": "2023-10-26T19:17:49.162419595", + "updated": "2023-10-31T16:15:45.219007338", "version": "1.1" }, { @@ -11906,14 +11968,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:16:41.951998403", + "loaded": "2023-10-31T16:14:32.993703443", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 12, "numberOfTerms": 147738, "ontologyId": "reto", "status": "LOADED", - "updated": "2023-10-26T19:16:41.951998403", + "updated": "2023-10-31T16:14:32.993703443", "version": null }, { @@ -11964,14 +12026,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:36.309861614", + "loaded": "2023-10-31T15:58:45.994449628", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 17, "numberOfTerms": 552, "ontologyId": "rex", "status": "LOADED", - "updated": "2023-10-26T19:02:36.309861614", + "updated": "2023-10-31T15:58:45.994449628", "version": null }, { @@ -12030,14 +12092,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:16:17.286963771", + "loaded": "2023-10-31T16:14:06.230408322", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 12, "numberOfTerms": 158239, "ontologyId": "rexo", "status": "LOADED", - "updated": "2023-10-26T19:16:17.286963771", + "updated": "2023-10-31T16:14:06.230408322", "version": null }, { @@ -12094,14 +12156,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:47.427658287", + "loaded": "2023-10-31T15:55:59.394520707", "message": "", "numberOfIndividuals": 24, "numberOfProperties": 791, "numberOfTerms": 47, "ontologyId": "ro", "status": "LOADED", - "updated": "2023-10-26T18:59:47.427658287", + "updated": "2023-10-31T15:55:59.394520707", "version": "2023-08-18" }, { @@ -12144,7 +12206,7 @@ "title": "Rat Strain Ontology", "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues", "version": null, - "versionIri": "http://purl.obolibrary.org/obo/rs/6.208/rs.owl" + "versionIri": "http://purl.obolibrary.org/obo/rs/6.209/rs.owl" }, "fileHash": null, "lang": "en", @@ -12152,14 +12214,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:47.798670670", + "loaded": "2023-10-31T15:55:59.773016313", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 22, "numberOfTerms": 5272, "ontologyId": "rs", "status": "LOADED", - "updated": "2023-10-26T18:59:47.798670670", + "updated": "2023-10-31T15:55:59.773016313", "version": null }, { @@ -12210,14 +12272,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:48.515839281", + "loaded": "2023-10-31T15:56:00.491306550", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 49, "numberOfTerms": 1019, "ontologyId": "rxno", "status": "LOADED", - "updated": "2023-10-26T18:59:48.515839281", + "updated": "2023-10-31T15:56:00.491306550", "version": null }, { @@ -12270,14 +12332,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:32.024421233", + "loaded": "2023-10-31T15:58:41.975316225", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 1, "numberOfTerms": 695, "ontologyId": "sbo", "status": "LOADED", - "updated": "2023-10-26T19:02:32.024421233", + "updated": "2023-10-31T15:58:41.975316225", "version": "28:08:2021 03:13" }, { @@ -12328,14 +12390,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:32.308909727", + "loaded": "2023-10-31T15:58:42.257794945", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 145, "numberOfTerms": 2071, "ontologyId": "scdo", "status": "LOADED", - "updated": "2023-10-26T19:02:32.308909727", + "updated": "2023-10-31T15:58:42.257794945", "version": null }, { @@ -12390,14 +12452,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.958838933", + "loaded": "2023-10-31T16:10:22.739339405", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 1466, "numberOfTerms": 903, "ontologyId": "schemaorg_http", "status": "LOADED", - "updated": "2023-10-26T19:12:51.958838933", + "updated": "2023-10-31T16:10:22.739339405", "version": null }, { @@ -12452,14 +12514,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:52.315862913", + "loaded": "2023-10-31T16:10:23.116732786", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 1466, "numberOfTerms": 903, "ontologyId": "schemaorg_https", "status": "LOADED", - "updated": "2023-10-26T19:12:52.315862913", + "updated": "2023-10-31T16:10:23.116732786", "version": null }, { @@ -12518,14 +12580,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:57.056916809", + "loaded": "2023-10-31T16:10:28.555292029", "message": "", "numberOfIndividuals": 470, "numberOfProperties": 194, "numberOfTerms": 906, "ontologyId": "sdgio", "status": "LOADED", - "updated": "2023-10-26T19:12:57.056916809", + "updated": "2023-10-31T16:10:28.555292029", "version": null }, { @@ -12582,14 +12644,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:42.431914798", + "loaded": "2023-10-31T16:02:09.148565617", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 47, "ontologyId": "semapv", "status": "LOADED", - "updated": "2023-10-26T19:04:42.431914798", + "updated": "2023-10-31T16:02:09.148565617", "version": null }, { @@ -12640,14 +12702,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:48.713547213", + "loaded": "2023-10-31T15:56:00.689901996", "message": "", "numberOfIndividuals": 21, "numberOfProperties": 313, "numberOfTerms": 125, "ontologyId": "sepio", "status": "LOADED", - "updated": "2023-10-26T18:59:48.713547213", + "updated": "2023-10-31T15:56:00.689901996", "version": "2023-06-13" }, { @@ -12698,14 +12760,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:19:22.733306726", + "loaded": "2023-10-31T16:17:20.805051954", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 0, "numberOfTerms": 95, "ontologyId": "shareloc", "status": "LOADED", - "updated": "2023-10-26T19:19:22.733306726", + "updated": "2023-10-31T16:17:20.805051954", "version": null }, { @@ -12756,14 +12818,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:02:36.480303392", + "loaded": "2023-10-31T15:58:46.158726079", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 525, "ontologyId": "sibo", "status": "LOADED", - "updated": "2023-10-26T19:02:36.480303392", + "updated": "2023-10-31T15:58:46.158726079", "version": null }, { @@ -12826,14 +12888,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:31.928390155", + "loaded": "2023-10-31T16:15:27.540072059", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 238, "numberOfTerms": 1584, "ontologyId": "sio", "status": "LOADED", - "updated": "2023-10-26T19:17:31.928390155", + "updated": "2023-10-31T16:15:27.540072059", "version": "1.59" }, { @@ -12888,14 +12950,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:12:51.691139631", + "loaded": "2023-10-31T16:10:22.145034860", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 56, "numberOfTerms": 6, "ontologyId": "skos", "status": "LOADED", - "updated": "2023-10-26T19:12:51.691139631", + "updated": "2023-10-31T16:10:22.145034860", "version": null }, { @@ -12950,14 +13012,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:05:58.495180577", + "loaded": "2023-10-31T16:03:28.044437924", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 50, "numberOfTerms": 964550, "ontologyId": "slm", "status": "LOADED", - "updated": "2023-10-26T19:05:58.495180577", + "updated": "2023-10-31T16:03:28.044437924", "version": null }, { @@ -13018,14 +13080,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:18:18.360638634", + "loaded": "2023-10-31T16:16:15.141506330", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 124, "numberOfTerms": 352449, "ontologyId": "snomed", "status": "LOADED", - "updated": "2023-10-26T19:18:18.360638634", + "updated": "2023-10-31T16:16:15.141506330", "version": null }, { @@ -13076,14 +13138,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:49.074880342", + "loaded": "2023-10-31T15:56:01.060674824", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 91, "numberOfTerms": 2729, "ontologyId": "so", "status": "LOADED", - "updated": "2023-10-26T18:59:49.074880342", + "updated": "2023-10-31T15:56:01.060674824", "version": null }, { @@ -13134,16 +13196,91 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:49.589364892", + "loaded": "2023-10-31T15:56:01.580944798", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 20, "numberOfTerms": 832, "ontologyId": "spd", "status": "LOADED", - "updated": "2023-10-26T18:59:49.589364892", + "updated": "2023-10-31T15:56:01.580944798", "version": null }, + { + "_links": { + "individuals": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/srao/individuals" + }, + "properties": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/srao/properties" + }, + "self": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/srao?lang=en" + }, + "terms": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/srao/terms" + } + }, + "baseUris": [ + "http://www.fairsharing.org/ontology/subject" + ], + "config": { + "allowDownload": false, + "annotations": null, + "baseUris": [ + "http://www.fairsharing.org/ontology/subject" + ], + "creators": [], + "definitionProperties": [ + "http://purl.obolibrary.org/obo/IAO_0000115" + ], + "description": "The FAIRsharing Subject Ontology (SRAO) is an application ontology for the categorization of research disciplines across all research domains, from the humanities to the natural sciences. It utilizes multiple external vocabularies.", + "fileLocation": "https://github.com/FAIRsharing/subject-ontology/raw/master/SRAO.owl", + "hiddenProperties": [], + "hierarchicalProperties": [], + "homepage": "https://github.com/FAIRsharing/subject-ontology", + "id": "srao", + "isSkos": false, + "labelProperty": "http://www.w3.org/2000/01/rdf-schema#label", + "logo": null, + "mailingList": "contact@fairsharing.org", + "namespace": "srao", + "oboSlims": false, + "preferredPrefix": "SRAO", + "preferredRootTerms": [], + "synonymProperties": [ + "http://purl.obolibrary.org/obo/IAO_0000118", + "http://www.fairsharing.org/ontology/subject/SRAO_0000279", + "http://www.fairsharing.org/ontology/subject/SRAO_0000278", + "http://www.fairsharing.org/ontology/subject/SRAO_0000269", + "http://www.fairsharing.org/ontology/domain/DRAO_0000001", + "http://www.fairsharing.org/ontology/subject/SRAO_0000276", + "http://www.fairsharing.org/ontology/subject/SRAO_0000317", + "http://www.fairsharing.org/ontology/subject/SRAO_0000272", + "http://www.fairsharing.org/ontology/subject/SRAO_0000292", + "http://www.fairsharing.org/ontology/subject/SRAO_0000268" + ], + "title": "FAIRsharing Subject Ontology (SRAO)", + "tracker": null, + "version": "2023-10-10", + "versionIri": "http://www.fairsharing.org/ontology/subject/SRAO/releases/2023-10-10/SRAO.owl" + }, + "fileHash": null, + "lang": "en", + "languages": [ + "en" + ], + "loadAttempts": 0, + "loaded": "2023-10-31T16:15:30.895941499", + "message": "", + "numberOfIndividuals": 0, + "numberOfProperties": 43, + "numberOfTerms": 435, + "ontologyId": "srao", + "status": "LOADED", + "updated": "2023-10-31T16:15:30.895941499", + "version": "2023-10-10" + }, { "_links": { "individuals": { @@ -13194,14 +13331,14 @@ "fr" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:49.808293686", + "loaded": "2023-10-31T15:56:01.811932448", "message": "", "numberOfIndividuals": 14, "numberOfProperties": 113, "numberOfTerms": 889, "ontologyId": "stato", "status": "LOADED", - "updated": "2023-10-26T18:59:49.808293686", + "updated": "2023-10-31T15:56:01.811932448", "version": "RC1.4" }, { @@ -13253,14 +13390,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:50.191481100", + "loaded": "2023-10-31T15:56:02.201594680", "message": "", "numberOfIndividuals": 446, "numberOfProperties": 240, "numberOfTerms": 1971, "ontologyId": "swo", "status": "LOADED", - "updated": "2023-10-26T18:59:50.191481100", + "updated": "2023-10-31T15:56:02.201594680", "version": "2023-03-05" }, { @@ -13311,14 +13448,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:50.616892718", + "loaded": "2023-10-31T15:56:02.645553376", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 23, "numberOfTerms": 1013, "ontologyId": "symp", "status": "LOADED", - "updated": "2023-10-26T18:59:50.616892718", + "updated": "2023-10-31T15:56:02.645553376", "version": null }, { @@ -13369,14 +13506,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:50.780186850", + "loaded": "2023-10-31T15:56:02.808441320", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 62, "numberOfTerms": 563, "ontologyId": "t4fs", "status": "LOADED", - "updated": "2023-10-26T18:59:50.780186850", + "updated": "2023-10-31T15:56:02.808441320", "version": "2023-03-02" }, { @@ -13427,14 +13564,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:20.312969682", + "loaded": "2023-10-31T16:00:32.187028380", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 17, "numberOfTerms": 628, "ontologyId": "tads", "status": "LOADED", - "updated": "2023-10-26T19:04:20.312969682", + "updated": "2023-10-31T16:00:32.187028380", "version": null }, { @@ -13485,14 +13622,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:41.747421341", + "loaded": "2023-10-31T16:00:49.389964999", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 49, "numberOfTerms": 3372, "ontologyId": "tao", "status": "LOADED", - "updated": "2023-10-26T19:04:41.747421341", + "updated": "2023-10-31T16:00:49.389964999", "version": null }, { @@ -13543,14 +13680,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:50.920757036", + "loaded": "2023-10-31T15:56:02.950328132", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 11, "numberOfTerms": 61, "ontologyId": "taxrank", "status": "LOADED", - "updated": "2023-10-26T18:59:50.920757036", + "updated": "2023-10-31T15:56:02.950328132", "version": null }, { @@ -13610,14 +13747,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:13:26.357951470", + "loaded": "2023-10-31T16:10:57.515602482", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 18, "numberOfTerms": 167, "ontologyId": "teddy", "status": "LOADED", - "updated": "2023-10-26T19:13:26.357951470", + "updated": "2023-10-31T16:10:57.515602482", "version": "rel-2014-04-24" }, { @@ -13668,14 +13805,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:20.815971039", + "loaded": "2023-10-31T16:00:32.691526924", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 25, "numberOfTerms": 1864, "ontologyId": "tgma", "status": "LOADED", - "updated": "2023-10-26T19:04:20.815971039", + "updated": "2023-10-31T16:00:32.691526924", "version": null }, { @@ -13726,14 +13863,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:51.734922722", + "loaded": "2023-10-31T15:56:03.785203445", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 446, "numberOfTerms": 6736, "ontologyId": "to", "status": "LOADED", - "updated": "2023-10-26T18:59:51.734922722", + "updated": "2023-10-31T15:56:03.785203445", "version": null }, { @@ -13784,14 +13921,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:53.007807629", + "loaded": "2023-10-31T15:56:05.067180345", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 16, "numberOfTerms": 35, "ontologyId": "trans", "status": "LOADED", - "updated": "2023-10-26T18:59:53.007807629", + "updated": "2023-10-31T15:56:05.067180345", "version": null }, { @@ -13842,14 +13979,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T18:59:56.832711195", + "loaded": "2023-10-31T15:56:08.906319490", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 27, "numberOfTerms": 38705, "ontologyId": "tto", "status": "LOADED", - "updated": "2023-10-26T18:59:56.832711195", + "updated": "2023-10-31T15:56:08.906319490", "version": null }, { @@ -13901,14 +14038,14 @@ "en-us" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:04.258543016", + "loaded": "2023-10-31T15:56:16.067635276", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 148, "numberOfTerms": 9406, "ontologyId": "txpo", "status": "LOADED", - "updated": "2023-10-26T19:00:04.258543016", + "updated": "2023-10-31T15:56:16.067635276", "version": "2022/12/07" }, { @@ -13951,7 +14088,7 @@ "title": "Uber-anatomy ontology", "tracker": "https://github.com/obophenotype/uberon/issues", "version": null, - "versionIri": "http://purl.obolibrary.org/obo/uberon/releases/2023-09-05/uberon.owl" + "versionIri": "http://purl.obolibrary.org/obo/uberon/releases/2023-10-27/uberon.owl" }, "fileHash": null, "lang": "en", @@ -13959,14 +14096,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:10.630707667", + "loaded": "2023-10-31T15:56:22.473702246", "message": "", - "numberOfIndividuals": 0, - "numberOfProperties": 621, - "numberOfTerms": 26320, + "numberOfIndividuals": 18, + "numberOfProperties": 618, + "numberOfTerms": 26332, "ontologyId": "uberon", "status": "LOADED", - "updated": "2023-10-26T19:00:10.630707667", + "updated": "2023-10-31T15:56:22.473702246", "version": null }, { @@ -14021,14 +14158,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:17:33.310640403", + "loaded": "2023-10-31T16:15:28.966962386", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 11, "numberOfTerms": 1523, "ontologyId": "unimod", "status": "LOADED", - "updated": "2023-10-26T19:17:33.310640403", + "updated": "2023-10-31T16:15:28.966962386", "version": null }, { @@ -14079,14 +14216,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:19.039770395", + "loaded": "2023-10-31T15:56:30.908637142", "message": "", "numberOfIndividuals": 275, "numberOfProperties": 4, "numberOfTerms": 572, "ontologyId": "uo", "status": "LOADED", - "updated": "2023-10-26T19:00:19.039770395", + "updated": "2023-10-31T15:56:30.908637142", "version": "2023-05-25" }, { @@ -14137,14 +14274,77 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:22.526276499", + "loaded": "2023-10-31T16:00:34.445125670", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 142, "numberOfTerms": 4672, "ontologyId": "upa", "status": "LOADED", - "updated": "2023-10-26T19:04:22.526276499", + "updated": "2023-10-31T16:00:34.445125670", + "version": null + }, + { + "_links": { + "individuals": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/upheno2/individuals" + }, + "properties": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/upheno2/properties" + }, + "self": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/upheno2?lang=en" + }, + "terms": { + "href": "https://www.ebi.ac.uk/ols4/api/ontologies/upheno2/terms" + } + }, + "baseUris": [ + "http://purl.obolibrary.org/obo/UPHENO_" + ], + "config": { + "allowDownload": false, + "annotations": null, + "baseUris": [ + "http://purl.obolibrary.org/obo/UPHENO_" + ], + "creators": [], + "definitionProperties": [], + "description": "The uPheno project aims to unify the annotation of phenotypes across species in a manner analogous to unification of gene function annotation by the Gene Ontology.", + "fileLocation": "https://github.com/obophenotype/upheno-dev/releases/download/v2023-10-27/upheno_all_with_relations.owl", + "hiddenProperties": [], + "hierarchicalProperties": [], + "homepage": "https://github.com/obophenotype/upheno-dev", + "id": "upheno2", + "isSkos": false, + "labelProperty": "http://www.w3.org/2000/01/rdf-schema#label", + "logo": null, + "mailingList": null, + "namespace": "upheno2", + "oboSlims": false, + "preferredPrefix": "upheno2", + "preferredRootTerms": [], + "synonymProperties": [], + "title": "Unified Phenotype Ontology (uPheno) 2.0", + "tracker": null, + "version": null, + "versionIri": null + }, + "fileHash": null, + "lang": "en", + "languages": [ + "de", + "en" + ], + "loadAttempts": 0, + "loaded": "2023-10-31T16:01:17.315863494", + "message": "", + "numberOfIndividuals": 70, + "numberOfProperties": 803, + "numberOfTerms": 176176, + "ontologyId": "upheno2", + "status": "LOADED", + "updated": "2023-10-31T16:01:17.315863494", "version": null }, { @@ -14195,14 +14395,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:26.121091725", + "loaded": "2023-10-31T15:56:38.009709963", "message": "", "numberOfIndividuals": 217, "numberOfProperties": 228, "numberOfTerms": 18757, "ontologyId": "vbo", "status": "LOADED", - "updated": "2023-10-26T19:00:26.121091725", + "updated": "2023-10-31T15:56:38.009709963", "version": "2023-09-28" }, { @@ -14256,14 +14456,14 @@ "zh" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:32.226996673", + "loaded": "2023-10-31T15:56:44.195802329", "message": "", "numberOfIndividuals": 167, "numberOfProperties": 355, "numberOfTerms": 7912, "ontologyId": "vo", "status": "LOADED", - "updated": "2023-10-26T19:00:32.226996673", + "updated": "2023-10-31T15:56:44.195802329", "version": "1.1.245" }, { @@ -14314,14 +14514,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:04:42.349030519", + "loaded": "2023-10-31T16:00:50.016308970", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 42, "numberOfTerms": 314, "ontologyId": "vsao", "status": "LOADED", - "updated": "2023-10-26T19:04:42.349030519", + "updated": "2023-10-31T16:00:50.016308970", "version": null }, { @@ -14372,14 +14572,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:33.783673118", + "loaded": "2023-10-31T15:56:45.725462147", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 25, "numberOfTerms": 3826, "ontologyId": "vt", "status": "LOADED", - "updated": "2023-10-26T19:00:33.783673118", + "updated": "2023-10-31T15:56:45.725462147", "version": null }, { @@ -14430,14 +14630,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:00:42.448272996", + "loaded": "2023-10-31T15:56:54.613736285", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 27, "numberOfTerms": 107254, "ontologyId": "vto", "status": "LOADED", - "updated": "2023-10-26T19:00:42.448272996", + "updated": "2023-10-31T15:56:54.613736285", "version": null }, { @@ -14488,14 +14688,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:00.217587508", + "loaded": "2023-10-31T15:57:11.413184659", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 183, "numberOfTerms": 7573, "ontologyId": "wbbt", "status": "LOADED", - "updated": "2023-10-26T19:01:00.217587508", + "updated": "2023-10-31T15:57:11.413184659", "version": null }, { @@ -14546,14 +14746,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:01.631457584", + "loaded": "2023-10-31T15:57:12.742829151", "message": "", "numberOfIndividuals": 9, "numberOfProperties": 182, "numberOfTerms": 796, "ontologyId": "wbls", "status": "LOADED", - "updated": "2023-10-26T19:01:01.631457584", + "updated": "2023-10-31T15:57:12.742829151", "version": "2023-09-26" }, { @@ -14604,14 +14804,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:04.003529661", + "loaded": "2023-10-31T15:57:15.135575546", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 537, "numberOfTerms": 12836, "ontologyId": "wbphenotype", "status": "LOADED", - "updated": "2023-10-26T19:01:04.003529661", + "updated": "2023-10-31T15:57:15.135575546", "version": "2023-09-26" }, { @@ -14662,14 +14862,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:08.212359550", + "loaded": "2023-10-31T15:57:19.212457340", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 42, "numberOfTerms": 1775, "ontologyId": "xao", "status": "LOADED", - "updated": "2023-10-26T19:01:08.212359550", + "updated": "2023-10-31T15:57:19.212457340", "version": null }, { @@ -14712,7 +14912,7 @@ "title": "Experimental condition ontology", "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues", "version": null, - "versionIri": "http://purl.obolibrary.org/obo/xco/4.141/xco.owl" + "versionIri": "http://purl.obolibrary.org/obo/xco/4.142/xco.owl" }, "fileHash": null, "lang": "en", @@ -14720,14 +14920,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:08.803383786", + "loaded": "2023-10-31T15:57:19.772974083", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 25, - "numberOfTerms": 1098, + "numberOfTerms": 1099, "ontologyId": "xco", "status": "LOADED", - "updated": "2023-10-26T19:01:08.803383786", + "updated": "2023-10-31T15:57:19.772974083", "version": null }, { @@ -14778,14 +14978,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:09.116066457", + "loaded": "2023-10-31T15:57:20.141869950", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 45, "numberOfTerms": 1102, "ontologyId": "xlmod", "status": "LOADED", - "updated": "2023-10-26T19:01:09.116066457", + "updated": "2023-10-31T15:57:20.141869950", "version": null }, { @@ -14836,14 +15036,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:14.922446046", + "loaded": "2023-10-31T15:57:26.119495376", "message": "", "numberOfIndividuals": 17, "numberOfProperties": 494, "numberOfTerms": 30655, "ontologyId": "xpo", "status": "LOADED", - "updated": "2023-10-26T19:01:14.922446046", + "updated": "2023-10-31T15:57:26.119495376", "version": "2022-09-15" }, { @@ -14894,14 +15094,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:26.724139874", + "loaded": "2023-10-31T15:57:37.904174234", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 44, "numberOfTerms": 161, "ontologyId": "zeco", "status": "LOADED", - "updated": "2023-10-26T19:01:26.724139874", + "updated": "2023-10-31T15:57:37.904174234", "version": "2022-02-14" }, { @@ -14952,14 +15152,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:27.245056594", + "loaded": "2023-10-31T15:57:38.445626983", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 40, "numberOfTerms": 3271, "ontologyId": "zfa", "status": "LOADED", - "updated": "2023-10-26T19:01:27.245056594", + "updated": "2023-10-31T15:57:38.445626983", "version": "2022-12-09" }, { @@ -15010,14 +15210,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:28.276889387", + "loaded": "2023-10-31T15:57:39.445595803", "message": "", "numberOfIndividuals": 0, "numberOfProperties": 21, "numberOfTerms": 54, "ontologyId": "zfs", "status": "LOADED", - "updated": "2023-10-26T19:01:28.276889387", + "updated": "2023-10-31T15:57:39.445595803", "version": null }, { @@ -15068,14 +15268,14 @@ "en" ], "loadAttempts": 0, - "loaded": "2023-10-26T19:01:39.791666354", + "loaded": "2023-10-31T15:57:51.208842246", "message": "", "numberOfIndividuals": 18, "numberOfProperties": 492, "numberOfTerms": 63471, "ontologyId": "zp", "status": "LOADED", - "updated": "2023-10-26T19:01:39.791666354", + "updated": "2023-10-31T15:57:51.208842246", "version": "2022-12-17" } ] @@ -15088,7 +15288,7 @@ "page": { "number": 0, "size": 1000, - "totalElements": 247, + "totalElements": 250, "totalPages": 1 } } \ No newline at end of file diff --git a/src/bioregistry/data/external/wikidata/processed.json b/src/bioregistry/data/external/wikidata/processed.json index 0ffb13f27..c303955fb 100644 --- a/src/bioregistry/data/external/wikidata/processed.json +++ b/src/bioregistry/data/external/wikidata/processed.json @@ -3368,7 +3368,7 @@ "name": "iNaturalist taxon ID", "pattern": "^[1-9]\\d{0,6}$", "prefix": "P3151", - "uri_format": "https://www.inaturalist.org/taxa/$1" + "uri_format": "https://inaturalist.org/taxa/$1" }, "P3165": { "description": "identifier for a horse on Horsetelex database", @@ -9301,13 +9301,14 @@ "database": "Q11801904", "description": "identifier for a scientific work issued by PubMed Central (without \"PMC\" prefix)", "example": [ - "1201091" + "1201091", + "3682911" ], "homepage": "https://www.ncbi.nlm.nih.gov/pmc/", "name": "PMCID", "pattern": "^[1-9]\\d{0,7}$", "prefix": "P932", - "uri_format": "http://europepmc.org/articles/PMC$1" + "uri_format": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC$1" }, "P9334": { "database": "Q104030182", From f9093bb1479bb3a53b36d6222dc3a922dc053b01 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Thu, 2 Nov 2023 01:09:25 +0000 Subject: [PATCH 2/3] =?UTF-8?q?Bump=20version:=200.10.68-dev=20=E2=86=92?= =?UTF-8?q?=200.10.68?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- docs/source/conf.py | 2 +- setup.cfg | 2 +- src/bioregistry/version.py | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 96277976c..289181683 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.10.68-dev +current_version = 0.10.68 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(?:-(?P[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))? diff --git a/docs/source/conf.py b/docs/source/conf.py index bd231197f..8aff79efb 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -27,7 +27,7 @@ author = "Charles Tapley Hoyt" # The full version, including alpha/beta/rc tags. -release = "0.10.68-dev" +release = "0.10.68" # The short X.Y version. parsed_version = re.match( diff --git a/setup.cfg b/setup.cfg index d1f4651a9..5bdf6e5e0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -4,7 +4,7 @@ # Configuring setup() [metadata] name = bioregistry -version = 0.10.68-dev +version = 0.10.68 description = Integrated registry of biological databases and nomenclatures long_description = file: README.md long_description_content_type = text/markdown diff --git a/src/bioregistry/version.py b/src/bioregistry/version.py index cd34033c4..d4a5a9738 100644 --- a/src/bioregistry/version.py +++ b/src/bioregistry/version.py @@ -12,7 +12,7 @@ "get_git_hash", ] -VERSION = "0.10.68-dev" +VERSION = "0.10.68" def get_git_hash() -> Optional[str]: From fc88dcfd72004404ab945bde6423406de20ac8ec Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Thu, 2 Nov 2023 01:10:00 +0000 Subject: [PATCH 3/3] =?UTF-8?q?Bump=20version:=200.10.68=20=E2=86=92=200.1?= =?UTF-8?q?0.69-dev?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- docs/source/conf.py | 2 +- setup.cfg | 2 +- src/bioregistry/version.py | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 289181683..d070c53af 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.10.68 +current_version = 0.10.69-dev commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(?:-(?P[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))? diff --git a/docs/source/conf.py b/docs/source/conf.py index 8aff79efb..24099c3b0 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -27,7 +27,7 @@ author = "Charles Tapley Hoyt" # The full version, including alpha/beta/rc tags. -release = "0.10.68" +release = "0.10.69-dev" # The short X.Y version. parsed_version = re.match( diff --git a/setup.cfg b/setup.cfg index 5bdf6e5e0..d0ef2a3b9 100644 --- a/setup.cfg +++ b/setup.cfg @@ -4,7 +4,7 @@ # Configuring setup() [metadata] name = bioregistry -version = 0.10.68 +version = 0.10.69-dev description = Integrated registry of biological databases and nomenclatures long_description = file: README.md long_description_content_type = text/markdown diff --git a/src/bioregistry/version.py b/src/bioregistry/version.py index d4a5a9738..51c9caa6c 100644 --- a/src/bioregistry/version.py +++ b/src/bioregistry/version.py @@ -12,7 +12,7 @@ "get_git_hash", ] -VERSION = "0.10.68" +VERSION = "0.10.69-dev" def get_git_hash() -> Optional[str]: